BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P15309 (386 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1ND5-A nrPDB 739 0.0 1RPA-A nrPDB 569 e-163 5CDH-A nrPDB 133 2e-31 4JOD-A nrPDB 100 7e-22 1DKL-A nrPDB 32 0.44 6EHA-A nrPDB 30 2.4 1BVU-A nrPDB 29 2.6 1EPU-A nrPDB 29 2.8 5UQD-A nrPDB 29 3.0 1S8C-A nrPDB 29 3.4 5DX9-A nrPDB 28 4.5 >1ND5-A nrPDB Length = 354 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/354 (100%), Positives = 354/354 (100%) Query: 33 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF 92 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF Sbjct: 1 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF 60 Query: 93 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ 152 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ Sbjct: 61 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ 120 Query: 153 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 212 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP Sbjct: 121 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 180 Query: 213 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK 272 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK Sbjct: 181 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK 240 Query: 273 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR 332 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR Sbjct: 241 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR 300 Query: 333 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMTTNSHQGTEDSTD 386 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMTTNSHQGTEDSTD Sbjct: 301 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMTTNSHQGTEDSTD 354 >1RPA-A nrPDB Length = 342 Score = 569 bits (1467), Expect = e-163, Method: Compositional matrix adjust. Identities = 285/341 (83%), Positives = 307/341 (90%) Query: 33 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF 92 KELKFVTLVFRHGDR PI+TFP DPIKESSWPQGFGQLT+ GM QHYELG YIR+RY +F Sbjct: 1 KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF 60 Query: 93 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ 152 LN SYKH+QVYIRSTDVDRTLMSAMTNLAALFPPEG SIWNP LLWQPIPVHTV LSED+ Sbjct: 61 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRLLWQPIPVHTVSLSEDR 120 Query: 153 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 212 LLYLPFR+CPRFQEL+SETLKSEEF KRL PYK FI TL LSG QDLF IWS++YDP Sbjct: 121 LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP 180 Query: 213 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK 272 LYCESVHNFTLP+WATED MTKL+ELSELSLLSLYGIHKQKEKSRLQGGVLVNEIL +MK Sbjct: 181 LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK 240 Query: 273 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR 332 ATQ +KLIMYSAHDTTVSGLQMALDVYNGLLPPYASCH+ ELY + G +FVEMYYR Sbjct: 241 LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR 300 Query: 333 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECM 373 NETQ+EPYPL LPGC+ SCPLE+FAEL+ PVIPQDW+TECM Sbjct: 301 NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECM 341 >5CDH-A nrPDB Length = 336 Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 161/336 (47%), Gaps = 23/336 (6%) Query: 35 LKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRK--- 91 + F + RHGDR+PI PT W +G GQLT GM+Q Y++G RK+Y + Sbjct: 1 MVFAVDIIRHGDRTPIVALPT---VNYQWQEGLGQLTAEGMQQEYKMGVAFRKKYIEELH 57 Query: 92 FLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPP-EGVSIWNPIL----LWQPIPVHTV 