BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P19926
(413 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1NT4-A nrPDB 818 0.0
1DKL-A nrPDB 205 3e-53
2WNI-A nrPDB 149 2e-36
5CDH-A nrPDB 31 1.1
3JUL-A nrPDB 29 3.7
1QFX-A nrPDB 29 4.0
1T90-A nrPDB 28 6.8
2H47-A nrPDB 28 6.9
3K4P-A nrPDB 28 8.2
3E15-A nrPDB 28 9.0
>1NT4-A nrPDB
Length = 391
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/391 (99%), Positives = 390/391 (99%)
Query: 23 QTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM 82
QTVPEGYQLQQVLMMSR NLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM
Sbjct: 1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM 60
Query: 83 GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 142
GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM
Sbjct: 61 GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 120
Query: 143 GTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQC 202
GTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQC
Sbjct: 121 GTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQC 180
Query: 203 SLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 262
SLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL
Sbjct: 181 SLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 240
Query: 263 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTAL 322
SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTAL
Sbjct: 241 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTAL 300
Query: 323 DFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQ 382
DFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQ
Sbjct: 301 DFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQ 360
Query: 383 RVTLELSGCPIDADGFCPMDKFDSVLNEAVK 413
RVTLELSGCPIDADGFCPMDKFDSVLNEAVK
Sbjct: 361 RVTLELSGCPIDADGFCPMDKFDSVLNEAVK 391
>1DKL-A nrPDB
Length = 410
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 205/411 (49%), Gaps = 30/411 (7%)
Query: 23 QTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM 82
Q+ PE +L+ V+++SRH +RAP +++ TP+ WP W V G LT +GG L Y+
Sbjct: 1 QSEPE-LKLESVVIVSRHGVRAP-TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYL 58
Query: 83 GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 142
GHY R+ L G++ CP V A+ +RT T + F G P C I VH Q
Sbjct: 59 GHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADT 118
Query: 143 GTMDPTFNPVITD----DSAAFSEQAVAAMEKELSKL--QLTDSYQLLEKIVNYKDSPAC 196
+ DP FNP+ T D+A ++ ++ ++ +++ LE+++N+ S C
Sbjct: 119 SSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLC 178
Query: 197 ----KEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGE 252
K+ + CSL + ++G + + + L + F LQ +G P + WG
Sbjct: 179 LKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMP--EPGWGR 236
Query: 253 IKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKAL-----------VTDRTS 301
I QW L L N L +PEVAR+ A PL+ I AL VT TS
Sbjct: 237 ITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTS 296
Query: 302 APKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEY 361
+ + GHD+N+A+L AL+ + L Q + TP GG++VF+RW N +++
Sbjct: 297 ---VLFIAGHDTNLANLGGALELN-WTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSL 352
Query: 362 VYQSAEQLRNADALTLQAPAQRVTLELSGC-PIDADGFCPMDKFDSVLNEA 411
V+Q+ +Q+R+ L+L P V L L+GC +A G C + F ++NEA
Sbjct: 353 VFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEA 403
>2WNI-A nrPDB
Length = 418
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 187/401 (46%), Gaps = 33/401 (8%)
Query: 26 PEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHY 85
P +QL++V+ +SR +R P A N +E +T W EW G+LT G V G
Sbjct: 11 PRDWQLEKVVELSRAGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGRE 70
Query: 86 MREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTM 145
