BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P18408 (261 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2OQ2-A nrPDB 545 e-156 4BWV-A nrPDB 121 2e-28 2O8V-A nrPDB 99 2e-21 1SUR-A nrPDB 91 6e-19 2GOY-A nrPDB 80 7e-16 1DII-A nrPDB 33 0.088 3FWK-A nrPDB 33 0.099 1XZN-A nrPDB 31 0.45 4P83-A nrPDB 30 1.2 6HIV-Bb nrPDB 29 2.5 3K1D-A nrPDB 28 2.8 2WSI-A nrPDB 28 3.3 3A5Z-A nrPDB 28 3.8 5JMQ-A nrPDB 28 4.5 3IEB-A nrPDB 28 4.7 4IRQ-A nrPDB 27 6.3 >2OQ2-A nrPDB Length = 261 Score = 545 bits (1404), Expect = e-156, Method: Compositional matrix adjust. Identities = 261/261 (100%), Positives = 261/261 (100%) Query: 1 MKTYHLNNDIIVTQEQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDM 60 MKTYHLNNDIIVTQEQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDM Sbjct: 1 MKTYHLNNDIIVTQEQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDM 60 Query: 61 LSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFAS 120 LSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFAS Sbjct: 61 LSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFAS 120 Query: 121 KYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNG 180 KYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNG Sbjct: 121 KYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNG 180 Query: 181 ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGK 240 ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGK Sbjct: 181 ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGK 240 Query: 241 AKTECGIHEASRFAQFLKQDA 261 AKTECGIHEASRFAQFLKQDA Sbjct: 241 AKTECGIHEASRFAQFLKQDA 261 >4BWV-A nrPDB Length = 283 Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 19/210 (9%) Query: 55 LVTIDMLSKLSE-KYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCE 113 +V +D+L ++ +++FIDT H FP+T +E+E++Y HV+ Sbjct: 80 VVILDLLHRIGAFSDNKVKIIFIDTFHLFPETYKFLSEVEERY----GFKAHVFHAADVN 135 Query: 114 SEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSII 173 ++ + +K+G L+ D ++YD + KVEP RA K L + A+ GRR+ G+ R+ L + Sbjct: 136 NKEAYDAKFGSDLFITDIEEYDRICKVEPFSRALKTLEVDAMINGRRRDHGAERAHLEVF 195 Query: 174 EIDELNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVK-----E 228 E ++ +K+ PL W F Y+ ++PY+ L D G+ SIGD ST PV E Sbjct: 196 EEGKM---VKVQPLAYWEFRDCWDYLTKYSLPYHPLHDQGFPSIGDVQSTIPVPREKWFE 252 Query: 229 GEDERAGRWK------GKAKTECGIHEASR 252 ER+GR++ G AKTECGIH R Sbjct: 253 YAGERSGRFQGLTNPDGSAKTECGIHVGGR 282 >2O8V-A nrPDB Length = 252 Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 18/229 (7%) Query: 21 NEQLIKLETPQEIIAWSIVTFPHLFQ-TTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTL 79 N +L KL+ + AW++ P + +++FG+ V++ +++++ +P ++ DT Sbjct: 25 NAELEKLDAEGRV-AWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPD--IP-VILTDTG 80 Query: 80 HHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDD---KYDY 136 + FP+T +E+ K + VY+ ES A ++YG LWE+ + KY+ Sbjct: 81 YLFPETYRFIDELTDKL----KLNLKVYR--ATESAAWQEARYGK-LWEQGVEGIEKYND 133 Query: 137 LAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGILKINPLINWTFEQVK 196 + KVEP +RA KEL+ F G R+ Q +R+ L ++ I G+ K+ P+I+W + Sbjct: 134 INKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQR--GVFKVLPIIDWDNRTIY 191 Query: 197 QYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKAKTEC 245 