BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P16455 (207 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1EH7-A nrPDB 419 e-118 1QNT-A nrPDB 361 e-100 3L00-A nrPDB 319 5e-88 4BHB-A nrPDB 87 6e-18 1SFE-A nrPDB 76 1e-14 1MGT-A nrPDB 70 6e-13 2G7H-A nrPDB 64 3e-11 4ZYE-A nrPDB 63 7e-11 1WRJ-A nrPDB 58 3e-09 4HDU-A nrPDB 41 3e-04 2KIM-A nrPDB 34 0.044 1ASZ-A nrPDB 29 1.3 5TGT-A nrPDB 28 3.0 6DHT-A nrPDB 27 8.8 3H3K-A nrPDB 27 9.0 4O7O-A nrPDB 27 9.1 >1EH7-A nrPDB Length = 207 Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM 60 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM Sbjct: 1 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM 60 Query: 61 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL 120 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL Sbjct: 61 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL 120 Query: 121 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPG 180 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPG Sbjct: 121 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPG 180 Query: 181 LGGSSGLAGAWLKGAGATSGSPPAGRN 207 LGGSSGLAGAWLKGAGATSGSPPAGRN Sbjct: 181 LGGSSGLAGAWLKGAGATSGSPPAGRN 207 >1QNT-A nrPDB Length = 176 Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/176 (100%), Positives = 176/176 (100%) Query: 1 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM 60 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM Sbjct: 1 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM 60 Query: 61 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL 120 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL Sbjct: 61 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL 120 Query: 121 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRL 176 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRL Sbjct: 121 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRL 176 >3L00-A nrPDB Length = 182 Score = 319 bits (817), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 158/177 (89%), Positives = 159/177 (89%) Query: 2 DKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQ 61 DKDCEMKRTTLDSPLGKLELSGCEQGLHEI LGKGTSAADAVEVPAPAAVLGGPEPLMQ Sbjct: 5 DKDCEMKRTTLDSPLGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQ 64 Query: 62 CTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALA 121 TAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISY LAALA Sbjct: 65 ATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALA 124 Query: 122 GNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGK 178 GNP A AV A+ GNPVPILIPCHRVV VG Y GGLAVKEWLLAHEGHRLGK Sbjct: 125 GNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGK 181 >4BHB-A nrPDB Length = 165 Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 83/166 (50%), Gaps = 16/166 (9%) Query: 11 TLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYF 70 T+DSP+G L L+G L +++L + + P P A G + L NAYF Sbjct: 6 TIDSPIGPLTLAGHGSVLTNLRMLEQTYEPSRTHWTPDPGAFSGAVDQL-------NAYF 58 Query: 71 HQPEAIEEFPVP-ALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARA 129 + EF V L FQQ +WK L + +GE SY ++A G P AARA Sbjct: 59 --AGELTEFDVELDLRGTDFQQR------VWKALLTIPYGETRSYGEIADQIGAPGAARA 110 Query: 130 VGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHR 175 VG A NP+ I++PCHRV+ +SG + Y GG+ K LL E R Sbjct: 111 VGLANGHNPIAIIVPCHRVIGASGKLTGYGGGINRKRALLELEKSR 