BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P17890 (251 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6EU0-Q nrPDB 497 e-141 6CNC-Q nrPDB 353 4e-98 5FJA-Q nrPDB 144 3e-35 5FJ9-Q nrPDB 144 3e-35 1AUO-A nrPDB 34 0.062 3KG5-A nrPDB 29 1.5 1QO4-A nrPDB 28 3.1 2Q4J-A nrPDB 28 4.6 5GXU-A nrPDB 27 6.2 3LA8-A nrPDB 27 8.5 5KVU-A nrPDB 27 9.5 >6EU0-Q nrPDB Length = 251 Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust. Identities = 251/251 (100%), Positives = 251/251 (100%) Query: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN Sbjct: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 Query: 61 FGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGI 120 FGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGI Sbjct: 61 FGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGI 120 Query: 121 SIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKE 180 SIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKE Sbjct: 121 SIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKE 180 Query: 181 LAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYG 240 LAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYG Sbjct: 181 LAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYG 240 Query: 241 DEEDPNEEAAF 251 DEEDPNEEAAF Sbjct: 241 DEEDPNEEAAF 251 >6CNC-Q nrPDB Length = 251 Score = 353 bits (906), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 219/238 (92%), Positives = 219/238 (92%) Query: 14 NYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFYTG 73 NYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPF Sbjct: 14 NYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFXXX 73 Query: 74 SMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFP 133 RKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFP Sbjct: 74 XXXXXXXXXXXXXXXXRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFP 133 Query: 134 NELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDG 193 NELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDG Sbjct: 134 NELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDG 193 Query: 194 AAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF 251 AAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF Sbjct: 194 AAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF 251 >5FJA-Q nrPDB Length = 88 Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN Sbjct: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 Query: 61 FGKTVKDGP 69 FGKTVKDGP Sbjct: 61 FGKTVKDGP 69 >5FJ9-Q nrPDB Length = 104 Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN Sbjct: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 Query: 61 FGKTVKDGP 69 FGKTVKDGP Sbjct: 61 FGKTVKDGP 69 >1AUO-A nrPDB Length = 218 Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust. Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Query: 80 DQQENSKSGKRKPNIILD---EDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNEL 136 D+ E S S +R P + L +D + + R + ++LK R + ++ ++P + P E+ Sbjct: 147 DELELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYPMGHEVLPQEI 206 Query: 137 YNVMGINKKKL 147 +++ +L Sbjct: 207 HDIGAWLAARL 217 >3KG5-A nrPDB Length = 134 Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 152 KFNNADDVFTGTGLQDENIGLSMLAKLKE 180 K NN +V+ G G + +G S LA+LK+ Sbjct: 100 KCNNTSEVYQGCGTELRVMGFSTLAQLKQ 128 >1QO4-A nrPDB Length = 306 Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 11/65 (16%) Query: 137 YNVMGINKKKLLAIS-----------KFNNADDVFTGTGLQDENIGLSMLAKLKELAEDV 185 ++ +G+N L+A+S FNN F+GTG D + ++L+ L++L Sbjct: 153 FSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQN 212 Query: 186 DDAST 190 AST Sbjct: 213 GSAST 217 >2Q4J-A nrPDB Length = 469 Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 10/71 (14%) Query: 