BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P13804 (333 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2A1U-A nrPDB 676 0.0 1EFP-A nrPDB 291 2e-79 4L2I-A nrPDB 170 1e-42 5OW0-A nrPDB 165 2e-41 6FAH-A nrPDB 160 9e-40 5OL2-A nrPDB 159 1e-39 3CLR-D nrPDB 114 6e-26 4IPJ-A nrPDB 28 5.5 4P2J-A nrPDB 28 6.3 5D6S-A nrPDB 28 7.8 5DQP-A nrPDB 27 9.6 >2A1U-A nrPDB Length = 333 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC Sbjct: 1 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60 Query: 61 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL Sbjct: 61 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120 Query: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG Sbjct: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180 Query: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ Sbjct: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240 Query: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300 Query: 301 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK Sbjct: 301 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333 >1EFP-A nrPDB Length = 307 Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 151/255 (59%), Positives = 189/255 (74%), Gaps = 3/255 (1%) Query: 73 IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132 +AKVLVA+ +Y L E LI+ +Y+HI A A+ KN++PRVAA L+V + Sbjct: 53 VAKVLVAEDALYGHRLAEPTAALIVGLAG--DYSHIAAPATTDAKNVMPRVAALLDVMVL 110 Query: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTS 192 SD+ AI DTF R IYAGNA+ VK + KVF++R SFDAA G + +E A++ Sbjct: 111 SDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETAAAAD 170 Query: 193 PVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAV 252 P +S W+ ++ +SDRPELT A+ VVSGGRGL S E+F ++ +LAD+L AAVGASRAAV Sbjct: 171 P-GLSSWVADEVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAV 229 Query: 253 DAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVAD 312 D+G+ PND QVGQTGK+VAPELY+AVGISGAIQHLAGMKDSK IVAINKD EAPIFQ+AD Sbjct: 230 DSGYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIAD 289 Query: 313 YGIVADLFKVVPEMT 327 YG+V DLF VVPE+T Sbjct: 290 YGLVGDLFSVVPELT 304 >4L2I-A nrPDB Length = 346 Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/269 (37%), Positives = 150/269 (55%), Gaps = 18/269 (6%) Query: 76 VLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDI 135 V V Q +K +E T ++ + + GA+ G++L PR+AA++ +D Sbjct: 72 VYVCQDPAFKYYSTDEYTNAFCEMIDEYQPSSVFIGATNDGRDLGPRIAARVNTGLCADC 131 Query: 136 IAIKSPD----TFVRTIYAGNALCTVKCDE-KVKVFSVRGTSFDAAATSGGSASSEKASS 190 + + + + R GN + T+ C E + ++ +VR +F A S + E + Sbjct: 132 TILDAEEDGLIEWTRPAAGGNIMATILCKEHRPQMGTVRPKTFKAMEPDA-SRTGEVINY 190 Query: 191 TSPVEISEWLDQKLTKSDRPELTG--------AKVVVSGGRGLKSGENFKLLYDLADQLH 242 T + +D ++T R E+ A V SGGRG+K+ ENF LLYDLA L Sbjct: 191 T----LKNHVDDRVTCIRREEVVSEGEMAIDDAPFVCSGGRGMKAKENFSLLYDLAHALG 246 Query: 243 AAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKD 302 AVG SRAAVD GF+ + QVGQ+GK V P++Y A GISG++QH AGM S TIV INKD Sbjct: 247 GAVGGSRAAVDEGFIEHPRQVGQSGKTVTPKIYFACGISGSVQHKAGMSKSDTIVCINKD 306 Query: 303 PEAPIFQVADYGIVADLFKVVPEMTEILK 331 P+AP+F+++ YGIV D K++P +T +K Sbjct: 307 PDAPMFEISKYGIVGDALKILPLLTAKIK 335 >5OW0-A nrPDB Length = 294 Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 5/234 (2%) Query: 101 KQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD-TFVRTIYAGNALCTVKC 159 K+ Y I +A G L +A L +S++ AI SPD T R++Y A+ K Sbjct: 65 KRERYELILLSTTAIGSGLAGPLAVSLGAPILSEVTAI-SPDLTIERSLYGSKAVARYKL 