BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P20433
(221 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4BY1-D nrPDB 444 e-125
1Y14-A nrPDB 376 e-105
1PQV-D nrPDB 350 2e-97
1WCM-D nrPDB 333 2e-92
5XOG-D nrPDB 144 4e-35
3H0G-D nrPDB 73 1e-13
5IY7-D nrPDB 69 2e-12
4DN6-A nrPDB 28 2.3
6DZ7-B nrPDB 28 3.0
2E87-A nrPDB 28 4.4
2GTT-A nrPDB 27 6.6
4C7O-A nrPDB 27 7.3
4XKB-A nrPDB 27 7.6
4GLW-A nrPDB 27 9.1
>4BY1-D nrPDB
Length = 221
Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK 60
MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK
Sbjct: 1 MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK 60
Query: 61 EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE 120
EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE
Sbjct: 61 EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE 120
Query: 121 KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL 180
KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL
Sbjct: 121 KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL 180
Query: 181 GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Sbjct: 181 GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
>1Y14-A nrPDB
Length = 187
Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 35 LKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAV 94
LKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAV
Sbjct: 1 LKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAV 60
Query: 95 EDEDDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRF 154
EDEDDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRF
Sbjct: 61 EDEDDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRF 120
Query: 155 RDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKEL 214
RDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKEL
Sbjct: 121 RDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKEL 180
Query: 215 SNLETLY 221
SNLETLY
Sbjct: 181 SNLETLY 187
>1PQV-D nrPDB
Length = 221
Score = 350 bits (899), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 192/221 (86%), Positives = 192/221 (86%)
Query: 1 MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK 60
MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK
Sbjct: 1 MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK 60
Query: 61 EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE 120
EALVERRRAFKRSQKKHKKKHLKHE HSETRE
Sbjct: 61 EALVERRRAFKRSQKKHKKKHLKHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSETRE 120
Query: 121 KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL 180
KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL
Sbjct: 121 KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL 180
Query: 181 GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Sbjct: 181 GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
>1WCM-D nrPDB
Length = 177
Score = 333 bits (855), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/218 (81%), Positives = 177/218 (81%), Gaps = 41/218 (18%)
Query: 4 STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEAL 63
STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEAL
Sbjct: 1 STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEAL 60
Query: 64 VERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETREKEL 123
VERRRAFKRSQKK TREKEL
Sbjct: 61 VERRRAFKRSQKK-----------------------------------------TREKEL 79
Query: 124 ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSL 183
ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSL
Sbjct: 80 ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSL 139
Query: 184 ACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
ACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Sbjct: 140 ACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 177
>5XOG-D nrPDB
Length = 186
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 128/227 (56%), Gaps = 48/227 (21%)
Query: 1 MNVSTSTFQTRRRRLKK-VEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVI 59
MNVSTST RRRR K+ V++EENA L+LG EF LKQ +H G E +LIAL+LSE+RL+I
Sbjct: 1 MNVSTSTVGARRRRAKQQVDDEENATLLRLGPEFALKQYDHDGNEHDLIALSLSESRLLI 60
Query: 60 KEALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETR 119