65 VKDGPFYTGSMSLIIDQQEN--SKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISI 122 V+DG + + LI+ Q EN +K G + P ++++ +T+D + +KY ++ Sbjct: 104 VRDGLTF---LDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS-----NV 155 Query: 123 DDHPYNLNLFP 133 D H +N + +P Sbjct: 156 DIHTFNQSKYP 166 >5GXU-A nrPDB Length = 640 Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 180 ELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDF 213 ++A+ VDD GA + + G G+DD +DDF Sbjct: 143 KVAKVVDDILVEQGAQRLVQVGLGDDDQCIEDDF 176 >3LA8-A nrPDB Length = 303 Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 140 MGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDA 188 MG LL K D T G+Q GL + + L ELAE++++A Sbjct: 30 MGRGSMSLL--KKIYETRDFLTAKGVQKPEFGLILGSGLGELAEEIENA 76 >5KVU-A nrPDB Length = 745 Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 9/50 (18%) Query: 65 VKDGPFYTGSMSLIIDQQEN------SKSGKR---KPNIILDEDDTNDGI 105 ++ G FY G S+ +D+ N +KSGK KP + LD+ D D + Sbjct: 178 MRHGDFYAGEKSMTLDRARNVRMELLAKSGKTIVLKPEVPLDDGDVIDSM 227 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6EU0-Q nrPDB 469 e-133 6CNC-Q nrPDB 362 e-101 5FJA-Q nrPDB 157 3e-39 5FJ9-Q nrPDB 157 3e-39 Sequences not found previously or not previously below threshold: 6FAI-l nrPDB 33 0.091 4GWP-B nrPDB 33 0.11 1AUO-A nrPDB 32 0.39 5KVU-A nrPDB 31 0.41 1QO4-A nrPDB 31 0.61 2Q4J-A nrPDB 30 0.71 6FGZ-A nrPDB 30 0.90 1AM5-A nrPDB 30 1.3 1JMJ-A nrPDB 29 1.7 5GXU-A nrPDB 29 1.9 3LA8-A nrPDB 29 2.0 4WSN-B nrPDB 29 2.3 3RJ1-B nrPDB 29 2.3 1IOK-A nrPDB 29 2.4 6G18-t nrPDB 28 5.2 5C9S-B nrPDB 27 6.4 6DX0-A nrPDB 27 8.1 CONVERGED! >6EU0-Q nrPDB Length = 251 Score = 469 bits (1208), Expect = e-133, Method: Composition-based stats. Identities = 251/251 (100%), Positives = 251/251 (100%) Query: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN Sbjct: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 Query: 61 FGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGI 120 FGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGI Sbjct: 61 FGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGI 120 Query: 121 SIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKE 180 SIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKE Sbjct: 121 SIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKE 180 Query: 181 LAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYG 240 LAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYG Sbjct: 181 LAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYG 240 Query: 241 DEEDPNEEAAF 251 DEEDPNEEAAF Sbjct: 241 DEEDPNEEAAF 251 >6CNC-Q nrPDB Length = 251 Score = 362 bits (929), Expect = e-101, Method: Composition-based stats. Identities = 219/238 (92%), Positives = 219/238 (92%) Query: 14 NYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFYTG 73 NYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPF Sbjct: 14 NYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFXXX 73 Query: 74 SMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFP 133 RKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFP Sbjct: 74 XXXXXXXXXXXXXXXXRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFP 133 Query: 134 NELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDG 193 NELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDG Sbjct: 134 NELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDG 193 Query: 194 AAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF 251 AAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF Sbjct: 194 AAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF 251 >5FJA-Q nrPDB Length = 88 Score = 157 bits (398), Expect = 3e-39, Method: Composition-based stats. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN Sbjct: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 Query: 61 FGKTVKDGP 69 FGKTVKDGP Sbjct: 61 FGKTVKDGP 69 >5FJ9-Q nrPDB Length = 104 Score = 157 bits (398), Expect = 3e-39, Method: Composition-based stats. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN Sbjct: 1 MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYIN 60 Query: 61 FGKTVKDGP 69 FGKTVKDGP Sbjct: 61 FGKTVKDGP 69 >6FAI-l nrPDB Length = 425 Score = 33.5 bits (75), Expect = 0.091, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%) Query: 205 DDDLADDDFEEDEDE----EDDDDYNAEKYFNNGDDDDYGDEEDPNE 247 DDD+++D+ EE+ E E+D+ Y++E + +DD +E+ NE Sbjct: 355 DDDMSNDEAEEENGEGDYSEEDEYYDSELDNESSEDDSEDAQEEENE 401 Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 150 ISKFNNADDVFTGTGLQDENIG----LSMLAKLKELAEDVDDASTGDGAAKGSKTGEG-- 203 + + +N D++ +G ++ G + + ++ + DD + D A + + GEG Sbjct: 315 VKRTDNLDELVQASGFSKKHPGDRGLETAVESMRNAVYNSDDDMSNDEAEE--ENGEGDY 372 Query: 204 -EDDDLADDDFEEDEDEEDDDDYNAEK 229 E+D+ D + + + E+D +D E+ Sbjct: 373 SEEDEYYDSELDNESSEDDSEDAQEEE 399 >4GWP-B nrPDB Length = 687 Score = 33.1 bits (74), Expect = 0.11, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 25/165 (15%) Query: 80 DQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNV 139 D+ +GK +I L+ D+ + ++ +DK LK K S+ +P+ E+Y Sbjct: 44 DEPVPESAGKADTSIRLEGDELENKTKKDNDKNLKFLKNKDSLVSNPH-------EIYGS 96 Query: 140 MGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLA-KLKELAEDVDDASTG-----DG 193 M + + + + + G G + ++ L ++K+L D D DG Sbjct: 97 MPLEQLIPIILRQ--------RGPGFKFVDLNEKELQNEIKQLGSDSSDGHNSEKKDTDG 148 Query: 194 AAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDD 238 A + + GE D + D+E+ ++ D + K NG+ DD Sbjct: 149 ADENVQIGE----DFMEVDYEDKDNPVDSRNETDHKTNENGETDD 189 >1AUO-A nrPDB Length = 218 Score = 31.6 bits (70), Expect = 0.39, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 80 DQQENSKSGKRKPNIILD---EDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNEL 136 D+ E S S +R P + L +D + + R + ++LK R + ++ ++P + P E+ Sbjct: 147 DELELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYPMGHEVLPQEI 206 Query: 137 YNV 139 +++ Sbjct: 207 HDI 209 >5KVU-A nrPDB Length = 745 Score = 31.2 bits (69), Expect = 0.41, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 9/50 (18%) Query: 65 VKDGPFYTGSMSLIIDQQEN------SKSGKR---KPNIILDEDDTNDGI 105 ++ G FY G S+ +D+ N +KSGK KP + LD+ D D + Sbjct: 178 MRHGDFYAGEKSMTLDRARNVRMELLAKSGKTIVLKPEVPLDDGDVIDSM 227 >1QO4-A nrPDB Length = 306 Score = 30.8 bits (68), Expect = 0.61, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 11/65 (16%) Query: 137 YNVMGINKKKLLAISK-----------FNNADDVFTGTGLQDENIGLSMLAKLKELAEDV 185 ++ +G+N L+A+S FNN F+GTG D + ++L+ L++L Sbjct: 153 FSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQN 212 Query: 186 DDAST 190 AST Sbjct: 213 GSAST 217 >2Q4J-A nrPDB Length = 469 Score = 30.4 bits (67), Expect = 0.71, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 10/71 (14%) Query: 65 VKDGPFYTGSMSLIIDQQEN--SKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISI 122 V+DG + + LI+ Q EN +K G + P ++++ +T+D + +KY ++ Sbjct: 104 VRDGLTF---LDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS-----NV 155 Query: 123 DDHPYNLNLFP 133 D H +N + +P Sbjct: 156 DIHTFNQSKYP 166 >6FGZ-A nrPDB Length = 774 Score = 30.0 bits (66), Expect = 0.90, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Query: 151 SKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLAD 210 +K N+ D + ++ N + + + + +D + D K K+ D A+ Sbjct: 553 AKAANSTDNAANSAPKESNANDNRILQPRRRNQDENAKKNDDARRKDDKSPNKTDASNAE 612 Query: 211 DDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNE 247 D D + D + +FN D+ DEED NE Sbjct: 613 KDARSDRNPRGDP--TMDNFFNEADE----DEEDGNE 643 >1AM5-A nrPDB Length = 324 Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 