BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P16444 (411 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1ITU-A nrPDB 766 0.0 3ID7-A nrPDB 290 1e-78 5NRT-A nrPDB 281 4e-76 3FDG-A nrPDB 130 1e-30 3LU2-A nrPDB 121 5e-28 2I5G-A nrPDB 110 1e-24 3B40-A nrPDB 96 3e-20 2RAG-A nrPDB 88 7e-18 3DOO-A nrPDB 30 2.1 5N1Q-A nrPDB 28 7.9 >1ITU-A nrPDB Length = 369 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/369 (100%), Positives = 369/369 (100%) Query: 17 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFV 76 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFV Sbjct: 1 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFV 60 Query: 77 GGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVAS 136 GGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVAS Sbjct: 61 GGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVAS 120 Query: 137 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG 196 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG Sbjct: 121 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG 180 Query: 197 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 256 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV Sbjct: 181 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240 Query: 257 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLE 316 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLE Sbjct: 241 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLE 300 Query: 317 DVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGS 376 DVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGS Sbjct: 301 DVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGS 360 Query: 377 CRTHYGYSS 385 CRTHYGYSS Sbjct: 361 CRTHYGYSS 369 >3ID7-A nrPDB Length = 400 Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 163/397 (41%), Positives = 223/397 (56%), Gaps = 47/397 (11%) Query: 21 DEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQF 80 ++A ++R+ PV+DGHNDLPW L + L A HT++ +LR+G VG Q+ Sbjct: 5 EKARELLREFPVVDGHNDLPWALREQVRYDLDARDIAADQSAHLHTDLARLRSGGVGAQY 64 Query: 81 WSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGV 140 WSVY D AV TLEQ+D V R+ +P ++A + A EG++ASL+G Sbjct: 65 WSVYVRSDLPG--AVTATLEQIDCVRRLIDRHPGELRAALTAADMEAARAEGRIASLMGA 122 Query: 141 EGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVV 200 EGGHSID+SL LRALY LG+RY+TLTH+ N WAD + EP GLS FG+ VV Sbjct: 123 EGGHSIDNSLATLRALYALGVRYMTLTHNDNNAWAD-----SATDEPGVGGLSAFGREVV 177 Query: 201 KELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVKQTD 260 +E+NR G+L+DL+HV+ TM+ L S APVIFSHSS+ +VC RN+PDDVL + Sbjct: 178 REMNREGMLVDLSHVAATTMRDALDTSTAPVIFSHSSSRAVCDHPRNIPDDVLERLSANG 237 Query: 261 SLVMVNFYNNY-----ISCTNKAN----------------------------------LS 281 + MV F + + T +A+ +S Sbjct: 238 GMAMVTFVPKFVLQAAVDWTAEADDNMRAHGFHHLDSSPEAMKVHAAFEERVPRPVATVS 297 Query: 282 QVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGA 341 VADHLDH++EVAG +G GGD+DG P P+GL DVS YP+LIAELL R W+++++ Sbjct: 298 TVADHLDHMREVAGVDHLGIGGDYDGTPFTPDGLGDVSGYPNLIAELLDRGWSQSDLAKL 357 Query: 342 LADNLLRVFEAVEQAS-NLTQAPEEEPIPLDQLGGSC 377 N +RV +A E S L A ++QL G+ Sbjct: 358 TWKNAVRVLDAAEDVSRGLRAARGPSNATIEQLDGTA 394 >5NRT-A nrPDB Length = 401 Score = 281 bits (719), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 147/355 (41%), Positives = 221/355 (62%), Gaps = 11/355 (3%) Query: 19 FRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGG 78 ++A R++++ P+IDGHND P+ + F N + + A+L + T++ +L+ G +GG Sbjct: 19 IEEQATRLLKEVPLIDGHNDFPYMIRGWFRNDINGQDAHLYDMPIGQTDLQRLQKGLLGG 78 Query: 79 QFWSVYTPC------DTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREG 132 QFWS + PC + + +A+R+TL+Q+DV+HR+ +P + S+A I +FR G Sbjct: 79 QFWSAFVPCPKNPDKEVGSLEALRQTLQQLDVIHRLIERHPTILQFADSAASIWSSFRAG 138 Query: 133 KVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGL 192 +VASLIG+EG H I S+ LR L++LG+RY+TLTH+C+ +AD V S GL Sbjct: 139 RVASLIGIEGLHQIADSVSALRMLHRLGVRYVTLTHNCHNAFADAATV----SPELHGGL 194 Query: 193 SPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDV 252 S G+R+++ELNR+G++IDL+H S L+LSRAPVI+SHSS YS+ A RNV D+ Sbjct: 195 SRKGERLIRELNRMGMMIDLSHTSHEAQTQALRLSRAPVIYSHSSIYSLRAHARNVTDEN 254 Query: 253 LRLVKQTDSLVMVNFYNNYI-SCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRV 311 L L+ + +VM+ F + S ++A L+ V DH+ + G VG G DFDG+ R Sbjct: 255 LHLLHRNRGVVMICFLRELLASEADQATLAHVIDHIIYAGTRIGYEHVGIGSDFDGMLRG 314 Query: 312 PEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLTQAPEEE 366 P+GL DVS YP L+A LL R +E +VK + N++RV E VE+ + Q EE Sbjct: 315 PDGLHDVSCYPALVAGLLERGVSEEDVKRVMGLNVIRVLEEVERVAAELQGAGEE 369 >3FDG-A nrPDB Length = 355 Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 159/350 (45%), Gaps = 34/350 (9%) Query: 31 PVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQ 90 PV DGHND LL + N E L H ++P+++ G G F+++Y P Q Sbjct: 6 PVFDGHNDF---LLRLLRNPANRETIWLKGDGTGHLDLPRMKEGGFAGGFFAIYVPS-PQ 61 Query: 91 NKDAVR------------------RTLEQMDVVHRMC-------RMYPETFLYVTSSAGI 125 DA R + V M R F ++A + Sbjct: 62 AHDAAHFEAMMDAPPFELPLPPMIRAEQAQPVALAMAGHLLWMERAARGRFKVCRTAAEV 121 Query: 126 RQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDS 185 R +G V+ ++ +EG +I + L L + LG+R L S T + S Sbjct: 122 RSCHADGIVSGIMHMEGAEAIGADLDALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPGS 181 Query: 186 EPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASR 245 +GL+ G+R+V E NRL +++DL+H++ +LS AP++ +HS+A++V S Sbjct: 182 PDTGEGLTEAGRRLVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPST 241 Query: 246 RNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQ----VADHLDHIKEVAGARAVGF 301 RN+ D L +++++ +V +NF +++ + + V HLDH+ + G VG Sbjct: 242 RNLTDRQLAMIRESRGMVGLNFATSFLREDGRRSAEMGWEPVLRHLDHLIDRLGEDHVGM 301 Query: 302 GGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFE 351 G DFDG +P+G+ DV+ P L A + + E ++ +N + E Sbjct: 302 GSDFDGA-TIPQGIADVTGLPALQAAMRAHGYDEPLMRKLCHENWYGLLE 350 >3LU2-A nrPDB Length = 311 Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 120/217 (55%), Gaps = 8/217 (3%) Query: 131 EGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQ 190 E K+ +++ +EG I L L L G+ + LT W + L G E + Sbjct: 98 EDKIGAMLTLEGIEPIGRDLDKLTQLLDGGVLSVGLT------WNNANLAADGIMEERGA 151 Query: 191 GLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPD 250 GL+ FG+ ++ LN V D++H+SV TL+ + VI SHSSA ++CA RN+ D Sbjct: 152 GLTRFGKDIIHLLNERKVFTDVSHLSVKAFWETLEQAEF-VIASHSSAKAICAHPRNLDD 210 Query: 251 DVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPR 310 + ++ + + D+++ V F+ + + A++ V H+DHI E+ G + +GFG DFDG+P Sbjct: 211 EQIKAMIEHDAMIHVIFHPLFTTNDGVADIEDVIRHIDHICELGGMKNIGFGSDFDGIPD 270 Query: 311 VPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLL 347 +GLE KY + + E L +++T+ EV+G + N L Sbjct: 271 HVKGLEHAGKYQNFL-ETLGKHYTKEEVEGFASRNFL 306 >2I5G-A nrPDB Length = 325 Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 131/291 (45%), Gaps = 31/291 (10%) Query: 87 CDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSI 146 C + + T+ + +++ R + + V S+A IR+A +GK L G + H+ Sbjct: 39 CTVSVWEGFQATVNNITASNKLIRDNSDLVIPVRSTADIRKAKEQGKTGILYGFQNAHAF 98 Query: 147 DSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRL 206 + +G + QLG+ + + ++ LV TG E + GLS FG+ +V E+NR+ Sbjct: 99 EDQIGYVEVFKQLGVGIVQMCYNTQN------LVGTGCYE-RDGGLSGFGREIVAEMNRV 151 Query: 207 GVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVN 266 G++ DL+HV T + + S+ PV +SH + RN D+ L+ + V V Sbjct: 152 GIMCDLSHVGSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFIADHGGFVGVT 211 Query: 267 FYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDF---------------DGVPRV 311 + ++ + + A+ ++++ + G A+G G