+EAL R RA + + E++N E DDD+
Sbjct: 61 REALKARSRA--------RNGGVDIESSNGEI-----------------DDDE------- 88
Query: 120 EKELESIDVLLEQTTGG-NNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTG----LHP 174
L + T+G N +K T+ YL F+RF+D+ET AV QLL ++ LHP
Sbjct: 89 ---------LAKVTSGAVANGVVKKTLDYLNTFARFKDEETCTAVDQLLHNSSDCSVLHP 139
Query: 175 FEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
FE+AQL SL C+ DEA TLIPSL K + L+RIL EL+ LE Y
Sbjct: 140 FEIAQLSSLGCEDVDEAITLIPSLAAK-KEVNLQRILDELNRLEDPY 185
>3H0G-D nrPDB
Length = 135
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNN 200
+K T+ Y F+RF+ E A ++L + H FE AQLG+L C+ A+EA+TLIPSL N
Sbjct: 55 MKKTVAYFNVFARFKTAEATYACERILGNR-FHKFERAQLGTLCCEDAEEARTLIPSLAN 113
Query: 201 KISDDELERILKELSNL 217
KI D L+ IL ELS L
Sbjct: 114 KIDDQNLQGILDELSTL 130
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 11/48 (22%)
Query: 21 EENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRR 68
EE+AA L+LG EF E E++ L +SEA+++I+ L +R R
Sbjct: 7 EEDAAQLKLGPEF---------ENEDM--LTVSEAKILIETVLAQRAR 43
>5IY7-D nrPDB
Length = 142
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 144 TMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKIS 203
T+ Y FSRF+++ET+ +V LL LH FE+A L +L +TA+E+K LIPSL +
Sbjct: 64 TLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFE 123
Query: 204 DDELERIL 211
D+EL++IL
Sbjct: 124 DEELQQIL 131
>4DN6-A nrPDB
Length = 146
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKST-GLHPFEVAQLGSLACDTADEA 191
L + + + + R+R TVG Q+++ T GL F++ + +A DTA+ A
Sbjct: 33 LAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGVALDTAELA 84
>6DZ7-B nrPDB
Length = 735
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 66 RRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETREKELES 125
++R F+ ++ KK+H K E N A E + L +D+ D+ F+ E ELE
Sbjct: 452 KQRVFREYKEYTKKQHAKAEPGNG---AGEKKTVSLGDDE---DEARFLTRVRNEAELED 505
Query: 126 IDV 128
DV
Sbjct: 506 YDV 508
>2E87-A nrPDB
Length = 357
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 156 DQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADE--AKTLIPSLNNKISDDELERILK 212
D+E + + + +K GL+P +++ L D E KTL P L K++ +++ER L+
Sbjct: 294 DEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP-LAEKVAREKIERELR 351
>2GTT-A nrPDB
Length = 450
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 102 DEDDVNADDDDFMHSETREKELESIDVLL 130
D+ VN+DD+D+ ETR E +++
Sbjct: 383 DDGTVNSDDEDYFSGETRSPEAVYTRIMM 411
>4C7O-A nrPDB
Length = 298
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 12 RRRLKKVEEEENAATLQLGQEFQLKQINHQ-----GEEEELIALNLSEARLVIKEAL--- 63
R + K V E N +L GQEF +K + ++ GEE + + L +V+ L
Sbjct: 54 RVKEKAVGHEVNK-SLTPGQEF-VKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGA 111
Query: 64 -----VERRRAFKRSQKKHKKKHL-------KHENANDETTAVEDEDDDLDEDDVNADDD 111
V + F R +KHKKK L + T E D DV
Sbjct: 112 GKTTSVGKLGKFLR--EKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPV 169
Query: 112 DFMHSETREKELESIDVLLEQTTG 135
D +++ +E +L+ DVLL T G
Sbjct: 170 DIVNAALKEAKLKFYDVLLVDTAG 193
>4XKB-A nrPDB
Length = 233
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 30/103 (29%)
Query: 114 MHSETREKELESIDVLLEQTTGGNNKDL----------------KNTMQYLTNFSRFRDQ 157
+H + +K+L +I L E GG L N Q L N +Q
Sbjct: 12 LHDASEKKQLTAIAALAEMGEGGQGILLDYLAKNVPLEKPVLAVGNVYQTLRNL----EQ 67
Query: 158 ETVGAVIQLLKSTGLHPFEVAQ----------LGSLACDTADE 190
ET+ +Q TG+ P + AQ LGS +TADE
Sbjct: 68 ETITTQLQRNYPTGIFPLQSAQGIDYLPLQEALGSQDFETADE 110
>4GLW-A nrPDB
Length = 305
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 199 NNKISDDELERILKELSNLETLY 221
N +SD E +R+ +EL LET Y
Sbjct: 24 NPSVSDSEYDRLYRELVELETAY 46
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4BY1-D nrPDB 288 9e-79
1PQV-D nrPDB 253 4e-68
1Y14-A nrPDB 243 6e-65
1WCM-D nrPDB 228 1e-60
5XOG-D nrPDB 216 7e-57
3H0G-D nrPDB 112 1e-25
5IY7-D nrPDB 96 1e-20
Sequences not found previously or not previously below threshold:
2PMZ-F nrPDB 40 0.001
1LQA-A nrPDB 32 0.25
5VAT-A nrPDB 28 2.5
3O6X-A nrPDB 28 3.2
6ID1-U nrPDB 26 9.4
>4BY1-D nrPDB
Length = 221
Score = 288 bits (737), Expect = 9e-79, Method: Composition-based stats.