QY+ + + Y+ L D GY S+GD H+T+ + G E R+ G K EC Sbjct: 192 QYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFG-LKREC 239 >1SUR-A nrPDB Length = 215 Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 17/205 (8%) Query: 21 NEQLIKLETPQEIIAWSIVTFPHLFQ-TTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTL 79 N +L KL+ + AW++ P + +++FG+ V++ +++++ +P ++ DT Sbjct: 24 NAELEKLDAEGRV-AWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPD--IP-VILTDTG 79 Query: 80 HHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDD---KYDY 136 + FP+T +E+ K + VY+ ES A ++YG LWE+ + KY+ Sbjct: 80 YLFPETYRFIDELTDKL----KLNLKVYR--ATESAAWQEARYGK-LWEQGVEGIEKYND 132 Query: 137 LAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGILKINPLINWTFEQVK 196 + KVEP +RA KEL+ F G R+ Q +R+ L ++ I G+ K+ P+I+W + Sbjct: 133 INKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQR--GVFKVLPIIDWDNRTIY 190 Query: 197 QYIDANNVPYNELLDLGYRSIGDYH 221 QY+ + + Y+ L D GY S+GD H Sbjct: 191 QYLQKHGLKYHPLWDEGYLSVGDTH 215 >2GOY-A nrPDB Length = 275 Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 19/240 (7%) Query: 28 ETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLT 87 ++PQ+I+ + F + G +V +DM KL+ ++ +DT P+T Sbjct: 40 KSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNV---KVFSLDTGRLHPETYR 96 Query: 88 LKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDD-DKYDYLAKVEPAHRA 146 +++ + Y I V PD E + G F + +D + + K+EP R Sbjct: 97 FIDQVREHY----GIAIDVLSPDPRLLEP-LVKEKGLFSFYRDGHGECCGIRKIEPLKR- 150 Query: 147 YKELHISAVFTGRRKSQGSA-RSQLSIIEIDEL-----NGILKINPLINWTFEQVKQYID 200 K + A TG+R+ Q RSQ++++EID + K NPL + T E+V YI Sbjct: 151 -KLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIR 209 Query: 201 ANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKAKT--ECGIHEASRFAQFLK 258 +PYN L + GY SIG T+PV + ER GRW + T ECG+H + ++ L+ Sbjct: 210 MLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKALE 269 >1DII-A nrPDB Length = 521 Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 12/68 (17%) Query: 149 ELHISAVFTGRRKSQGSA----RSQLSIIEIDELNGILKINPLINW-------TFEQVKQ 197 ++ I + TGR GSA R Q+ I+++ ++N I+KI+P + + TF Q+ Sbjct: 81 KIPIWTISTGRNFGYGSAAPVQRGQV-ILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYD 139 Query: 198 YIDANNVP 205 YI NN+P Sbjct: 140 YIQENNLP 147 >3FWK-A nrPDB Length = 308 Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 4/107 (3%) Query: 121 KYGDFLWEKDDDKYDYLAKV-EPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEID-EL 178 +Y L+E D DK + +A+ E + + E A+ G R + I + D Sbjct: 131 RYSLSLYESDRDKCETMAEAFETFLQVFPE--TKAIVIGIRHTDPFGEHLKPIQKTDANW 188 Query: 179 NGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQP 225 ++ PL++W + ++ +N P EL G+ S+G+ T P Sbjct: 189 PDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLP 235 >1XZN-A nrPDB Length = 179 Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%) Query: 145 RAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGI 181 R ++EL I A F G K+ ++RS+L ++E+ E++GI Sbjct: 137 RGHRELPIRADFVG--KNVPTSRSELIVVELSEVDGI 171 >4P83-A nrPDB Length = 182 Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 2/35 (5%) Query: 145 RAYKELHISAVFTGRRKSQGSARSQLSIIEIDELN 179 R ++EL I A F G K+ ++RS+L ++E+DE++ Sbjct: 139 RGHRELPIRADFVG--KNVPTSRSELIVVELDEVD 