BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P13686 (325 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2BQ8-X nrPDB 638 0.0 1QFC-A nrPDB 579 e-166 5UQ6-A nrPDB 567 e-162 3TGH-A nrPDB 72 4e-13 1KBP-A nrPDB 33 0.11 5HQN-A nrPDB 32 0.34 5FI9-A nrPDB 32 0.36 6C8Z-A nrPDB 32 0.47 3I45-A nrPDB 30 1.4 2NXF-A nrPDB 29 2.2 3IB8-A nrPDB 29 3.2 4OIW-A nrPDB 29 3.4 5LD1-A nrPDB 28 4.3 2HYP-A nrPDB 28 4.4 3JUL-A nrPDB 28 4.6 >2BQ8-X nrPDB Length = 304 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/304 (100%), Positives = 304/304 (100%) Query: 22 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI 81 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI Sbjct: 1 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI 60 Query: 82 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF 141 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF Sbjct: 61 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF 120 Query: 142 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL 201 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL Sbjct: 121 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL 180 Query: 202 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG 261 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG Sbjct: 181 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG 240 Query: 262 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR 321 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR Sbjct: 241 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR 300 Query: 322 RARP 325 RARP Sbjct: 301 RARP 304 >1QFC-A nrPDB Length = 306 Score = 579 bits (1492), Expect = e-166, Method: Compositional matrix adjust. Identities = 266/300 (88%), Positives = 285/300 (95%) Query: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKR 85 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI+GADFI+SLGDNFYFTGV D NDKR Sbjct: 7 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKR 66 Query: 86 FQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQ 145 FQETFEDVFSDR+LR +PWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSP+YRL FK+P+ Sbjct: 67 FQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVPR 126 Query: 146 TNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLVAGH 205 +N++VAIFMLDTV LCGNSDDF+SQQPE PRD+ +ARTQLSWLKKQLAAA+EDYVLVAGH Sbjct: 127 SNITVAIFMLDTVMLCGNSDDFVSQQPEMPRDLGVARTQLSWLKKQLAAAKEDYVLVAGH 186 Query: 206 YPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 265 YP+WSIAEHGPT CLVK LRPLLA YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD Sbjct: 187 YPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 246 Query: 266 PSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRRARP 325 PS RHQRKVPNGYLRFHYG+EDSLGGF YVEI SKEM++TY+EASGKSLFKT LPRR RP Sbjct: 247 PSVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFKTSLPRRPRP 306 >5UQ6-A nrPDB Length = 313 Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust. Identities = 265/302 (87%), Positives = 285/302 (94%) Query: 23 TPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDIN 82 TP LRFVAVGDWGGVPNAPFHTAREMANAK IA TV+ LGADFILSLGDNFYFTGV D Sbjct: 4 TPILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAK 63 Query: 83 DKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFK 142 DKRFQETFEDVFSD SLR VPW+VLAGNHDHLGNVSAQIAYSKISKRWNFPSP+YRL FK Sbjct: 64 DKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFK 123 Query: 143 IPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLV 202 