146 L E Y++ +Y+RSTD RTLMSA + L L+PP G SI +QPIPV + Sbjct: 58 LLPEHYEYGTIYVRSTDYARTLMSAQSLLMGLYPPGTGPSIPAGTSALPHAFQPIPVFSA 117 Query: 147 PLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIW 206 P D+++ R + +E + E+Q++ + KD +L+G++ L + Sbjct: 118 PSKYDEVIIQQVDRKERKKLMEQYVFSTREWQQKNNELKDKYPLWSRLTGINIDTLEDL- 176 Query: 207 SKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNE 266 V LY +HN +P + + + +E + ++ K ++ + + L+ Sbjct: 177 ETVGHTLYVHQIHNAPMPEGLASNDIETIINSAEWAFMAQ---EKPQQIANVYSSKLMTN 233 Query: 267 ILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYF 326 I +++ + S K ++ SAHDTT++ + L PPYAS LY Y+ Sbjct: 234 IADYLNSGSMKKSKLKYVLLSAHDTTIASVLSFLGAPLEKSPPYASNVNFSLYDNGANYY 293 Query: 327 -VEMYYRNETQHEPYPLMLPGCSPS-CPLERFAELV 360 V++ Y P+++P C S C L++ LV Sbjct: 294 TVKITYNGN------PVLIPACGGSVCELQQLVNLV 323 >4JOD-A nrPDB Length = 396 Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 110/405 (27%), Positives = 178/405 (43%), Gaps = 81/405 (20%) Query: 26 LDRSVLAKELKFVTLVFRHGDRSPIDTFPTDPIKE---------------------SSWP 64 +DRS+L +LK V +VFRHG RSP+ P + E + P Sbjct: 11 VDRSLL--KLKMVQVVFRHGARSPLKPLPLEEQVEWNPQLLEVPPQTQFDYTVTNLAGGP 68 Query: 65 QGF------------------GQLTQLGMEQHYELGEYIRKRYRK---FLNESYKHEQVY 103 + + GQLT++GM+Q + LGE +RK Y + FL+ ++ ++V+ Sbjct: 69 KPYSPYDSQYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVF 128 Query: 104 IRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPR 163 IRST++ R L S LA LF + PI +HT ++ ++LY +++C Sbjct: 129 IRSTNIFRNLESTRCLLAGLFQCQKEG---------PIIIHTDE-ADSEVLYPNYQSCWS 178 Query: 164 FQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTL 223 ++ ++ Q + + + + G+ D + + D + E HN L Sbjct: 179 LRQRTRGRRQTASLQPGI---SEDLKKVKDRMGIDSSDKVDFFI-LLDNVAAEQAHN--L 232 Query: 224 PSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGV------LVNEILNHMKRATQI 277 PS ++ E + SLY + K+ +S LQ V L + +L M AT Sbjct: 233 PSCPMLKRFARMIEQRAVDT-SLYILPKEDRES-LQMAVGPFLHILESNLLKAMDSATAP 290 Query: 278 PSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELY--FEKGEYFVEMYYRNET 335 +KL +Y+AHD T L M L +++ PP+A ELY E E+FV++YY + Sbjct: 291 DKIRKLYLYAAHDVTFIPLLMTLGIFDHKWPPFAVDLTMELYQHLESKEWFVQLYYHGKE 350 Query: 336 QHEPYPLMLPGCSPS--CPLERF--AELVGPVIPQDWSTECMTTN 376 Q +P P CPL+ F A V + P+ + C T Sbjct: 351 Q-------VPRGCPDGLCPLDMFLNAMSVYTLSPEKYHALCSQTQ 388 >1DKL-A nrPDB Length = 410 Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 34 ELKFVTLVFRHGDRSPIDTF----PTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKR 88 +L+ V +V RHG R+P P +WP G LT G E LG Y R+R Sbjct: 7 KLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQR 65 >6EHA-A nrPDB Length = 288 Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 18/123 (14%) Query: 156 LPFRNCPRFQELESETLKSEEFQKRLHPY----------KDFIATLGKLSGLHGQDLFGI 205 L F PR+QE+ T + + KRLH + LG LSG GQ L I Sbjct: 93 LAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSG--GQVLKKI 150 Query: 206 WSKVYD-PLYCESVHNFTLPSWATEDTMTKLREL--SELSLLSLYGIHKQKEKSRLQGGV 262 K D P E + FT P+ A + TK ++L S ++ L + +Q+ + Sbjct: 151 AQKALDLPSSGEGLAFFTFPNIA---SATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAF 207 Query: 263 LVN 265 L+N Sbjct: 208 LLN 210 >1BVU-A nrPDB Length = 418 Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 214 YCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGG--VLVNEILNHM 271 Y E V N T W E+T KL + + +Y HK+K + V V+ + M Sbjct: 351 YFEWVQNITGDYWTVEETRAKLDKKMTKAFWDVYNTHKEKNINMRDAAYVVAVSRVYQAM 410 