BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P16083 (231 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5LBT-A nrPDB 485 e-138 1QRD-A nrPDB 228 2e-60 1DXQ-A nrPDB 224 2e-59 5A4K-A nrPDB 213 8e-56 4F8Y-A nrPDB 77 7e-15 3L9X-A nrPDB 73 1e-13 4N9Q-A nrPDB 48 4e-06 4C0X-A nrPDB 43 1e-04 2B3D-A nrPDB 42 2e-04 4ESE-A nrPDB 42 2e-04 3W78-A nrPDB 40 6e-04 2Z98-A nrPDB 38 0.003 1T5B-A nrPDB 37 0.005 3W77-A nrPDB 37 0.006 2HPV-A nrPDB 36 0.011 6DXP-A nrPDB 35 0.021 4M0C-A nrPDB 35 0.028 4V68-BC nrPDB 32 0.30 5UQ8-C nrPDB 30 1.2 6DRY-A nrPDB 30 1.2 3KLB-A nrPDB 30 1.2 4DIK-A nrPDB 29 1.8 3SVL-A nrPDB 29 2.1 6CT0-0 nrPDB 28 3.1 3B8K-A nrPDB 28 3.2 3ZM8-A nrPDB 28 4.0 4YUU-V1 nrPDB 28 4.4 1P5U-C nrPDB 28 4.8 5HK8-A nrPDB 27 5.6 5XNE-B nrPDB 27 8.8 2Y0K-A nrPDB 27 9.0 >5LBT-A nrPDB Length = 237 Score = 485 bits (1248), Expect = e-138, Method: Compositional matrix adjust. Identities = 231/231 (100%), Positives = 231/231 (100%) Query: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60 Query: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV Sbjct: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180 Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ 231 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ Sbjct: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ 231 >1QRD-A nrPDB Length = 273 Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/220 (50%), Positives = 142/220 (64%) Query: 2 AGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLS 61 A ++ LIV AH E SFN ++K AV+ L ++G V SDLYAMN P + DITG Sbjct: 1 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 60 Query: 62 NPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 121 + E F Y VE+ AYK+ L+ DI EQKK+ ADLVIFQFPLYWF VPAILKGW +RVL Sbjct: 61 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 120 Query: 122 CQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCG 181 GFA+ YD G Q K LLS+TTGG+ MY+ GV+GD LWP+Q G L FCG Sbjct: 121 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 180 Query: 182 FKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221 F+VL PQ+ ++ + R ++ W +RL+T+W+E P+ Sbjct: 181 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPL 220 >1DXQ-A nrPDB Length = 273 Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 107/220 (48%), Positives = 141/220 (64%) Query: 2 AGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLS 61 A ++ LIV AH E SFN ++K AV+ L ++G V SDLYAMN P + DITG L Sbjct: 1 AARRALIVLAHSEKTSFNYAMKEAAVEALKKRGWEVLESDLYAMNFNPIISRNDITGELK 60 Query: 62 NPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 121 + + F Y E+ AYK+ L+ DI E KK+ ADLVIFQFPL WF VPAILKGW +RVL Sbjct: 61 DSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERVL 120 Query: 122 CQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCG 181 GFA+ YD+G Q K LLS+TTGG+ MY+ GV+GD LWP+Q G L FCG Sbjct: 121 VAGFAYTYAAMYDNGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 180 Query: 182 FKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221 F+VL PQ+ ++ + R ++ W +RL+T+W+E P+ Sbjct: 181 FQVLEPQLVYSIGHTPPDARMQILEGWKKRLETVWEETPL 220 >5A4K-A nrPDB Length = 294 Score = 213 bits (541), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 107/221 (48%), Positives = 139/221 (62%) Query: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60 M G++ LIV AH E SFN ++K A L ++G V SDLYAMN P + KDITG L Sbjct: 21 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 80 Query: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 +P F Y E+ AYK+ L+ DI EQKK+ ADLVIFQFPL WF VPAILKGW +RV Sbjct: 81 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 140 Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180 FA+ YD G K A+LS+TTGG+ MY+ G++GD LWP+Q G LHFC Sbjct: 141 FIGEFAYTYAAMYDKGPFWSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 200 Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221 GF+VL PQ++++ + R ++ W +RL+ IW E P+ Sbjct: 201 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPL 241 >4F8Y-A nrPDB Length = 196 Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 27/152 (17%) Query: 5 KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPE 64 K+LIVY H P SFN + LS++ TV+ DLYA + +P Sbjct: 2 KILIVYTHPNPTSFNAEILKQVQTNLSKEH-TVSTLDLYAEHFDP--------------- 45 Query: 65 VFNYGVETHEAYKQRSLASDITDEQKKVRE----ADLVIFQFPLYWFSVPAILKGWMDRV 120 ++ +E +K+R LA E +K R+ AD +IF FP++W +PAILKG++DRV Sbjct: 46 ----VLQFNETHKRRDLAK--VAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRV 99 Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 152 FA+ G LQGK A + +TT T Sbjct: 100 FVADFAYSYKKVGLEGHLQGKSAWI-ITTHNT 130 >3L9X-A nrPDB Length = 413 Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 7/135 (5%) Query: 84 DITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLA 143 DI EQ+ + ADL+++Q P+ W+S+P +LK W+D+V G+A+ G L GK Sbjct: 282 DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGT----ALHGKHL 337 Query: 144 LLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKG 203 L +VTTGG E + + G + PLQ T +CG L P I +E +G Sbjct: 338 LWAVTTGG-GESHFEIGAHPGFDVLSQPLQ-ATAIYCGLNWLPPFAMHCTFICDDETLEG 395 Query: 204 MVAAWSQRLQTIWKE 218 + QRL W+E Sbjct: 396 QARHYKQRLLE-WQE 409 >4N9Q-A nrPDB Length = 212 Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 13/84 (15%) Query: 73 HEAYKQRSLA--SDITDEQKKVRE---ADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAF 127 H +QRSLA +D+ + V E +DL++ P+Y FSVP+ LK W+D+++ G F Sbjct: 61 HPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTF 120 Query: 128 DIPGFYDSG------LLQGKLALL 145 D D+G LL+GK AL+ Sbjct: 121 DF--VLDNGVAQYRPLLRGKRALI 142 >4C0X-A nrPDB Length = 203 Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 28/57 (49%) Query: 95 ADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 151 AD V+ P+Y F+VP LK W+DRV G F GL K +L T GG Sbjct: 86 ADAVVIGAPMYNFTVPTQLKAWIDRVAVAGKTFRYTEAGPQGLCGNKKVVLVSTAGG 142 >2B3D-A nrPDB Length = 204 Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 25/144 (17%) Query: 84 DITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQG----FAFD-------IPGF 132 D+ E + AD+VI+Q P +W P +K ++D V +G +A D + Sbjct: 60 DVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKY 119 Query: 133 YDSGLLQGKLALLSVTTGGTAEMYTKT-----GVNGDSRYFLWPLQHGTLHFCGFKVL-- 185 GL+QGK +LS+T E +T+ GV D Y P H F G + L Sbjct: 120 GSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYL--PF-HKANQFLGMEPLPT 176 Query: 186 --APQISFAPEIA--SEEERKGMV 205 A + P++ +EE RK +V Sbjct: 177 FIANDVIKMPDVPRYTEEYRKHLV 200 >4ESE-A nrPDB Length = 204 Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 77 KQRSLASDITDEQ-KKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDS 135 +Q +LA ++DE +++ D+++ P+Y F++P LK + D + G F Sbjct: 73 QQEALA--LSDELIAELQANDVIVIAAPMYNFNIPTQLKNYFDMIARAGVTFRYTEKGPE 130 Query: 136 GLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEI 195 GL+ GK A++ + GG + V R FL + + F V A I++ PE+ Sbjct: 131 GLVTGKRAIILTSRGGIHKDTPTDLVVPYLRLFLGFIGITDVEF----VFAEGIAYGPEV 186 Query: 196 ASEEE 200 A++ + Sbjct: 187 ATKAQ 191 >3W78-A nrPDB Length = 211 Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 69 GVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFD 128 G E +Q+ +A+ T+ + AD +F P++ FS P ++K ++D V G F Sbjct: 68 GFEALTEVQQQKVAAMNTNLET-FMNADRYVFVTPMWNFSYPPVVKAYLDNVAIAGKTFK 126 Query: 129 IPGFYDSGLLQGKLALLSVTTGG 151 GLL+GK AL TGG Sbjct: 127 YTENGPVGLLEGKKALHIQATGG 149 >2Z98-A nrPDB Length = 200 Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 15/135 (11%) Query: 77 KQRSLASDITDEQ-KKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDS 135 +Q +LA ++DE +++ D+++ P+Y F++ LK + D V G F Sbjct: 69 QQEALA--LSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPE 126 Query: 136 GLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFK----VLAPQISF 191 GL+ GK A++ + GG + +G + + P L F G V A I++ Sbjct: 127 GLVTGKKAIVITSRGGIHK-------DGPTD-LVTPYLSTFLGFIGITDVKFVFAEGIAY 178 Query: 192 APEIASEEERKGMVA 206 PE+A++ + A Sbjct: 179 GPEMAAKAQSDAKAA 193 >1T5B-A nrPDB Length = 201 Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 15/124 (12%) Query: 77 KQRSLASDITDEQ-KKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDS 135 +Q +LA ++DE +++ D+++ P+Y F++P LK + D + G F Sbjct: 70 QQDALA--LSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPE 127 Query: 136 GLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFK----VLAPQISF 191 GL+ GK A++ + GG ++ T + + P L F G V A I++ Sbjct: 128 GLVTGKRAVVLSSRGG---IHKDTPTD-----LIAPYLKVFLGFIGITDVNFVFAEGIAY 179 Query: 192 APEI 195 PE+ Sbjct: 180 GPEV 183 >3W77-A nrPDB Length = 208 Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 8/120 (6%) Query: 36 TVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREA 95 TV DLY L D I GT + F+ T E K ++A ++ EA Sbjct: 38 TVVELDLYKEELPYVGVDM-INGTFKAGKGFDL---TEEEAKAVAVADKYLNQ---FLEA 90 Query: 96 DLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLL-QGKLALLSVTTGGTAE 154 D V+F FPL+ ++PA+L ++D + G F GL+ K+ALL+ G +E Sbjct: 91 DKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSE 150 >2HPV-A nrPDB Length = 208 Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 16/156 (10%) Query: 5 KVLIVYAH----QEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDIT--- 57 K+L+V AH +E +S +A + + + D+YA D+++ Sbjct: 3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAW 62 Query: 58 GTLSNPEVFNYGVETHEAYKQRSLA--SDITDEQKKVREADLVIFQFPLYWFSVPAILKG 115 G L F ET +Q+ +A +++TD+ AD V+ P++ +VP LK Sbjct: 63 GALRAGAAF----ETLSENQQQKVARFNELTDQ---FLSADKVVIANPMWNLNVPTRLKA 115 Query: 116 WMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 151 W+D + G F L GK AL + GG Sbjct: 116 WVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGG 151 >6DXP-A nrPDB Length = 223 Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 16 KSFNG--SLKNVAVDEL--SRQ----GCTVTVSDLYAMNLEPRATDKDITGTLSNP--EV 65 S NG SL N ++E +RQ G + DL AM L TL P Sbjct: 31 SSINGETSLTNQLINEFLAARQAAGHGDRLIEHDLSAMALP----------TLDRPLFAA 80 Query: 66 FNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGF 125 V+ A ++ SD +++ +DL++ P+Y +VP LK W D V Sbjct: 81 LRGAVDPQPAIREAVALSD--QLIAELKASDLLVIGAPMYNLNVPTDLKKWFDLVARARE 138 Query: 126 AFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGV 161 F + GL++G A++ + GG + T V Sbjct: 139 TFRYTESWPQGLVEGVRAVVVSSRGGIHQGETTDAV 174 >4M0C-A nrPDB Length = 223 Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 12/89 (13%) Query: 75 AYKQRSLASDITDEQKKVRE-----------ADLVIFQFPLYWFSVPAILKGWMDRVLCQ 123 A++++ ++T E++KV E A+ + PL+ F++P+ LK +MD ++ Sbjct: 64 AWEKQGNGQELTREEQKVTERMSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIA 123 Query: 124 GFAFDIPGFYDSGLLQ-GKLALLSVTTGG 151 F GLL+ G+ L+ +GG Sbjct: 124 RETFKYTETGSVGLLKDGRRMLVIQASGG 152 >4V68-BC nrPDB Length = 191 Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 14/97 (14%) Query: 27 VDELSRQGCTVTVSDLYA-MNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQ-RSLASD 84 +DE +R +++A + ++PR +D+++ GT+S P H KQ R LA Sbjct: 5 IDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLP---------HGLGKQVRVLA-- 53 Query: 85 ITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 121 + +K++EA+ + + IL GWMD V+ Sbjct: 54 -IAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFVM 89 >5UQ8-C nrPDB Length = 226 Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 13/93 (13%) Query: 27 VDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQ-RSLASDI 85 V EL+ TV + ++PR +D+++ GT+S P H KQ R LA Sbjct: 28 VKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLP---------HGLGKQVRVLA--- 75 Query: 86 TDEQKKVREADLVIFQFPLYWFSVPAILKGWMD 118 + +K++EA+ + + IL GWMD Sbjct: 76 IAKGEKIKEAEEAGADYVGGEEIIQKILDGWMD 108 >6DRY-A nrPDB Length = 411 Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 72 THEAYKQRSLASDITDEQKKVREADLVIFQFPLYW 106 T AY Q+ L I++EQ+ + +V F F L W Sbjct: 310 TRNAYIQKYLVQTISNEQRASKVLGIVFFLFLLMW 344 >3KLB-A nrPDB Length = 162 Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 33/153 (21%) Query: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60 M +K+L+ Y S +G K VA + +T +DLY + E T+ D+ Sbjct: 2 MNDRKILVAYF-----SCSGVTKAVA-----EKLAAITGADLYEIKPEVPYTEADLDW-- 49 Query: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 N + VE +A + +++ + +K +++ FP++W+ P I+ +++ Sbjct: 50 -NDKKSRSSVEMRDALSRPAISGTLFHPEK----YEVLFVGFPVWWYIAPTIINTFLES- 103 Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTA 153 YD GK+ + T+GG+ Sbjct: 104 ------------YD---FAGKIVVPFATSGGSG 121 >4DIK-A nrPDB Length = 410 Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 5 KVLIVYAHQEPKSFNGSLKNV---AVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLS 61 KV ++Y S G ++NV A+D L +G T V Y + E R +I + Sbjct: 267 KVTVIY-----DSMYGFVENVMKKAIDSLKEKGFTPVV---YKFSDEERPAISEILKDIP 318 Query: 62 NPEVFNYGVETHEA 75 + E +GV T+EA Sbjct: 319 DSEALIFGVSTYEA 332 >3SVL-A nrPDB Length = 193 Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Query: 90 KKVREADLVIFQFPLYWFSVPAILKG---WMDRVLCQGFA 126 +++R+AD V+ P Y +SVP LK W+ R+ Q A Sbjct: 68 EQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLA 107 >6CT0-0 nrPDB Length = 647 Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 24/64 (37%) Query: 66 FNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGF 125 + V E R + I + + K+ D +I L VP WMD V+ Q Sbjct: 448 LSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNH 507 Query: 126 AFDI 129 D+ Sbjct: 508 VVDV 511 >3B8K-A nrPDB Length = 239 Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 24/64 (37%) Query: 66 FNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGF 125 + V E R + I + + K+ D +I L VP WMD V+ Q Sbjct: 40 LSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNH 99 Query: 126 AFDI 129 D+ Sbjct: 100 VVDV 103 >3ZM8-A nrPDB Length = 475 Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 50 RATDKDITGTLSNPEVFNY 68 RATD DI TL+NP+ NY Sbjct: 254 RATDFDIAATLANPQGANY 272 >4YUU-V1 nrPDB Length = 155 Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 26/122 (21%) Query: 1 MAGKKVLIVYAHQE-----PKSFNGSLKNVAVDELSR--------------QGCTVTVS- 40 M G VL ++AHQ K NG + N+A ++L R G T T Sbjct: 5 MIGWLVLFLFAHQTWAIEVAKDTNGGILNIAPEQLKRGKRLFNSHCSSCHVGGITKTNPN 64 Query: 41 ---DLYAMNLE--PRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREA 95 DL +++L PR + + NP ++ G E+ +SDI + + + E Sbjct: 65 IGLDLESLSLATPPRNNLDALVDYMKNPTTYD-GSESIAQIHPSIASSDIFPKMRDLSED 