171 >6HIV-Bb nrPDB Length = 162 Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 163 QGSARSQLSIIEIDELNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHS 222 Q + ++L ++ +E G+ L W ++ V Q V YN L++ GY S DY + Sbjct: 94 QQKSAAELFVLASNESRGLNSAAALRRWGYDSVVQ------VDYNTLVEAGYVSRCDYAT 147 Query: 223 TQPVKEGEDERAG 235 E +G Sbjct: 148 AGTKDSAEQAVSG 160 >3K1D-A nrPDB Length = 722 Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%) Query: 175 IDELNGILKINPLINWTFEQVKQ---YIDANNVPYNELLDLGYRSIGDYHSTQPVKEGED 231 + ++N I + +P + W+ + + +IDAN+ N L + Y S G + G + Sbjct: 599 VRDINDIYRCHPAL-WSLDTTPEGYSWIDANDSANNVLSFMRYGSDGSVLACVFNFAGAE 657 Query: 232 ER--------AGRWKGKAKTECGIHEASRFAQFLKQDA 261 R AGRW+ T+ I+ S DA Sbjct: 658 HRDYRLGLPRAGRWREVLNTDATIYHGSGIGNLGGVDA 695 >2WSI-A nrPDB Length = 306 Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust. Identities = 11/45 (24%), Positives = 24/45 (53%) Query: 181 ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQP 225 +++ PL++W + ++ +N P L G+ SIG +++ P Sbjct: 188 FMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGFTSIGGINNSLP 232 >3A5Z-A nrPDB Length = 328 Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 24 LIKLETPQEIIAWSIVTFPHL--FQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHH 81 ++++ETP ++ + VT HL F+T G +++ S +Y+M LL Sbjct: 38 VLEVETP--CMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPV 95 Query: 82 FPQTLTLKNEIEKKYYQPKNQTIHVYKP 109 F + +NE +Y+ P+ + Y+P Sbjct: 96 FQLCRSFRNEEMGRYHNPEFTMLEWYRP 123 >5JMQ-A nrPDB Length = 446 Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 65 SEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESE 115 +EK Y ++LF D + F + I++ + +PK+ H+ KP+ C SE Sbjct: 267 AEKDYHSKVLFWDNAYEFNLSALKSLAIKEFFSRPKSN--HILKPEDCLSE 315 >3IEB-A nrPDB Length = 218 Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 176 DELNGILKINPLINWTFEQVKQYID 200 DELNG ++I NWT + K ++D Sbjct: 106 DELNGEIQIEIYGNWTMQDAKAWVD 130 >4IRQ-A nrPDB Length = 251 Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 10/107 (9%) Query: 127 WEKDDDKYDY-LAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSII-EIDELNGILKI 184 WE+D + LA + P ++EL + R S+ R + ++ ++D Sbjct: 8 WEEDASWGPHRLAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFR--FNR 65 Query: 185 NPLINWTFEQVKQ---YI---DANNVPYNELLDLGYRSIGDYHSTQP 225 LIN F + YI D + +P NE LD G+ G +H P Sbjct: 66 AALINVGFLESSNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASP 112 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2OQ2-A nrPDB 402 e-113 2GOY-A nrPDB 290 3e-79 2O8V-A nrPDB 282 1e-76 4BWV-A nrPDB 272 1e-73 1SUR-A nrPDB 251 2e-67 Sequences not found previously or not previously below threshold: 1ZUN-A nrPDB 64 7e-11 3FWK-A nrPDB 44 5e-05 2WSI-A nrPDB 41 4e-04 5EO6-A nrPDB 31 0.52 6HIV-Bb nrPDB 30 1.0 4D18-F nrPDB 30 1.5 1DII-A nrPDB 29 1.7 5ZI1-A nrPDB 29 2.3 5DMB-A nrPDB 29 2.7 2Z4F-A nrPDB 28 3.6 3TI9-A nrPDB 28 3.7 4GOU-A nrPDB 28 3.7 4R14-A nrPDB 28 3.9 3LPA-A nrPDB 28 4.0 5SVC-A nrPDB 28 4.3 6IRX-A nrPDB 27 5.9 3B69-A nrPDB 27 9.4 >2OQ2-A nrPDB Length = 261 Score = 402 bits (1034), Expect = e-113, Method: Composition-based stats. Identities = 261/261 (100%), Positives = 261/261 (100%) Query: 1 MKTYHLNNDIIVTQEQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDM 60 MKTYHLNNDIIVTQEQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDM Sbjct: 1 MKTYHLNNDIIVTQEQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDM 60 Query: 61 LSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFAS 120 LSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFAS Sbjct: 61 LSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFAS 120 Query: 121 KYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNG 180 KYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNG Sbjct: 121 KYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNG 180 Query: 181 ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGK 240 ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGK Sbjct: 181 ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGK 240 Query: 241 AKTECGIHEASRFAQFLKQDA 261 AKTECGIHEASRFAQFLKQDA Sbjct: 241 AKTECGIHEASRFAQFLKQDA 261 >2GOY-A nrPDB Length = 275 Score = 290 bits (743), Expect = 3e-79, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 19/240 (7%) Query: 28 ETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLT 87 ++PQ+I+ + F + G +V +DM KL+ ++ +DT P+T Sbjct: 40 KSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNV---KVFSLDTGRLHPETYR 96 Query: 88 LKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDD-DKYDYLAKVEPAHRA 146 +++ + Y I V PD E + G F + +D + + K+EP R Sbjct: 97 FIDQVREHY----GIAIDVLSPDPRLLEP-LVKEKGLFSFYRDGHGECCGIRKIEPLKR- 150 Query: 147 YKELHISAVFTGRRKSQGSA-RSQLSIIEIDEL-----NGILKINPLINWTFEQVKQYID 200 K + A TG+R+ Q RSQ++++EID + K NPL + T E+V YI Sbjct: 151 -KLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIR 209 Query: 201 ANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKAKT--ECGIHEASRFAQFLK 258 +PYN L + GY SIG T+PV + ER GRW + T ECG+H + ++ L+ Sbjct: 210 MLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKALE 269 >2O8V-A nrPDB Length = 252 Score = 282 bits (720), Expect = 1e-76, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 18/229 (7%) Query: 21 NEQLIKLETPQEIIAWSIVTFPHLFQ-TTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTL 79 N +L KL+ + AW++ P + +++FG+ V++ +++++ ++ DT Sbjct: 25 NAELEKLDAEGRV-AWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIP---VILTDTG 80 Query: 80 HHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDD---KYDY 136 + FP+T +E+ K + VY+ ES A ++YG LWE+ + KY+ Sbjct: 81 YLFPETYRFIDELTDKL----KLNLKVYR--ATESAAWQEARYGK-LWEQGVEGIEKYND 133 Query: 137 LAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGILKINPLINWTFEQVK 196 + KVEP +RA KEL+ F G R+ Q +R+ L ++ I G+ K+ P+I+W + Sbjct: 134 INKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQR--GVFKVLPIIDWDNRTIY 191 Query: 197 QYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKAKTEC 245 QY+ + + Y+ L D GY S+GD H+T+ + G E R+ G K EC Sbjct: 192 QYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFG-LKREC 239 >4BWV-A nrPDB Length = 283 Score = 272 bits (694), Expect = 1e-73, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 20/245 (8%) Query: 21 NEQLIKLETPQ-EIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSE-KYYMPELLFIDT 78 + +L LE E + ++ F A +V +D+L ++ +++FIDT Sbjct: 45 DARLQHLEAQALETLQKTVENFEKPAFPCALIAGDVVILDLLHRIGAFSDNKVKIIFIDT 104 Query: 79 LHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLA 138 H FP+T +E+E++Y HV+ ++ + +K+G L+ D ++YD + Sbjct: 105 FHLFPETYKFLSEVEERY----GFKAHVFHAADVNNKEAYDAKFGSDLFITDIEEYDRIC 160 Query: 139 KVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGILKINPLINWTFEQVKQY 198 KVEP RA K L + A+ GRR+ G+ R+ L + E ++ +K+ PL W F Y Sbjct: 161 KVEPFSRALKTLEVDAMINGRRRDHGAERAHLEVFEEGKM---VKVQPLAYWEFRDCWDY 217 Query: 199 IDANNVPYNELLDLGYRSIGDYHSTQPVK-----EGEDERAGRWK------GKAKTECGI 247 + ++PY+ L D G+ SIGD ST PV E ER+GR++ G AKTECGI Sbjct: 218 LTKYSLPYHPLHDQGFPSIGDVQSTIPVPREKWFEYAGERSGRFQGLTNPDGSAKTECGI 277 Query: 248 HEASR 252 H R Sbjct: 278 HVGGR 282 >1SUR-A nrPDB Length = 215 Score = 251 bits (641), Expect = 2e-67, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 17/205 (8%) Query: 21 NEQLIKLETPQEIIAWSIVTFPHLFQ-TTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTL 79 N +L KL+ + AW++ P + +++FG+ V++ +++++ ++ DT Sbjct: 24 NAELEKLDAEGRV-AWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIP---VILTDTG 79 Query: 80 HHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDD---KYDY 136 + FP+T +E+ K + VY+ ES A ++YG LWE+ + KY+ Sbjct: 80 YLFPETYRFIDELTDKL----KLNLKVYR--ATESAAWQEARYGK-LWEQGVEGIEKYND 132 Query: 137 LAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGILKINPLINWTFEQVK 196 + KVEP +RA KEL+ F G R+ Q +R+ L ++ I G+ K+ P+I+W + Sbjct: 133 INKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQR--GVFKVLPIIDWDNRTIY 190 Query: 197 QYIDANNVPYNELLDLGYRSIGDYH 221 QY+ + + Y+ L D GY S+GD H Sbjct: 191 QYLQKHGLKYHPLWDEGYLSVGDTH 215 >1ZUN-A nrPDB Length = 325 Score = 63.6 bits (153), Expect = 7e-11, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 36/213 (16%) Query: 23 QLIKLETPQ-EIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMP-ELLFIDTLH 80 L +LE II F + + G V + + K +P ++ +DT Sbjct: 27 HLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 86 Query: 81 HFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKV 140 F + ++++ ++ I PDG G + K+ + K Sbjct: 87 KFQEMYRFRDQMVEEMGLDL---ITHINPDGVAQ--------GINPFTHGSAKHTDIMKT 135 Query: 141 EPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELN--------------------- 179 E +A + A F G R+ + +R++ + + Sbjct: 136 EGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVN 195 Query: 180 --GILKINPLINWTFEQVKQYIDANNVPYNELL 210 +++ PL NWT + QYI +P L Sbjct: 196 KGESIRVFPLSNWTELDIWQYIYLEGIPIVPLY 228 >3FWK-A nrPDB Length = 308 Score = 44.3 bits (103), Expect = 5e-05, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 4/109 (3%) Query: 121 KYGDFLWEKDDDKYDYLAKVEPAHRAYKEL-HISAVFTGRRKSQGSARSQLSIIEIDELN 179 +Y L+E D DK + +A E + A+ G R + I + D Sbjct: 131 RYSLSLYESDRDKCETMA--EAFETFLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANW 188 Query: 180 G-ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVK 227 ++ PL++W + ++ +N P EL G+ S+G+ T P Sbjct: 189 PDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNP 237 >2WSI-A nrPDB Length = 306 Score = 41.3 bits (95), Expect = 4e-04, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 26/155 (16%) Query: 74 LFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDK 133 +FID FP E ++Y + S+ D Sbjct: 105 VFIDQEETFPTLENFVLETSERYCLSL-----------------YESQRQSGASVNMADA 147 Query: 134 YDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGIL-KINPLINWTF 