BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P17707
         (334 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1JL0-A nrPDB                                                          694   0.0  
3H0W-A nrPDB                                                          559   e-160
3DZ4-B nrPDB                                                          142   2e-34
1MHM-A nrPDB                                                          134   5e-32
5TVO-A nrPDB                                                          105   2e-23
1MHM-B nrPDB                                                           40   0.001
1M9N-A nrPDB                                                           32   0.42 
5YFP-F nrPDB                                                           30   1.6  
2JJ7-A nrPDB                                                           29   3.2  
2WV1-A nrPDB                                                           28   4.3  
2FX0-A nrPDB                                                           28   4.9  

>1JL0-A nrPDB
          Length = 334

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/334 (99%), Positives = 332/334 (99%)

Query: 1   MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60
           MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
Sbjct: 1   MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60

Query: 61  EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP 120
           EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
Sbjct: 61  EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP 120

Query: 121 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL 180
           SHQGYPHRNFQEEIEFLNAIFPNGA YCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
Sbjct: 121 SHQGYPHRNFQEEIEFLNAIFPNGAGYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL 180

Query: 181 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW 240
           MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
Sbjct: 181 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW 240

Query: 241 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ 300
           TI ITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
Sbjct: 241 TIAITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ 300

Query: 301 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS 334
           KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
Sbjct: 301 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS 334


>3H0W-A nrPDB
          Length = 266

 Score =  559 bits (1440), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 69  SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 128
           SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60

Query: 129 NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAV 188
           NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAV
Sbjct: 61  NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAV 120

Query: 189 MDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEP 248
           MDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEP
Sbjct: 121 MDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEP 180

Query: 249 EFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRL 308
           EFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRL
Sbjct: 181 EFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRL 240

Query: 309 DCQSAMFNDYNFVFTSFAKKQQQQQS 334
           DCQSAMFNDYNFVFTSFAKKQQQQQS
Sbjct: 241 DCQSAMFNDYNFVFTSFAKKQQQQQS 266


>3DZ4-B nrPDB
          Length = 67

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60
          MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
Sbjct: 1  MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60

Query: 61 EAYVLSE 67
          EAYVLSE
Sbjct: 61 EAYVLSE 67


>1MHM-A nrPDB
          Length = 288

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 124/231 (53%), Gaps = 12/231 (5%)

Query: 69  SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 128
           S+FV   + I+KTCGTT LL A+ P+L+LA   S    +Q   Y+R +F+ P  Q +PHR
Sbjct: 2   SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLS--LKVQDVRYTRGSFIFPGAQSFPHR 59

Query: 129 NFQEEIEFLNAIFPNGAA----YCMGRMN-SDCWYLYTLDFPESRVISQPDQTLEILMSE 183
           +F EE+  L+  F   AA      MG  + +  W++Y+     S   + P  TLE+ M+ 
Sbjct: 60  HFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSAS-AGSVQSNDPVYTLEMCMTG 118

Query: 184 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 243
           LD      FY  +  +A  +T  SGIR ++P S I    F PCGYSMN ++      TIH
Sbjct: 119 LDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVS-TIH 177

Query: 244 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSK 291
           ITPE  F+Y SFE+   N        L+ +V+  F+P +F   L  + ++K
Sbjct: 178 ITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATK 228


>5TVO-A nrPDB
          Length = 284

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 17/231 (7%)

Query: 69  SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 128
           S+FV K R IL TCGT  LL  +  + +      G     SF +  KN+  P  Q  PH 
Sbjct: 1   SLFVMKDRVILITCGTITLLNCVPLICEAVSTVCGEVEWVSFMH--KNYSFPWEQKGPHL 58

Query: 129 NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQP----DQTLEILMSEL 184
           +  EE + L + FP+G  +  G ++SD ++LY      S V+ QP    D  L + M  L
Sbjct: 59  SMAEEFKTLRSHFPSGQPFIFGPIDSDHYFLYF----HSDVV-QPSCSDDAQLSMTMYGL 113