Query: 272 K 272 K Sbjct: 411 K 411 >1EPU-A nrPDB Length = 591 Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 78 HYELGEYIRKRYRKFLNESYKHEQVYIRSTDVD-RTLMSAMTNLAALFPPEGVSIWNPIL 136 H L E K+Y++ +++ K EQ TD D + M N+ + + +S ++ I Sbjct: 345 HLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIR 404 Query: 137 LWQPIPVHTVPLSEDQLLYL 156 + +H +SE+ L L Sbjct: 405 IILLYIIHKGGISEENLAKL 424 >5UQD-A nrPDB Length = 442 Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Query: 279 SYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCH 314 + K++I++ AHD +A+D+Y PP + CH Sbjct: 349 AVKEVIVFDAHDLHKVAHHLAMDLYE---PPVSQCH 381 >1S8C-A nrPDB Length = 233 Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 18/123 (14%) Query: 156 LPFRNCPRFQELESETLKSEEFQKRLHPY----------KDFIATLGKLSGLHGQDLFGI 205 L F PR+QE+ T + + KRLH + LG LSG GQ L I Sbjct: 93 LAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSG--GQVLKKI 150 Query: 206 WSKVYD-PLYCESVHNFTLPSWATEDTMTKLREL--SELSLLSLYGIHKQKEKSRLQGGV 262 K D P E + FT P+ A + TK ++L S ++ L + +Q+ + Sbjct: 151 AQKALDLPSSGEGLAFFTFPNIA---SATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAF 207 Query: 263 LVN 265 L+N Sbjct: 208 LLN 210 >5DX9-A nrPDB Length = 316 Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 110 DRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLP 157 D+T L +FPP GV NP+++ P+ V T L +++ LP Sbjct: 213 DKTDEDMFRALRTIFPPGGVVDNNPVVMKPPVAV-TSALEPEEVAELP 259 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1ND5-A nrPDB 584 e-167 1RPA-A nrPDB 537 e-153 5CDH-A nrPDB 419 e-118 4JOD-A nrPDB 379 e-105 Sequences not found previously or not previously below threshold: 2WNI-A nrPDB 47 1e-05 1NT4-A nrPDB 45 6e-05 1QFX-A nrPDB 44 9e-05 1SK9-A nrPDB 43 2e-04 1DKL-A nrPDB 41 6e-04 3K4P-A nrPDB 36 0.035 5LS6-A nrPDB 35 0.052 1Z7M-A nrPDB 33 0.20 6DDT-A nrPDB 32 0.31 2BQ1-I nrPDB 30 2.1 5K4B-A nrPDB 29 2.8 3GON-A nrPDB 29 4.1 1YWK-A nrPDB 29 4.5 6MZD-C nrPDB 28 6.1 6MJP-C nrPDB 28 6.3 >1ND5-A nrPDB Length = 354 Score = 584 bits (1504), Expect = e-167, Method: Composition-based stats. Identities = 354/354 (100%), Positives = 354/354 (100%) Query: 33 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF 92 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF Sbjct: 1 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF 60 Query: 93 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ 152 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ Sbjct: 61 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ 120 Query: 153 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 212 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP Sbjct: 121 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 180 Query: 213 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK 272 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK Sbjct: 181 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK 240 Query: 273 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR 332 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR Sbjct: 241 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR 300 Query: 333 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMTTNSHQGTEDSTD 386 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMTTNSHQGTEDSTD Sbjct: 301 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMTTNSHQGTEDSTD 354 >1RPA-A nrPDB Length = 342 Score = 537 bits (1384), Expect = e-153, Method: Composition-based stats. Identities = 285/341 (83%), Positives = 307/341 (90%) Query: 33 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF 92 KELKFVTLVFRHGDR PI+TFP DPIKESSWPQGFGQLT+ GM QHYELG YIR+RY +F Sbjct: 1 KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF 60 Query: 93 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ 152 LN SYKH+QVYIRSTDVDRTLMSAMTNLAALFPPEG SIWNP LLWQPIPVHTV LSED+ Sbjct: 61 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRLLWQPIPVHTVSLSEDR 120 Query: 153 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 212 LLYLPFR+CPRFQEL+SETLKSEEF KRL PYK FI TL LSG QDLF IWS++YDP Sbjct: 121 LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP 180 Query: 213 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK 272 LYCESVHNFTLP+WATED MTKL+ELSELSLLSLYGIHKQKEKSRLQGGVLVNEIL +MK Sbjct: 181 LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK 240 Query: 273 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR 332 ATQ +KLIMYSAHDTTVSGLQMALDVYNGLLPPYASCH+ ELY + G +FVEMYYR Sbjct: 241 LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR 300 Query: 333 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECM 373 NETQ+EPYPL LPGC+ SCPLE+FAEL+ PVIPQDW+TECM Sbjct: 301 NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECM 341 >5CDH-A nrPDB Length = 336 Score = 419 bits (1078), Expect = e-118, Method: Composition-based stats. Identities = 98/337 (29%), Positives = 161/337 (47%), Gaps = 23/337 (6%) Query: 35 LKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRK--- 91 + F + RHGDR+PI PT W +G GQLT GM+Q Y++G RK+Y + Sbjct: 1 MVFAVDIIRHGDRTPIVALPT---VNYQWQEGLGQLTAEGMQQEYKMGVAFRKKYIEELH 57 Query: 92 FLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPP-EGVSIWNPILL----WQPIPVHTV 146 L E Y++ +Y+RSTD RTLMSA + L L+PP G SI +QPIPV + Sbjct: 58 LLPEHYEYGTIYVRSTDYARTLMSAQSLLMGLYPPGTGPSIPAGTSALPHAFQPIPVFSA 117 Query: 147 PLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIW 206 P D+++ R + +E + E+Q++ + KD +L+G++ L + Sbjct: 118 PSKYDEVIIQQVDRKERKKLMEQYVFSTREWQQKNNELKDKYPLWSRLTGINIDTLEDL- 176 Query: 207 SKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNE 266 V LY +HN +P + + + +E + ++ K ++ + + L+ Sbjct: 177 ETVGHTLYVHQIHNAPMPEGLASNDIETIINSAEWAFMAQ---EKPQQIANVYSSKLMTN 233 Query: 267 ILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYF 326 I +++ + S K ++ SAHDTT++ + L PPYAS LY Y+ Sbjct: 234 IADYLNSGSMKKSKLKYVLLSAHDTTIASVLSFLGAPLEKSPPYASNVNFSLYDNGANYY 293 Query: 327 -VEMYYRNETQHEPYPLMLPGCSPS-CPLERFAELVG 361 V++ Y P+++P C S C L++ LV Sbjct: 294 TVKITYNGN------PVLIPACGGSVCELQQLVNLVH 324 >4JOD-A nrPDB Length = 396 Score = 379 bits (974), Expect = e-105, Method: Composition-based stats. Identities = 110/405 (27%), Positives = 178/405 (43%), Gaps = 81/405 (20%) Query: 26 LDRSVLAKELKFVTLVFRHGDRSPIDTFPTDPIKE---------------------SSWP 64 +DRS+L +LK V +VFRHG RSP+ P + E + P Sbjct: 11 VDRSLL--KLKMVQVVFRHGARSPLKPLPLEEQVEWNPQLLEVPPQTQFDYTVTNLAGGP 68 Query: 65 QGF------------------GQLTQLGMEQHYELGEYIRKRYRK---FLNESYKHEQVY 103 + + GQLT++GM+Q + LGE +RK Y + FL+ ++ ++V+ Sbjct: 69 KPYSPYDSQYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVF 128 Query: 104 IRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPR 163 IRST++ R L S LA LF + PI +HT ++ ++LY +++C Sbjct: 129 IRSTNIFRNLESTRCLLAGLFQCQKEG---------PIIIHTDE-ADSEVLYPNYQSCWS 178 Query: 164 FQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTL 223 ++ ++ Q + + + + G+ D + + D + E HN L Sbjct: 179 