123 Query: 96 DL 97 DL Sbjct: 124 DL 125 >1P5U-C nrPDB Length = 147 Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 131 GFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAP--- 187 G D+ LL G L L TG T+ T GD Y + Q G H KV+ Sbjct: 33 GNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSR 92 Query: 188 QISFAPEIASEE 199 +P++ E Sbjct: 93 DFDISPKVNGEN 104 >5HK8-A nrPDB Length = 298 Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Query: 50 RATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQ 101 TDK TG L PE H Y Q L D+T K +R A + FQ Sbjct: 178 EGTDKPPTGVLMKPEFIR-----HYYYSQSPL-EDVTLSSKLLRPAPMRAFQ 223 >5XNE-B nrPDB Length = 235 Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 33 QGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEA 75 + CTVT+S MNL T L NP+ F +ET E Sbjct: 193 EDCTVTISQKMNMNLRLPNTADFFNANLDNPD-FAKDIETTEG 234 >2Y0K-A nrPDB Length = 390 Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 22/48 (45%) Query: 148 TTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEI 195 + GG+ + Y K G+ +R L+ G LHF V A PE+ Sbjct: 87 SAGGSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPEL 134 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5LBT-A nrPDB 352 7e-98 1QRD-A nrPDB 337 3e-93 1DXQ-A nrPDB 336 5e-93 5A4K-A nrPDB 314 2e-86 3L9X-A nrPDB 163 6e-41 4F8Y-A nrPDB 152 1e-37 4ESE-A nrPDB 132 8e-32 2B3D-A nrPDB 116 7e-27 3W78-A nrPDB 114 3e-26 4C0X-A nrPDB 106 8e-24 4N9Q-A nrPDB 77 6e-15 Sequences not found previously or not previously below threshold: 1T5B-A nrPDB 122 1e-28 2Z98-A nrPDB 121 4e-28 6DXP-A nrPDB 91 5e-19 2HPV-A nrPDB 82 2e-16 3W77-A nrPDB 79 1e-15 4M0C-A nrPDB 66 2e-11 3SVL-A nrPDB 44 6e-05 1T0I-A nrPDB 36 0.013 1X77-A nrPDB 35 0.024 4ICI-A nrPDB 34 0.048 3KLB-A nrPDB 32 0.15 5MP4-A nrPDB 31 0.37 4C76-A nrPDB 31 0.66 3JBU-E nrPDB 30 0.91 3B6J-A nrPDB 30 1.0 4LTN-A nrPDB 30 1.1 3R0Q-C nrPDB 30 1.1 6DQP-A nrPDB 29 1.6 4J8P-A nrPDB 29 2.0 3QKW-A nrPDB 29 2.2 3RU8-X nrPDB 28 3.3 1WCG-A nrPDB 28 3.4 2WEK-A nrPDB 28 3.8 4AOY-A nrPDB 27 6.0 3ZQ6-A nrPDB 27 6.3 1YRH-A nrPDB 27 7.2 >5LBT-A nrPDB Length = 237 Score = 352 bits (903), Expect = 7e-98, Method: Composition-based stats. Identities = 231/231 (100%), Positives = 231/231 (100%) Query: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60 Query: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV Sbjct: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180 Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ 231 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ Sbjct: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ 231 >1QRD-A nrPDB Length = 273 Score = 337 bits (863), Expect = 3e-93, Method: Composition-based stats. Identities = 110/220 (50%), Positives = 142/220 (64%) Query: 2 AGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLS 61 A ++ LIV AH E SFN ++K AV+ L ++G V SDLYAMN P + DITG Sbjct: 1 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 60 Query: 62 NPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 121 + E F Y VE+ AYK+ L+ DI EQKK+ ADLVIFQFPLYWF VPAILKGW +RVL Sbjct: 61 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 120 Query: 122 CQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCG 181 GFA+ YD G Q K LLS+TTGG+ MY+ GV+GD LWP+Q G L FCG Sbjct: 121 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 180 Query: 182 FKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221 F+VL PQ+ ++ + R ++ W +RL+T+W+E P+ Sbjct: 181 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPL 220 >1DXQ-A nrPDB Length = 273 Score = 336 bits (861), Expect = 5e-93, Method: Composition-based stats. Identities = 107/220 (48%), Positives = 141/220 (64%) Query: 2 AGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLS 61 A ++ LIV AH E SFN ++K AV+ L ++G V SDLYAMN P + DITG L Sbjct: 1 AARRALIVLAHSEKTSFNYAMKEAAVEALKKRGWEVLESDLYAMNFNPIISRNDITGELK 60 Query: 62 NPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 121 + + F Y E+ AYK+ L+ DI E KK+ ADLVIFQFPL WF VPAILKGW +RVL Sbjct: 61 DSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERVL 120 Query: 122 CQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCG 181 GFA+ YD+G Q K LLS+TTGG+ MY+ GV+GD LWP+Q G L FCG Sbjct: 121 VAGFAYTYAAMYDNGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 180 Query: 182 FKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221 F+VL PQ+ ++ + R ++ W +RL+T+W+E P+ Sbjct: 181 FQVLEPQLVYSIGHTPPDARMQILEGWKKRLETVWEETPL 220 >5A4K-A nrPDB Length = 294 Score = 314 bits (805), Expect = 2e-86, Method: Composition-based stats. Identities = 107/221 (48%), Positives = 139/221 (62%) Query: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60 M G++ LIV AH E SFN ++K A L ++G V SDLYAMN P + KDITG L Sbjct: 21 