Query: 185 DPAVMDQFY----MKDGVTAKDVTRESGIRDLIPGS-VIDATMFNPCGYSMNGMKSDGTY 239
           D      +Y    +  G     +   +G+ +++  S ++    + PCGYS+N ++    Y
Sbjct: 114 DRNQTKHWYSDKMLPTGPETAVIREATGLSEVVDDSWILHDLQYEPCGYSINAIRGS-EY 172

Query: 240 WTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSS 290
            TIHITPE   S+ S+ETN    +Y   I  V+ VF P +F   +F++  S
Sbjct: 173 QTIHITPEEHCSFASYETNTCALNYSKCICGVLRVFDPERFSVIVFIDPDS 223


>1MHM-B nrPDB
          Length = 72

 Score = 40.0 bits (92), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 7  FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
          FEG EK LE+ F      A+     LR++ +++ D +L   +C+I+     D  ++YVLS
Sbjct: 12 FEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLS 71

Query: 67 E 67
          E
Sbjct: 72 E 72


>1M9N-A nrPDB
          Length = 613

 Score = 32.0 bits (71), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 22/165 (13%)

Query: 80  KTCGTTLLLKALVPLLKLARDYSGFDSIQSF-----------FYSRKNFMKPSHQGYPHR 128
           + C    L K L PL        G D + SF             + K   +    G    
Sbjct: 306 QVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAP 365

Query: 129 NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAV 188
            ++EE   + +   NG  YC+ +M+ +    Y  D  E R +         LM + + AV
Sbjct: 366 GYEEEALKILSKKKNGG-YCVLQMDPN----YEPDDNEIRTLYGLQ-----LMQKRNNAV 415

Query: 189 MDQFYMKDGVTAKDVTRESGIRDLIPGSV-IDATMFNPCGYSMNG 232
           +D+   K+ VT      ES +RDLI  S+ +  T  N   Y+ +G
Sbjct: 416 IDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDG 460


>5YFP-F nrPDB
          Length = 910

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 64  VLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKN---FMKP 120
           ++ +  M+V+ ++  LK    T+L+  +V +L+L+       + + FF   +N     K 
Sbjct: 145 LIVKKQMYVNNKKISLKISEATILITKVVRILELSSKCQELITERKFFKVLQNLDSLEKL 204

Query: 121 SHQGYPHRNFQEEIEFLNAI 140
             Q + + NFQ  IE  N+I
Sbjct: 205 YLQEFKNYNFQFLIEIYNSI 224


>2JJ7-A nrPDB
          Length = 186

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 202 DVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQ 261
           +V ++ G+ + +P + ++   FNP    +N ++   T +T HI   PE   +++E  + +
Sbjct: 57  EVFKKYGLANELP-NFLEKNQFNP----INALREYLTVFTTHIKENPEIGTLAYEEIIKE 111

Query: 262 TSYDDLIR 269
           ++  + I+
Sbjct: 112 SARLEKIK 119


>2WV1-A nrPDB
          Length = 202

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 202 DVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQ 261
           +V ++ G+ + +P + ++   FNP    +N ++   T +T HI   PE   +++E  + +
Sbjct: 59  EVFKKYGLANELP-NFLEKNQFNP----INALREYLTVFTTHIKENPEIGTLAYEEIIKE 113

Query: 262 TSYDDLIR 269
           ++  + I+
Sbjct: 114 SARLEKIK 121


>2FX0-A nrPDB
          Length = 201

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 202 DVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQ 261
           +V ++ G+ + +P + ++   FNP    +N ++   T +T HI   PE   +++E  + +
Sbjct: 57  EVFKKYGLANELP-NFLEKNQFNP----INALREYLTVFTTHIKENPEIGTLAYEEIIKE 111