192 + K+ P A+ G R + + I D ++ PL++W Sbjct: 148 FRDFIKIYP--------ETEAIVIGIRHTDPFGEALKPIQRTDSNWPDFMRLQPLLHWDL 199 Query: 193 EQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVK 227 + ++ +N P L G+ SIG +++ P Sbjct: 200 TNIWSFLLYSNEPICGLYGKGFTSIGGINNSLPNP 234 >5EO6-A nrPDB Length = 324 Score = 30.9 bits (68), Expect = 0.52, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 13/93 (13%) Query: 174 EIDELNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDE- 232 + G L + L W FE +YI A Y I + H QP E + E Sbjct: 194 DEQRGVGGLFFDDLNCWDFETCFKYIQAVGNGYL----NAILPIFEKHREQPYTEAQREF 249 Query: 233 ---RAGRW-----KGKAKTECGIHEASRFAQFL 257 R GR+ T G+ R L Sbjct: 250 QLYRRGRYVEYNLVYDRGTLFGLQTGGRIESIL 282 >6HIV-Bb nrPDB Length = 162 Score = 30.1 bits (66), Expect = 1.0, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 15/117 (12%) Query: 110 DGCESEADFASKYGDFLWE-KDDDKYDYLAKVEPAHRAYKELHISAVFTGRR---KSQGS 165 D + +S+ G F+ + +D + K+ P R+ LH + +G Q Sbjct: 42 DSHKLREKLSSRKGIFVIDVRDPGE----RKLNPVPRSV-ALHHHDLLSGASCPILPQQK 96 Query: 166 ARSQLSIIEIDELNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHS 222 + ++L ++ +E G+ L W ++ V Q V YN L++ GY S DY + Sbjct: 97 SAAELFVLASNESRGLNSAAALRRWGYDSVVQ------VDYNTLVEAGYVSRCDYAT 147 >4D18-F nrPDB Length = 331 Score = 29.7 bits (65), Expect = 1.5, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 14/118 (11%) Query: 131 DDKYDYLAKVEPAHRAYKELHISAVF-TGRRKSQGSARSQLSIIEIDELNGILKINPLIN 189 DK Y K E + +KEL + TG + EI E LK+NP+ Sbjct: 104 IDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK 163 Query: 190 WT------FEQVKQYIDAN------NVPYNELLDLGYRSIGDYHSTQPVKEGEDERAG 235 T FE V I+ + Y + R IG H + G E + Sbjct: 164 HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAER-IGVDHVARMTATGSGENST 220 >1DII-A nrPDB Length = 521 Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 12/63 (19%) Query: 154 AVFTGRRKSQGSA----RSQLSIIEIDELNGILKINPLINW-------TFEQVKQYIDAN 202 + TGR GSA R Q+ I+++ ++N I+KI+P + + TF Q+ YI N Sbjct: 86 TISTGRNFGYGSAAPVQRGQV-ILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQEN 144 Query: 203 NVP 205 N+P Sbjct: 145 NLP 147 >5ZI1-A nrPDB Length = 609 Score = 28.9 bits (63), Expect = 2.3, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 16/140 (11%) Query: 15 EQLDHWNEQLIKLET--PQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPE 72 +Q D W + ++E QEI + + L G + + + + + Sbjct: 51 KQNDLWESFMNEVEALINQEITEAVVSKALSELEGLRNALEGYTSALEAWQNNRSDKLKQ 110 Query: 73 LL----FIDTLHHFP------QTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKY 122 LL F+ T + F +++ + + Y Q N + + K +Y Sbjct: 111 LLVYERFVSTENLFKFAMPSFRSVGFEGPLLTVYAQAANLHLFLLKNAELFGAEWGMQQY 170 Query: 123 GDFLWEKD----DDKYDYLA 138 L+ + ++Y Sbjct: 171 EIDLFYNEQKGYVEEYTDHC 190 >5DMB-A nrPDB Length = 151 Score = 28.6 bits (62), Expect = 2.7, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%) Query: 17 LDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFI 76 LD + +++ Q++ + I+T F T L + I++ +L ++ + + Sbjct: 74 LDDNTLEQLQITGEQDVALYVILTVADPFDDTTANLQAPIVINVHKRLGKQVILTNTNYK 133 Query: 77 DTLHHFPQ 84 FP+ Sbjct: 134 TKHRLFPE 141 >2Z4F-A nrPDB Length = 173 Score = 28.2 bits (61), Expect = 3.6, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 20/105 (19%) Query: 