LRQRTRGRRQTASLQPGI---SEDLKKVKDRMGIDSSDKVDFFI-LLDNVAAEQAHN--L 232 Query: 224 PSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGV------LVNEILNHMKRATQI 277 PS ++ E + SLY + K+ +S LQ V L + +L M AT Sbjct: 233 PSCPMLKRFARMIEQRAVDT-SLYILPKEDRES-LQMAVGPFLHILESNLLKAMDSATAP 290 Query: 278 PSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYF--EKGEYFVEMYYRNET 335 +KL +Y+AHD T L M L +++ PP+A ELY E E+FV++YY + Sbjct: 291 DKIRKLYLYAAHDVTFIPLLMTLGIFDHKWPPFAVDLTMELYQHLESKEWFVQLYYHGKE 350 Query: 336 QHEPYPLMLPGCSPS--CPLERF--AELVGPVIPQDWSTECMTTN 376 Q +P P CPL+ F A V + P+ + C T Sbjct: 351 Q-------VPRGCPDGLCPLDMFLNAMSVYTLSPEKYHALCSQTQ 388 >2WNI-A nrPDB Length = 418 Score = 47.1 bits (110), Expect = 1e-05, Method: Composition-based stats. Identities = 64/359 (17%), Positives = 130/359 (36%), Gaps = 44/359 (12%) Query: 45 GDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF-LNESYKH--EQ 101 G+R I+ P E W G+LT G G + YR+ L ++ E Sbjct: 33 GNREAIEAATGRPWTE--WTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAES 90 Query: 102 VYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPI-------PVHTVPLSEDQLL 154 +Y+R++ + RT +A + FP GV+I P+ T P + + Sbjct: 91 IYVRASPLQRTRATAQALVDGAFPGCGVAIHYANGDADPLFQTDKFAATQTDPARQLAAV 150 Query: 155 YLPFRNCPRFQELESETLK--SEEFQKRLHPYKDFIATLG---KLSGLHGQDLFGIWSKV 209 + + ++ + T++ + + P F SG + + + Sbjct: 151 KEKAGDLAQRRQALAPTIQLLKQAVCQADKPCPIFDTPWRVEQSKSGKTTISGLSVMANM 210 Query: 210 YDPLYCESVHNFTLPS--WATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEI 267 + L N L W +++ L L + + ++ +G VL+N + Sbjct: 211 VETLRLGWSENLPLSQLAWGKIAQASQITALLPLLTENYDLSNDVLYTAQKRGSVLLNAM 270 Query: 268 LNHMKRATQIPSYKKLIMYSAHDTTVSGLQMAL-------DVYNGLLPPYASCHLTELYF 320 L+ +K + ++ AHDT ++ ++ + G +PP S + E + Sbjct: 271 LDGVKPEASPN--VRWLLLVAHDTNIAMVRTLMNFSWQLPGYSRGNIPP-GSSLVLERWR 327 Query: 321 E--KGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTE-CMTTN 376 + GE ++ +Y++ + + L P P++ Q+W C T+ Sbjct: 328 DAKSGERYLRVYFQAQGLDDLRRLQTPDAQH------------PMLRQEWRQPGCRQTD 374 >1NT4-A nrPDB Length = 391 Score = 44.8 bits (104), Expect = 6e-05, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 102/306 (33%), Gaps = 50/306 (16%) Query: 34 ELKFVTLVFRHGDRSPI--DTFPTDPIKESSWPQ---GFGQLTQLGMEQHYELGEYIRKR 88 +L+ V ++ R R+P+ + + + WP+ GQLT G +G Y+R+ Sbjct: 8 QLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREW 67 Query: 89 YRKF-------LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFP--------PEGVSIWN 133 + Y VY + + RT+ +A + FP E + + Sbjct: 68 LAEQGMVKSGECPPPY---TVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMD 124 Query: 134 PILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETL----------------KSEEF 177 P + P+ +Q + + + Q +S L + Sbjct: 125 PT--FNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSL 182 Query: 178 QKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPS--WATEDTMTKL 235 + + +SG + + + D + F + W + + Sbjct: 183 VDGKNTFSAKYQQEPGVSG-----PLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQW 237 Query: 236 RELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSG 295 + LS+L + E +R LV+ I + T S K+ + HD+ ++ Sbjct: 238 KVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKAL--VTDRTSAPKITVLVGHDSNIAS 295 Query: 296 LQMALD 301 L ALD Sbjct: 296 LLTALD 301 >1QFX-A nrPDB Length = 460 Score = 44.4 bits (103), Expect = 9e-05, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 33/145 (22%) Query: 260 GGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDV--YNGLLP--------P 