Query: 262 TSYDDLIR 269
           ++  + I+
Sbjct: 112 SARLEKIK 119


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

1JL0-A nrPDB                                                          590   e-169
3H0W-A nrPDB                                                          468   e-132
5TVO-A nrPDB                                                          320   6e-88
1MHM-A nrPDB                                                          310   4e-85
3DZ4-B nrPDB                                                          127   6e-30
1MHM-B nrPDB                                                          106   2e-23

Sequences not found previously or not previously below threshold:

5TVM-E nrPDB                                                           87   7e-18
1XKZ-A nrPDB                                                           36   0.022
5X5O-A nrPDB                                                           31   0.82 
2G5W-A nrPDB                                                           31   0.87 
5TVM-A nrPDB                                                           30   1.1  
2GV8-A nrPDB                                                           30   1.7  
3R9C-A nrPDB                                                           29   2.9  

>1JL0-A nrPDB
          Length = 334

 Score =  590 bits (1521), Expect = e-169,   Method: Composition-based stats.
 Identities = 332/334 (99%), Positives = 332/334 (99%)

Query: 1   MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60
           MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
Sbjct: 1   MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60

Query: 61  EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP 120
           EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
Sbjct: 61  EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP 120

Query: 121 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL 180
           SHQGYPHRNFQEEIEFLNAIFPNGA YCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
Sbjct: 121 SHQGYPHRNFQEEIEFLNAIFPNGAGYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL 180

Query: 181 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW 240
           MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
Sbjct: 181 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW 240

Query: 241 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ 300
           TI ITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
Sbjct: 241 TIAITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ 300

Query: 301 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS 334
           KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
Sbjct: 301 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS 334


>3H0W-A nrPDB
          Length = 266

 Score =  468 bits (1205), Expect = e-132,   Method: Composition-based stats.
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 69  SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 128
           SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60

Query: 129 NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAV 188
           NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAV
Sbjct: 61  NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAV 120

Query: 189 MDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEP 248
           MDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEP
Sbjct: 121 MDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEP 180

Query: 249 EFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRL 308
           EFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRL
Sbjct: 181 EFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRL 240

Query: 309 DCQSAMFNDYNFVFTSFAKKQQQQQS 334
           DCQSAMFNDYNFVFTSFAKKQQQQQS
Sbjct: 241 DCQSAMFNDYNFVFTSFAKKQQQQQS 266


>5TVO-A nrPDB
          Length = 284

 Score =  320 bits (819), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 17/231 (7%)

Query: 69  SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 128
           S+FV K R IL TCGT  LL  +  + +      G     SF +  KN+  P  Q  PH 
Sbjct: 1   SLFVMKDRVILITCGTITLLNCVPLICEAVSTVCGEVEWVSFMH--KNYSFPWEQKGPHL 58

Query: 129 NFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQP----DQTLEILMSEL 184
           +  EE + L + FP+G  +  G ++SD ++LY      S V+ QP    D  L + M  L
Sbjct: 59  SMAEEFKTLRSHFPSGQPFIFGPIDSDHYFLYF----HSDVV-QPSCSDDAQLSMTMYGL 113

Query: 185 DPAVMDQFY----MKDGVTAKDVTRESGIRDLIPGS-VIDATMFNPCGYSMNGMKSDGTY 239
           D      +Y    +  G     +   +G+ +++  S ++    + PCGYS+N ++    Y
Sbjct: 114 DRNQTKHWYSDKMLPTGPETAVIREATGLSEVVDDSWILHDLQYEPCGYSINAIRGS-EY 172

Query: 240 WTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSS 290
            TIHITPE   S+ S+ETN    +Y   I  V+ VF P +F   +F++  S
Sbjct: 173 QTIHITPEEHCSFASYETNTCALNYSKCICGVLRVFDPERFSVIVFIDPDS 223


>1MHM-A nrPDB
          Length = 288

 Score =  310 bits (795), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 85/231 (36%), Positives = 124/231 (53%), Gaps = 12/231 (5%)