115 EADFASKYGDFLWEKDDDKYDYLAKVEP------AHRAYKELHISAVFTGRRKSQGSARS 168 A+KYG E+ D + VEP LH + + + G Sbjct: 32 SESTAAKYGRLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGI 91 Query: 169 QLSIIEIDELNGILKIN------PLINWTFEQVKQYIDANNVPYN 207 + + + KIN I+W KQ +D N+ PY+ Sbjct: 92 EFA--------PMYKINYSRDGTRWISWRNRHGKQVLDGNSNPYD 128 >3TI9-A nrPDB Length = 352 Score = 28.2 bits (61), Expect = 3.7, Method: Composition-based stats. Identities = 6/28 (21%), Positives = 12/28 (42%) Query: 191 TFEQVKQYIDANNVPYNELLDLGYRSIG 218 ++ Q Y V +++ D G+ G Sbjct: 7 SYRQQWHYFSNYGVKADKVWDRGFTGQG 34 >4GOU-A nrPDB Length = 518 Score = 28.2 bits (61), Expect = 3.7, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 19/47 (40%) Query: 104 IHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKEL 150 I + K D E + ++++ + Y + K+E A K L Sbjct: 343 IKITKKDSQEVKELEVVHSQLAIFQELINTYSDINKIERISDALKLL 389 >4R14-A nrPDB Length = 181 Score = 28.2 bits (61), Expect = 3.9, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 131 DDKYDYLAKVEPAHRAYKELHISAVF-TGRRKSQGSARSQLSIIEIDELNGILKINPL 187 DK Y K E + +KEL + TG + EI E LK+NP+ Sbjct: 63 IDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 120 >3LPA-A nrPDB Length = 340 Score = 28.2 bits (61), Expect = 4.0, Method: Composition-based stats. Identities = 5/26 (19%), Positives = 13/26 (50%) Query: 189 NWTFEQVKQYIDANNVPYNELLDLGY 214 + + + Y D V +++ D+G+ Sbjct: 4 DQHYREQWHYFDRYGVKADKVWDMGF 29 >5SVC-A nrPDB Length = 776 Score = 28.2 bits (61), Expect = 4.3, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 10/92 (10%) Query: 145 RAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGILKINPLINWTFEQVKQYIDANNV 204 R K + +S G R+ + + + ++ K+ P F D+ + Sbjct: 687 RLAKSVPVSEWMKGEREKILAKDAGTQVRQM--FAASFKLGPRFEKDFRTFWSLPDSWTL 744 Query: 205 P--------YNELLDLGYRSIGDYHSTQPVKE 228 P Y + + D H+ Q V+E Sbjct: 745 PEEEIGVPTYGSRYSMDISELPDVHTVQFVEE 776 >6IRX-A nrPDB Length = 496 Score = 27.4 bits (59), Expect = 5.9, Method: Composition-based stats. Identities = 6/49 (12%), Positives = 17/49 (34%) Query: 119 ASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSAR 167 ++ F + + K V P R + ++ R+ +++ Sbjct: 110 EARKLLFKYAEAAKKMIDSRNVTPESRKVVKWNVEDTMNWLRRDHSASK 158 >3B69-A nrPDB Length = 648 Score = 27.0 bits (58), Expect = 9.4, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 153 SAVFTGRRKSQGSARSQLSIIEIDELNGILKINPLINWTFEQVKQYIDANNVPYNELLDL 212 + +Q ++S + + I+ + +L +PL N+ ++ ++ + ++ Sbjct: 286 RVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPL-NFKGRWLRDRLNLWLTDNQRIYNV 344 Query: 213 GYRSIGDYHS 222 G SIGD +S Sbjct: 345 GQVSIGDENS 354 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.128 0.342 Lambda K H 0.267 0.0393 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,002,061 Number of Sequences: 36641 Number of extensions: 384342 Number of successful extensions: 1088 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 1032 Number of HSP's gapped (non-prelim): 42 length of query: 261 length of database: 10,336,785 effective HSP length: 95 effective length of query: 166 effective length of database: 6,855,890 effective search space: 1138077740 effective search space used: 1138077740 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 58 (27.0 bits)