DF G R Sbjct: 212 MFAPFLKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTDFTQGHGHDFFEWLTHDKGYARR 271 Query: 312 ---------PEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAV 353 P G+ V ++P+L LL+R E V+ + +N +RV V Sbjct: 272 LTNFGKIVNPLGIRTVGEFPNLTETLLKRGMPERVVRKVMGENWVRVLRDV 322 >3B40-A nrPDB Length = 417 Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/318 (24%), Positives = 135/318 (42%), Gaps = 59/318 (18%) Query: 104 VVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRY 163 ++ M R +P S R+ EGK A ++ + + + L L G+R Sbjct: 101 ILTGMVRDFPNQVGIAYSPEDFRRLAMEGKFAIVMSMLNAYPLGDDLSQLDKWAARGVRM 160 Query: 164 LTLTHSCNTPWADNW--LVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMK 221 ++ N WAD+ L DS GLSP G++ V+ LN LGV+ID++ +S ++ Sbjct: 161 FGFSYVGNNDWADSSRPLPFFNDSPDALGGLSPLGKQAVERLNDLGVIIDVSQMSTKALE 220 Query: 222 ATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLV-MVNF------------- 267 LSRAP++ SHS+ ++ +RN+ D ++L+K + ++ +V F Sbjct: 221 QVAALSRAPIVASHSAPRALVDIKRNLSDHEMQLIKDSGGVIQVVGFPAYLRPLSKPTLD 280 Query: 268 -----------------------------------YNNYISC-------TNKANLSQVAD 285 + Y S KA L ++ D Sbjct: 281 KLDALRARFDLPPLEGLDYALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVD 340 Query: 286 HLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADN 345 +D+ + G VG DF+ V +G +DVS+ ++ AEL+ R +++A++ N Sbjct: 341 AIDYTVKKVGIDHVGISSDFNDGGGV-DGWKDVSEIRNVTAELITRGYSDADIAKLWGGN 399 Query: 346 LLRVFEAVEQASNLTQAP 363 LR + V++ + T P Sbjct: 400 FLRAWGEVQKRAKPTATP 417 >2RAG-A nrPDB Length = 417 Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 61/342 (17%) Query: 64 THTNIPKLRAGFVGGQFWSVYT-------PCDTQNKD-AVRRTLEQMDVVHRMCRMYPET 115 + ++P++ G + G F+ VY T +D A+ RT+E + M P+T Sbjct: 78 SQVDLPRMNQGGLDGGFFVVYIGQGELTEKGYTYARDYALHRTIE----IREMLAANPDT 133 Query: 116 FLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWA 175 F +S R+ + GK + + +E + L ++ Y+ G+R H N A Sbjct: 134 FEMALTSDDARRIAKAGKKFAFVSMENSWPVGEDLSLVETFYKEGLRMAGPVHFRNNQLA 193 Query: 176 DNWLVDTGDSEPQSQ---GLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVI 232 D+ ++P+ + G SP G R + E NRLG++ID++H S + ++ LS+AP+I Sbjct: 194 DS------STDPKGKIWNGYSPLGLRWLAEANRLGIVIDVSHASDDVVDQSVALSKAPII 247 Query: 233 FSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVN---FYNNYISCTNKANLSQVADHLD- 288 SHS +V RN+ D L+ + + +N + S KA L + D Sbjct: 248 ASHSGPKAVYDHPRNLDDARLKKIADAGGAICINSIYLTDTTPSPERKAALEALGRAPDM 307 Query: 289 ------HIKEVAGARAV------GFGGDFD-------GVPRV--PEGL------------ 315 +K A RA GDFD V +V P+G+ Sbjct: 308 KTATPEAVKAYADKRAAIDKAHPAARGDFDLYMKSMLHVLKVAGPKGVCVGADWDGGGGM 367 Query: 316 ---EDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVE 354 ED++ P + A L +++A+++ + N+LR+ +A + Sbjct: 368 DGFEDITDLPKITARLKAEGYSDADIEAIWSGNVLRIVDAAQ 409 >3DOO-A nrPDB Length = 277 Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 243 ASRRNVPDDVLRLVKQTDSLV--MVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVG 300 + + + +++ ++V+ T ++ ++ +NN+ NK NLS HLD + G Sbjct: 127 GASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAG 186 Query: 301 FGGDFDGV 308 G+ D V Sbjct: 187 MNGNTDSV 194 >5N1Q-A nrPDB Length = 553 Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust. Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 39/169 (23%) Query: 117 LYVTSSAGIRQAFREGKVASLIGVEGGHSI-DSSLGVLRALYQLGMRYLTLTHSC----- 170 L+ ++A I+Q + + + ++G++ GH++ + LGV + T+ HS Sbjct: 90 LHFMNNAAIQQMWDDIRRTVIVGMDTGHAVLEKRLGVEVTPETINEYMATINHSLPGGAV 149 Query: 171 ----------NTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATM 220 + W + TGD E + ++ + ++N+L + A Sbjct: 150 VQEHMVEVHPSLAWDCYAKIFTGDDELADE----LDKKYLIDINKLFPEEQAEQLKAAIG 205 Query: 221 KATLQLSRAPVI-------------------FSHSSAYSVCASRRNVPD 250 K T Q+SR P + S +AY +CA + D Sbjct: 206 KKTYQVSRVPTLVGRVCDGGTIARWSAMQIGMSFITAYKLCAGEAAIAD 