123 Query: 160 DEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVV 219 + V +++ F+AA G +A+ E P +I+ + + ++ P L A+VVV Sbjct: 124 ESGPLVLTIKRKYFEAATLEGTTATEEL--PVGPQKITLLEEIEEERTGIP-LEDAEVVV 180 Query: 220 SGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVG 279 +GGRG+ SG+NF +L ++A L+ AVGASR AVD G++P Q+GQTGKIVAP +Y AVG Sbjct: 181 TGGRGIGSGDNFSILKEIAGMLNGAVGASRGAVDEGWMPPGAQIGQTGKIVAPTVYFAVG 240 Query: 280 ISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333 +SGA QHLAG+ ++K ++AINKD EA IF+ A +GIV D K VP + LK+ Sbjct: 241 VSGASQHLAGISNAKCVIAINKDNEANIFKRARFGIVGDYKKAVPALINALKEN 294 >6FAH-A nrPDB Length = 396 Score = 160 bits (404), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 111/338 (32%), Positives = 170/338 (50%), Gaps = 14/338 (4%) Query: 8 GQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITA----ATRLGGEVSCLVAGTKCDKV 63 G + L ++ V AE + P+ + A +G E+ ++ G+ ++ Sbjct: 57 GTEKIVRDLSMYKGVWVFAEQREGKIMPVVFELLGEGKKLANEIGTELCAILCGSNVAEL 116 Query: 64 AQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRV 123 +L G KV +A + + + +I + + GA+ G++L P + Sbjct: 117 TDEL-FAYGADKVYLADAPELEKYTTDGYSKIINEAIGLYKPEIVLYGATHIGRDLAPCL 175 Query: 124 AAKLEVAPISDIIAIK-SPDT----FVRTIYAGNALCTVKC-DEKVKVFSVRGTSFDAAA 177 A K+ +D ++ PD R + GN + T+ C + ++ +VR D AA Sbjct: 176 AVKVNTGLTADCTKLEIDPDDKKIRQTRPAFGGNLMATIVCPGSRPQMSTVRPGVMDKAA 235 Query: 178 ---TSGGSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLL 234 + G A+ ++ L+ T +D ++ A +VSGG GL E F+LL Sbjct: 236 YDPSQKGEVIKLDATFNEGDIRTKVLEIVKTTTDNISISDADFIVSGGMGLGKPEGFELL 295 Query: 235 YDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSK 294 LAD+L V SRA VDAG+ + QVGQTG V P++Y A GISGAIQH+AGM+DS Sbjct: 296 KQLADKLGGTVATSRACVDAGWADHAQQVGQTGTTVKPQIYFACGISGAIQHIAGMQDSD 355 Query: 295 TIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK 332 I+AINK+ APIF+VADYGIV DL+KV+P + E L K Sbjct: 356 IIIAINKNENAPIFEVADYGIVGDLYKVIPAIIEELDK 393 >5OL2-A nrPDB Length = 331 Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 22/323 (6%) Query: 21 STLVIAEHANDSLAPITLNTITAATRLGGE----VSCLVAGTKCDKVAQDLCKVAGIAKV 76 + LV+ E + + ++L + AT + + VS L+ G+K + + L G +V Sbjct: 3 NVLVVIEQRENVIQTVSLELLGKATEIAKDYDTKVSALLLGSKVEGLIDTLAHY-GADEV 61 Query: 77 LVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDII 136 +V + E T K + + GA++ G++L PRV+A++ +D Sbjct: 62 IVVDDEALAVYTTEPYTKAAYEAIKAADPIVVLFGATSIGRDLAPRVSARIHTGLTADCT 121 Query: 137 AIK-SPDT----FVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASST 191 + + DT R + GN + T+ C K F + ++ K + Sbjct: 122 GLAVAEDTKLLLMTRPAFGGNIMATIVC----KDFRPQMSTVRPGVMKKNEPDETKEAVI 177 Query: 192 SPVEISEWLDQKLTK--------SDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHA 243 + ++ KL + + ++ AK++VS GRG+ EN +LY+LA+ + Sbjct: 178 NRFKVEFNDADKLVQVVQVIKEAKKQVKIEDAKILVSAGRGMGGKENLDILYELAEIIGG 237 Query: 244 AVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDP 303 V SRA +DAG++ QVGQTGK V P+LYIA GISGAIQH+AGM+D++ IVAINK+P Sbjct: 238 EVSGSRATIDAGWLDKARQVGQTGKTVRPDLYIACGISGAIQHIAGMEDAEFIVAINKNP 297 Query: 304 EAPIFQVADYGIVADLFKVVPEM 326 EAPIF+ AD GIV D+ KV+PE+ Sbjct: 298 EAPIFKYADVGIVGDVHKVLPEL 320 >3CLR-D nrPDB Length = 321 Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 158/318 (49%), Gaps = 21/318 (6%) Query: 23 LVIAEHANDSLAPITLNTITAATRL--GGEVSCLVA--GTKCDKVAQDLCKVAGIAKVLV 78 LVIAEH + L P++L I AA L GE +VA G++ D L V G+ +++V Sbjct: 5 LVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALS-VNGVDELVV 63 