BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P19658
         (623 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2B7M-A nrPDB                                                         1159   0.0  
4RL5-A nrPDB                                                           58   1e-08
2PFT-A nrPDB                                                           53   4e-07
3HTV-A nrPDB                                                           33   0.46 
5GW4-d nrPDB                                                           32   0.68 
4KPT-A nrPDB                                                           31   1.3  
6FXG-A nrPDB                                                           31   1.5  
1KPS-B nrPDB                                                           30   3.3  
3QC1-A nrPDB                                                           30   3.7  
5CO0-O nrPDB                                                           30   4.1  
1OXJ-A nrPDB                                                           29   5.9  
6FYX-o nrPDB                                                           29   7.6  
3SH1-A nrPDB                                                           28   8.1  
1BY1-A nrPDB                                                           28   9.8  

>2B7M-A nrPDB
          Length = 566

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/561 (100%), Positives = 561/561 (100%)

Query: 63  NIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANRE 122
           NIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANRE
Sbjct: 6   NIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANRE 65

Query: 123 ENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKKMPFPYYEDQQLGAL 182
           ENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKKMPFPYYEDQQLGAL
Sbjct: 66  ENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKKMPFPYYEDQQLGAL 125

Query: 183 SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSY 242
           SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSY
Sbjct: 126 SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSY 185

Query: 243 TEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFG 302
           TEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFG
Sbjct: 186 TEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFG 245

Query: 303 FFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTI 362
           FFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTI
Sbjct: 246 FFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTI 305

Query: 363 PSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWED 422
           PSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWED
Sbjct: 306 PSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWED 365

Query: 423 HNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTL 482
           HNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTL
Sbjct: 366 HNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTL 425

Query: 483 VEQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDK 542
           VEQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDK
Sbjct: 426 VEQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDK 485

Query: 543 EQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKN 602
           EQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKN
Sbjct: 486 EQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKN 545

Query: 603 PRKHIKYTPDELTTVLNQLVR 623
           PRKHIKYTPDELTTVLNQLVR
Sbjct: 546 PRKHIKYTPDELTTVLNQLVR 566


>4RL5-A nrPDB
          Length = 565

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 545 IKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYK---DSFK 601
           +KE+F+ FN  F++L  +  Q+ + D  L+ +L+  +  +++P Y  F  R+    +S K
Sbjct: 475 LKERFKMFNMQFDELHQRQSQWTVPDTELRESLRLAVAEVLLPAYRSFLKRFGPLVESGK 534

Query: 602 NPRKHIKYTPDELTTVLNQL 621
           NP+K+IKYT ++L  +L +L
Sbjct: 535 NPQKYIKYTAEDLERLLGEL 554


>2PFT-A nrPDB
          Length = 571

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 27/205 (13%)

Query: 426 LLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTLVEQ 485
           LLS +I   +  L +NL  K+++     ++P ++               F+  N   + +
Sbjct: 380 LLSTYICKVLGNLQLNLLSKSKVY----EDPALS-------------AIFLHNNYNYILK 422

Query: 486 IVEKSELNLMLAGEGHSRLERLKKRYISYMVS----DWRDLTANLMD---SVFIDSSGKK 538
            +EKSEL + L        ER  + +I   +      W  +T  + +    VF      +
Sbjct: 423 SLEKSEL-IQLVAVTQKTAERSYREHIEQQIQTYQRSWLKVTDYIAEKNLPVFQPGVKLR 481

Query: 539 SKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD 598
            K+++ IKE+F+ FN+G E+L    K + + D   +  ++     +V   Y  F  RY  
Sbjct: 482 DKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGS 541

Query: 599 S--FKNPRKHIKYTPDELTTVLNQL 621
               KNP K+IKY  +++  ++++L
Sbjct: 542 VPFTKNPEKYIKYRVEQVGDMIDRL 566


>3HTV-A nrPDB
          Length = 310

 Score = 32.7 bits (73), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 534 SSGKKSKDKEQIKEKFRKFNE-------GFEDLVSKTKQYKLSDPSLKVT 576
           + G  S   E I E+ R+FN        GF  LVSK K+  +S P+L +T
Sbjct: 43  APGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIISTPNLPLT 92