+ + G++++G CP ++Y A+ LQRT ATAQ + GAFPGC + +H+ G
Sbjct: 71 EGQHYRQLGLLQAG-CPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYAN--GDA 127
Query: 146 DPTFNPVITDDSAAF----SEQAVAAMEK--ELSKLQ--LTDSYQLLEKIVNYKDSPACK 197
DP F TD AA + Q A EK +L++ + L + QLL++ V D P
Sbjct: 128 DPLFQ---TDKFAATQTDPARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQADKP--- 181
Query: 198 EKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEI-KSD 256
C + D + +SG L V ++V+ L + E P+ Q+AWG+I ++
Sbjct: 182 ----CPIFDTPWRVEQSKSGKTTISG-LSVMANMVETLRLGWSENLPLSQLAWGKIAQAS 236
Query: 257 QQWKVLSKLKNGY---QDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDS 313
Q +L L Y D L+T A+ L++ + + + + + +LV HD+
Sbjct: 237 QITALLPLLTENYDLSNDVLYT----AQKRGSVLLNAMLDGVKPEASPNVRWLLLVAHDT 292
Query: 314 NIASLLTALDFKPYQLHDQNE-RTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNA 372
NIA + T ++F +QL + P G +V +RW D+K+ +++ + Q + LR
Sbjct: 293 NIAMVRTLMNFS-WQLPGYSRGNIPPGSSLVLERWRDAKSGERYLRVYFQAQGLDDLRRL 351
Query: 373 DALTLQAPAQRVTLELSGC-PIDADGFCPMDKFDSVLNEAV 412
Q P R GC D CP + L + +
Sbjct: 352 QTPDAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRI 392
>5CDH-A nrPDB
Length = 336
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 18/103 (17%)
Query: 39 RHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKS 98
RH R P+ + P +W GQLT +G E MG R+ E+ +
Sbjct: 9 RHGDRTPIV--------ALPTVNYQWQEGLGQLTAEGMQQEYKMGVAFRKKYIEELHL-- 58
Query: 99 GECPPPY---TVYAYANSLQRTVATAQFFITGAFP---GCDIP 135
P Y T+Y + RT+ +AQ + G +P G IP
Sbjct: 59 --LPEHYEYGTIYVRSTDYARTLMSAQSLLMGLYPPGTGPSIP 99
>3JUL-A nrPDB
Length = 320
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 92 EQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCD 133
E +V +G PP YT+ + L RTV TGAF GCD
Sbjct: 134 EDMVVIAGSPPPHYTLSDF-KELLRTVKA-----TGAFLGCD 169
>1QFX-A nrPDB
Length = 460
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 31/132 (23%)
Query: 22 AQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTP-----------------NKWPEW 64
A+ P ++ QV+M+ RH R P + G +E++ N W +
Sbjct: 45 ARDPPTSCEVDQVIMVKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYY 104
Query: 65 DVPG----GQLTTKG---GVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRT 117
VP TT G G+L+ Y ++ ++ A G + +GE P+ +++ R
Sbjct: 105 -VPNECYYNAETTSGPYAGLLDAY--NHGNDYKARYGHLWNGETVVPF----FSSGYGRV 157
Query: 118 VATAQFFITGAF 129
+ TA+ F G F
Sbjct: 158 IETARKFGEGFF 169
>1T90-A nrPDB
Length = 486
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 264 KLKNGYQDSLFTSPEVARNVAKPLVSYIDKAL 295
K+ NG D +F P + + K +SYI+K L
Sbjct: 311 KIGNGLDDGVFLGPVIREDNKKRTLSYIEKGL 342
>2H47-A nrPDB
Length = 390
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 3 KTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANN----GSVLEQSTP 58
K AAA+ G+++LA AQAQ P + ++ H++ AP N SV T
Sbjct: 6 KLTTAAAMLGLMVLAGGAQAQDKP------REVLTGGHSVSAPQENRIYVMDSVFMHLTE 59
Query: 59 NKWPEWDVPGGQLTTKGGVLEVYMGH 84
++ +D G+ G V + GH
Sbjct: 60 SRVHVYDYTNGKFL--GMVPTAFNGH 83
>3K4P-A nrPDB
Length = 444
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 311 HDSNIASLLTALDF----KPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSA 366
HD+ I S+L AL KP T G W A+R + +E + A
Sbjct: 338 HDNGIISILFALGLYNGTKPLSTTTVENITQTDG--FSSAWTVPFASR--LYVEMMQCQA 393
Query: 367 EQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKF 404
EQ + L RV + L GCP+DA G C D F
Sbjct: 394 EQ----EPLVRVLVNDRV-VPLHGCPVDALGRCTRDSF 426
>3E15-A nrPDB
Length = 312
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 277 PEVARNVAKPLVSYIDKA--LVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNE 334
P+ ++N+ + + Y +K +V T + +G D +IASL + F Y + QN
Sbjct: 132 PDTSKNIVECVRDYNEKIKNMVKKYTKVDIAILGMGSDFHIASLFPNIFFNIYMNNYQNS 191
Query: 335 RTPIGGKIVFQRWHDS--KANRDLMKIEYVY 363