58 YINFGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDG 104 Y+ GKTV D + TG M I+ Q S G PN L E T G Sbjct: 64 YVETGKTV-DLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPG 109 >1JMJ-A nrPDB Length = 480 Score = 29.2 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Query: 217 EDEEDDDDYNAEKYFNNGDDDDYGDEED 244 E EEDDD + EK F+ +DDDY D D Sbjct: 53 EGEEDDDYLDLEKIFS--EDDDYIDIVD 78 >5GXU-A nrPDB Length = 640 Score = 29.2 bits (64), Expect = 1.9, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 178 LKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDF 213 ++A+ VDD GA + + G G+DD +DDF Sbjct: 141 FNKVAKVVDDILVEQGAQRLVQVGLGDDDQCIEDDF 176 >3LA8-A nrPDB Length = 303 Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 140 MGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDA 188 MG LL K D T G+Q GL + + L ELAE++++A Sbjct: 30 MGRGSMSLL--KKIYETRDFLTAKGVQKPEFGLILGSGLGELAEEIENA 76 >4WSN-B nrPDB Length = 447 Score = 28.9 bits (63), Expect = 2.3, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 9/44 (20%) Query: 197 GSKTGEGEDDDLADDDFEEDEDEEDDDDYNAE-------KYFNN 233 G + + EDD + DD EED D E +D N+E +Y+N+ Sbjct: 2 GGRMSDMEDDFMCDD--EEDYDLEYSEDSNSEPNVDLENQYYNS 43 >3RJ1-B nrPDB Length = 583 Score = 28.9 bits (63), Expect = 2.3, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%) Query: 177 KLKELAEDVDDASTG-----DGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYF 231 ++K+L D D DGA + + GE D + D+E+ ++ D + K Sbjct: 30 EIKQLGSDSSDGHNSEKKDTDGADENVQIGE----DFMEVDYEDKDNPVDSRNETDHKTN 85 Query: 232 NNGDDDD 238 NG+ DD Sbjct: 86 ENGETDD 92 >1IOK-A nrPDB Length = 545 Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%) Query: 164 GLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDD 223 G++ EN+ + ML + K+++ + D+ + DGA + ++ E + + EE Sbjct: 306 GMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEI-EARVSQI------RQQIEETTS 358 Query: 224 DYNAEK 229 DY+ EK Sbjct: 359 DYDREK 364 >6G18-t nrPDB Length = 475 Score = 27.7 bits (60), Expect = 5.2, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Query: 200 TGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYG--DEED 244 TGE E D+ + E+D + ED DD EK +N D D G +ED Sbjct: 171 TGEEEGMDIQKSENEDDSEWEDVDD---EKGDSNDDYDSAGLLSDED 214 >5C9S-B nrPDB Length = 572 Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 9/70 (12%) Query: 163 TGLQDENIGLSM----LAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDED 218 T + + I LS+ +K ELA +T D K E ED+ +AD F + + Sbjct: 167 TNPEKKQISLSLKASHFSKEAELASTTTTTTTVDQLEK-----EDEDEVMADAGFNDSDS 221 Query: 219 EEDDDDYNAE 228 E D D N E Sbjct: 222 ESDIGDQNTE 231 >6DX0-A nrPDB Length = 517 Score = 26.9 bits (58), Expect = 8.1, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 72 TGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYN--- 128 T S + D +E R+ +++D + I+ ++D Y+K+ +G+++ H N Sbjct: 71 TLSRKVTSDAKEKKALISREIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELR 130 Query: 129 -----LNLFPNELYNVMGINKKKLLAISKFNNAD 157 L E I KK S+FN D Sbjct: 131 DLILGLKSLDFERSTAENIYKKLKAIFSQFNVED 164 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.135 0.385 Lambda K H 0.267 0.0418 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,463,615 Number of Sequences: 36641 Number of extensions: 626516 Number of successful extensions: 3493 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 79 Number of HSP's that attempted gapping in prelim test: 1633 Number of HSP's gapped (non-prelim): 980 length of query: 251 length of database: 10,336,785 effective HSP length: 95 effective length of query: 156 effective length of database: 6,855,890 effective search space: 1069518840 effective search space used: 1069518840 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 58 (26.9 bits)