309 G V N L + + L AHDT ++ + AL V N LP P Sbjct: 291 GAVYANASLTLLNQG--PKEAGSLFFNFAHDTNITPILAALGVLIPNEDLPLDRVAFGNP 348 Query: 310 YA----------------SCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPL 353 Y+ SC T L E +V + P+ G SCPL Sbjct: 349 YSIGNIVPMGGHLTIERLSCQATALSDEGT--YVRLVLN--EAVLPFNDCTSGPGYSCPL 404 Query: 354 ERFAELVGPVIPQDWSTECMTTNSH 378 + ++ +P D++T C + S+ Sbjct: 405 ANYTSILNKNLP-DYTTTCNVSASY 428 >1SK9-A nrPDB Length = 439 Score = 42.9 bits (99), Expect = 2e-04, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 100/316 (31%), Gaps = 49/316 (15%) Query: 34 ELKFVTLVFRHGDRSP--------------IDTFPTDP------IKESSWPQGFGQLTQL 73 + V ++ RHG R P I TD +K ++ G LT Sbjct: 45 RITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPF 104 Query: 74 GMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWN 133 G +Q G +RY K L S +IR++ DR + S + F ++ Sbjct: 105 GEQQLVNSGIKFYQRY-KALARSVVP---FIRASGSDRVIASGEKFIEG-FQQAKLADPG 159 Query: 134 PILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQ--ELESETLK--SEEFQKRLHPYKDFIA 189 P +P SE L C +F+ +L E + F + + Sbjct: 160 ATNRAAPAISVIIPESETFNNTLDHGVCTKFEASQLGDEVAANFTALFAPDIRARAEKHL 219 Query: 190 TLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGI 249 L+ L + S +D + S + P + SL YG Sbjct: 220 PGVTLTDEDVVSLMDMCS--FDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGY 277 Query: 250 HKQKEKSRLQGGVLVNEILNHM-----------------KRATQIPSYKKLIMYSAHDTT 292 QG NE++ + AT + + +S HD + Sbjct: 278 GAGNPLGPAQGIGFTNELIARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFS-HDNS 336 Query: 293 VSGLQMALDVYNGLLP 308 + + AL +YNG P Sbjct: 337 MVSIFFALGLYNGTEP 352 >1DKL-A nrPDB Length = 410 Score = 41.3 bits (95), Expect = 6e-04, Method: Composition-based stats. Identities = 63/315 (20%), Positives = 104/315 (33%), Gaps = 51/315 (16%) Query: 34 ELKFVTLVFRHGDRSPIDTFPT----DPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRY 89 +L+ V +V RHG R+P P +WP G LT G E LG Y R+R Sbjct: 7 KLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRL 66 Query: 90 RK--FLNESYKHE--QVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHT 145 L + + QV I + +RT + A L P +++ P P+ Sbjct: 67 VADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFN 126 Query: 146 VPLS-----------EDQLL------YLPF--RNCPRFQELES-------ETLKSEEFQK 179 PL D +L F F+ELE E Q Sbjct: 127 -PLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQD 185 Query: 180 RLHPYKDFIATLGKLSGLHGQ--DLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRE 237 + + K+S + + S + + + P W + Sbjct: 186 ESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNT 245 Query: 238 LSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKK----------LIMYS 287 L L Y + + E +R + +L+ +K A +K ++ + Sbjct: 246 LLSLHNAQFYLLQRTPEVARSRA----TPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIA 301 Query: 288 AHDTTVSGLQMALDV 302 HDT ++ L AL++ Sbjct: 302 GHDTNLANLGGALEL 316 >3K4P-A nrPDB Length = 444 Score = 35.5 bits (80), Expect = 0.035, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 98/319 (30%), Gaps = 54/319 (16%) Query: 34 ELKFVTLVFRHGDRSPID-------TFPTDPIKE-------------SSWPQGFGQLTQL 73 + F ++ RHG R P D + + ++ G LT Sbjct: 49 RVTFAQVLSRHGARYPTDSKGKKYSALIEEIQQNATTFDGKYAFLKTYNYSLGADDLTPF 108 Query: 74 GMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEG---VS 130 G ++ G +RY + L + +IRS+ R + S + F Sbjct: 109 GEQELVNSGIKFYQRY-ESLTRNIVP---FIRSSGSSRVIASGKKFIEG-FQSTKLKDPR 163 Query: 131 IWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELE----SETLKSEEFQKRLHPYKD 186 + V + S + L C F++ E E + F + + Sbjct: 164 AQPGQSSPKIDVVISEASSSNNTLDPG--TCTVFEDSELADTVEANFTATFVPSIRQRLE 221 Query: 187 FIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSL 246 + L+ L + S +D + +V P T + L L Sbjct: 222 NDLSGVTLTDTEVTYLMDMCS--FDTISTSTVDTKLSPFCDLF-THDEWINYDYLQSLKK 278 Query: 247 YGIH--------------KQKEKSRLQGGVLVNEILNHMKRATQIPSY-KKLIMYS--AH 289 Y H + +RL + ++ ++ + ++ +Y+ +H Sbjct: 279 YYGHGAGNPLGPTQGVGYANELIARLTHSPVHDDTSSNHTLDSSPATFPLNSTLYADFSH 338 Query: 290 DTTVSGLQMALDVYNGLLP 308 D + + AL +YNG P Sbjct: 339 DNGIISILFALGLYNGTKP 357 >5LS6-A nrPDB Length = 695 Score = 35.2 bits (79), Expect = 0.052, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 22/200 (11%) Query: 163 RFQELESETLKSEEFQKRLHPYKDFIATLGKLSGL---HGQDLFGIWSKVYDPLYCESVH 219 R + LE + ++E+++R + ++ L G ++V +V Sbjct: 56 RQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVA 115 Query: 220 NFT-LPSW-ATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQI 277 + + SW + + E + L+ I ++ Q G + E++ + Sbjct: 116 SVPIMYSWSPLQQNF--MVEDETV----LHNIPYMGDEVLDQDGTFIEELIKNYDGKVHG 169 Query: 278 PSYKKLIMYSAHDTTVSGLQMALDVYNGLLPP--YASCHLTE-----LYFEKGEYFVEMY 330 I +D L AL YN PP + S + E + ++ Sbjct: 170 DRECGFI----NDEIFVELVNALGQYNESRPPRKFPSDKIFEAISSMFPDKGTAEELKEK 225 Query: 331 YRNETQHEPYPLMLPGCSPS 350 Y+ TQ + + P C+P+ Sbjct: 226 YKELTQQQLPGALPPECTPN 245 >1Z7M-A nrPDB Length = 344 Score = 33.2 bits (74), Expect = 0.20, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 97/303 (32%), Gaps = 34/303 (11%) Query: 57 PIKESSWPQGFGQLTQLGMEQHYELGEYIRK-----RYRKFLNESYKHEQVYIRSTDVDR 111 P+ ++T ++ ++ +RK Y++ + S+++ Q+Y + Sbjct: 18 EKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGK 77 Query: 112 TLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSED-QLLYLPFRNCPRFQELESE 170 T + EG SI P+ + + Y F R ++ Sbjct: 78 TF--NQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKG 135 Query: 171 TLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVH-NFTLPSWATE 229 +E +Q + + + D + E + N T+ + Sbjct: 136 R-STENYQIGIELFGE------------SADKSELEILSLALQVIEQLGLNKTVFEIGSA 182 Query: 230 DTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKR------ATQIPSYKKL 283 +L +L++ S L + +K+ S L + N ++ T S + Sbjct: 183 KFFQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLEN 242 Query: 284 IMYSAHDTTVSGLQMALDVYNGLLP---PYASCHLTELYFEKGEYFVEMYYRNETQHEPY 340 ++ + D + L ++ L P K +Y+ ++ ++ + Sbjct: 243 LVTNTKDDVLISSFDQLKEFSEKLSMIKPIIIDLGM---VPKMDYYTDLMFKAYSSAANQ 299 Query: 341 PLM 343 P++ Sbjct: 300 PIL 302 >6DDT-A nrPDB Length = 868 Score = 32.5 bits (72), Expect = 0.31, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 18/164 (10%) Query: 50 IDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDV 109 + D E+ WP+G G T M + L ++ K +VY R+ + Sbjct: 267 LVKIRKDVAVETWWPRGHGNQTGYNMTILFALDGGLKIE---------KAAKVYFRTVQL 317 Query: 110 DRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELES 169 + L+ F G+ I+ W P ++ D+L L FQ + Sbjct: 318 IEEGIKGSPGLSFYFKINGLPIFLKGSNWIPADSFQDKVTSDRLQLL-------FQSVVD 370 Query: 170 ETLKS-EEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 212 + + + ++ +F A +L G+ F S +Y Sbjct: 371 ANMNTLRVWGGGIYEQDEFYALCDEL-GIMVWQDFMFASALYPT 413 >2BQ1-I nrPDB Length = 319 Score = 29.8 bits (65), Expect = 2.1, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 6/156 (3%) Query: 171 TLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATED 230 L S + P + I LS