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 80 Query: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 +P F Y E+ AYK+ L+ DI EQKK+ ADLVIFQFPL WF VPAILKGW +RV Sbjct: 81 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 140 Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180 FA+ YD G K A+LS+TTGG+ MY+ G++GD LWP+Q G LHFC Sbjct: 141 FIGEFAYTYAAMYDKGPFWSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 200 Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221 GF+VL PQ++++ + R ++ W +RL+ IW E P+ Sbjct: 201 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPL 241 >3L9X-A nrPDB Length = 413 Score = 163 bits (412), Expect = 6e-41, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 7/135 (5%) Query: 84 DITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLA 143 DI EQ+ + ADL+++Q P+ W+S+P +LK W+D+V G+A+ G L GK Sbjct: 282 DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGT----ALHGKHL 337 Query: 144 LLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKG 203 L +VTTGG E + + G + PLQ T +CG L P I +E +G Sbjct: 338 LWAVTTGG-GESHFEIGAHPGFDVLSQPLQ-ATAIYCGLNWLPPFAMHCTFICDDETLEG 395 Query: 204 MVAAWSQRLQTIWKE 218 + QRL W+E Sbjct: 396 QARHYKQRLLE-WQE 409 >4F8Y-A nrPDB Length = 196 Score = 152 bits (384), Expect = 1e-37, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 32/217 (14%) Query: 5 KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPE 64 K+LIVY H P SFN + LS++ TV+ DLYA + +P Sbjct: 2 KILIVYTHPNPTSFNAEILKQVQTNLSKEH-TVSTLDLYAEHFDPV-------------- 46 Query: 65 VFNYGVETHEAYKQRSLASDITDEQKKVR----EADLVIFQFPLYWFSVPAILKGWMDRV 120 ++ +E +K+R LA E +K R AD +IF FP++W +PAILKG++DRV Sbjct: 47 -----LQFNETHKRRDLAK--VAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRV 99 Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180 FA+ G LQGK A + T + V + + L C Sbjct: 100 FVADFAYSYKKVGLEGHLQGKSAWIITTHNTP--SFAMPFVQDYGKVL----KKQILKPC 153 Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 217 + + E S++ER+ ++ +Q + I + Sbjct: 154 AISPVKLTELTSIEKISDDERQKLLHKVAQITRNILE 190 >4ESE-A nrPDB Length = 204 Score = 132 bits (333), Expect = 8e-32, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 15/168 (8%) Query: 34 GCTVTVSDLYAMNLEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKV 92 G +TV DL A +P D ++ G L T +Q+ + + ++ Sbjct: 38 GDQITVRDLAA---QPIPVLDGELVGALR-------PSGTALTPRQQEALALSDELIAEL 87 Query: 93 READLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 152 + D+++ P+Y F++P LK + D + G F GL+ GK A++ + GG Sbjct: 88 QANDVIVIAAPMYNFNIPTQLKNYFDMIARAGVTFRYTEKGPEGLVTGKRAIILTSRGGI 147 Query: 153 AEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEE 200 + V R FL + + F V A I++ PE+A++ + Sbjct: 148 HKDTPTDLVVPYLRLFLGFIGITDVEF----VFAEGIAYGPEVATKAQ 191 >1T5B-A nrPDB Length = 201 Score = 122 bits (305), Expect = 1e-28, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 17/182 (9%) Query: 17 SFNGSLKNVAVDELSRQGC--TVTVSDLYAMNLEPR-ATDKDITGTLSNPEVFNYGVETH 73 S +G L + +++ + +TV DL A P D ++ G + + Sbjct: 16 SQSGQLTDYFIEQWREKHVADEITVRDLAA---NPVPVLDGELVGAMR-------PGDAP 65 Query: 74 EAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFY 133 +Q+ + + +++ D+++ P+Y F++P LK + D + G F Sbjct: 66 LTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKG 125 Query: 134 DSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAP 193 GL+ GK A++ + GG + + + FL + ++F V A I++ P Sbjct: 126 PEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNF----VFAEGIAYGP 181 Query: 194 EI 195 E+ Sbjct: 182 EV 183 >2Z98-A nrPDB Length = 200 Score = 121 bits (302), Expect = 4e-28, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 15/166 (9%) Query: 36 TVTVSDLYAMNLEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVRE 94 +TV DL A P D ++ G L + +Q+ + + +++ Sbjct: 36 EITVRDLAA---NPIPVLDGELVGALR-------PSDAPLTPRQQEALALSDELIAELKA 85 Query: 95 ADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAE 154 D+++ P+Y F++ LK + D V G F GL+ GK A++ + GG + Sbjct: 86 HDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHK 145 Query: 155 MYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEE 200 V FL + + F V A I++ PE+A++ + Sbjct: 146 DGPTDLVTPYLSTFLGFIGITDVKF----VFAEGIAYGPEMAAKAQ 187 >2B3D-A nrPDB Length = 204 Score = 116 bits (291), Expect = 7e-27, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 25/145 (17%) Query: 84 DITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDI-----------PGF 132 D+ E + AD+VI+Q P +W P +K ++D V +G + Sbjct: 60 DVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKY 119 Query: 133 YDSGLLQGKLALLSVTTGGTAEMYTKT-----GVNGDSRYFLWPLQHGTLHFCGFKVLA- 186 GL+QGK +LS+T E +T+ GV D Y P H F G + L Sbjct: 120 GSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYL--PF-HKANQFLGMEPLPT 176 Query: 187 ---PQISFAPEIA--SEEERKGMVA 206 + P++ +EE RK +V Sbjct: 177 FIANDVIKMPDVPRYTEEYRKHLVE 201 >3W78-A nrPDB Length = 211 Score = 114 bits (285), Expect = 3e-26, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 14/208 (6%) Query: 5 KVLIVYAHQEPK--SFNGSLKNVAVDELSRQGC--TVTVSDLYAMNLEPRATDKDITGTL 60 KVL + A+ SF ++ ++ + V DL+ N A D D+ Sbjct: 3 KVLFITANPNSAEGSFGMAVGEAFIEAYKNEHPQDEVVTIDLF--NTTVPAIDADVFAAW 60 Query: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 G E +Q+ +A+ T+ + AD +F P++ FS P ++K ++D V Sbjct: 61 GKFAAGE-GFEALTEVQQQKVAAMNTNLET-FMNADRYVFVTPMWNFSYPPVVKAYLDNV 118 Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYF---LWPLQHGTL 177 G F GLL+GK AL TGG V+ + L + Sbjct: 119 AIAGKTFKYTENGPVGLLEGKKALHIQATGGVYSEGAYAAVDFGRNHLKTVLGFVGVNDT 178 Query: 178 HFC---GFKVLAPQISFAPEIASEEERK 202 + G + E A R+ Sbjct: 179 EYIAVEGMNANPEKAQEIKEAAIANARE 206 >4C0X-A nrPDB Length = 203 Score = 106 bits (264), Expect = 8e-24, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 79 RSLASDITDE-QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGL 137 ++ + ++ E ++ AD V+ P+Y F+VP LK W+DRV G F GL Sbjct: 69 QAFEAKLSAETLEEFLAADAVVIGAPMYNFTVPTQLKAWIDRVAVAGKTFRYTEAGPQGL 128 Query: 138 LQGKLALLSVTTGGTAEMYTKTGVNGDS-RYFLWPLQHGTLHFCGFKVLAPQISFAPE 194 K +L T GG + D + FL + L V A +++ PE Sbjct: 129 CGNKKVVLVSTAGGLHAGQPTGAGHEDFLKVFLGFIGITDLEI----VRAHGLAYGPE 182 >6DXP-A nrPDB Length = 223 Score = 90.6 bits (223), Expect = 5e-19, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 13/182 (7%) Query: 26 AVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQR-SLASD 84 A + + G + DL AM L P V+ A ++ +L+ Sbjct: 49 AARQAAGHGDRLIEHDLSAMAL-PTLDRPLF-------AALRGAVDPQPAIREAVALSDQ 100 Query: 85 ITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLAL 144 + E ++ +DL++ P+Y +VP LK W D V F + GL++G A+ Sbjct: 101 LIAE---LKASDLLVIGAPMYNLNVPTDLKKWFDLVARARETFRYTESWPQGLVEGVRAV 157 Query: 145 LSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGM 204 + + GG + T V R L + + F + L + + R + Sbjct: 158 VVSSRGGIHQGETTDAVTPYLRAVLGLMGIQEVEFIYAEGLDNR-PHGRDAGIASARAQI 216 Query: 205 VA 206 Sbjct: 217 AR 218 >2HPV-A nrPDB Length = 208 Score = 81.8 bits (200), Expect = 2e-16, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 22/205 (10%) Query: 5 KVLIVYAHQ----EPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLE-PRATDKDIT-- 57 K+L+V AH E +S +A + + + D+YA P ++ ++ Sbjct: 3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAW 62 Query: 58 GTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWM 117 G L F ET +Q+ +A + AD V+ P++ +VP LK W+ Sbjct: 63 GALRAGAAF----ETLSENQQQKVARFNELTDQ-FLSADKVVIANPMWNLNVPTRLKAWV 117 Query: 118 DRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTL 177 D + G F L GK AL + GG E + ++ L Sbjct: 118 DTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYE---------GKDFASQYIK-AIL 167 Query: 178 HFCGFKVLAPQISFAPEIASEEERK 202 +F G + + + + Sbjct: 168 NFIGVDQVDGLFIEGIDHFPDRAEE 192 >3W77-A nrPDB Length = 208 Score = 79.5 bits (194), Expect = 1e-15, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 70/209 (33%), Gaps = 16/209 (7%) Query: 6 VLIVYAHQEPKSFNGSLK--NVAVDELSRQGC--TVTVSDLYAMNLEPRATDKDITGTLS 61 VL V A+ P S+K + TV DLY L P I GT Sbjct: 4 VLFVKANNRPAEQAVSVKLYEAFLANYKEAHPNDTVVELDLYKEEL-PYVGVDMINGTFK 62 Query: 62 NPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 121 + F+ ++ + + EAD V+F FPL+ ++PA+L ++D + Sbjct: 63 AGKGFD------LTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLN 116 Query: 122 CQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCG 181 G F GL+ K L GG V +Y + F G Sbjct: 117 RAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYVASMMG-----FFG 171 Query: 182 FKVLAPQISFAPEIASEEERKGMVAAWSQ 210 + I ++ + + A + Sbjct: 172 ATNMETVIIEGHNQFPDKAEEIIAAGLEE 200 >4N9Q-A nrPDB Length = 212 Score = 77.1 bits (188), Expect = 6e-15, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 21/162 (12%) Query: 31 SRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFN--YGVETHEAYKQRSLA--SDIT 86 SR+ V ++ + + R +++ G + P V H +QRSLA +D+ Sbjct: 18 SRRLAEVFLAAYREAHPQARVARREV-GRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLA 76 Query: 87 DEQKKVRE---ADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSG------L 137 + V E +DL++ P+Y FSVP+ LK W+D+++ G FD D+G L Sbjct: 77 LSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDF--VLDNGVAQYRPL 134 Query: 138 LQGKLALLSVTT-----GGTAEMYTKTGVNGDSRYFLWPLQH 174 L+GK AL+ + G E + R L + Sbjct: 135 LRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGI 176 >4M0C-A nrPDB Length = 223 Score = 65.6 bits (158), Expect = 2e-11, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 21/200 (10%) Query: 2 AGKKVLIVYAHQ---EPKSFNGSLKNVAVDELSR---QGCTVTVSDLYAMNLEPRATDKD 55 A K LI+ AH + S + + ++ T+ +LY ++ P Sbjct: 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLY-DDVVPMIDKTV 