>5GW4-d nrPDB
          Length = 528

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 200 DILVGERSKLILKCMAFLEPFAK---EISTAKNAPYEKGSSGMNSYTEALLG 248
           +I++      ILK MA L P A+   E+S A+++    G++ +   T ALLG
Sbjct: 54  EIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLG 105


>4KPT-A nrPDB
          Length = 251

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 377 SRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCID 436
           S+L  +S+ K   +GA +    + WL  N K+  YT++  +        L S  I+  +D
Sbjct: 124 SKLSDYSDLKGKAVGAKNGTAAQTWLQENQKKYGYTIKTYSDGVHMFAALSSGNIAGAMD 183

Query: 437 TLAV 440
            + V
Sbjct: 184 EVPV 187


>6FXG-A nrPDB
          Length = 227

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 377 SRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCID 436
           S+L  +S+ K   +GA +    + WL  N K+  YT++  +        L S  I+  +D
Sbjct: 100 SKLSDYSDLKGKAVGAKNGTAAQTWLQENQKKYGYTIKTYSDGVHMFAALSSGNIAGAMD 159

Query: 437 TLAV 440
            + V
Sbjct: 160 EVPV 163


>1KPS-B nrPDB
          Length = 171

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 347 DAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYK-----NGCLGAMDNITRENW 401
           DAID ++KKA S S+  SN  +T   +  M  L+   + K     +G L  ++++ R+++
Sbjct: 76  DAIDALMKKAFSCSSFNSNTFLTRLLIH-MGLLKSEDKIKAIPSLHGPLMVLNHVVRQDY 134

Query: 402 LP 403
            P
Sbjct: 135 FP 136


>3QC1-A nrPDB
          Length = 243

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 98  KQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIK 157
           KQ  +V H+L  +   ++SGQA+ E   E+H  L HL + I  S           L  ++
Sbjct: 184 KQKKEVEHRLSALKSAVESGQADDERVREYH--LLHLRRWIAVS-----------LEELE 230

Query: 158 PFDPQINITKK 168
             D +I I K+
Sbjct: 231 SIDQEIKILKE 241


>5CO0-O nrPDB
          Length = 324

 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 345 FRDAIDRIIKKANSISTIPSNNGVTEATVDTM-SRLRKFSEYKNGCLGAMDNITRENWLP 403
           F D ID ++++  SIS I  N  V ++++ T+ SR+++      GC  +  NIT  +W  
Sbjct: 256 FNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKEL--VNAGCNLSTLNITLLSWSK 313

Query: 404 SNYKEK 409
             Y+ K
Sbjct: 314 KRYEAK 319


>1OXJ-A nrPDB
          Length = 173

 Score = 29.3 bits (64), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 153 LNSIKPFDPQINITKKMPFPYYEDQQLGALSWILD 187
           L  +K  D   N  ++ P+   +D+ LG L WILD
Sbjct: 113 LRFLKVIDIVTNTLQQDPYAVQDDETLGVLMWILD 147


>6FYX-o nrPDB
          Length = 964

 Score = 28.9 bits (63), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 15/100 (15%)

Query: 458 VANPNSSKNKHKQRIGFFILMNLTLVEQIV--EKSELNLMLAGEGHSRL--------ERL 507
           V      K KH +        +  + +Q +  EK+ +   L  E H RL        E +
Sbjct: 605 VKRSQEQKQKHMEHAALHAEQDAEVRQQRILEEKAAIEAKLEEEAHRRLIEKKKREFEAI 664

Query: 508 KKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKE 547
           K+R I+ M+++      N    V+ID +  KS D + IK+
Sbjct: 665 KEREITKMITE-----VNAKGHVYIDPNEAKSLDLDTIKQ 699


>3SH1-A nrPDB
          Length = 230

 Score = 28.5 bits (62), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 529 SVFIDSSGKKSKDKEQIKEKFRKFN-EGFE-DLVSKTKQYKLSDPSLKVTLKSEIISLVM 586
           S   D +G  S++      KF  ++  G+E DL + T Q  LS  S   + K EI+S   
Sbjct: 133 SFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLS--SYYASSKYEILSATQ 190