254 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1ITU-A nrPDB 542 e-154 5NRT-A nrPDB 452 e-127 3ID7-A nrPDB 424 e-119 3FDG-A nrPDB 371 e-103 2I5G-A nrPDB 308 3e-84 2RAG-A nrPDB 288 4e-78 3B40-A nrPDB 286 1e-77 3LU2-A nrPDB 269 2e-72 Sequences not found previously or not previously below threshold: 3JCM-G nrPDB 35 0.045 1WYT-A nrPDB 34 0.13 4DZI-A nrPDB 33 0.20 3IFZ-A nrPDB 32 0.74 5ANZ-A nrPDB 31 0.91 3MKV-A nrPDB 31 1.2 6FV3-A nrPDB 30 1.9 3UW3-A nrPDB 29 3.8 4C50-A nrPDB 29 4.1 6HZK-A nrPDB 29 4.7 1NX9-A nrPDB 29 5.0 4QAI-A nrPDB 28 7.3 1NNE-A nrPDB 28 9.6 4UOQ-A nrPDB 28 9.7 CONVERGED! >1ITU-A nrPDB Length = 369 Score = 542 bits (1396), Expect = e-154, Method: Composition-based stats. Identities = 369/369 (100%), Positives = 369/369 (100%) Query: 17 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFV 76 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFV Sbjct: 1 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFV 60 Query: 77 GGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVAS 136 GGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVAS Sbjct: 61 GGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVAS 120 Query: 137 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG 196 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG Sbjct: 121 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG 180 Query: 197 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 256 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV Sbjct: 181 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240 Query: 257 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLE 316 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLE Sbjct: 241 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLE 300 Query: 317 DVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGS 376 DVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGS Sbjct: 301 DVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGS 360 Query: 377 CRTHYGYSS 385 CRTHYGYSS Sbjct: 361 CRTHYGYSS 369 >5NRT-A nrPDB Length = 401 Score = 452 bits (1163), Expect = e-127, Method: Composition-based stats. Identities = 147/355 (41%), Positives = 221/355 (62%), Gaps = 11/355 (3%) Query: 19 FRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGG 78 ++A R++++ P+IDGHND P+ + F N + + A+L + T++ +L+ G +GG Sbjct: 19 IEEQATRLLKEVPLIDGHNDFPYMIRGWFRNDINGQDAHLYDMPIGQTDLQRLQKGLLGG 78 Query: 79 QFWSVYTPC------DTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREG 132 QFWS + PC + + +A+R+TL+Q+DV+HR+ +P + S+A I +FR G Sbjct: 79 QFWSAFVPCPKNPDKEVGSLEALRQTLQQLDVIHRLIERHPTILQFADSAASIWSSFRAG 138 Query: 133 KVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGL 192 +VASLIG+EG H I S+ LR L++LG+RY+TLTH+C+ +AD V S GL Sbjct: 139 RVASLIGIEGLHQIADSVSALRMLHRLGVRYVTLTHNCHNAFADAATV----SPELHGGL 194 Query: 193 SPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDV 252 S G+R+++ELNR+G++IDL+H S L+LSRAPVI+SHSS YS+ A RNV D+ Sbjct: 195 SRKGERLIRELNRMGMMIDLSHTSHEAQTQALRLSRAPVIYSHSSIYSLRAHARNVTDEN 254 Query: 253 LRLVKQTDSLVMVNFYNNYI-SCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRV 311 L L+ + +VM+ F + S ++A L+ V DH+ + G VG G DFDG+ R Sbjct: 255 LHLLHRNRGVVMICFLRELLASEADQATLAHVIDHIIYAGTRIGYEHVGIGSDFDGMLRG 314 Query: 312 PEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLTQAPEEE 366 P+GL DVS YP L+A LL R +E +VK + N++RV E VE+ + Q EE Sbjct: 315 PDGLHDVSCYPALVAGLLERGVSEEDVKRVMGLNVIRVLEEVERVAAELQGAGEE 369 >3ID7-A nrPDB Length = 400 Score = 424 bits (1091), Expect = e-119, Method: Composition-based stats. Identities = 162/397 (40%), Positives = 220/397 (55%), Gaps = 47/397 (11%) Query: 21 DEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQF 80 ++A ++R+ PV+DGHNDLPW L + L A HT++ +LR+G VG Q+ Sbjct: 5 EKARELLREFPVVDGHNDLPWALREQVRYDLDARDIAADQSAHLHTDLARLRSGGVGAQY 