156 >1SFE-A nrPDB Length = 180 Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 13 DSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM--QCTAWLNAYF 70 D LG+ ++ E+G+ I L + ++ PAA P LM Q + A Sbjct: 21 DCELGRCLVAESERGICAILLGDDDATLISELQQMFPAAD-NAPADLMFQQHVREVIASL 79 Query: 71 HQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAV 130 +Q + P+ + FQQ+ +W+ L+ + GE +SYQQLA G PKA RAV Sbjct: 80 NQRDTPLTLPLD-IRGTAFQQQ------VWQALRTIPCGETVSYQQLANAIGKPKAVRAV 132 Query: 131 GGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGH 174 A N + I+IPCHRVV G++ Y G++ K LL E Sbjct: 133 ASACAANKLAIVIPCHRVVRGDGSLSGYRWGVSRKAQLLRREAE 176 >1MGT-A nrPDB Length = 174 Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 63/109 (57%), Gaps = 12/109 (11%) Query: 73 PEAIEEFPVPALHHPVFQQE-------SFTRQVLWKLLKVVKFGEVISYQQLA-ALAGNP 124 PE + + + L + F +E F ++V L K VK G VI+Y LA AL +P Sbjct: 64 PEKVFKVLIGELDNASFLRELSFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSP 123 Query: 125 KAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEG 173 RAVGGAM+ NP PI++PCHRVV G +G YS G+ K++LL EG Sbjct: 124 ---RAVGGAMKRNPYPIVVPCHRVVAHDG-IGYYSSGIEEKKFLLEIEG 168 >2G7H-A nrPDB Length = 167 Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 11/124 (8%) Query: 52 VLGGPEP--LMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFG 109 V+ PE L L YF + I++ V L + FT++VL ++K ++FG Sbjct: 39 VVSNPEDEHLKVAEIILKLYFAE---IDDKKVRELISYKLEVPEFTKKVL-DIVKDIEFG 94 Query: 110 EVISYQQLAA-LAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWL 168 + ++Y +A L +P RAVG A++ NP+P++IPCHRVV + ++G YS GL K+++ Sbjct: 95 KTLTYGDIAKKLNTSP---RAVGMALKRNPLPLIIPCHRVV-AKNSLGGYSYGLDKKKFI 150 Query: 169 LAHE 172 L E Sbjct: 151 LERE 154 >4ZYE-A nrPDB Length = 164 Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 3/111 (2%) Query: 66 LNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPK 125 +FH+ + E L P+ + R ++K + + +G+V++Y+Q+A G Sbjct: 55 FTEFFHKLDLYFEGKPINLREPINLKTYPFRLSVFKEVMKIPWGKVMTYKQIADSLGT-- 112 Query: 126 AARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRL 176 + RAVG A+ NP+ ++IPCHRV+ +G +G YS G+ +K LL EG ++ Sbjct: 113 SPRAVGMALSKNPILLIIPCHRVIAENG-IGGYSRGVKLKRALLELEGVKI 162 >1WRJ-A nrPDB Length = 156 Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 6/116 (5%) Query: 65 WLNAYFHQPEAIEEFPVPALHHPV-FQQESFTRQVLWKLLKVVKFGEVISYQQLA-ALAG 122 + +F++ + E L PV F+ + R ++K + +K+GEV +Y+Q+A A+ Sbjct: 41 YFTDFFYKLDLYFEGKKVDLTEPVDFKPFNEFRIRVFKEVMRIKWGEVRTYKQVADAVKT 100 Query: 123 NPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGK 178 +P RAVG A+ N V ++IPCHRV+ ++G YS G+ +K LL EG + K Sbjct: 101 SP---RAVGTALSKNNVLLIIPCHRVI-GEKSLGGYSRGVELKRKLLELEGIDVAK 152 >4HDU-A nrPDB Length = 116 Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 106 VKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVG--NYSGGLA 163 + +G+V +Y ++A G P AR VG AM+ +P HRV+ S G + + S G Sbjct: 17 IPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQ 76 Query: 164 VKEWLLAHEGHRLGKPGLG 182 ++ L EG + + LG Sbjct: 77 RQKDRLEEEGVEIYQTSLG 95 >2KIM-A nrPDB Length = 108 Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 92 ESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCS 151 + F Q+ + ++ K G+V +Y ++A +AG P AR VG A+ P +P RV+ S Sbjct: 2 DQFLVQIFAVIHQIPK-GKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINS 60 Query: 152 