BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P18239 (318 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4C9G-A nrPDB 644 0.0 4C9J-A nrPDB 570 e-163 6GCI-A nrPDB 480 e-136 1OKC-A nrPDB 291 3e-79 2LCK-A nrPDB 86 2e-17 2IO8-A nrPDB 30 1.8 6BPM-C nrPDB 29 2.1 >4C9G-A nrPDB Length = 318 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MSSNAQVKTPLPPAPAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQ 60 MSSNAQVKTPLPPAPAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQ Sbjct: 1 MSSNAQVKTPLPPAPAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQ 60 Query: 61 GTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKE 120 GTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKE Sbjct: 61 GTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKE 120 Query: 121 EGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKT 180 EGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKT Sbjct: 121 EGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKT 180 Query: 181 LKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTG 240 LKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTG Sbjct: 181 LKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTG 240 Query: 241 ASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAG 300 ASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAG Sbjct: 241 ASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAG 300 Query: 301 VISMYDQLQMILFGKKFK 318 VISMYDQLQMILFGKKFK Sbjct: 301 VISMYDQLQMILFGKKFK 318 >4C9J-A nrPDB Length = 322 Score = 570 bits (1469), Expect = e-163, Method: Compositional matrix adjust. Identities = 274/305 (89%), Positives = 296/305 (97%) Query: 14 APAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDC 73 + A ++E+NF I+FLMGGVSAA+AKTAASPIERVK+LIQNQDEM+KQGTLD+KY+GI+DC Sbjct: 18 SDAKQQETNFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDC 77 Query: 74 FKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAGNLAS 133 FKRTA QEG+ISFWRGNTANVIRYFPTQALNFAFKDKIK MFGFKKEEGY KWFAGNLAS Sbjct: 78 FKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKEEGYGKWFAGNLAS 137 Query: 134 GGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKTLKSDGVAGLYRGF 193 GGAAGALSLLFVYSLD+ARTRLAAD+KSSKKGGARQFNGL DVYKKTLKSDG+AGLYRGF Sbjct: 138 GGAAGALSLLFVYSLDFARTRLAADAKSSKKGGARQFNGLTDVYKKTLKSDGIAGLYRGF 197 Query: 194 LPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTGASTCSYPLDTVRR 253 +PSVVGIVVYRGLYFGM+DSLKPL+LTGSL+GSFLASFLLGWVVTTGASTCSYPLDTVRR Sbjct: 198 MPSVVGIVVYRGLYFGMFDSLKPLVLTGSLDGSFLASFLLGWVVTTGASTCSYPLDTVRR 257 Query: 254 RMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYDQLQMILF 313 RMMMTSGQAVKY+GA DCL+KIVA+EGVGSLFKGCGANILR VAGAGVISMYDQLQMILF Sbjct: 258 RMMMTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILF 317 Query: 314 GKKFK 318 GKKFK Sbjct: 318 GKKFK 322 >6GCI-A nrPDB Length = 315 Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/320 (73%), Positives = 272/320 (85%), Gaps = 11/320 (3%) Query: 1 MSSNAQVKT-PLPPAPAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLK 59 MS+ + K +PP F++DFLMGGVSAAV+KTAA+PIER+KLL+QNQDEM+K Sbjct: 1 MSNKQETKILGMPP---------FVVDFLMGGVSAAVSKTAAAPIERIKLLVQNQDEMIK 51 Query: 60 QGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKK 119 G LDR+Y GI+DCF+RT EG+++ WRGNTANVIRYFPTQALNFAF+DK KAMFG+KK Sbjct: 52 AGRLDRRYNGIIDCFRRTTADEGLMALWRGNTANVIRYFPTQALNFAFRDKFKAMFGYKK 111 Query: 120 E-EGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYK 178 + +GYAKW AGNLASGGAAGA SLLFVYSLDYARTRLA D+KS+K GGARQFNGLIDVY+ Sbjct: 112 DKDGYAKWMAGNLASGGAAGATSLLFVYSLDYARTRLANDAKSAKGGGARQFNGLIDVYR 171 Query: 179 KTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVT 238 KTL SDG+AGLYRGF PSV GIVVYRGLYFGMYDS+KP++L G L +FLASFLLGW VT Sbjct: 172 KTLASDGIAGLYRGFGPSVAGIVVYRGLYFGMYDSIKPVVLVGPLANNFLASFLLGWCVT 231 Query: 239 TGASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAG 298 TGA SYPLDTVRRRMMMTSG+AVKY + D R+I+A EGV SLFKG GANILRGVAG Sbjct: 232 TGAGIASYPLDTVRRRMMMTSGEAVKYKSSIDAFRQIIAKEGVKSLFKGAGANILRGVAG 291 Query: 299 AGVISMYDQLQMILFGKKFK 318 AGV+S+YDQL+++LFGK FK Sbjct: 292 AGVLSIYDQLKILLFGKAFK 311 >1OKC-A nrPDB Length = 297 Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 155/293 (52%), Positives = 200/293 (68%), Gaps = 9/293 (3%) Query: 22 NFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQE 81 +FL DFL GGV+AA++KTA +PIERVKLL+Q Q KQ + +++Y GI+DC R ++ Sbjct: 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQ 64 Query: 82 GVISFWRGNTANVIRYFPTQALNFAFKDKIKAMF--GFKKEEGYAKWFAGNLASGGAAGA 139 G +SFWRGN ANVIRYFPTQALNFAFKDK K +F G + + + ++FAGNLASGGAAGA Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124 Query: 140 LSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVG 199 SL FVY LD+ARTRLAAD K R+F GL + K KSDG+ GLY+GF SV G Sbjct: 125 TSLCFVYPLDFARTRLAAD--VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG 182 Query: 200 IVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTGASTCSYPLDTVRRRMMMTS 259 I++YR YFG+YD+ K +L + S+++ VT A SYP DTVRRRMMM S Sbjct: 183 IIIYRAAYFGVYDTAKG-MLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 Query: 260 GQA---VKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYDQLQ 309 G+ + Y G DC RKI EG + FKG +N+LRG+ GA V+ +YD+++ Sbjct: 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIK 294 >2LCK-A nrPDB Length = 303 Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 128/298 (42%), Gaps = 22/298 (7%) Query: 25 IDFLMGGVSAAVAKTAASPIE--RVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEG 82 + FL G +A +A P++ +V+L IQ + + L + +Y G+L EG Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62 Query: 83 VISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAGNLASGGAAGALSL 142 S + G A + R ++ D +K + E L +G GAL++ Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA---GIGSRLLAGSTTGALAV 119 Query: 143 LFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVV 202 D + R A +++ GG R++ ++ YK + +G+ GL++G P+V + Sbjct: 120 AVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176 Query: 203 YRGLYFGMYDSLKPLLL-----TGSLEGSFLASFLLGWVVTTGASTCSYPLDTVRRRMMM 257 YD +K LL T L F ++F G+ T AS P+D V+ R M Sbjct: 177 VNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIAS----PVDVVKTRYMN 232 Query: 258 TS-GQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILR-GVAGAGVISMYDQLQMILF 313 ++ GQ Y A C ++ EG + +KG + LR G + Y+QL+ L Sbjct: 233 SALGQ---YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 >2IO8-A nrPDB Length = 619 Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 222 SLEGSFLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAVKYDGAFD 270 +L+ +F + +LGW++ T + S P + ++ SG ++ G FD Sbjct: 175 TLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFD 223 >6BPM-C nrPDB Length = 727 Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 23/53 (43%) Query: 245 SYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVA 297 S P+ R M + S Q +K GA + + GVG+ F G N G A Sbjct: 32 SRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGAFFAGENGNSTTGDA 84 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4C9G-A nrPDB 478 e-135 4C9J-A nrPDB 451 e-127 6GCI-A nrPDB 432 e-122 1OKC-A nrPDB 385 e-107 2LCK-A nrPDB 329 1e-90 Sequences not found previously or not previously below threshold: 3UJH-A nrPDB 31 0.81 2ZLF-A nrPDB 30 1.1 3B1N-A nrPDB 30 1.3 6HIZ-Ck nrPDB 29 3.9 5HWO-A nrPDB 29 4.1 1EPU-A nrPDB 28 7.3 CONVERGED! >4C9G-A nrPDB Length = 318 Score = 478 bits (1231), Expect = e-135, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MSSNAQVKTPLPPAPAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQ 60 MSSNAQVKTPLPPAPAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQ Sbjct: 1 MSSNAQVKTPLPPAPAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQ 60 Query: 61 GTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKE 120 GTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKE Sbjct: 61 GTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKE 120 Query: 121 EGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKT 180 EGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKT Sbjct: 121 EGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKT 180 Query: 181 LKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTG 240 LKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTG Sbjct: 181 LKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTG 240 Query: 241 ASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAG 300 ASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAG Sbjct: 241 ASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAG 300 Query: 301 VISMYDQLQMILFGKKFK 318 VISMYDQLQMILFGKKFK Sbjct: 301 VISMYDQLQMILFGKKFK 318 >4C9J-A nrPDB Length = 322 Score = 451 bits (1159), Expect = e-127, Method: Composition-based stats. Identities = 274/305 (89%), Positives = 296/305 (97%) Query: 14 APAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDC 73 + A ++E+NF I+FLMGGVSAA+AKTAASPIERVK+LIQNQDEM+KQGTLD+KY+GI+DC Sbjct: 18 SDAKQQETNFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDC 77 Query: 74 FKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAGNLAS 133 FKRTA QEG+ISFWRGNTANVIRYFPTQALNFAFKDKIK MFGFKKEEGY KWFAGNLAS Sbjct: 78 FKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKEEGYGKWFAGNLAS 137 Query: 134 GGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKTLKSDGVAGLYRGF 193 GGAAGALSLLFVYSLD+ARTRLAAD+KSSKKGGARQFNGL DVYKKTLKSDG+AGLYRGF Sbjct: 138 GGAAGALSLLFVYSLDFARTRLAADAKSSKKGGARQFNGLTDVYKKTLKSDGIAGLYRGF 197 Query: 194 LPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTGASTCSYPLDTVRR 253 +PSVVGIVVYRGLYFGM+DSLKPL+LTGSL+GSFLASFLLGWVVTTGASTCSYPLDTVRR Sbjct: 198 MPSVVGIVVYRGLYFGMFDSLKPLVLTGSLDGSFLASFLLGWVVTTGASTCSYPLDTVRR 257 Query: 254 RMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYDQLQMILF 313 RMMMTSGQAVKY+GA DCL+KIVA+EGVGSLFKGCGANILR VAGAGVISMYDQLQMILF Sbjct: 258 RMMMTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILF 317 Query: 314 GKKFK 318 GKKFK Sbjct: 318 GKKFK 322 >6GCI-A nrPDB Length = 315 Score = 432 bits (1111), Expect = e-122, Method: Composition-based stats. Identities = 235/320 (73%), Positives = 272/320 (85%), Gaps = 11/320 (3%) Query: 1 MSSNAQVKT-PLPPAPAPKKESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLK 59 MS+ + K +PP F++DFLMGGVSAAV+KTAA+PIER+KLL+QNQDEM+K Sbjct: 1 MSNKQETKILGMPP---------FVVDFLMGGVSAAVSKTAAAPIERIKLLVQNQDEMIK 51 Query: 60 QGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKK 119 G LDR+Y GI+DCF+RT EG+++ WRGNTANVIRYFPTQALNFAF+DK KAMFG+KK Sbjct: 52 AGRLDRRYNGIIDCFRRTTADEGLMALWRGNTANVIRYFPTQALNFAFRDKFKAMFGYKK 111 Query: 120 E-EGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYK 178 + +GYAKW AGNLASGGAAGA SLLFVYSLDYARTRLA D+KS+K GGARQFNGLIDVY+ Sbjct: 112 DKDGYAKWMAGNLASGGAAGATSLLFVYSLDYARTRLANDAKSAKGGGARQFNGLIDVYR 171 Query: 179 KTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVT 238 KTL SDG+AGLYRGF PSV GIVVYRGLYFGMYDS+KP++L G L +FLASFLLGW VT Sbjct: 172 KTLASDGIAGLYRGFGPSVAGIVVYRGLYFGMYDSIKPVVLVGPLANNFLASFLLGWCVT 231 Query: 239 TGASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAG 298 TGA SYPLDTVRRRMMMTSG+AVKY + D R+I+A EGV SLFKG GANILRGVAG Sbjct: 232 TGAGIASYPLDTVRRRMMMTSGEAVKYKSSIDAFRQIIAKEGVKSLFKGAGANILRGVAG 291 Query: 299 AGVISMYDQLQMILFGKKFK 318 AGV+S+YDQL+++LFGK FK Sbjct: 292 AGVLSIYDQLKILLFGKAFK 311 >1OKC-A nrPDB Length = 297 Score = 385 bits (988), Expect = e-107, Method: Composition-based stats. Identities = 155/299 (51%), Positives = 202/299 (67%), Gaps = 9/299 (3%) Query: 19 KESNFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTA 78 + +FL DFL GGV+AA++KTA +PIERVKLL+Q Q KQ + +++Y GI+DC R Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIP 61 Query: 79 TQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMF--GFKKEEGYAKWFAGNLASGGA 136 ++G +SFWRGN ANVIRYFPTQALNFAFKDK K +F G + + + ++FAGNLASGGA Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 121 Query: 137 AGALSLLFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKTLKSDGVAGLYRGFLPS 196 AGA SL FVY LD+ARTRLAAD K R+F GL + K KSDG+ GLY+GF S Sbjct: 122 AGATSLCFVYPLDFARTRLAAD--VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179 Query: 197 VVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLLGWVVTTGASTCSYPLDTVRRRMM 256 V GI++YR YFG+YD+ K +L + S+++ VT A SYP DTVRRRMM Sbjct: 180 VQGIIIYRAAYFGVYDTAKG-MLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 Query: 257 MTSGQA---VKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYDQLQMIL 312 M SG+ + Y G DC RKI EG + FKG +N+LRG+ GA V+ +YD+++ + Sbjct: 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 222 SLEGSFLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAV-----KYDGAFDCLRKIV 276 SFL FL G V + T P++ V+ + + +Y G DC+ +I Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61 Query: 277 AAEGVGSLFKGCGANILRGV-AGAGVISMYDQLQMILFG 314 +G S ++G AN++R A + D+ + I G Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG 100 >2LCK-A nrPDB Length = 303 Score = 329 bits (843), Expect = 1e-90, Method: Composition-based stats. Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 20/298 (6%) Query: 25 IDFLMGGVSAAVAKTAASPIE--RVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEG 82 + FL G +A +A P++ +V+L IQ + + L + +Y G+L EG Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62 Query: 83 VISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAGNLASGGAAGALSL 142 S + G A + R ++ D +K + E L +G GAL++ Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA---GIGSRLLAGSTTGALAV 119 Query: 143 LFVYSLDYARTRLAADSKSSKKGGARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVV 202 D + R A +++ GG R++ ++ YK + +G+ GL++G P+V + Sbjct: 120 AVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176 Query: 203 YRGLYFGMYDSLKPLLL-----TGSLEGSFLASFLLGWVVTTGASTCSYPLDTVRRRMMM 257 YD +K LL T L F ++F G+ T AS P+D V+ R M Sbjct: 177 VNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIAS----PVDVVKTRYMN 232 