64 Query: 81 WSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGV 140 WSVY D AV TLEQ+D V R+ +P ++A + A EG++ASL+G Sbjct: 65 WSVYVRSDLPG--AVTATLEQIDCVRRLIDRHPGELRAALTAADMEAARAEGRIASLMGA 122 Query: 141 EGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVV 200 EGGHSID+SL LRALY LG+RY+TLTH+ N WAD+ EP GLS FG+ VV Sbjct: 123 EGGHSIDNSLATLRALYALGVRYMTLTHNDNNAWADSA-----TDEPGVGGLSAFGREVV 177 Query: 201 KELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVKQTD 260 +E+NR G+L+DL+HV+ TM+ L S APVIFSHSS+ +VC RN+PDDVL + Sbjct: 178 REMNREGMLVDLSHVAATTMRDALDTSTAPVIFSHSSSRAVCDHPRNIPDDVLERLSANG 237 Query: 261 SLVMVNFYNNYI---------------------------------------SCTNKANLS 281 + MV F ++ A +S Sbjct: 238 GMAMVTFVPKFVLQAAVDWTAEADDNMRAHGFHHLDSSPEAMKVHAAFEERVPRPVATVS 297 Query: 282 QVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGA 341 VADHLDH++EVAG +G GGD+DG P P+GL DVS YP+LIAELL R W+++++ Sbjct: 298 TVADHLDHMREVAGVDHLGIGGDYDGTPFTPDGLGDVSGYPNLIAELLDRGWSQSDLAKL 357 Query: 342 LADNLLRVFEAVEQAS-NLTQAPEEEPIPLDQLGGSC 377 N +RV +A E S L A ++QL G+ Sbjct: 358 TWKNAVRVLDAAEDVSRGLRAARGPSNATIEQLDGTA 394 >3FDG-A nrPDB Length = 355 Score = 371 bits (952), Expect = e-103, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 34/351 (9%) Query: 30 SPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDT 89 PV DGHND LL + N E L H ++P+++ G G F+++Y P Sbjct: 5 IPVFDGHNDF---LLRLLRNPANRETIWLKGDGTGHLDLPRMKEGGFAGGFFAIYVPS-P 60 Query: 90 QNKDAVR------------------RTLEQMDVVHRMC-------RMYPETFLYVTSSAG 124 Q DA R + V M R F ++A Sbjct: 61 QAHDAAHFEAMMDAPPFELPLPPMIRAEQAQPVALAMAGHLLWMERAARGRFKVCRTAAE 120 Query: 125 IRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGD 184 +R +G V+ ++ +EG +I + L L + LG+R L S T + Sbjct: 121 VRSCHADGIVSGIMHMEGAEAIGADLDALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPG 180 Query: 185 SEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCAS 244 S +GL+ G+R+V E NRL +++DL+H++ +LS AP++ +HS+A++V S Sbjct: 181 SPDTGEGLTEAGRRLVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPS 240 Query: 245 RRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQ----VADHLDHIKEVAGARAVG 300 RN+ D L +++++ +V +NF +++ + + V HLDH+ + G VG Sbjct: 241 TRNLTDRQLAMIRESRGMVGLNFATSFLREDGRRSAEMGWEPVLRHLDHLIDRLGEDHVG 300 Query: 301 FGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFE 351 G DFDG +P+G+ DV+ P L A + + E ++ +N + E Sbjct: 301 MGSDFDG-ATIPQGIADVTGLPALQAAMRAHGYDEPLMRKLCHENWYGLLE 350 >2I5G-A nrPDB Length = 325 Score = 308 bits (789), Expect = 3e-84, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 135/307 (43%), Gaps = 37/307 (12%) Query: 71 LRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFR 130 +R G + C + + T+ + +++ R + + V S+A IR+A Sbjct: 29 MRKGGLTAA------NCTVSVWEGFQATVNNITASNKLIRDNSDLVIPVRSTADIRKAKE 82 Query: 131 EGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQ 190 +GK L G + H+ + +G + QLG+ + + ++ LV TG E + Sbjct: 83 QGKTGILYGFQNAHAFEDQIGYVEVFKQLGVGIVQMCYNTQN------LVGTGCYE-RDG 135 Query: 191 GLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPD 250 GLS FG+ +V E+NR+G++ DL+HV T + + S+ PV +SH + RN D Sbjct: 136 GLSGFGREIVAEMNRVGIMCDLSHVGSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSD 195 Query: 251 DVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDF----- 305 + L+ + V V + ++ + + A+ ++++ + G A+G G DF Sbjct: 196 EELKFIADHGGFVGVTMFAPFLKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTDFTQGHG 255 Query: 306 ----------DGVPRV---------PEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNL 346 G R P G+ V ++P+L LL+R E V+ + +N Sbjct: 256 HDFFEWLTHDKGYARRLTNFGKIVNPLGIRTVGEFPNLTETLLKRGMPERVVRKVMGENW 315 Query: 347 LRVFEAV 353 +RV V Sbjct: 316 VRVLRDV 322 >2RAG-A nrPDB Length = 417 Score = 288 bits (736), Expect = 4e-78, Method: Composition-based