SGAVGNYSGGLAVKEWLLAHEGHRLGKPG 180 G + L ++ L EG + + G Sbjct: 61 QGKISLKGRDLDRQKQKLEAEGIEVSEIG 89 >1ASZ-A nrPDB Length = 490 Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 150 CSSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGAWLKGAGATSGSPPAGRN 207 +G + LA K++ H LG P GGSS + KG + SP + Sbjct: 183 IQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQ 240 >5TGT-A nrPDB Length = 502 Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 53 LGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVI 112 LGGP ++ +WLN + + +++EEF Q+ + + L K+ V+ G V Sbjct: 316 LGGPIFDLEKLSWLNGQWIREQSVEEFAREV------QKWALNPEYLMKIAPHVQ-GRVE 368 Query: 113 SYQQLAALAG 122 ++ Q+A LAG Sbjct: 369 NFSQIAPLAG 378 >6DHT-A nrPDB Length = 569 Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 39 SAADAVEVPAPAAVLGGPEPLMQCTAWL 66 SA+D +E P P ++GGP P Q A+ Sbjct: 501 SASDDIEDPIPGFLVGGPNPGQQDGAFY 528 >3H3K-A nrPDB Length = 537 Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Query: 14 SPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQ 61 +PLG+ ++G G ++ S AD V+ P P V+GGP +Q Sbjct: 442 NPLGQCYVTGF--GQRPVRHPHHRPSVADDVDHPVPGMVVGGPNRHLQ 487 >4O7O-A nrPDB Length = 455 Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Query: 94 FTRQVLWKLLKVVKFG--EVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCS 151 F R+ + K+ + V G I ++ AGNP AR +G G P P + + Sbjct: 150 FDRRAILKVFRRVSSGINPDIELNRVLTRAGNPHVARLLGAYQFGRPNR--SPTDALAYA 207 Query: 152 SGAVGNYSGGLAVKEWLLAHEGHR 175 G V Y A + W +A R Sbjct: 208 LGMVTEYEAN-AAEGWAMATASVR 230 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1EH7-A nrPDB 326 4e-90 1QNT-A nrPDB 275 1e-74 3L00-A nrPDB 264 2e-71 4BHB-A nrPDB 186 5e-48 1SFE-A nrPDB 185 9e-48 4ZYE-A nrPDB 146 9e-36 1WRJ-A nrPDB 138 2e-33 2G7H-A nrPDB 124 3e-29 1MGT-A nrPDB 118 2e-27 4HDU-A nrPDB 113 5e-26 Sequences not found previously or not previously below threshold: 2KIM-A nrPDB 74 5e-14 1SJ8-A nrPDB 30 0.79 4N06-A nrPDB 30 0.91 5NL1-A nrPDB 29 1.1 1SJ7-A nrPDB 29 1.1 1UBR-S nrPDB 28 2.6 3H3K-A nrPDB 28 2.8 1H2A-S nrPDB 28 2.9 6EC3-A nrPDB 27 4.5 5HUQ-A nrPDB 27 5.9 2JI4-A nrPDB 27 6.7 >1EH7-A nrPDB Length = 207 Score = 326 bits (836), Expect = 4e-90, Method: Composition-based stats. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM 60 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM Sbjct: 1 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM 60 Query: 61 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL 120 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL Sbjct: 61 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL 120 Query: 121 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPG 180 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPG Sbjct: 121 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPG 180 Query: 181 LGGSSGLAGAWLKGAGATSGSPPAGRN 207 LGGSSGLAGAWLKGAGATSGSPPAGRN Sbjct: 181 LGGSSGLAGAWLKGAGATSGSPPAGRN 207 >1QNT-A nrPDB Length = 176 Score = 275 bits (702), Expect = 1e-74, Method: Composition-based stats. Identities = 176/176 (100%), Positives = 176/176 (100%) Query: 1 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM 60 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM Sbjct: 1 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM 60 Query: 61 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL 120 