Query: 69  SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 128
           S+FV   + I+KTCGTT LL A+ P+L+LA   S    +Q   Y+R +F+ P  Q +PHR
Sbjct: 2   SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLS--LKVQDVRYTRGSFIFPGAQSFPHR 59

Query: 129 NFQEEIEFLNAIFPNGAA----YCMGRMN-SDCWYLYTLDFPESRVISQPDQTLEILMSE 183
           +F EE+  L+  F   AA      MG  + +  W++Y+     S   + P  TLE+ M+ 
Sbjct: 60  HFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSAS-AGSVQSNDPVYTLEMCMTG 118

Query: 184 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 243
           LD      FY  +  +A  +T  SGIR ++P S I    F PCGYSMN ++      TIH
Sbjct: 119 LDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVS-TIH 177

Query: 244 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSK 291
           ITPE  F+Y SFE+   N        L+ +V+  F+P +F   L  + ++K
Sbjct: 178 ITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATK 228


>3DZ4-B nrPDB
          Length = 67

 Score =  127 bits (320), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60
          MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
Sbjct: 1  MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60

Query: 61 EAYVLSE 67
          EAYVLSE
Sbjct: 61 EAYVLSE 67


>1MHM-B nrPDB
          Length = 72

 Score =  106 bits (264), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 7  FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
          FEG EK LE+ F      A+     LR++ +++ D +L   +C+I+     D  ++YVLS
Sbjct: 12 FEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLS 71

Query: 67 E 67
          E
Sbjct: 72 E 72


>5TVM-E nrPDB
          Length = 325

 Score = 87.5 bits (215), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 113/303 (37%), Gaps = 44/303 (14%)

Query: 9   GTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSES 68
           G EK  E+ F++          D+ T+   +   +++    S+   +            S
Sbjct: 36  GLEKRFELNFAQPV--------DIGTVTVKQLASVMERAGESLRQNSAELGIHTLKFDRS 87

Query: 69  SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 128
            +  + ++ ++++  + +L +A+ P+L+L R ++      SF   R N+  P        
Sbjct: 88  LLVFTAKQIVVRSSVSVMLHEAVHPMLELMRSHNIIVDWASFM--RVNYGSPWDMTSETS 145

Query: 129 N-FQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVIS---QPDQTLEILMSEL 184
           +    E   L + FP G  Y  G ++ D  + +  D  +    S   + D  + + M  +
Sbjct: 146 DIMAHEYAELKSAFPTGHPYLAGPVDRDHCFYFVYDGIDRDPSSCRRENDVQINVYMYNV 205

Query: 185 DPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHI 244
                D  Y  DG T +     S            A  +     S        TY + H 
Sbjct: 206 ---QADDEYDLDGNTKEQQLLVSH----------CAGEYETLRVS--------TYGSTH- 243

Query: 245 TPEPEFSYVSFETN--LSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKI 302
                  + SFETN   + +    ++  +++ F P + +  L  ++ ++  T      ++
Sbjct: 244 ------PFASFETNAVSAASDITKIVNGLLKKFYPERVLLVLLQDRDAQGTTACGVMDRL 297

Query: 303 EGF 305
           EGF
Sbjct: 298 EGF 300


>1XKZ-A nrPDB
          Length = 255

 Score = 36.2 bits (82), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 116 NFMKPSHQGYPHRNFQEEIEFLNAIFPNGAA-YCMGRMNSDCWYLYTLDFPESRVISQPD 174
           N+ KP H  Y   +  +       IF + +  + M  M  D +Y+Y       R      
Sbjct: 8   NYKKPLHNDYQILDKSK-------IFGSNSGSFVMYSMKKDKYYIYNEKESRKRYSPNST 60