stats. Identities = 88/389 (22%), Positives = 159/389 (40%), Gaps = 65/389 (16%) Query: 22 EAERIMRD-SPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQF 80 +A++ + D +D H D P + + ++P++ G + G F Sbjct: 38 KADKALHDKFLTLDTHLDTPAHFG---RPGWDIADHHEVEHDFSQVDLPRMNQGGLDGGF 94 Query: 81 WSVYT-------PCDTQNKD-AVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREG 132 + VY T +D A+ RT+E + M P+TF +S R+ + G Sbjct: 95 FVVYIGQGELTEKGYTYARDYALHRTIE----IREMLAANPDTFEMALTSDDARRIAKAG 150 Query: 133 KVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQ-- 190 K + + +E + L ++ Y+ G+R H N AD+ ++P+ + Sbjct: 151 KKFAFVSMENSWPVGEDLSLVETFYKEGLRMAGPVHFRNNQLADSS------TDPKGKIW 204 Query: 191 -GLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVP 249 G SP G R + E NRLG++ID++H S + ++ LS+AP+I SHS +V RN+ Sbjct: 205 NGYSPLGLRWLAEANRLGIVIDVSHASDDVVDQSVALSKAPIIASHSGPKAVYDHPRNLD 264 Query: 250 DDVLRLVKQTDSLVMVN---FYNNYISCTNKANLSQVADHLD-------HIKEVAGAR-- 297 D L+ + + +N + S KA L + D +K A R Sbjct: 265 DARLKKIADAGGAICINSIYLTDTTPSPERKAALEALGRAPDMKTATPEAVKAYADKRAA 324 Query: 298 ----AVGFGGDFDGVPR---------VPEGL---------------EDVSKYPDLIAELL 329 GDFD + P+G+ ED++ P + A L Sbjct: 325 IDKAHPAARGDFDLYMKSMLHVLKVAGPKGVCVGADWDGGGGMDGFEDITDLPKITARLK 384 Query: 330 RRNWTEAEVKGALADNLLRVFEAVEQASN 358 +++A+++ + N+LR+ +A + + Sbjct: 385 AEGYSDADIEAIWSGNVLRIVDAAQAYAK 413 >3B40-A nrPDB Length = 417 Score = 286 bits (731), Expect = 1e-77, Method: Composition-based stats. Identities = 79/377 (20%), Positives = 148/377 (39%), Gaps = 72/377 (19%) Query: 58 LTTLAGTHTNIPKLRAGFVGGQFWSVY-------------TPCDTQNKDAVRRTLEQMDV 104 + ++ K G + G +++ P +A + + + Sbjct: 42 VDKDGPGQLDLVKAGRGRLSGAALAIFGWPEMWNGPNAPHKPTPGFVDEARHQQEIRYKI 101 Query: 105 VHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYL 164 + M R +P S R+ EGK A ++ + + + L L G+R Sbjct: 102 LTGMVRDFPNQVGIAYSPEDFRRLAMEGKFAIVMSMLNAYPLGDDLSQLDKWAARGVRMF 161 Query: 165 TLTHSCNTPWADNW--LVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKA 222 ++ N WAD+ L DS GLSP G++ V+ LN LGV+ID++ +S ++ Sbjct: 162 GFSYVGNNDWADSSRPLPFFNDSPDALGGLSPLGKQAVERLNDLGVIIDVSQMSTKALEQ 221 Query: 223 TLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQ 282 LSRAP++ SHS+ ++ +RN+ D ++L+K + ++ V + Y+ +K L + Sbjct: 222 VAALSRAPIVASHSAPRALVDIKRNLSDHEMQLIKDSGGVIQVVGFPAYLRPLSKPTLDK 281 Query: 283 V-----------ADHLDH------------------------------------------ 289 + + LD+ Sbjct: 282 LDALRARFDLPPLEGLDYALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVDA 341 Query: 290 ---IKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNL 346 + G VG DF+ V +G +DVS+ ++ AEL+ R +++A++ N Sbjct: 342 IDYTVKKVGIDHVGISSDFNDGGGV-DGWKDVSEIRNVTAELITRGYSDADIAKLWGGNF 400 Query: 347 LRVFEAVEQASNLTQAP 363 LR + V++ + T P Sbjct: 401 LRAWGEVQKRAKPTATP 417 >3LU2-A nrPDB Length = 311 Score = 269 bits (687), Expect = 2e-72, Method: Composition-based stats. Identities = 85/316 (26%), Positives = 153/316 (48%), Gaps = 15/316 (4%) Query: 32 VIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQN 91 VID H D ++L + + N +L + Q ++++ D Sbjct: 6 VIDTHCDALYKL------QAGKGKYTFQDAEELDVNFERLIEAKMLLQGFAIFLDEDIPV 59 Query: 92 KDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLG 151 + ++ +EQ+++ + +V + E K+ +++ +EG I L Sbjct: 60 EHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLENL-PEDKIGAMLTLEGIEPIGRDLD 118 Query: 152 VLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLID 211 L L G+ + LT W + L G E + GL+ FG+ ++ LN V D Sbjct: 119 KLTQLLDGGVLSVGLT------WNNANLAADGIMEERGAGLTRFGKDIIHLLNERKVFTD 172 Query: 212 LAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVNFYNNY 271 ++H+SV TL+ + VI SHSSA ++CA RN+ D+ ++ + + D+++ V F+ + Sbjct: 173 VSHLSVKAFWETLEQAEF-VIASHSSAKAICAHPRNLDDEQIKAMIEHDAMIHVIFHPLF 231 Query: 272 ISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRR 331 + A++ V H+DHI E+ G + +GFG DFDG+P +GLE KY + + E L + Sbjct: 232 TTNDGVADIEDVIRHIDHICELGGMKNIGFGSDFDGIPDHVKGLEHAGKYQNFL-ETLGK 290 Query: 332 NWTEAEVKGALADNLL 347 ++T+ EV+G + N L Sbjct: 291 HYTKEEVEGFASRNFL 306 >3JCM-G nrPDB Length = 899 Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 13/104 (12%) Query: 41 WQLLDMFN------NRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDA 94 + +L+ + L + L + + I L+ + PCDT Sbjct: 466 YAILEWLRESGEYESELNNVDQILEKMPHSKVQIAVLKK-------LIQWDPCDTVLWSR 518 Query: 95 VRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLI 138 ++ E + + + E +S IR RE L+ Sbjct: 519 LKMATESYHKIEELLAFFQELLFQTKNSDDIRANMREKSPGLLM 562 >1WYT-A nrPDB Length = 438 Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 14/145 (9%) Query: 12 AVCTADFFRDEAERIMRDSPVIDGHNDLP-WQLLDMFN----NRLQDERANLTTLAGTHT 66 A D F + I+ SP ID LP W++L+ L +A L +H Sbjct: 20 AASLEDLFAHLPKEIL--SPPIDLPEPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHH 77 Query: 67 NIPKLRAGFVGGQFWSVYTPCDTQNKDA-VRRTLEQMDVVHRMCR---MYPETFLYVTSS 122 P ++A G+F + YTP + ++ T E ++ + + T+ Sbjct: 78 VPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATAL 137 Query: 123 AG--IRQAFREGKVASLIGVEGGHS 145 A + G++ L+ +G H Sbjct: 138 AEGVLLALRETGRMGVLVS-QGVHP 161 >4DZI-A nrPDB Length = 423 Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 283 VADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGAL 342 D L + V G + FG D+ + + AEL + ++E++++ + Sbjct: 335 YEDDLPELARVIGVDKILFGSDWPHGEGLASPV-------SFTAEL--KGFSESDIRKIM 385 Query: 343 ADNLLRVFE 351 DN L + Sbjct: 386 RDNALDLLG 394 >3IFZ-A nrPDB Length = 508 Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 28/199 (14%) Query: 69 PKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMC-RMYPETFLYVTSSAGIRQ 127 +++ ++ + + +D ++ V R+ M+ F S A + Sbjct: 22 QEMQRSYIDYAMSVIVGRALPEVRDGLK------PVHRRVLYAMFDSGFRPDRSHAKSAR 75 Query: 128 AFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADN--WLVDTGDS 185 + E + H + ++Y +R S P D G+ Sbjct: 76 SVAE-------TMGNYHPHGDA-----SIYDSLVRMAQP-WSLRYPLVDGQGNFGSPGND 122 Query: 186 EPQS-----QGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYS 240 P + L+P +++E++ V + + + T+ SR P + ++ S Sbjct: 123 PPAAMRYTEARLTPLAMEMLREIDEETVDF-IPNYDGRVQEPTVLPSRFPNLLANGSGGI 181 Query: 241 VCASRRNVPDDVLRLVKQT 259 N+P LR + Sbjct: 182 AVGMATNIPPHNLRELADA 200 >5ANZ-A nrPDB Length = 420 Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 298 AVGFGGD-FDGVPRVPEGL--EDV----SKYPDLIAELLRRNWTEAEVKGALADNLLRVF 350 AVG D F G R+ EDV S+ +L +L R V G + N + Sbjct: 335 AVGLLADSFKGGGRIVGAWPLEDVPLSRSQRIELQRQLAARGHDPGAVDGIIGANTRKAI 394 Query: 351 EAVEQASNLTQAPEEEPIPLDQL 373 A +Q P LD+L Sbjct: 395 RACQQEFGWPADGYPTPALLDRL 417 >3MKV-A nrPDB Length = 426 Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 26/142 (18%) Query: 180 VDTGDSEPQSQGLSPFG-QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSA 238 V + G S + +V E G + LAH ++RA Sbjct: 200 VASPTDPVGVFGYSEDEIRAIVAEAQGRGTYV-LAHAYTPA-----AIARA----VRCGV 249 Query: 239 YSVCASRRNVPDDVLRLVKQTDSLVMVNF--YNNYISCTNK-----------ANLSQVAD 285 ++ + D+ RLV + + V+ Y+ S K A++ Sbjct: 250 RTI-EHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGL 308 Query: 286 HLDHIKEVAGARAVGFGGDFDG 307 H I + AG + +GFG D G Sbjct: 309 HSIEIMKRAGVK-MGFGTDLLG 329 >6FV3-A nrPDB Length = 401 Score = 30.1 bits (66), Expect = 1.9, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 73/250 (29%), Gaps = 27/250 (10%) Query: 75 FVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKV 134 GG +S T +T A+ R +V + PE L +G+ + R G + Sbjct: 75 GGGGGNFSAATDDETARAVALHRAHGSTTLVASLVTAGPEDLL--RQVSGLARQVRAGLI 132 Query: 135 ASLIGVEGGHSIDSSLGVLRALYQLGMRYLTL---THSCNTPWADNWLVDTGDSEPQSQG 191 I +EG L LR + + + + + Sbjct: 133 DG-IHLEGPW-----LSTLRCGAHQPVLMRDPDPGEIGRVLDAGEGTVRMVTIAPERDGA 186 Query: 192 LSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDD 251 L+ + +L GV+ + H AT T A ++ R P Sbjct: 187 LAA-----IAQLVNAGVVAAVGHT-EATYDQTRAAIDAGATVGTHLFNAMRPIDRREPGP 240 Query: 252 VLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRV 311 + L + + V + +++ HI + G + D + Sbjct: 241 AVALTEDSRVTVEMIVDGVHVAPAIYR----------HITQTVGPERLSLITDAMAATGM 290 Query: 312 PEGLEDVSKY 321 +G+ + Sbjct: 291 SDGVYRLGPL 300 >3UW3-A nrPDB Length = 377 Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 14/92 (15%) Query: 25 RIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTL------AGTHTNIPKLRAGFVGG 78 ++ +D P+ D N + D + A++ L + +LR +GG Sbjct: 289 KLKKDVPL-DEINGILASANDWVKVVPNEREASMRDLSPAKVTGTLSVPVGRLRKLAMGG 347 Query: 79 QFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCR 110 ++ S +T D A + + RM R Sbjct: 348 EYLSAFTVGDQLLWGAA-------EPLRRMLR 372 >4C50-A nrPDB Length = 740 Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 358 NLTQAPEEEPIPLDQLGGSCRTHYGYSSGASSL 390 PE E PL+Q+G ++ YG +G ++ Sbjct: 281 ADLVGPEPEAAPLEQMGLGWKSSYGTGTGKDAI 313 >6HZK-A nrPDB Length = 333 Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 5/113 (4%) Query: 103 DVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVL-RALYQL-- 159 ++R+ ++ + V R+G+ + GV ++ ++ + L Sbjct: 22 TFLNRLADLFGTELMTVICLDDYHSLDRKGRKEA--GVTALDPRANNFDLMYEQVKALKN 79 Query: 160 GMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDL 212 G + ++ T D + +GL P V+EL V +D+ Sbjct: 80 GETIMKPIYNHETGLIDPPEKIEPNRIIVIEGLHPLYDERVRELLDFSVYLDI 132 >1NX9-A nrPDB Length = 652 Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 16/136 (11%) Query: 29 DSPVIDGHNDLPWQLLDMFNNRLQDERANLT-----TLAGTHTNIPKLRAGFVGGQFWSV 83 +SP++DG W D F+ + A T G +IP+ ++ Sbjct: 188 ESPMVDG-----WMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRR-----DADDYTN 237 Query: 84 YTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGG 143 + + A + L+Q RM +P + A + + ++ +G Sbjct: 238 FLKAGSAGSFATQAGLDQYPFWQRM-HAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGL 296 Query: 144 HSIDSSLGVLRALYQL 159 + G + A L Sbjct: 297 WDQEDMWGAIHAWQAL 312 >4QAI-A nrPDB Length = 407 Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 283 VADHLDHIKEVAGARAVGFG----GDFDGVPRVPEGLEDVSKYPDLIAELLRR 331 + + +DH+ + GA +G F + + + ++ + L+ EL +R Sbjct: 221 ILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQR 273 >1NNE-A nrPDB Length = 765 Score = 27.7 bits (60), Expect = 9.6, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 86 PCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGG-- 143 ++ A+RR+L+ + + + + A E L EGG Sbjct: 343 RASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVED--PPLKVSEGGLI 400 Query: 144 -HSIDSSLGVLRALYQLGMRYL 164 D L LRA ++ G+ Y Sbjct: 401 REGYDPDLDALRAAHREGVAYF 422 >4UOQ-A nrPDB Length = 695 Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 12/116 (10%) Query: 198 RVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLVK 257 GV D+ + T P ++ S + + LR Sbjct: 447 DWFAAFANRGVTADVTPIH--AQWDTYDAVVIPCVYLFSEEMA----------ERLRTFV 494 Query: 258 QTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPE 313 + V +Y+ ++ + + + V G F G+ + Sbjct: 495 RNGGKAFVTYYSALADEHDRLHTEGWPGLIGDVVGVRIEEHCPLGTLFPGMLDHLD 550 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.132 0.345 Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,976,764 Number of Sequences: 36641 Number of extensions: 571223 Number of successful extensions: 1893 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 1831 Number of HSP's gapped (non-prelim): 45 length of query: 411 length of database: 10,336,785 effective HSP length: 99 effective length of query: 312 effective length of database: 6,709,326 effective search space: 2093309712 effective search space used: 2093309712 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 60 (27.7 bits)