Query: 587 PMYERFYSRYKDSFKNPRKHIKY 609
              ERFY   K+ + +    +K+
Sbjct: 191 TRSERFYECCKEPYPDVNLVVKF 213


>1BY1-A nrPDB
          Length = 209

 Score = 28.5 bits (62), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 263 QYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVKK 317
           +Y++    VLS  L PL ++  KL  AN+  +  NLE    F   LV+S+ +  K
Sbjct: 27  EYSKELQTVLSTYLRPLQTS-EKLSSANISYLMGNLEEICSFQQMLVQSLEECTK 80


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2B7M-A nrPDB                                                         1063   0.0  
2PFT-A nrPDB                                                          259   2e-69
4RL5-A nrPDB                                                          146   3e-35

Sequences not found previously or not previously below threshold:

5HXA-A nrPDB                                                           35   0.13 
3QC1-A nrPDB                                                           33   0.48 
5CO0-O nrPDB                                                           32   0.56 
6JCX-F nrPDB                                                           32   0.92 
2FSI-A nrPDB                                                           32   1.0  
5GW4-d nrPDB                                                           31   1.2  
4IYP-A nrPDB                                                           31   1.9  
2R17-C nrPDB                                                           31   1.9  
5TVG-A nrPDB                                                           31   2.0  
5T12-A nrPDB                                                           30   2.9  
6FXG-A nrPDB                                                           30   3.1  
4KPT-A nrPDB                                                           30   3.1  
1Q3T-A nrPDB                                                           30   3.3  
1BY1-A nrPDB                                                           30   3.4  
1OXJ-A nrPDB                                                           30   3.8  
5WLZ-C nrPDB                                                           29   6.2  
3S4L-A nrPDB                                                           29   7.7  
1NO4-A nrPDB                                                           29   9.0  
5WPN-A nrPDB                                                           29   9.8  


CONVERGED!
>2B7M-A nrPDB
          Length = 566

 Score = 1063 bits (2748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/561 (100%), Positives = 561/561 (100%)

Query: 63  NIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANRE 122
           NIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANRE
Sbjct: 6   NIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANRE 65

Query: 123 ENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKKMPFPYYEDQQLGAL 182
           ENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKKMPFPYYEDQQLGAL
Sbjct: 66  ENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKKMPFPYYEDQQLGAL 125

Query: 183 SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSY 242
           SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSY
Sbjct: 126 SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSY 185

Query: 243 TEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFG 302
           TEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFG
Sbjct: 186 TEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFG 245

Query: 303 FFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTI 362
           FFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTI
Sbjct: 246 FFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTI 305

Query: 363 PSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWED 422
           PSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWED
Sbjct: 306 PSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWED 365

Query: 423 HNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTL 482
           HNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTL
Sbjct: 366 HNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTL 425

Query: 483 VEQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDK 542
           VEQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDK
Sbjct: 426 VEQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDK 485

Query: 543 EQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKN 602
           EQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKN
Sbjct: 486 EQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKN 545

Query: 603 PRKHIKYTPDELTTVLNQLVR 623
           PRKHIKYTPDELTTVLNQLVR
Sbjct: 546 PRKHIKYTPDELTTVLNQLVR 566


>2PFT-A nrPDB
          Length = 571

 Score =  259 bits (662), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 126/312 (40%), Gaps = 40/312 (12%)

Query: 319 LRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSR 378
           L+G      N L      +  +      D  D I    +    +P +  V E T + +  
Sbjct: 286 LQGTAASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILF 345

Query: 379 LRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCIDTL 438
           L++  +++    GAM               +E +    + + E    LLS +I   +  L
Sbjct: 346 LQQLLDFQETA-GAM------------LASQETSSSATSYSSEFSKRLLSTYICKVLGNL 392

Query: 439 AVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTLVEQIVEKSELNLMLAG 498
            +NL  K+++     ++P ++               F+  N   + + +EKSEL + L  
Sbjct: 393 QLNLLSKSKVY----EDPALS-------------AIFLHNNYNYILKSLEKSEL-IQLVA 434

Query: 499 EGHSRLERLKKRYISYMVS----DWRDLTANLMD---SVFIDSSGKKSKDKEQIKEKFRK 551
                 ER  + +I   +      W  +T  + +    VF      + K+++ IKE+F+ 
Sbjct: 435 VTQKTAERSYREHIEQQIQTYQRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKG 494