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL Sbjct: 61 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL 120 Query: 121 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRL 176 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRL Sbjct: 121 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRL 176 >3L00-A nrPDB Length = 182 Score = 264 bits (675), Expect = 2e-71, Method: Composition-based stats. Identities = 158/177 (89%), Positives = 159/177 (89%) Query: 2 DKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQ 61 DKDCEMKRTTLDSPLGKLELSGCEQGLHEI LGKGTSAADAVEVPAPAAVLGGPEPLMQ Sbjct: 5 DKDCEMKRTTLDSPLGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQ 64 Query: 62 CTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALA 121 TAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISY LAALA Sbjct: 65 ATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALA 124 Query: 122 GNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGK 178 GNP A AV A+ GNPVPILIPCHRVV VG Y GGLAVKEWLLAHEGHRLGK Sbjct: 125 GNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGK 181 >4BHB-A nrPDB Length = 165 Score = 186 bits (472), Expect = 5e-48, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 83/166 (50%), Gaps = 16/166 (9%) Query: 11 TLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYF 70 T+DSP+G L L+G L +++L + + P P A G + L NAYF Sbjct: 6 TIDSPIGPLTLAGHGSVLTNLRMLEQTYEPSRTHWTPDPGAFSGAVDQL-------NAYF 58 Query: 71 HQPEAIEEFPVP-ALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARA 129 + EF V L FQQ +WK L + +GE SY ++A G P AARA Sbjct: 59 A--GELTEFDVELDLRGTDFQQR------VWKALLTIPYGETRSYGEIADQIGAPGAARA 110 Query: 130 VGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHR 175 VG A NP+ I++PCHRV+ +SG + Y GG+ K LL E R Sbjct: 111 VGLANGHNPIAIIVPCHRVIGASGKLTGYGGGINRKRALLELEKSR 156 >1SFE-A nrPDB Length = 180 Score = 185 bits (470), Expect = 9e-48, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 13 DSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM--QCTAWLNAYF 70 D LG+ ++ E+G+ I L + ++ PAA P LM Q + A Sbjct: 21 DCELGRCLVAESERGICAILLGDDDATLISELQQMFPAAD-NAPADLMFQQHVREVIASL 79 Query: 71 HQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAV 130 +Q + P+ + FQQ+ +W+ L+ + GE +SYQQLA G PKA RAV Sbjct: 80 NQRDTPLTLPL-DIRGTAFQQQ------VWQALRTIPCGETVSYQQLANAIGKPKAVRAV 132 Query: 131 GGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGH 174 A N + I+IPCHRVV G++ Y G++ K LL E Sbjct: 133 ASACAANKLAIVIPCHRVVRGDGSLSGYRWGVSRKAQLLRREAE 176 >4ZYE-A nrPDB Length = 164 Score = 146 bits (367), Expect = 9e-36, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 22/163 (13%) Query: 14 SPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQP 73 SPLG + ++ ++G + V G + +FH+ Sbjct: 22 SPLGYITVAKDDKGFIMLDFCD---------------CVEGNSRD----DSSFTEFFHKL 62 Query: 74 EAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGA 133 + E L P+ + R ++K + + +G+V++Y+Q+A G + RAVG A Sbjct: 63 DLYFEGKPINLREPINLKTYPFRLSVFKEVMKIPWGKVMTYKQIADSLGT--SPRAVGMA 120 Query: 134 MRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRL 176 + NP+ ++IPCHRV+ +G +G YS G+ +K LL EG ++ Sbjct: 121 LSKNPILLIIPCHRVIAENG-IGGYSRGVKLKRALLELEGVKI 162 >1WRJ-A nrPDB Length = 156 Score = 138 bits (347), Expect = 2e-33, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 23/166 (13%) Query: 14 SPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQP 73 SP G + ++ E+G + E + +F++ Sbjct: 9 SPFGPITVAKNEKGFVMLDFCD-------------------CAERSSLDNDYFTDFFYKL 49 Query: 74 EAIEEFPVPALHHPV-FQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGG 132 + E L PV F+ + R ++K + +K+GEV +Y+Q+A + RAVG Sbjct: 50 DLYFEGKKVDLTEPVDFKPFNEFRIRVFKEVMRIKWGEVRTYKQVADAVKT--SPRAVGT 107 Query: 133 AMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGK 178 A+ N V ++IPCHRV+ ++G YS G+ +K LL EG + K Sbjct: 108 ALSKNNVLLIIPCHRVI-GEKSLGGYSRGVELKRKLLELEGIDVAK 152 >2G7H-A nrPDB Length = 167 Score = 124 bits (311), Expect = 3e-29, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 11/126 (8%) Query: 50 AAVLGGPEP--LMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVK 107 V+ PE L L YF + I++ V L + FT++VL ++K ++ Sbjct: 37 GEVVSNPEDEHLKVAEIILKLYFAE---IDDKKVRELISYKLEVPEFTKKVL-DIVKDIE 92 Query: 108 FGEVISYQQLAA-LAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKE 166 FG+ ++Y +A L +P RAVG A++ NP+P++IPCHRVV + ++G YS GL K+ Sbjct: 93 FGKTLTYGDIAKKLNTSP---RAVGMALKRNPLPLIIPCHRVV-AKNSLGGYSYGLDKKK 148 Query: 167 WLLAHE 172 ++L E Sbjct: 149 FILERE 154 >1MGT-A nrPDB Length = 174 Score = 118 bits (295), Expect = 2e-27, Method: Composition-based stats. Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 12/111 (10%) Query: 73 PEAIEEFPVPALHHPVFQQE-------SFTRQVLWKLLKVVKFGEVISYQQLA-ALAGNP 124 PE + + + L + F +E F ++V L K VK G VI+Y LA AL +P Sbjct: 64 PEKVFKVLIGELDNASFLRELSFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSP 123 Query: 125 KAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHR 175 RAVGGAM+ NP PI++PCHRVV G +G YS G+ K++LL EG + Sbjct: 124 ---RAVGGAMKRNPYPIVVPCHRVVAHDG-IGYYSSGIEEKKFLLEIEGVK 170 >4HDU-A nrPDB Length = 116 Score = 113 bits (283), Expect = 5e-26, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 90 QQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVV 149 + ++ + + +G+V +Y ++A G P AR VG AM+ +P HRV+ Sbjct: 1 MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVI 60 Query: 150 CSSGAVG--NYSGGLAVKEWLLAHEGHRLGKPGLG 182 S G + + S G ++ L EG + + LG Sbjct: 61 NSRGTISKRDISAGEQRQKDRLEEEGVEIYQTSLG 95 >2KIM-A nrPDB Length = 108 Score = 74.0 bits (180), Expect = 5e-14, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%) Query: 95 TRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGA 154 ++ ++ + G+V +Y ++A +AG P AR VG A+ P +P RV+ S G Sbjct: 4 FLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGK 63 Query: 155 VGNYSGGLAVKEWLLAHEGHRLGKPG 180 + L ++ L EG + + G Sbjct: 64 ISLKGRDLDRQKQKLEAEGIEVSEIG 89 >1SJ8-A nrPDB Length = 308 Score = 29.7 bits (65), Expect = 0.79, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 148 VVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGA---WLKGAGATSGSP 202 V S + S G+ + LL EG G+P L + GLAGA L+ A S P Sbjct: 96 VTTISSNLTEMSRGVKLLAALLEDEGGN-GRPLLQAAKGLAGAVSELLRSAQPASAEP 152 >4N06-A nrPDB Length = 347 Score = 29.7 bits (65), Expect = 0.91, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%) Query: 57 EPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQ 116 E L++ ++A ++ + +E + + + E + W + +V E + Sbjct: 135 ESLLKAKKEIDACLNELDGVEAEMIDKVRERLLGIEGKASKHYWDAISLVIPEEYRFNGR 194 Query: 117 LAALAGNPKAARAVGGAM 134 G+P+ A+ + AM Sbjct: 195 RGIEIGSPRYAKDIVNAM 212 >5NL1-A nrPDB Length = 156 Score = 29.4 bits (64), Expect = 1.1, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 