Query: 258 TSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILR-GVAGAGVISMYDQLQMILFG 314 ++ +Y A C ++ EG + +KG + LR G + Y+QL+ L Sbjct: 233 SA--LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 Score = 43.9 bits (102), Expect = 9e-05, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Query: 227 FLASFLLGWVVTTGASTCSYPLDTVRRRMMMT--------SGQAVKYDGAFDCLRKIVAA 278 FL A ++PLDT + R+ + + + +Y G + +V Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60 Query: 279 EGVGSLFKGCGANILRGVAGAGV-ISMYDQLQ 309 EG SL+ G A + R ++ A V I +YD ++ Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92 >3UJH-A nrPDB Length = 567 Score = 30.8 bits (68), Expect = 0.81, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 115 FGFKKEE--GYAKWFAGNLASGGAAGALSLLFVYSLDYAR 152 FG + + G+ W G + A G L L Y D A+ Sbjct: 264 FGIQSDRVFGFWDWVGGRYSVTSAVGILPLALQYGYDVAQ 303 >2ZLF-A nrPDB Length = 888 Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 247 PLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYD 306 P D+ R++ Y + + ++ +G F+G A+ G M+D Sbjct: 522 PFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPAS-----QGILQFDMWD 576 Query: 307 Q 307 Q Sbjct: 577 Q 577 >3B1N-A nrPDB Length = 326 Score = 30.1 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 109 DKIKAMFGFKKEEGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKSSKKGGAR 168 D + + E G+ AG LAS GAL + YA TR D++ G R Sbjct: 253 DAFRGGLLYGIEHGFDWATAGRLAS--LMGALKIAHQGPQTYAPTRAEIDARFETAFGYR 310 >6HIZ-Ck nrPDB Length = 874 Score = 28.5 bits (62), Expect = 3.9, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 15/111 (13%) Query: 181 LKSDGVAGLYRGFL-------PSVVGIVVYRGLYFGMYDSLKPLLLTGSLEGSFLASFLL 233 +D + + G + P V G+V LY + + L E L+S L Sbjct: 294 ATTDAIRAAWEGVMREDVVRLPDVTGVV---ALYLTLVCIRESGRLV-PEELKELSSGLE 349 Query: 234 GWVVTTGASTCSYPL----DTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEG 280 V YPL TV+RR ++ + + ++ + + ++ G Sbjct: 350 DGVRPGVRKLQQYPLIFLHPTVKRRFVVKAVAEILHNSSSNAFSNMLRENG 400 >5HWO-A nrPDB Length = 420 Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 4/83 (4%) Query: 89 GNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAGNLAS----GGAAGALSLLF 144 G + P + + M + + AG +A+ AGA + Sbjct: 83 GTETGIDHSKPVASHVQGLLKLPRTMRTYDTQHACYGGTAGLMAAVEWIASGAGAGKVAV 142 Query: 145 VYSLDYARTRLAADSKSSKKGGA 167 V D AR L + ++ GGA Sbjct: 143 VVCSDIARYGLNTAGEPTQGGGA 165 >1EPU-A nrPDB Length = 591 Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%) Query: 43 PIERVKLLIQNQDEMLKQGTLD------RKYAGILDCFKRTATQEGVISFWRGNTANVIR 96 P+ LI +E +K D +Y G F +E + TA I+ Sbjct: 66 PLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIK 125 Query: 97 YFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAGNLASGG 135 + +N AF +F + + ++ + A GG Sbjct: 126 TL--KEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGG 162 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.317 0.132 0.338 Lambda K H 0.267 0.0403 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,764,890 Number of Sequences: 36641 Number of extensions: 400148 Number of successful extensions: 1151 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 1038 Number of HSP's gapped (non-prelim): 35 length of query: 318 length of database: 10,336,785 effective HSP length: 97 effective length of query: 221 effective length of database: 6,782,608 effective search space: 1498956368 effective search space used: 1498956368 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.4 bits)