Query: 552 FNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDS--FKNPRKHIKY 609
           FN+G E+L    K + + D   +  ++     +V   Y  F  RY      KNP K+IKY
Sbjct: 495 FNDGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKY 554

Query: 610 TPDELTTVLNQL 621
             +++  ++++L
Sbjct: 555 RVEQVGDMIDRL 566


>4RL5-A nrPDB
          Length = 565

 Score =  146 bits (368), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 96/214 (44%), Gaps = 28/214 (13%)

Query: 419 NWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILM 478
           N +D N  L+      +  L  NL+ K++      ++P + +              F++ 
Sbjct: 358 NGDDSNSQLASVTMRIMQALQNNLDGKSKQY----KDPALTH-------------LFLMN 400

Query: 479 NLTLVEQIVEKSELNLMLAGEGHSRLERLKKRYI-SYMVSDWRDLTAN-------LMDSV 530
           N+  + + V +SE   +L  +   R  R+ +++   Y    W  +  +            
Sbjct: 401 NIHYMVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRVAWTKILQSSSAQGLTSSGGG 460

Query: 531 FIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYE 590
            ++        +  +KE+F+ FN  F++L  +  Q+ + D  L+ +L+  +  +++P Y 
Sbjct: 461 SLEGGNSSGVSRGLLKERFKMFNMQFDELHQRQSQWTVPDTELRESLRLAVAEVLLPAYR 520

Query: 591 RFYSRYK---DSFKNPRKHIKYTPDELTTVLNQL 621
            F  R+    +S KNP+K+IKYT ++L  +L +L
Sbjct: 521 SFLKRFGPLVESGKNPQKYIKYTAEDLERLLGEL 554


>5HXA-A nrPDB
          Length = 483

 Score = 34.7 bits (78), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 369 TEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWEDHNVLLS 428
           T A V T  R+R+  E + G +       + +W P  Y  ++Y          + N+L++
Sbjct: 309 TRADVQTYQRIRQTLEGEAGRING--RFAQLDWTPIQYLNRKY----------ERNLLMA 356

Query: 429 CFISDCIDTLA-----VNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTLV 483
            F    +  +      +NL  K  +A     +P V   +      +Q  G  ++    L 
Sbjct: 357 LFRQSQVGYVTPLRDGMNLVAKEYVASQDPADPGVLVLSQFAGAAEQLPGALVVNPFDL- 415

Query: 484 EQIVEKSELNLML-AGEGHSRLERLKKRYISYMVSDWRD 521
            Q+ E  E  L +   E  +R   +        +S WRD
Sbjct: 416 SQMAEALERALSMPLAERQARHADMMAPMRENNLSVWRD 454


>3QC1-A nrPDB
          Length = 243

 Score = 32.8 bits (73), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 98  KQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIK 157
           KQ  +V H+L  +   ++SGQA+ E   E+H  L HL + I  S           L  ++
Sbjct: 184 KQKKEVEHRLSALKSAVESGQADDERVREYH--LLHLRRWIAVS-----------LEELE 230

Query: 158 PFDPQINITKK 168
             D +I I K+
Sbjct: 231 SIDQEIKILKE 241


>5CO0-O nrPDB
          Length = 324

 Score = 32.4 bits (72), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 333 CTQEVRQ-----------VTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTM-SRLR 380
           CT+E  Q           + +  F D ID ++++  SIS I  N  V ++++ T+ SR++
Sbjct: 233 CTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIK 292

Query: 381 KFSEYKNGCLGAMDNITRENWLPSNYKEK 409
           +      GC  +  NIT  +W    Y+ K
Sbjct: 293 EL--VNAGCNLSTLNITLLSWSKKRYEAK 319


>6JCX-F nrPDB
          Length = 218

 Score = 31.6 bits (70), Expect = 0.92,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 32/125 (25%)

Query: 500 GHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDL 559
            + + +R    Y +  ++DW+     L  +    S+G +S + E ++             
Sbjct: 95  SYRKKQRQPAEYPTEQITDWQ-----LASNAEHSSTGLRSAEVEALE------------- 136