148 VVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGA---WLKGAGATSGSP 202 V S + S G+ + LL EG G+P L + GLAGA L+ A S P Sbjct: 98 VTTISSNLTEMSRGVKLLAALLEDEGGN-GRPLLQAAKGLAGAVSELLRSAQPASAEP 154 >1SJ7-A nrPDB Length = 174 Score = 29.4 bits (64), Expect = 1.1, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 148 VVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGA---WLKGAGATSGSP 202 V S + S G+ + LL EG G+P L + GLAGA L+ A S P Sbjct: 96 VTTISSNLTEMSRGVKLLAALLEDEGGN-GRPLLQAAKGLAGAVSELLRSAQPASAEP 152 >1UBR-S nrPDB Length = 267 Score = 28.2 bits (61), Expect = 2.6, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 97 QVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPIL 142 ++L K V+ +G ++ + A NP A+ V A++ V + Sbjct: 100 RILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAI 145 >3H3K-A nrPDB Length = 537 Score = 28.2 bits (61), Expect = 2.8, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 15 PLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTA 64 PLG+ ++G Q ++ S AD V+ P P V+GGP +Q Sbjct: 443 PLGQCYVTGFGQ--RPVRHPHHRPSVADDVDHPVPGMVVGGPNRHLQDEI 490 >1H2A-S nrPDB Length = 317 Score = 28.2 bits (61), Expect = 2.9, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 97 QVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPIL 142 ++L K V+ +G ++ + A NP A+ V A++ V + Sbjct: 150 RILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAI 195 >6EC3-A nrPDB Length = 471 Score = 27.4 bits (59), Expect = 4.5, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 12/30 (40%) Query: 118 AALAGNPKAARAVGGAMRGNPVPILIPCHR 147 AA G+P A ++ +P HR Sbjct: 342 AAFVGSPVVPTAFALVLKEPKRAAGVPWHR 371 >5HUQ-A nrPDB Length = 433 Score = 27.0 bits (58), Expect = 5.9, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 6 EMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTS--AADAVEVPAPAAVLGGPEPLMQCT 63 E +LD+P+G +L +G H I ++ + + P L P + Sbjct: 41 ETVEKSLDNPIGSDKLEELARGKHNIVIISSDHTRPVPSHIITPILLRRLRSVAPDARIR 100 Query: 64 AWLNAYFHQPEAIEEF 79 + FH+P EE Sbjct: 101 ILVATGFHRPSTHEEL 116 >2JI4-A nrPDB Length = 379 Score = 26.7 bits (57), Expect = 6.7, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 13/158 (8%) Query: 3 KDCEM-KRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQ 61 K C+M KR ++ S L L C+ GL + + + P ++ Sbjct: 125 KQCKMRKRGSIVSKL--LASMMCKAGLTHLITMD--------LHQKEIQGFFNIPVDNLR 174 Query: 62 CTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVI-SYQQLAAL 120 + +L Y + V P + + + +L V GE + L Sbjct: 175 ASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDG 234 Query: 121 AGNPKAARAVGGAMRGNPVPILIPCHR-VVCSSGAVGN 157 +P R+V +P+LIP + + G VG Sbjct: 235 RHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGG 272 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.126 0.334 Lambda K H 0.267 0.0390 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,636,952 Number of Sequences: 36641 Number of extensions: 289144 Number of successful extensions: 803 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 759 Number of HSP's gapped (non-prelim): 38 length of query: 207 length of database: 10,336,785 effective HSP length: 93 effective length of query: 114 effective length of database: 6,929,172 effective search space: 789925608 effective search space used: 789925608 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 56 (26.3 bits)