I +D+ N DL+K EYVY
Sbjct: 192 YIYDESSIKVANSNDTSDNDNLDLLK-EYVY 221
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1NT4-A nrPDB 651 0.0
1DKL-A nrPDB 511 e-145
2WNI-A nrPDB 477 e-135
Sequences not found previously or not previously below threshold:
1RPA-A nrPDB 74 2e-13
1ND5-A nrPDB 69 3e-12
5CDH-A nrPDB 59 3e-09
4JOD-A nrPDB 42 3e-04
1QFX-A nrPDB 42 5e-04
1SK9-A nrPDB 36 0.041
5YSW-A nrPDB 35 0.059
2H47-A nrPDB 33 0.21
5L2P-A nrPDB 33 0.22
2GFI-A nrPDB 33 0.29
3FJ1-A nrPDB 31 0.73
6B45-B nrPDB 31 0.76
5TGT-A nrPDB 31 1.2
2G8S-A nrPDB 30 1.8
>1NT4-A nrPDB
Length = 391
Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats.
Identities = 390/391 (99%), Positives = 390/391 (99%)
Query: 23 QTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM 82
QTVPEGYQLQQVLMMSR NLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM
Sbjct: 1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM 60
Query: 83 GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 142
GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM
Sbjct: 61 GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 120
Query: 143 GTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQC 202
GTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQC
Sbjct: 121 GTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQC 180
Query: 203 SLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 262
SLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL
Sbjct: 181 SLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 240
Query: 263 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTAL 322
SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTAL
Sbjct: 241 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTAL 300
Query: 323 DFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQ 382
DFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQ
Sbjct: 301 DFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQ 360
Query: 383 RVTLELSGCPIDADGFCPMDKFDSVLNEAVK 413
RVTLELSGCPIDADGFCPMDKFDSVLNEAVK
Sbjct: 361 RVTLELSGCPIDADGFCPMDKFDSVLNEAVK 391
>1DKL-A nrPDB
Length = 410
Score = 511 bits (1315), Expect = e-145, Method: Composition-based stats.
Identities = 128/408 (31%), Positives = 202/408 (49%), Gaps = 24/408 (5%)
Query: 23 QTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM 82
Q+ PE +L+ V+++SRH +RAP +++ TP+ WP W V G LT +GG L Y+
Sbjct: 1 QSEPE-LKLESVVIVSRHGVRAP-TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYL 58
Query: 83 GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 142
GHY R+ L G++ CP V A+ +RT T + F G P C I VH Q
Sbjct: 59 GHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADT 118
Query: 143 GTMDPTFNPVITD----DSAAFSEQAVAAMEKELSKL--QLTDSYQLLEKIVNYKDSPAC 196
+ DP FNP+ T D+A ++ ++ ++ +++ LE+++N+ S C
Sbjct: 119 SSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLC 178
Query: 197 ----KEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGE 252
K+ + CSL + ++G + + + L + F LQ +G P + WG
Sbjct: 179 LKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMP--EPGWGR 236
Query: 253 IKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDR--------TSAPK 304
I QW L L N L +PEVAR+ A PL+ I AL T
Sbjct: 237 ITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTS 296
Query: 305 ITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQ 364
+ + GHD+N+A+L AL+ + L Q + TP GG++VF+RW N +++ V+Q
Sbjct: 297 VLFIAGHDTNLANLGGALELN-WTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQ 355
Query: 365 SAEQLRNADALTLQAPAQRVTLELSGC-PIDADGFCPMDKFDSVLNEA 411
+ +Q+R+ L+L P V L L+GC +A G C + F ++NEA
Sbjct: 356 TLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEA 403
>2WNI-A nrPDB
Length = 418
Score = 477 bits (1227), Expect = e-135, Method: Composition-based stats.