Query: 560 VSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPRKHIKYTPDE-LTTVL 618
                   L D  +K  L++      M +Y      Y D    P K I    D  + TV+
Sbjct: 137 -------ALPDTEIKEALQALPEEFRMAVY------YADVEGFPYKEIAEIMDTPIGTVM 183

Query: 619 NQLVR 623
           ++L R
Sbjct: 184 SRLHR 188


>2FSI-A nrPDB
          Length = 853

 Score = 31.6 bits (70), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 18/132 (13%)

Query: 448 IALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTLVEQIVEKSELNLMLAGEGHSRLERL 507
           IA   ++EP++      +    Q I  +      +  +++   E  +ML       L+ L
Sbjct: 712 IAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVML-----QTLDSL 766

Query: 508 KKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYK 567
            K +++ M          L   + +    +K   +E  +E F  F    E L     +Y+
Sbjct: 767 WKEHLAAM--------DYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESL-----KYE 813

Query: 568 LSDPSLKVTLKS 579
           +     KV ++ 
Sbjct: 814 VISTLSKVQVRM 825


>5GW4-d nrPDB
          Length = 528

 Score = 31.2 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 200 DILVGERSKLILKCMAFLEPFAK---EISTAKNAPYEKGSSGMNSYTEALLG 248
           +I++      ILK MA L P A+   E+S A+++    G++ +   T ALLG
Sbjct: 54  EIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLG 105


>4IYP-A nrPDB
          Length = 222

 Score = 30.9 bits (68), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 13/71 (18%)

Query: 98  KQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIK 157
           KQ  ++ H+L  M   ++SGQA+ E   E++  L HL++ I  S           L  I+
Sbjct: 151 KQKKELEHRLSAMKSAVESGQADDERVREYY--LLHLQRWIDIS-----------LEEIE 197

Query: 158 PFDPQINITKK 168
             D +I I ++
Sbjct: 198 SIDQEIKILRE 208


>2R17-C nrPDB
          Length = 298

 Score = 30.9 bits (68), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 82  SKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHL 134
           ++Y    +K  + V ++   Q++ K+ + L +++S +   + N  FH  L HL
Sbjct: 243 NRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHL 295


>5TVG-A nrPDB
          Length = 481

 Score = 30.9 bits (68), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 369 TEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWEDHNVLLS 428
           T + V T  R+R+  E + G +       + +W P  Y  ++Y          + N+L++
Sbjct: 310 TRSDVQTYQRIRETLEREAGRING--RFAQLDWTPIQYLNRKY----------ERNLLMA 357

Query: 429 CFISDCIDTLA-----VNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTLV 483
            F    +  +      +NL  K  +A     +P V   +       +  G  ++      
Sbjct: 358 FFRMSQVGYVTPLRDGMNLVAKEYVASQDPADPGVLVLSEFAGAAAELGGALLVNPYDHA 417

Query: 484 EQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRD 521
           +     +    M   E  +R E    +  +  +S WRD
Sbjct: 418 QMADALARALAMPLAERQARHEENLAQLRNNDLSVWRD 455


>5T12-A nrPDB
          Length = 255

 Score = 30.1 bits (66), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 23/126 (18%)

Query: 517 SDWRDLTANLMDSVFIDSSGKKSKDKEQIK-------EKFRKFNEGFEDLVSKTK----- 564
             W+D T  LM+ V+  S+   + ++E++         +FR++++ F     K       
Sbjct: 15  EGWQDATLPLMEQVYQASTLDPALERERLTGALEEAANEFRRYSKRFAAGAQKETAAIFD 74

Query: 565 --QYKLSDPSLKVTLKSEIIS------LVMPMYERFYSRYKDSFKNPRKHIKYTPDELTT 616
              + LSD  L+  L +E+         V  + E+F  ++     N   ++K    +L  
Sbjct: 75  LYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVIEKFAEQFAALSDN---YLKERAGDLRA 131

Query: 617 VLNQLV 622
           +  +L+
Sbjct: 132 LGQRLL 137


>6FXG-A nrPDB
          Length = 227

 Score = 30.1 bits (66), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 377 SRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQ 414
           S+L  +S+ K   +GA +    + WL  N K+  YT++
Sbjct: 100 SKLSDYSDLKGKAVGAKNGTAAQTWLQENQKKYGYTIK 137