Q +++ + +++ N D Sbjct: 25 RLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGL---TLLDTIQNIAGAPSLMAD 81 Query: 231 TMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILN--HMKRATQIPSYKKLIMYSA 288 +T E + LS +S + S + + + ++ + P +K + A Sbjct: 82 AITP-HEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILA 140 Query: 289 HDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGE 324 H + L+ + + S +YF Sbjct: 141 HYVSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRG 176 >5K4B-A nrPDB Length = 368 Score = 29.4 bits (64), Expect = 2.8, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 14/111 (12%) Query: 160 NCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVH 219 N PR++ E SEE + + +G+ L H Sbjct: 173 NEPRYKFDEPNPFISEEEEGEVASVAYRYRKWDLNNGI--------------TLIARCEH 218 Query: 220 NFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNH 270 + + E ++ L+E G+ +++ +G VL NE+ N+ Sbjct: 219 DAVMQGPNNETQFLTIKALNEWDSKLANGVEWRRKLDTQRGAVLANELRNN 269 >3GON-A nrPDB Length = 335 Score = 29.0 bits (63), Expect = 4.1, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 19/137 (13%) Query: 149 SEDQLLYLPFRNCPRFQELESETLKS---EEFQKRLHPYK-----DFIATLGKLSGLHGQ 200 +ED +LY F LE E L + ++ + K DF+ K + Sbjct: 156 AEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSH 215 Query: 201 DLFGIWSKVYDPLYCESVHN-FTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQ 259 + I + S +L + K+ E E++ L G+ Sbjct: 216 MVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGL---------- 265 Query: 260 GGVLVNEILNHMKRATQ 276 + +L +K A+Q Sbjct: 266 STDIYTPLLRQLKEASQ 282 >1YWK-A nrPDB Length = 289 Score = 28.6 bits (62), Expect = 4.5, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 1/86 (1%) Query: 128 GVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDF 187 G +I P W +P HT + +Y R + + +++ + Sbjct: 183 GYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMS-NEQAAI 241 Query: 188 IATLGKLSGLHGQDLFGIWSKVYDPL 213 + SG+ + IW+ + + Sbjct: 242 SPSWSIHSGVGTSNYSFIWAMCGENI 267 >6MZD-C nrPDB Length = 929 Score = 28.2 bits (61), Expect = 6.1, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%) Query: 164 FQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTL 223 Q+L + E R P D + +L G+ +L + + + +F + Sbjct: 42 LQQLGRGCHRYSELYGRTDPILDDVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPV 101 >6MJP-C nrPDB Length = 191 Score = 28.2 bits (61), Expect = 6.3, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 8/109 (7%) Query: 238 LSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQ 297 L E + + GI + + L VL +L S + S + Sbjct: 91 LQEWEITARRGILSKDQVLTLYDDVLAKNLL--------PDSGFDTLTTSEMSIQLKSRD 142 Query: 298 MALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPG 346 D L P H + ++ E+Y + + ++E ++P Sbjct: 143 FWADKPVELRGPQFETHGQAMKGNFADHSAELYNQVQGRYETLTPLVPR 191 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.307 0.124 0.325 Lambda K H 0.267 0.0380 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,261,540 Number of Sequences: 36641 Number of extensions: 499876 Number of successful extensions: 1189 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 1147 Number of HSP's gapped (non-prelim): 39 length of query: 386 length of database: 10,336,785 effective HSP length: 99 effective length of query: 287 effective length of database: 6,709,326 effective search space: 1925576562 effective search space used: 1925576562 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 60 (27.8 bits)