Query: 79 AQH---DVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDI 135 + D + ++ LI A + + +L A+K +D+ Sbjct: 64 VKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSL----ASKTGYGFATDV 119 Query: 136 IAIK-SPDTFVRTIYAGNALCTVKCD---EKVKVFSVRGTSFDAAATSGGSASS--EKAS 189 ++ D V T N V+ D + V ++R + F +G S + S Sbjct: 120 YIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPS 179 Query: 190 STSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASR 249 S + ++++ + + ++T ++S GRG+ N + +LAD+ A + S Sbjct: 180 VQSRSQNKDYVE--VGGGNDIDITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSA 237 Query: 250 AAVDAGFVPNDMQVGQTGKIVAP-ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIF 308 DAG++P QVGQ+GK+V +LY+A+GISG+IQH+AGMK TI+A+N DP A IF Sbjct: 238 PIADAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIF 297 Query: 309 QVADYGIVADLFKVVPEM 326 +A YGIVAD+F + E+ Sbjct: 298 TIAKYGIVADIFDIEEEL 315 >4IPJ-A nrPDB Length = 351 Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 22/49 (44%) Query: 106 THICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNAL 154 + C GA A G ++L R P DI+ +PDTF +AL Sbjct: 221 NYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHAL 269 >4P2J-A nrPDB Length = 137 Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 17/36 (47%) Query: 17 LRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVS 52 LR T+ EH+ P TL T+ T L GE S Sbjct: 11 LRITGTITAREHSGTGFHPYTLYTVKYETVLNGENS 46 >5D6S-A nrPDB Length = 399 Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%) Query: 66 DLCKVA-----GIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120 D+C+++ GI L + D+ L EL P + T K F T S GKN+L Sbjct: 264 DICQISCPYNRGIDNPLAS--DIDPDLAMPELLPFLELTNKSFKETFGMIAGSWRGKNIL 321 Query: 121 PRVA 124 R A Sbjct: 322 QRNA 325 >5DQP-A nrPDB Length = 430 Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 222 GRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPE-----LYI 276 GRG N ++DL + + +A A R +DA F+ + Q+ K V PE + + Sbjct: 25 GRG-----NRARIFDLENYIRSAEIARRGRIDAFFLADQPQLTPNPK-VRPEYPFDPIVL 78 Query: 277 AVGISGAIQHLAGMKDSKT 295 A I+G + + G+ + T Sbjct: 79 AAAITGRVPDIGGIVTAST 97 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2A1U-A nrPDB 448 e-126 6FAH-A nrPDB 413 e-116 5OL2-A nrPDB 359 e-100 4L2I-A nrPDB 355 1e-98 3CLR-D nrPDB 315 2e-86 1EFP-A nrPDB 304 3e-83 5OW0-A nrPDB 266 8e-72 Sequences not found previously or not previously below threshold: 1M2H-A nrPDB 31 0.93 6FAH-B nrPDB 30 1.1 2I5B-A nrPDB 29 3.6 3GP8-A nrPDB 29 4.1 4WWV-A nrPDB 29 4.3 2FHK-A nrPDB 27 8.8 CONVERGED! >2A1U-A nrPDB Length = 333 Score = 448 bits (1151), Expect = e-126, Method: Composition-based stats. Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC Sbjct: 1 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60 Query: 61 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL Sbjct: 61 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120 Query: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG Sbjct: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180 Query: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ Sbjct: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240 Query: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300 Query: 301 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK Sbjct: 301 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333 >6FAH-A nrPDB Length = 396 Score = 413 bits (1062), Expect = e-116, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 