Identities = 116/401 (28%), Positives = 187/401 (46%), Gaps = 33/401 (8%)
Query: 26 PEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHY 85
P +QL++V+ +SR +R P A N +E +T W EW G+LT G V G
Sbjct: 11 PRDWQLEKVVELSRAGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGRE 70
Query: 86 MREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTM 145
+ + G++++G CP ++Y A+ LQRT ATAQ + GAFPGC + +H+ G
Sbjct: 71 EGQHYRQLGLLQAG-CPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYAN--GDA 127
Query: 146 DPTFNPVITDDSAAF----SEQAVAAMEK--ELSKLQ--LTDSYQLLEKIVNYKDSPACK 197
DP F TD AA + Q A EK +L++ + L + QLL++ V D P
Sbjct: 128 DPLFQ---TDKFAATQTDPARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQADKP--- 181
Query: 198 EKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEI-KSD 256
C + D + +SG L V ++V+ L + E P+ Q+AWG+I ++
Sbjct: 182 ----CPIFDTPWRVEQSKSGKTTISG-LSVMANMVETLRLGWSENLPLSQLAWGKIAQAS 236
Query: 257 QQWKVLSKLKNGY---QDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDS 313
Q +L L Y D L+T A+ L++ + + + + + +LV HD+
Sbjct: 237 QITALLPLLTENYDLSNDVLYT----AQKRGSVLLNAMLDGVKPEASPNVRWLLLVAHDT 292
Query: 314 NIASLLTALDFKPYQLHDQNE-RTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNA 372
NIA + T ++F +QL + P G +V +RW D+K+ +++ + Q + LR
Sbjct: 293 NIAMVRTLMNFS-WQLPGYSRGNIPPGSSLVLERWRDAKSGERYLRVYFQAQGLDDLRRL 351
Query: 373 DALTLQAPAQRVTLELSGC-PIDADGFCPMDKFDSVLNEAV 412
Q P R GC D CP + L + +
Sbjct: 352 QTPDAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRI 392
>1RPA-A nrPDB
Length = 342
Score = 73.7 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 70/387 (18%), Positives = 127/387 (32%), Gaps = 60/387 (15%)
Query: 30 QLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPE--WDVPGGQLTTKGGVLEVYMGHYMR 87
+L+ V ++ RH R P +E + E W GQLT G +G Y+R
Sbjct: 2 ELKFVTLVFRHGDRGP-------IETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIR 54
Query: 88 EWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDP 147
VY + + RT+ +A + FP +
Sbjct: 55 RRYGRF----LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEG------NSIWNPRL 104
Query: 148 TFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDG 207
+ P+ + ++ + + +Q L+ + + + S +D
Sbjct: 105 LWQPIPVHTVSLSEDRLLYL------PFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDT 158
Query: 208 KNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKN 267
+ S Q+ ++ + L D + F + W + + K LS+L
Sbjct: 159 LPSLSGFEDQDL-----FEIWSRLYDPLYCESVHNFTL--PTWATEDAMTKLKELSELSL 211
Query: 268 GYQDSLFTSPEVARNVAKPLVSYIDKALV--TDRTSAPKITVLVGHDSNIASLLTALDFK 325
+ E +R LV+ I K + T A K+ + HD+ ++ L ALD
Sbjct: 212 LSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKARKLIMYSAHDTTVSGLQMALDVY 271
Query: 326 PYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVT 385
L P + + + D +++ Y RN P
Sbjct: 272 NGLLP------PYASCHIMELYQD--NGGHFVEMYY--------RNETQ---NEP---YP 309
Query: 386 LELSGCPIDADGFCPMDKFDSVLNEAV 412
L L GC CP++KF +L+ +
Sbjct: 310 LTLPGCTHS----CPLEKFAELLDPVI 332
>1ND5-A nrPDB
Length = 354
Score = 69.1 bits (167), Expect = 3e-12, Method: Composition-based stats.