61 Query: 56 ITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKG 115 ++ +++ + +++ ++ + A+ + PL+ F++P+ LK Sbjct: 62 LSAWEKQGNGQE------LTREEQKVTERMSEILQQFKSANTYVIVLPLHNFNIPSKLKD 115 Query: 116 WMDRVLCQGFAFDIPGFYDSGLLQ-GKLALLSVTTGG--TAEMYTKTG--VNGDSRYFLW 170 +MD ++ F GLL+ G+ L+ +GG T + + + + Sbjct: 116 YMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHKYLKAMFN 175 Query: 171 PLQHGTLHFC---GFKVLAP 187 L G VL P Sbjct: 176 FLGIEDYQIVRAQGTAVLDP 195 >3SVL-A nrPDB Length = 193 Score = 44.0 bits (102), Expect = 6e-05, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 13/156 (8%) Query: 63 PEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLC 122 P + + + + ++ + + +++R+AD V+ P Y +SVP LK +D + Sbjct: 41 PSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSR 100 Query: 123 QGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCG- 181 L GK L+ ++ G FL + F G Sbjct: 101 ----------LPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGG 150 Query: 182 --FKVLAPQISFAPEIASEEERKGMVAAWSQRLQTI 215 + PQ + + + G + A+ + +Q + Sbjct: 151 VIQNKVDPQTGEVIDQGTLDHLTGQLTAFGEFIQRV 186 >1T0I-A nrPDB Length = 191 Score = 35.9 bits (81), Expect = 0.013, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 15/115 (13%) Query: 92 VREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 151 V D+++F P Y + PA LK +DR+ + GK AL+ G Sbjct: 82 VNALDIIVFVTPQYNWGYPAALKNAIDRLY-HEW-------------HGKPALVVSYGGH 127 Query: 152 TAEMYTKTGVNGDSRYFLWPLQHGTLHF-CGFKVLAPQISFAPEIASEEERKGMV 205 + + + G L I + +EE + + Sbjct: 128 GGSKCNDQLQEVLHGLKMNVIGGVAVKIPVGTIPLPEDIVPQLSVHNEEILQLLA 182 >1X77-A nrPDB Length = 193 Score = 35.2 bits (79), Expect = 0.024, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 90 KKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTT 149 +++R AD ++F P Y +S+ +LK +D GK A + + Sbjct: 68 EQIRAADALLFATPEYNYSMAGVLKNAID----------WASRPPEQPFSGKPAAILGAS 117 Query: 150 GG 151 G Sbjct: 118 AG 119 >4ICI-A nrPDB Length = 171 Score = 34.4 bits (77), Expect = 0.048, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 26/129 (20%) Query: 41 DLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIF 100 DLY P A + T + + + I +++ + D+V Sbjct: 41 DLY-----PIAPAQPYTSADLDWNNKR--SRSSVEMNDPKMRPAIKSKKENIGTYDVVFI 93 Query: 101 QFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTA---EMYT 157 +P++W P I+ +++ L+GK + T+GG++ Sbjct: 94 GYPIWWDLAPRIINTFIE----------------GHSLKGKTVVPFATSGGSSIGNSATV 137 Query: 158 KTGVNGDSR 166 D Sbjct: 138 LKKTYPDLN 146 >3KLB-A nrPDB Length = 162 Score = 32.5 bits (72), Expect = 0.15, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 35/171 (20%) Query: 1 MAGKKVLIVYAHQEPKSFNGS-LKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGT 59 M +K+L+ Y F+ S + ++L+ +T +DLY + E T+ D+ Sbjct: 2 MNDRKILVAY-------FSCSGVTKAVAEKLA----AITGADLYEIKPEVPYTEADLDWN 50 Query: 60 LSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDR 119 VE +A + +++ + +K +++ FP++W+ P I+ +++ Sbjct: 51 DKKSRS---SVEMRDALSRPAISGTLFHPEKY----EVLFVGFPVWWYIAPTIINTFLE- 102 Query: 120 VLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLW 170 ++D GK+ + T+GG+ + ++ +W Sbjct: 103 ------SYDFA---------GKIVVPFATSGGSGIGNCEKNLHKAYPDIVW 138 >5MP4-A nrPDB Length = 198 Score = 31.3 bits (69), Expect = 0.37, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 11/73 (15%) Query: 86 TDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLA-- 143 Q + E D +F P + + PA K + DR G + G L GK+A Sbjct: 60 IATQDTLTEYDAFLFGIPTRFGNFPAQWKAFWDRT---------GGLWAKGALHGKVAGC 110 Query: 144 LLSVTTGGTAEMY 156 +S TGG E Sbjct: 111 FVSTGTGGGNEAT 123 >4C76-A nrPDB Length = 204 Score = 30.5 bits (67), Expect = 0.66, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 23/44 (52%) Query: 77 KQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120 ++ S ++D+ + + +ADL++ P+Y S + K D V Sbjct: 78 ERDSASADLQPHLQAIEQADLLLVGSPVYRASYTGLFKHLFDLV 121 >3JBU-E nrPDB Length = 167 Score = 29.8 bits (65), Expect = 0.91, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180 G A ++P + + + +++V + GV+ SR F+ P GT Sbjct: 48 FGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIA 107 Query: 181 G 181 G Sbjct: 108 G 108 >3B6J-A nrPDB Length = 198 Score = 29.8 bits (65), Expect = 1.0, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 17/99 (17%) Query: 86 TDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALL 145 +++ + D +IF P + ++ ++ ++D+ G + SG L GKLA + Sbjct: 60 VATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQT---------GGLWASGALYGKLASV 110 Query: 146 SVTTGGTA------EMYTKTGVNGDSRYFLWPLQHGTLH 178 +TG T + P+ + Sbjct: 111 FSSTGTGGGQEQTITSTWTTLAHHGMVIV--PIGYAAQE 147 >4LTN-A nrPDB Length = 197 Score = 29.8 bits (65), Expect = 1.1, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 