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK 60
MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK
Sbjct: 1 MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK 60
Query: 61 EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE 120
EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE
Sbjct: 61 EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE 120
Query: 121 KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL 180
KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL
Sbjct: 121 KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL 180
Query: 181 GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Sbjct: 181 GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
>1PQV-D nrPDB
Length = 221
Score = 253 bits (646), Expect = 4e-68, Method: Composition-based stats.
Identities = 192/221 (86%), Positives = 192/221 (86%)
Query: 1 MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK 60
MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK
Sbjct: 1 MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK 60
Query: 61 EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE 120
EALVERRRAFKRSQKKHKKKHLKHE HSETRE
Sbjct: 61 EALVERRRAFKRSQKKHKKKHLKHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSETRE 120
Query: 121 KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL 180
KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL
Sbjct: 121 KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL 180
Query: 181 GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Sbjct: 181 GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
>1Y14-A nrPDB
Length = 187
Score = 243 bits (619), Expect = 6e-65, Method: Composition-based stats.
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 35 LKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAV 94
LKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAV
Sbjct: 1 LKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAV 60
Query: 95 EDEDDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRF 154
EDEDDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRF
Sbjct: 61 EDEDDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRF 120
Query: 155 RDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKEL 214
RDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKEL
Sbjct: 121 RDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKEL 180
Query: 215 SNLETLY 221
SNLETLY
Sbjct: 181 SNLETLY 187
>1WCM-D nrPDB
Length = 177
Score = 228 bits (581), Expect = 1e-60, Method: Composition-based stats.
Identities = 177/218 (81%), Positives = 177/218 (81%), Gaps = 41/218 (18%)
Query: 4 STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEAL 63
STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEAL
Sbjct: 1 STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEAL 60
Query: 64 VERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETREKEL 123
VERRRAFKRSQKK TREKEL
Sbjct: 61 VERRRAFKRSQKK-----------------------------------------TREKEL 79
Query: 124 ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSL 183
ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSL
Sbjct: 80 ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSL 139
Query: 184 ACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
ACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Sbjct: 140 ACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 177
>5XOG-D nrPDB
Length = 186
Score = 216 bits (549), Expect = 7e-57, Method: Composition-based stats.
Identities = 99/227 (43%), Positives = 128/227 (56%), Gaps = 48/227 (21%)
Query: 1 MNVSTSTFQTRRRRLKK-VEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVI 59
MNVSTST RRRR K+ V++EENA L+LG EF LKQ +H G E +LIAL+LSE+RL+I
Sbjct: 1 MNVSTSTVGARRRRAKQQVDDEENATLLRLGPEFALKQYDHDGNEHDLIALSLSESRLLI 60
Query: 60 KEALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETR 119
+EAL R RA + + E++N E DDD+
Sbjct: 61 REALKARSRA--------RNGGVDIESSNGEI-----------------DDDE------- 88
Query: 120 EKELESIDVLLEQTTGG-NNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTG----LHP 174
L + T+G N +K T+ YL F+RF+D+ET AV QLL ++ LHP
Sbjct: 89 ---------LAKVTSGAVANGVVKKTLDYLNTFARFKDEETCTAVDQLLHNSSDCSVLHP 139
Query: 175 FEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY 221
FE+AQL SL C+ DEA TLIPSL K + L+RIL EL+ LE Y
Sbjct: 140 FEIAQLSSLGCEDVDEAITLIPSLAAK-KEVNLQRILDELNRLEDPY 185
>3H0G-D nrPDB
Length = 135
Score = 112 bits (279), Expect = 1e-25, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 140 DLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLN 199
+K T+ Y F+RF+ E A ++L + H FE AQLG+L C+ A+EA+TLIPSL
Sbjct: 54 VMKKTVAYFNVFARFKTAEATYACERILGNR-FHKFERAQLGTLCCEDAEEARTLIPSLA 112
Query: 200 NKISDDELERILKELSNL 217
NKI D L+ IL ELS L
Sbjct: 113 NKIDDQNLQGILDELSTL 130
>5IY7-D nrPDB
Length = 142
Score = 96.2 bits (237), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 138 NKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPS 197
++ T+ Y FSRF+++ET+ +V LL LH FE+A L +L +TA+E+K LIPS
Sbjct: 58 SEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPS 117
Query: 198 LNNKISDDELERILKELSN 216
L + D+EL++IL ++
Sbjct: 118 LEGRFEDEELQQILDDIQT 136
>2PMZ-F nrPDB
Length = 113
Score = 39.5 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 134 TGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKT 193
+GG++ L+ T YL + + D E+ VI+ L + A L S+ T+DE ++
Sbjct: 27 SGGSSNLLQRTYDYLNSVEKC-DAESAQKVIEELSNIVSREDVRAILASICPTTSDEVRS 85
Query: 194 -LIPSLNNKISDDELERILK 212
L+ N + +++++I+
Sbjct: 86 ILVMDTNKTYTSEDIQKIID 105
>1LQA-A nrPDB
Length = 346
Score = 31.8 bits (70), Expect = 0.25, Method: Composition-based stats.
Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 37/180 (20%)
Query: 61 EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE 120
+AL E +RA K + + +E A + D V + + + + E
Sbjct: 162 DALAEYQRA-----GKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFE 216
Query: 121 ------KELESIDVLL-----------EQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAV 163
+ E +++L + G +NT+ + F+R+ ++T AV
Sbjct: 217 VGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTL--FSRFTRYSGEQTQKAV 274
Query: 164 IQLLKSTGLHPFEVAQLG-------------SLACDTADEAKTLIPSLNNKISDDELERI 210
+ H + AQ+ L T D+ KT I SL+ ++S+D L I
Sbjct: 275 AAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI 334
>5VAT-A nrPDB
Length = 543
Score = 28.4 bits (61), Expect = 2.5, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 16 KKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQK 75
+ ++++ NA++ EF + ++ E E+ L AR++I+E VE+ A R
Sbjct: 4 QTLQKDANASS-----EFYINKLGQTQELEDQQTYKLLAARVLIRENKVEQSAALLRELG 58
Query: 76 KHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTG 135
+ + + +++ ++ + A D + + + + E++ ++ E
Sbjct: 59 ELNDAQKLDRALIEARISAAKNANEVAQNQLRALDLNKLSPSQKSRYYETLAIVAE---- 114
Query: 136 GNNKDL 141
N KD+
Sbjct: 115 -NRKDM 119
>3O6X-A nrPDB
Length = 729
Score = 28.0 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 14 RLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVI--KEALVERRRAFK 71
R+K++ EE + ++ +K+I+H+ +++ +++EAR V KE E+ A++
Sbjct: 632 RMKEIFSEEEYEVMSADRKELIKEISHRVSAIKVLVRDMTEARKVANHKENFKEKAFAYE 691
Query: 72 RSQKKHKKKHLKHENANDETTAVEDEDDD 100
+ + + E+ D +E E DD
Sbjct: 692 ETVRPY------LESIRDHIDHLEMEIDD 714
>6ID1-U nrPDB
Length = 894
Score = 26.4 bits (56), Expect = 9.4, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 3 VSTSTFQTRRRRLKKVEEEENAATLQLG-QEFQLKQINHQGEE----EELIALNLSEARL 57
VS+S+ + + ++K+E+E+N A Q E +L G E+ ++++ +
Sbjct: 165 VSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGLPPEDCSVSSITKVSV 224
Query: 58 VIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSE 117
V L R+++ R +++ +K+ E+ E + ED A +
Sbjct: 225 VEDGGLSWLRKSYLRMKEQAEKQSRNFEDIVAERYGSMEIFQSKLEDAEKAASTKEDYRR 284
Query: 118 TREKELESID 127
R ++ D
Sbjct: 285 ERWRKPTYSD 294
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.302 0.111 0.263
Lambda K H
0.267 0.0331 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,114,855
Number of Sequences: 36641
Number of extensions: 217133
Number of successful extensions: 1213
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 267
length of query: 221
length of database: 10,336,785
effective HSP length: 93
effective length of query: 128
effective length of database: 6,929,172
effective search space: 886934016
effective search space used: 886934016
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 56 (26.5 bits)