Identities = 67/387 (17%), Positives = 130/387 (33%), Gaps = 60/387 (15%)
Query: 30 QLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREW 89
+L+ V ++ RH R+P+ + P K W GQLT G +G Y+R+
Sbjct: 2 ELKFVTLVFRHGDRSPIDTF-----PTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKR 56
Query: 90 LAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTF 149
+ E VY + + RT+ +A + FP + + +
Sbjct: 57 YRKF----LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIW------NPILLW 106
Query: 150 NPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKN 209
P+ +Q + + +Q LE S K ++ +
Sbjct: 107 QPIPVHTVPLSEDQLLYL------PFRNCPRFQELE-------SETLKSEEFQKRLHPYK 153
Query: 210 TFSAKYQQEPGVSGP--LKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKN 267
F A + G+ G + + + D + F + +W + + + LS+L
Sbjct: 154 DFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTL--PSWATEDTMTKLRELSELSL 211
Query: 268 GYQDSLFTSPEVARNVAKPLVSYIDKALV--TDRTSAPKITVLVGHDSNIASLLTALDFK 325
+ E +R LV+ I + T S K+ + HD+ ++ L ALD
Sbjct: 212 LSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVY 271
Query: 326 PYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVT 385
L ++ F++ +++ Y ++ Q
Sbjct: 272 NGLLPPYASCHL--TELYFEK------GEYFVEMYYRNET------------QHEP--YP 309
Query: 386 LELSGCPIDADGFCPMDKFDSVLNEAV 412
L L GC CP+++F ++ +
Sbjct: 310 LMLPGCSPS----CPLERFAELVGPVI 332
>5CDH-A nrPDB
Length = 336
Score = 59.4 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 65/335 (19%), Positives = 130/335 (38%), Gaps = 48/335 (14%)
Query: 35 LMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQG 94
+ + RH R P+ + P +W GQLT +G E MG R+ E+
Sbjct: 5 VDIIRHGDRTPIV--------ALPTVNYQWQEGLGQLTAEGMQQEYKMGVAFRKKYIEE- 55
Query: 95 MVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFP---GCDIPVHHQEKMGTMDPTFNP 151
+ E T+Y + RT+ +AQ + G +P G IP + F P
Sbjct: 56 LHLLPEHYEYGTIYVRSTDYARTLMSAQSLLMGLYPPGTGPSIP----AGTSALPHAFQP 111
Query: 152 VITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTF 211
+ + + ++ + + ++ + +L+E+ Y S +++ L D +
Sbjct: 112 IPVFSAPSKYDEVI------IQQVDRKERKKLMEQ---YVFSTREWQQKNNELKDKYPLW 162
Query: 212 SAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQ-VAWGEIK---SDQQWKVLSKLKN 267
S L+ ++ + PM + +A +I+ + +W +++ K
Sbjct: 163 SRLTGINID---TLEDLETVGHTLYVHQIHNAPMPEGLASNDIETIINSAEWAFMAQEKP 219
Query: 268 GYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPY 327
++++S + + Y++ + + S K +L HD+ IAS+L+ L
Sbjct: 220 QQIANVYSS-----KLMTNIADYLNSG--SMKKSKLKYVLLSAHDTTIASVLSFL----- 267
Query: 328 QLHDQN-ERTPIGGKIVFQRWHDSKANRDLMKIEY 361
E++P V +D+ AN +KI Y
Sbjct: 268 ---GAPLEKSPPYASNVNFSLYDNGANYYTVKITY 299
>4JOD-A nrPDB
Length = 396
Score = 42.5 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 66/436 (15%), Positives = 131/436 (30%), Gaps = 107/436 (24%)
Query: 15 LLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLAN---------NGSVLE----------- 54
L ++ Q +L+ V ++ RH R+PL N +LE