Query: 175 QTLEILMSELDPAVMD 190
             + + M  LD  +++
Sbjct: 61  YKIYLAMFGLDRHIIN 76


>5X5O-A nrPDB
          Length = 310

 Score = 30.8 bits (68), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 12/103 (11%)

Query: 14  LEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVS 73
           +++ F   Q   N G G   ++ R++W  + +D + ++  + K +K EA +LS     V 
Sbjct: 10  VQIKFDDLQFFENCGGGSFGSVYRAKW--ISQDKEVAVKKLLKIEK-EAEILS-----VL 61

Query: 74  KRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKN 116
             R I++  G  L      P   +  +Y+   S+  +  S ++
Sbjct: 62  SHRNIIQFYGVIL----EPPNYGIVTEYASLGSLYDYINSNRS 100


>2G5W-A nrPDB
          Length = 391

 Score = 30.8 bits (68), Expect = 0.87,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 25/182 (13%)

Query: 71  FVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPH--- 127
           F    R +L        L  +     LA  Y+   +   F  S    + P   G+PH   
Sbjct: 21  FDLSHRVVLAPMTRCRALNGVPN-AALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPG 79

Query: 128 RNFQEEIE----FLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSE 183
               E++E     + A+   G  +         W++          + QP+    I  + 
Sbjct: 80  IYSDEQVEAWKQVVEAVHAKG-GFIF----CQLWHVGRASHA----VYQPNGGSPISSTN 130

Query: 184 LDPAVMDQF--YMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWT 241
             P   +++   + DG   K     +     +  S I   + + C  ++N +++      
Sbjct: 131 -KPISENRWRVLLPDGSHVKYPKPRA-----LEASEIPRVVEDYCLSALNAIRAGFDGIE 184

Query: 242 IH 243
           IH
Sbjct: 185 IH 186


>5TVM-A nrPDB
          Length = 85

 Score = 30.5 bits (67), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 7  FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
          FEG EK LEV    +  D    SG L       W  ++  +   I+S    +   +YVLS
Sbjct: 28 FEGPEKRLEV--IMRVVDGTHVSG-LLAHDDDVWQKVIDAICAHIVSREFNEYIRSYVLS 84

Query: 67 E 67
          E
Sbjct: 85 E 85


>2GV8-A nrPDB
          Length = 447

 Score = 29.7 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 24/162 (14%)

Query: 97  LARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAI----FPNGAAYCMGRM 152
           L RD      I+   Y  ++F KP    +PHR+  +E + + A     F   A   +   
Sbjct: 84  LYRDLQTNTPIELMGYCDQSF-KPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIE 142

Query: 153 NSD-CWYL-YTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIR 210
             D  W + Y      S +       + I            + +      K +   +   
Sbjct: 143 KKDGSWVVTYKGTKAGSPISKDIFDAVSIC--------NGHYEVPYIPNIKGLDEYA--- 191

Query: 211 DLIPGSVIDATMF-NP---CGYSMNGMKSDGTYWTI--HITP 246
             +PGSV+ +++F  P    G S+  +    +   +  H+TP
Sbjct: 192 KAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTP 233


>3R9C-A nrPDB
          Length = 418

 Score = 28.9 bits (63), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 120 PSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRM-----NSDCWYLYTLDFPESRVISQPD 174
           P+  G P R   +  +  +  F  GA +C+G        +         FPE+R+  +P+
Sbjct: 338 PTIVGAPDRFDPDRAQIRHLGFGKGAHFCLGAPLARLEATVALPALAARFPEARLSGEPE 397

Query: 175 QTLEILMSEL 184
               + +  +
Sbjct: 398 YKRNLTLRGM 407


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.130    0.352 

Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,798,037
Number of Sequences: 36641
Number of extensions: 430037
Number of successful extensions: 983
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 25
length of query: 334
length of database: 10,336,785
effective HSP length: 98
effective length of query: 236
effective length of database: 6,745,967
effective search space: 1592048212
effective search space used: 1592048212
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 59 (27.4 bits)