14/83 (16%) Query: 78 QRSLA-SDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSG 136 + L+ + + + AD +I P+Y S +LK ++D Sbjct: 52 RGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLD-------------ILPQF 98 Query: 137 LLQGKLALLSVTTGGTAEMYTKT 159 L GK AL T G A + Sbjct: 99 ALAGKAALPLATGGSPAHVLALD 121 >3R0Q-C nrPDB Length = 376 Score = 29.8 bits (65), Expect = 1.1, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 9/67 (13%) Query: 53 DKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKV-----READLVIFQFPLYWF 107 D G +++ F+ ++++ L +EQ+K DL P Sbjct: 186 RNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDL----NPQQII 241 Query: 108 SVPAILK 114 P I+K Sbjct: 242 GTPTIVK 248 >6DQP-A nrPDB Length = 190 Score = 29.0 bits (63), Expect = 1.6, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 14/71 (19%) Query: 82 ASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGK 141 + + +++++AD +I P+Y + LK +D LQGK Sbjct: 54 SPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLD-------------LLPERALQGK 100 Query: 142 LALLSVTTGGT 152 +L + TGGT Sbjct: 101 -VVLPLATGGT 110 >4J8P-A nrPDB Length = 159 Score = 29.0 bits (63), Expect = 2.0, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 19/56 (33%) Query: 71 ETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFA 126 + + + + E D + FP++W P I+ +++ G Sbjct: 56 RSSVEMSDSKSRPALYSKLGSLAEYDTIYIGFPIWWNLAPRIINTFIESGDFAGKT 111 >3QKW-A nrPDB Length = 332 Score = 28.6 bits (62), Expect = 2.2, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 52 TDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYW 106 T D+ +L E+ Y + H + L+ + +R D+VIFQ P + Sbjct: 25 TVTDVAVSLGYRELGIYCYQIHTD-SESELSKRLDGIVAGLRHGDVVIFQTPTWN 78 >3RU8-X nrPDB Length = 282 Score = 28.2 bits (61), Expect = 3.3, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 92 VREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFD 128 ++ I +PLY P I++ W+ V G A Sbjct: 97 LKNRPAYIIVYPLYSGGDPEIVQEWLRTVAYAGKALK 133 >1WCG-A nrPDB Length = 464 Score = 28.2 bits (61), Expect = 3.4, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 12/20 (60%) Query: 100 FQFPLYWFSVPAILKGWMDR 119 F P+Y P I+K W+D+ Sbjct: 255 FGHPVYKGDYPPIMKKWVDQ 274 >2WEK-A nrPDB Length = 341 Score = 27.8 bits (60), Expect = 3.8, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 14/125 (11%) Query: 34 GCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRS----LASDITDEQ 89 G + + A +P G EV G+ Y +A E Sbjct: 43 GVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAPGSFAEY 102 Query: 90 KKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTT 149 V + P VP++ ++ +L G I GL +GK L++ Sbjct: 103 TVVPAS----IATP-----VPSVKPEYL-TLLVSGTTAYISLKELGGLSEGKKVLVTAAA 152 Query: 150 GGTAE 154 GGT + Sbjct: 153 GGTGQ 157 >4AOY-A nrPDB Length = 402 Score = 27.1 bits (58), Expect = 6.0, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 96 DLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFD--IPGFYDSGLLQGKLALLSVTTGG 151 D +F+ P+ S+ +KGW + A+ GK L+ + G Sbjct: 104 DGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENG 161 >3ZQ6-A nrPDB Length = 324 Score = 27.1 bits (58), Expect = 6.3, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 22/136 (16%) Query: 2 AGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLS 61 +GKK L++ SL + E+ +T +LYA+ ++P ++ L Sbjct: 41 SGKKTLVISTDPA-----HSLSDSLEREIGHTPTKITE-NLYAVEIDPEVAMEEYQAKLQ 94 Query: 62 NPEVFNYGVETHEAYKQRSLASDI--TDEQKKV---------READLVIF-----QFPLY 105 N G+ Q +AS DE E D+VIF L Sbjct: 95 EQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLR 154 Query: 106 WFSVPAILKGWMDRVL 121 S P I+ W+ +++ Sbjct: 155 LLSFPEIMDSWVGKMI 170 >1YRH-A nrPDB Length = 211 Score = 27.1 bits (58), Expect = 7.2, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 19/102 (18%) Query: 87 DEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLS 146 + A+ ++F P + + ++ ++D + G + SG L K Sbjct: 71 ATPADLEWAEAIVFSSPTRFGGATSQMRAFID---------TLGGLWSSGKLANKTF--- 118 Query: 147 VTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQ 188 + M + VNG L L +H+ G + P Sbjct: 119 ------SAMTSAQNVNGGQETTLQTLYMTAMHW-GAVLTPPG 153 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.123 0.327 Lambda K H 0.267 0.0383 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,261,729 Number of Sequences: 36641 Number of extensions: 293270 Number of successful extensions: 871 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 809 Number of HSP's gapped (non-prelim): 70 length of query: 231 length of database: 10,336,785 effective HSP length: 94 effective length of query: 137 effective length of database: 6,892,531 effective search space: 944276747 effective search space used: 944276747 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 57 (26.7 bits)