Sbjct: 2 LQEADGQCPVDRSLLKLKMVQVVFRHGARSPLKPLPLEEQVEWNPQLLEVPPQTQFDYTV 61
Query: 55 ---QSTPNKWPEWDVP-----------GGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGE 100
P + +D GQLT G +G +R+ E S
Sbjct: 62 TNLAGGPKPYSPYDSQYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLS-- 119
Query: 101 CPP--PYTVYAYANSLQRTVATAQFFITGAFPGCD----IPVHH-QEKMGTMDPTFNPVI 153
P P V+ + ++ R + + + + G F C I +H + + P +
Sbjct: 120 -PTFNPQEVFIRSTNIFRNLESTRCLLAGLF-QCQKEGPIIIHTDEADSEVLYPNYQSCW 177
Query: 154 TDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSA 213
+ + A+++ +S+ L+K+ KD + + +A
Sbjct: 178 SLRQRTRGRRQTASLQPGISE--------DLKKV---KDRMGIDSSDKVDFFILLDNVAA 226
Query: 214 KYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSL 273
+ LK +++ + + K +
Sbjct: 227 EQAHNLPSCPMLKRFARMIE--------------------QRAVDTSLYILPKEDRESLQ 266
Query: 274 FTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQN 333
+ L+ +D A D+ K+ + HD LL L ++
Sbjct: 267 MAVGPFLHILESNLLKAMDSATAPDKIR--KLYLYAAHDVTFIPLLMTLGIFDHKWP--- 321
Query: 334 ERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPI 393
P + + + ++ +++ Y EQ+ GCP
Sbjct: 322 ---PFAVDLTMELYQHLESKEWFVQLYY--HGKEQVPR------------------GCP- 357
Query: 394 DADGFCPMDKFDSVLN 409
DG CP+D F + ++
Sbjct: 358 --DGLCPLDMFLNAMS 371
>1QFX-A nrPDB
Length = 460
Score = 42.1 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 62/429 (14%), Positives = 126/429 (29%), Gaps = 100/429 (23%)
Query: 22 AQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWP--------------EWD-- 65
A+ P ++ QV+M+ RH R P + G +E++ + +W
Sbjct: 45 ARDPPTSCEVDQVIMVKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYY 104
Query: 66 VP-----GGQLT--TKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTV 118
VP + T G+L+ Y ++ ++ A G + +GE P+ Y ++
Sbjct: 105 VPNECYYNAETTSGPYAGLLDAY--NHGNDYKARYGHLWNGETVVPFFSSGYGRVIETAR 162
Query: 119 ATAQ-FFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQL 177
+ FF + + + ++ D TD+ + +L + ++
Sbjct: 163 KFGEGFFGYNYSTNAALNIISESEVMGADSLTPTCDTDNDQTTCDNLTY----QLPQFKV 218
Query: 178 TDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTL 237
+ Q PG++ + + + +
Sbjct: 219 AAA--------------------------------RLNSQNPGMN---LTASDVYNLMVM 243
Query: 238 QYYEGFPMDQVAWGEIKSDQQWKVLSKLKN-GYQDSLFTSPEVARNVAKPLVSYIDKALV 296
+E W + +W +++ Y + V + L
Sbjct: 244 ASFELNARPFSNWINAFTQDEWVSFGYVEDLNYYYCAGPGDKNMAAVGAVYANASLTLLN 303
Query: 297 TDRTSAPKITVLVGHDSNIASLLTALDF---------------KPYQLHDQNERTPIGGK 341
A + HD+NI +L AL PY + P+GG
Sbjct: 304 QGPKEAGSLFFNFAHDTNITPILAALGVLIPNEDLPLDRVAFGNPYSI---GNIVPMGGH 360
Query: 342 IVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPM 401
+ +R + + L L L + C CP+
Sbjct: 361 LTIER------------LSCQATALSDEGTYVRLVLN----EAVLPFNDCTSGPGYSCPL 404
Query: 402 DKFDSVLNE 410
+ S+LN+
Sbjct: 405 ANYTSILNK 413
>1SK9-A nrPDB
Length = 439
Score = 35.6 bits (80), Expect = 0.041, Method: Composition-based stats.