>4KPT-A nrPDB
          Length = 251

 Score = 30.1 bits (66), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 377 SRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQ 414
           S+L  +S+ K   +GA +    + WL  N K+  YT++
Sbjct: 124 SKLSDYSDLKGKAVGAKNGTAAQTWLQENQKKYGYTIK 161


>1Q3T-A nrPDB
          Length = 236

 Score = 30.1 bits (66), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 456 PDVANPNSSKNKHKQRIGFFILMNLTLVEQIVEKSELNLMLAGEGHSRLERLKKRYISYM 515
           P+V     S  +   + G  ++    +   ++ ++EL + L      R ER  K  I+  
Sbjct: 119 PEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKG 178

Query: 516 VS-DWRDLTANLMDSVFIDSSGKKSKDKE 543
           +  D   L   +    + DS  + S  K+
Sbjct: 179 IETDLETLKKEIAARDYKDSHRETSPLKQ 207


>1BY1-A nrPDB
          Length = 209

 Score = 30.1 bits (66), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 262 SQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVKK 317
           ++Y++    VLS  L PL ++  KL  AN+  +  NLE    F   LV+S+ +  K
Sbjct: 26  NEYSKELQTVLSTYLRPLQTS-EKLSSANISYLMGNLEEICSFQQMLVQSLEECTK 80


>1OXJ-A nrPDB
          Length = 173

 Score = 29.7 bits (65), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 153 LNSIKPFDPQINITKKMPFPYYEDQQLGALSWILD 187
           L  +K  D   N  ++ P+   +D+ LG L WILD
Sbjct: 113 LRFLKVIDIVTNTLQQDPYAVQDDETLGVLMWILD 147


>5WLZ-C nrPDB
          Length = 216

 Score = 28.9 bits (63), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 286 LFGANLKIVRSNLENFGFFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLF 345
            F  NLK V   L   G F+ E VE+  +V + L    L   NLLQ   +E+R V +   
Sbjct: 98  FFKKNLKDVSFRL---GSFNLEKVENPAEVIRELIDYALDRNNLLQAELEELRAVVEQTE 154

Query: 346 RD---AIDRIIKKANSISTIPSNN 366
           R    A   +I+ +  +  + S N
Sbjct: 155 RSRKLAEQELIETSERVQLLHSQN 178


>3S4L-A nrPDB
          Length = 244

 Score = 28.5 bits (62), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 532 IDSSGKKSKDKEQIKEKFRKFN---EGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPM 588
           I +  KK    E + +K +KF+   E FEDL+ K   Y + D     + K +II  V+ M
Sbjct: 132 IRNLKKKELTAEVVLDKLKKFDGMIEDFEDLIKKLIGYSIGDIIKNDSNKDDIIRFVIEM 191


>1NO4-A nrPDB
          Length = 97

 Score = 28.5 bits (62), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 567 KLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPRK 605
           KL DP L  + ++E +  +   Y  F S Y D  K+  K
Sbjct: 13  KLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHEK 51


>5WPN-A nrPDB
          Length = 171

 Score = 28.5 bits (62), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 483 VEQIVEKSELNLMLAGEGHSRL---ERLKKRYISYMVSDWRDLTANLMD-SVFIDSSGKK 538
           +E+ V +S L+L   G GH      + L++ Y+   V   ++L+  + +        G+ 
Sbjct: 103 LEKNVNQSLLDLHKVGAGHDDAHLCDFLEEHYLEEQVKSIKELSDYVTNLKRVGPGLGEY 162

Query: 539 SKDKEQI 545
             DKE +
Sbjct: 163 MFDKESL 169


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.313    0.129    0.345 

Lambda     K      H
   0.267   0.0400    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,771,090
Number of Sequences: 36641
Number of extensions: 838277
Number of successful extensions: 2807
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2777
Number of HSP's gapped (non-prelim): 67
length of query: 623
length of database: 10,336,785
effective HSP length: 103
effective length of query: 520
effective length of database: 6,562,762
effective search space: 3412636240
effective search space used: 3412636240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)