170/338 (50%), Gaps = 14/338 (4%) Query: 8 GQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITA----ATRLGGEVSCLVAGTKCDKV 63 G + L ++ V AE + P+ + A +G E+ ++ G+ ++ Sbjct: 57 GTEKIVRDLSMYKGVWVFAEQREGKIMPVVFELLGEGKKLANEIGTELCAILCGSNVAEL 116 Query: 64 AQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRV 123 +L G KV +A + + + +I + + GA+ G++L P + Sbjct: 117 TDEL-FAYGADKVYLADAPELEKYTTDGYSKIINEAIGLYKPEIVLYGATHIGRDLAPCL 175 Query: 124 AAKLEVAPISDIIAIK-SPDT----FVRTIYAGNALCTVKC-DEKVKVFSVRGTSFDAAA 177 A K+ +D ++ PD R + GN + T+ C + ++ +VR D AA Sbjct: 176 AVKVNTGLTADCTKLEIDPDDKKIRQTRPAFGGNLMATIVCPGSRPQMSTVRPGVMDKAA 235 Query: 178 ---TSGGSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLL 234 + G A+ ++ L+ T +D ++ A +VSGG GL E F+LL Sbjct: 236 YDPSQKGEVIKLDATFNEGDIRTKVLEIVKTTTDNISISDADFIVSGGMGLGKPEGFELL 295 Query: 235 YDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSK 294 LAD+L V SRA VDAG+ + QVGQTG V P++Y A GISGAIQH+AGM+DS Sbjct: 296 KQLADKLGGTVATSRACVDAGWADHAQQVGQTGTTVKPQIYFACGISGAIQHIAGMQDSD 355 Query: 295 TIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK 332 I+AINK+ APIF+VADYGIV DL+KV+P + E L K Sbjct: 356 IIIAINKNENAPIFEVADYGIVGDLYKVIPAIIEELDK 393 >5OL2-A nrPDB Length = 331 Score = 359 bits (922), Expect = e-100, Method: Composition-based stats. Identities = 104/327 (31%), Positives = 167/327 (51%), Gaps = 22/327 (6%) Query: 21 STLVIAEHANDSLAPITLNTITAATRLGGE----VSCLVAGTKCDKVAQDLCKVAGIAKV 76 + LV+ E + + ++L + AT + + VS L+ G+K + + L G +V Sbjct: 3 NVLVVIEQRENVIQTVSLELLGKATEIAKDYDTKVSALLLGSKVEGLIDTLAHY-GADEV 61 Query: 77 LVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDII 136 +V + E T K + + GA++ G++L PRV+A++ +D Sbjct: 62 IVVDDEALAVYTTEPYTKAAYEAIKAADPIVVLFGATSIGRDLAPRVSARIHTGLTADCT 121 Query: 137 AIKSPDT-----FVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASST 191 + + R + GN + T+ C + F + ++ K + Sbjct: 122 GLAVAEDTKLLLMTRPAFGGNIMATIVCKD----FRPQMSTVRPGVMKKNEPDETKEAVI 177 Query: 192 SPVEISEWLDQKLTK--------SDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHA 243 + ++ KL + + ++ AK++VS GRG+ EN +LY+LA+ + Sbjct: 178 NRFKVEFNDADKLVQVVQVIKEAKKQVKIEDAKILVSAGRGMGGKENLDILYELAEIIGG 237 Query: 244 AVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDP 303 V SRA +DAG++ QVGQTGK V P+LYIA GISGAIQH+AGM+D++ IVAINK+P Sbjct: 238 EVSGSRATIDAGWLDKARQVGQTGKTVRPDLYIACGISGAIQHIAGMEDAEFIVAINKNP 297 Query: 304 EAPIFQVADYGIVADLFKVVPEMTEIL 330 EAPIF+ AD GIV D+ KV+PE+ L Sbjct: 298 EAPIFKYADVGIVGDVHKVLPELISQL 324 >4L2I-A nrPDB Length = 346 Score = 355 bits (912), Expect = 1e-98, Method: Composition-based stats. Identities = 109/328 (33%), Positives = 164/328 (50%), Gaps = 21/328 (6%) Query: 20 QSTLVIAEHANDSLAPITLNTITAATRLGGEVS---CLVAGTKCDKVAQDLCKVAGIAKV 76 + V EH + + +L + + V T K G V Sbjct: 13 KDLWVYVEHYKGEPVHVVYELLGECRKLADKCNQKLAAVLITDDAKDVPSKLIARGADLV 72 Query: 77 LVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDII 136 V Q +K +E T ++ + + GA+ G++L PR+AA++ +D Sbjct: 73 YVCQDPAFKYYSTDEYTNAFCEMIDEYQPSSVFIGATNDGRDLGPRIAARVNTGLCADCT 132 Query: 137 AIKSPD----TFVRTIYAGNALCTVKCDE-KVKVFSVRGTSFDAAATSGGSASSEKASST 191 + + + + R GN + T+ C E + ++ +VR +F A S + E + T Sbjct: 133 ILDAEEDGLIEWTRPAAGGNIMATILCKEHRPQMGTVRPKTFKAMEPDA-SRTGEVINYT 191 Query: 192 SPVEISEWLDQKLTKSDRPE--------LTGAKVVVSGGRGLKSGENFKLLYDLADQLHA 243 + +D ++T R E + A V SGGRG+K+ ENF LLYDLA L Sbjct: 192 ----LKNHVDDRVTCIRREEVVSEGEMAIDDAPFVCSGGRGMKAKENFSLLYDLAHALGG 247 Query: 244 AVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDP 303 AVG SRAAVD GF+ + QVGQ+GK V P++Y A GISG++QH AGM S TIV INKDP Sbjct: 248 AVGGSRAAVDEGFIEHPRQVGQSGKTVTPKIYFACGISGSVQHKAGMSKSDTIVCINKDP 307 Query: 304 EAPIFQVADYGIVADLFKVVPEMTEILK 331 +AP+F+++ YGIV D K++P +T +K Sbjct: 308 DAPMFEISKYGIVGDALKILPLLTAKIK 335 >3CLR-D nrPDB Length = 321 Score = 315 bits (806), Expect = 2e-86, Method: Composition-based stats. Identities = 99/323 (30%), Positives = 159/323 (49%), Gaps = 21/323 (6%) Query: 22 TLVIAEHANDSLAPITLNTITAATRL--GGEVSCLVA--GTKCDKVAQDLCKVAGIAKVL 77 LVIAEH + L P++L I AA L GE +VA G++ D L V G+ +++ Sbjct: 4 ILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALS-VNGVDELV 62 Query: 78 VAQH---DVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISD 134 V + D + ++ LI A + + +L A+K +D Sbjct: 63 VVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSL----ASKTGYGFATD 118 Query: 135 IIAIK-SPDTFVRTIYAGNALCTVKCD---EKVKVFSVRGTSFDAAATSGGSASS--EKA 188 + ++ D V T N V+ D + V ++R + F +G S + Sbjct: 119 VYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAP 178 Query: 189 SSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGAS 248 S S + ++++ + + ++T ++S GRG+ N + +LAD+ A + S Sbjct: 179 SVQSRSQNKDYVE--VGGGNDIDITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCS 236 Query: 249 RAAVDAGFVPNDMQVGQTGKIVAP-ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPI 307 DAG++P QVGQ+GK+V +LY+A+GISG+IQH+AGMK TI+A+N DP A I Sbjct: 237 APIADAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASI 296 Query: 308 FQVADYGIVADLFKVVPEMTEIL 330 F +A YGIVAD+F + E+ L Sbjct: 297 FTIAKYGIVADIFDIEEELKAQL 319 >1EFP-A nrPDB Length = 307 Score = 304 bits (779), Expect = 3e-83, Method: Composition-based stats. Identities = 167/310 (53%), Positives = 215/310 (69%), Gaps = 3/310 (0%) Query: 21 STLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQ 80 + L++ E N +L AA + G+V+ L AG A++ K+AG+AKVLVA+ Sbjct: 1 AVLLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAE 60 Query: 81 HDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKS 140 +Y L E LI+ +Y+HI A A+ KN++PRVAA L+V +SD+ AI Sbjct: 61 DALYGHRLAEPTAALIVGLAG--DYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILD 118 Query: 141 PDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEISEWL 200 DTF R IYAGNA+ VK + KVF++R SFDAA G + +E A++ P +S W+ Sbjct: 119 ADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETAAAADP-GLSSWV 177 Query: 201 DQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPND 260 ++ +SDRPELT A+ VVSGGRGL S E+F ++ +LAD+L AAVGASRAAVD+G+ PND Sbjct: 178 ADEVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPND 237 Query: 261 MQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLF 320 QVGQTGK+VAPELY+AVGISGAIQHLAGMKDSK IVAINKD EAPIFQ+ADYG+V DLF Sbjct: 238 WQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLF 297 Query: 321 KVVPEMTEIL 330 VVPE+T L Sbjct: 298 SVVPELTGKL 307 >5OW0-A nrPDB Length = 294 Score = 266 bits (681), Expect = 8e-72, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 142/250 (56%), Gaps = 3/250 (1%) Query: 84 YKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDT 143 L L + K+ Y I +A G L +A L +S++ AI T Sbjct: 48 LSDTLGANLGSSLSDLIKRERYELILLSTTAIGSGLAGPLAVSLGAPILSEVTAISPDLT 107 Query: 144 FVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEISEWLDQK 203 R++Y A+ K + V +++ F+AA G +A+ E P +I+ + + Sbjct: 108 IERSLYGSKAVARYKLESGPLVLTIKRKYFEAATLEGTTATEELP--VGPQKITLLEEIE 165 Query: 204 LTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQV 263 ++ P L A+VVV+GGRG+ SG+NF +L ++A L+ AVGASR AVD G++P Q+ Sbjct: 166 EERTGIP-LEDAEVVVTGGRGIGSGDNFSILKEIAGMLNGAVGASRGAVDEGWMPPGAQI 224 Query: 264 GQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVV 323 GQTGKIVAP +Y AVG+SGA QHLAG+ ++K ++AINKD EA IF+ A +GIV D K V Sbjct: 225 GQTGKIVAPTVYFAVGVSGASQHLAGISNAKCVIAINKDNEANIFKRARFGIVGDYKKAV 284 Query: 324 PEMTEILKKK 333 P + LK+ Sbjct: 285 PALINALKEN 294 >1M2H-A nrPDB Length = 249 Score = 30.9 bits (68), Expect = 0.93, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Query: 268 KIVAPELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKV 322 ++ ++ I G S +Q A + + I+ IN D E P+ +ADY + +V Sbjct: 174 EVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPD-ETPLTPIADYSLRGKAGEV 232 Query: 323 VPEMTEILKK 332 + E+ ++K Sbjct: 233 MDELVRHVRK 242 >6FAH-B nrPDB Length = 262 Score = 30.5 bits (67), Expect = 1.1, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 4/99 (4%) Query: 48 GGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQF-NYT 106 G EV + G C G + + + G + + A K+ Sbjct: 54 GTEVIVMTMGPPQASEMLRECLAMGADEAYLLSDRAFGGADTWATSATLAAGIKKVKKVD 113 Query: 107 HICAGASAFGKN---LLPRVAAKLEVAPISDIIAIKSPD 142 + AG A + + ++A +L++ ++ + IK D Sbjct: 114 LVLAGRQAIDGDTAQVGSQIAQRLKMPVVTYVEDIKIED 152 >2I5B-A nrPDB Length = 271 Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 5/118 (4%) Query: 124 AAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVR-----GTSFDAAAT 178 A K + P DII + + + + + C +V AT Sbjct: 77 AMKTGMLPTVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLAT 136 Query: 179 SGGSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYD 236 E + + E+ D L VV++GG LK + +LYD Sbjct: 137 VITPNLFEASQLSGMDELKTVDDMIEAAKKIHALGAQYVVITGGGKLKHEKAVDVLYD 194 >3GP8-A nrPDB Length = 574 Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 217 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQ-TGKI 269 VV++GG G K + DLA+ L VG A ++G+ TG+ Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKA-----ARRLGEVTGRT 255 >4WWV-A nrPDB Length = 394 Score = 28.5 bits (62), Expect = 4.3, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 17/52 (32%) Query: 99 TQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYA 150 GA + P VA ++V SD+ + + F R Y Sbjct: 234 LVATVQEEVGLKGAKTSAYGISPDVALAIDVTIASDVPGVAKSEWFTRLGYG 285 >2FHK-A nrPDB Length = 296 Score = 27.4 bits (59), Expect = 8.8, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 8/120 (6%) Query: 164 KVFSVRGTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSD--RPELTGAKVVVSG 221 + + ++FDA + S + +L + + + +V Sbjct: 97 VMTAPTASAFDAMPEAEKEDEDRVGYKLSFFGDGYQEEDELDGRKVWKIPVVEGEFIVED 156 Query: 222 GRGLKSGENFKLLYDLADQLHAAVGASRAAVDA------GFVPNDMQVGQTGKIVAPELY 275 G+ +G Y +A+ A + A+ AAVDA + P + + V + Y Sbjct: 157 SFGITTGVAGGNFYIMAESQPAGLQAAEAAVDAIKGVEGAYAPFPGGIVASASKVGSKQY 216 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.129 0.308 Lambda K H 0.267 0.0396 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,113,937 Number of Sequences: 36641 Number of extensions: 369750 Number of successful extensions: 1147 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 1103 Number of HSP's gapped (non-prelim): 38 length of query: 333 length of database: 10,336,785 effective HSP length: 98 effective length of query: 235 effective length of database: 6,745,967 effective search space: 1585302245 effective search space used: 1585302245 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 59 (27.4 bits)