Identities = 74/439 (16%), Positives = 140/439 (31%), Gaps = 96/439 (21%)
Query: 22 AQTVPEGYQLQQVLMMSRHNLRAPLANNG-------SVLEQSTPN--------KWPEWDV 66
+ +P+ ++ V ++SRH R P ++ + ++ + + K + +
Sbjct: 37 SSKLPKDCRITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTL 96
Query: 67 PGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFIT 126
LT G V G + + P + A+ R +A+ + FI
Sbjct: 97 GADDLTPFGEQQLVNSGIKFYQRYKA---LARSVVP-----FIRASGSDRVIASGEKFIE 148
Query: 127 G--------------AFPGCDIPVHHQEKMGT-----------MDPTFNPVITDDSAAFS 161
G A P + + E + V + +A F+
Sbjct: 149 GFQQAKLADPGATNRAAPAISVIIPESETFNNTLDHGVCTKFEASQLGDEVAANFTALFA 208
Query: 162 EQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGV 221
A EK L + LTD E +V+ D CS D S Q P
Sbjct: 209 PDIRARAEKHLPGVTLTD-----EDVVSLMD--------MCS-FDTVARTSDASQLSP-- 252
Query: 222 SGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVAR 281
FT ++ + Q + G+ L Q FT+ +AR
Sbjct: 253 ---------FCQLFTHNEWKKYNYLQ-SLGKYYGYGAGNPL----GPAQGIGFTNELIAR 298
Query: 282 NVAKPLVSYIDK--ALVTDRTSAP---KITVLVGHDSNIASLLTALDFKPYQLHDQNERT 336
P+ + LV++ + P + V HD+++ S+ AL T
Sbjct: 299 LTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFSHDNSMVSIFFAL--------GLYNGT 350
Query: 337 PIGGKIVFQRWHDSKANRDLMKIEY----VYQSAEQLRNADALTLQAPAQRVTLELSGCP 392
+ + + + + +++ + + L ++A + L GC
Sbjct: 351 EPLSRTSVESAKELDGYSASWVVPFGARAYFETMQCKSEKEPL-VRALINDRVVPLHGCD 409
Query: 393 IDADGFCPMDKFDSVLNEA 411
+D G C ++ F L+ A
Sbjct: 410 VDKLGRCKLNDFVKGLSWA 428
>5YSW-A nrPDB
Length = 441
Score = 35.2 bits (79), Expect = 0.059, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 43/142 (30%), Gaps = 15/142 (10%)
Query: 261 VLSKLKNGYQDSLFTSPEVARNVAKP--LVSYIDKALVTDRTSAPKITVLVGHDSNIA-- 316
S L G L ++A P + +++ L P I D A
Sbjct: 282 TASMLGLGIFVLLQRPAQLATLRDDPSRIADAVEELLRYLSVVNPGIFRFAKEDLEFAGE 341
Query: 317 -----------SLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQS 365
+ T D + + D + P G + F + L ++E
Sbjct: 342 HIPAGSTVVVSVVATNRDARHWPDPDLDLTRPRGPHLAFGHGVHQCLGQQLARMEMQAGY 401
Query: 366 AEQLRNADALTLQAPAQRVTLE 387
AE LR + L P + V L
Sbjct: 402 AELLRRLPNVRLAVPPEEVPLR 423
>2H47-A nrPDB
Length = 390
Score = 33.3 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 3 KTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQS 56
K AAA+ G+++LA AQAQ P ++ H++ AP N V++
Sbjct: 6 KLTTAAAMLGLMVLAGGAQAQDKPRE------VLTGGHSVSAPQENRIYVMDSV 53
>5L2P-A nrPDB
Length = 306
Score = 33.3 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 127 GAFPGCDIPVHHQEKMGTMD------PTFNPVITDDSAAFSEQAVAAMEKE-LSKLQLTD 179
G F ++PV + KM D P F+P+I +D + + V E + L
Sbjct: 201 GYFLDINLPVDYGVKMYIRDEKDLYNPLFSPLIAEDLSNLPQAIVVTAEYDPLRDQGEAY 260
Query: 180 SYQLLEKIV 188
+Y+L+E V
Sbjct: 261 AYRLMESGV 269
>2GFI-A nrPDB
Length = 458
Score = 32.9 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 116/367 (31%), Gaps = 65/367 (17%)
Query: 25 VPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGH 84
+P+ L+QV + SRH R P +G + + + G T KG + + +
Sbjct: 55 IPDQCTLEQVQLFSRHGERYPSTGSGKKYKAV----YEKLMSYNG--TFKGELAFLNDDY 108
Query: 85 YMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGT 144
E+ + E P + YA + G + E T
Sbjct: 109 ---EYFVPDSVYLEKETSPKNSDSIYAGT-----------TDAMKHGIAFRTKYGELFDT 154
Query: 145 MDPTFNPVITDDSAAF--SEQAVAA--MEKELSKLQLTDSY----------QLLEKIVNY 190
D PV T +S + Q A M + S + + L + +
Sbjct: 155 NDTL--PVFTSNSGRVYQTSQYFARGFMGDDFSNDTVKTNIISEDADMGANSLTPRDGCF 212
Query: 191 -----KDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVD--AFTLQYYEGF 243
++ E L N F PG++ ++L A+ L
Sbjct: 213 NYNENANTAIVDEYTTEYLTKALNRF---KASNPGLNITEDDVSNLFGYCAYELNVKGAS 269
Query: 244 PMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAP 303
PM + E Q+ L + Y +S + R + L++ + L D+
Sbjct: 270 PMCDIFTNE--EFIQYSYSVDLDDYYSNS--AGNNMTRVIGSTLLNASLELLNHDKNENK 325
Query: 304 KITVLVGHDSNIASLLTAL-----------DFKPYQLH-DQNERTPIGGKIVFQRWHDSK 351
HD++I +A+ D+ P+ TP G + + +++ +
Sbjct: 326 IWLSFT-HDTDIEIFHSAIGILIPDEDLPVDYTPFPSPYSHVGITPQGARTIIEKY--AC 382
Query: 352 ANRDLMK 358
N ++
Sbjct: 383 GNESYVR 389
>3FJ1-A nrPDB
Length = 344
Score = 31.3 bits (69), Expect = 0.73, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
Query: 3 KTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWP 62
KT + +AVAG++LLA A+ LRA L N L ++ WP
Sbjct: 154 KTFVTSAVAGLMLLADWAEDD-----------------GLRAALGNLPETLAAASRIDWP 196
Query: 63 EWDVPGG 69
E V G
Sbjct: 197 EMRVAIG 203
>6B45-B nrPDB
Length = 329
Score = 31.3 bits (69), Expect = 0.76, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 24 TVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPG--GQLTT 73
T+PE L +L + R N P ++ E S P+ W V G L
Sbjct: 205 TLPEATTLDALLDLCRINFEPPATSSEE--EASPPDA--AWQVRDKPGWLVP 252
>5TGT-A nrPDB
Length = 502
Score = 30.6 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 131 GC--DIPVHHQEKMGTMDPTFNPVITDDSAAFSE-QAVAAMEKELSKLQLTDSYQLL 184
GC + H Q K+ + P P IT +++ S A+ + +LS+ +L + +LL
Sbjct: 426 GCIQAVAEHLQLKLRDVMPLMFPAITGHASSVSVLDAMEILGADLSRYRLRQALELL 482
>2G8S-A nrPDB
Length = 353
Score = 30.2 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 41 NLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGM 95
AP N VL+ + W L G+L G +R W A +G+
Sbjct: 1 GAMAPATVNVEVLQDKLDHPWA-----LAFLPDNHGMLITLRGGELRHWQAGKGL 50
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.304 0.121 0.317
Lambda K H
0.267 0.0374 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,690,022
Number of Sequences: 36641
Number of extensions: 495668
Number of successful extensions: 1265
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 35
length of query: 413
length of database: 10,336,785
effective HSP length: 99
effective length of query: 314
effective length of database: 6,709,326
effective search space: 2106728364
effective search space used: 2106728364
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 60 (27.9 bits)