IP++NVSVAIFMLDTVTLCGNSDDF+SQQPERPR++ LARTQL+W+KKQLAAA+EDYVLV Sbjct: 124 IPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVLV 183 Query: 203 AGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGN 262 AGHYPVWSIAEHGPTHCLVKQL PLL T+ VTAYLCGHDHNLQYLQDENG+G+VLSGAGN Sbjct: 184 AGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGN 243 Query: 263 FMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRR 322 FMDPSK+H RKVPNGYLRFH+G E+SLGGFAYVEI+ KEM+VTYIEASGKSLFKT+LPRR Sbjct: 244 FMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSVTYIEASGKSLFKTKLPRR 303 Query: 323 AR 324 AR Sbjct: 304 AR 305 >3TGH-A nrPDB Length = 342 Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 56/317 (17%) Query: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKR 85 LRF ++GDWG T ++ NAK + ++ FI+S G NF GV+ +ND Sbjct: 4 LRFASLGDWGK------DTKGQILNAKYFKQFIKNERVTFIVSPGSNF-IDGVKGLNDPA 56 Query: 86 FQETFEDVFSD-RSLRKVPWYVLAGNHDHLGNVSAQI-----------AYSKISK----- 128 ++ +EDV+S+ + +P++ + G D GN +AQ+ + I K Sbjct: 57 WKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQLLKGQGIYIEKNGETSIEKDADAT 116 Query: 129 ---RWNFPSPFYR--LHF---------KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPER 174 +W P+ +Y HF K +++ A +DT L N P + Sbjct: 117 NYPKWIMPNYWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFIDTWVLSSNF-------PYK 169 Query: 175 PRDVKLARTQLSWLKKQLAAARE--DYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYG 232 K+ + LK QL+ A++ D+++V G P++S + L L PLL Sbjct: 170 ----KIHEKAWNDLKSQLSVAKKIADFIIVVGDQPIYSSGYSRGSSYLAYYLLPLLKDAE 225 Query: 233 VTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYG---TEDSL 289 V Y+ GHD+N++ ++D N + ++ G+G+ M K + + + G E S Sbjct: 226 VDLYISGHDNNMEVIED-NDMAHITCGSGS-MSQGKSGMKNSKSLFFSSDIGFCVHELSN 283 Query: 290 GGFAYVEISSKEMTVTY 306 G +SSK+ V Y Sbjct: 284 NGIVTKFVSSKKGEVIY 300 >1KBP-A nrPDB Length = 432 Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 36/179 (20%) Query: 94 FSDRSLRKVPWYVLAGNH--DHLGNVSAQIAYSKISKRWNFP-------SPFYRLHFKIP 144 F++RS+ PW AGNH + ++ + S R++ P SPF+ + I Sbjct: 185 FTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFW---YSIK 241 Query: 145 QTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAARED---YVL 201 + S I +L + + G Q +WLKK+L + +++ Sbjct: 242 R--ASAHIIVLSSYSAYGR-----------------GTPQYTWLKKELRKVKRSETPWLI 282 Query: 202 VAGHYPVWSIAEHG--PTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLS 258 V H P+++ H + + Y V GH H + + + + Y ++ Sbjct: 283 VLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKIT 341 >5HQN-A nrPDB Length = 473 Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 52/253 (20%) Query: 99 LRKVPWYVLAGNHDHL-----------GNVSAQIAYSKISKRWNFPSPFYRLH------F 141 L VP Y GNH+ GN S+Q Y ++K W P LH F Sbjct: 151 LGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGF 210 Query: 142 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAA--REDY 199 + + L+ + C + +L P QL WL ++L AA R D Sbjct: 211 YALTPRPGLRLISLN-MNFCSRENFWLLINSTDPAG------QLQWLVEELQAAENRGDK 263 Query: 200 VLVAGHYPVWSIAEHGPTHCLVK---QLRPLLATYGVT--AYLCGHDH--NLQYLQDENG 252 V + GH P P HCL ++A Y T GH H + DE Sbjct: 264 VHIIGHIP--------PGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEET 315 Query: 253 VGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEA--- 309 + L+ A F+ PS + GY Y + + G ++V + + + +A Sbjct: 316 LSRPLAVA--FLAPSATTFINLNPGYRV--YQIDGNYPGSSHVVLDHETYILNLTQANAA 371 Query: 310 ----SGKSLFKTR 318 S K L++ R Sbjct: 372 GGTPSWKRLYRAR 384 >5FI9-A nrPDB Length = 538 Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 52/141 (36%), Gaps = 34/141 (24%) Query: 99 LRKVPWYVLAGNHDHL-----------GNVSAQIAYSKISKRWNFPSPFYRLH------F 141 L VP Y GNH+ GN S+Q Y ++K W P LH F Sbjct: 232 LGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGF 291 Query: 142 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAA--REDY 199 + + L+ + C + +L P QL WL ++L AA R D Sbjct: 292 YALTPRPGLRLISLN-MNFCSRENFWLLINSTDPAG------QLQWLVEELQAAENRGDK 344 Query: 200 VLVAGHYPVWSIAEHGPTHCL 220 V + GH P P HCL Sbjct: 345 VHIIGHIP--------PGHCL 357 >6C8Z-A nrPDB Length = 511 Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Query: 70 GDNFYFTGVQDIN--DKRFQETFEDVFSDRSLRKVPWYVLAGNHD 112 G+N YF G DI+ +KR+ E + D+ +SL+KV +A N + Sbjct: 13 GENLYFQGHMDISEWEKRYNEAYSDI--SKSLKKVKGIFVAYNSN 55 >3I45-A nrPDB Length = 387 Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 23/95 (24%) Query: 188 LKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRP--------------------- 226 K+ L AAR + VA +P + GPT ++Q P Sbjct: 162 FKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRV 221 Query: 227 --LLATYGVTAYLCGHDHNLQYLQDENGVGYVLSG 259 L A V + L G L L+DE G++++G Sbjct: 222 RGLFAGRQVVSMLTGEPEYLNPLKDEAPEGWIVTG 256 >2NXF-A nrPDB Length = 322 Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 8/83 (9%) Query: 180 LARTQLSWLKKQLAAA--REDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATY----GV 233 + QL WL L + +++ VL+ H PV A P CL +L+ V Sbjct: 201 FSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAA-DPI-CLAWNHEAVLSVLRSHQSV 258 Query: 234 TAYLCGHDHNLQYLQDENGVGYV 256 ++ GHDH+ D +G ++ Sbjct: 259 LCFIAGHDHDGGRCTDSSGAQHI 281 >3IB8-A nrPDB Length = 330 Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 183 TQLSWLKKQLAAAREDYVLVAGHY-PVWSIAEHGPTHCLVKQ--LRPLLATYGVTAYLCG 239 +QL WL ++LA D ++A H+ P+ S+ + T L Q L +L V A L G Sbjct: 159 SQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAG 218 Query: 240 HDH 242 H H Sbjct: 219 HLH 221 >4OIW-A nrPDB Length = 431 Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 19/28 (67%) Query: 36 GVPNAPFHTAREMANAKEIARTVQILGA 63 G+P H+ RE+A + ++A V++LGA Sbjct: 396 GLPTFAMHSIRELAGSHDLAHLVKVLGA 423 >5LD1-A nrPDB Length = 287 Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 80 DINDKR----FQETFEDVFSDRSLRKVPWYVLAGNHDHLGN 116 D+ D+R +QE +E + S PWYV+ N + N Sbjct: 216 DLEDRRLWDRYQEAYEAAIRETSTEYAPWYVIPANKNWYRN 256 >2HYP-A nrPDB Length = 280 Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 183 TQLSWLKKQLAAAREDYVLVAGHY-PVWSIAEHGPTHCLVKQ--LRPLLATYGVTAYLCG 239 +QL WL ++LA D ++A H+ P+ S+ + T L Q L +L V A L G Sbjct: 149 SQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAG 208 Query: 240 HDH 242 H H Sbjct: 209 HLH 211 >3JUL-A nrPDB Length = 320 Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 26/125 (20%) Query: 180 LARTQLSWLKKQLA--AAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYL 237 +++T L KQ+A +ED V++AG P H + + LL T T Sbjct: 115 VSQTNKDNLLKQIAKKVKKEDMVVIAGSPP---------PHYTLSDFKELLRTVKATGAF 165 Query: 238 CGHDHNLQYLQ------------DENGVGYVLSGAGNFMDPSKRH-QRKVPNGYLRFHYG 284 G D++ +YL +E+ V +L N ++ + R K+P YL G Sbjct: 166 LGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIRTLAEKIP--YLVVSLG 223 Query: 285 TEDSL 289 + S+ Sbjct: 224 AKGSI 228 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2BQ8-X nrPDB 568 e-163 1QFC-A nrPDB 556 e-159 5UQ6-A nrPDB 555 e-158 3TGH-A nrPDB 320 7e-88 Sequences not found previously or not previously below threshold: 1KBP-A nrPDB 40 0.001 1XZW-A nrPDB 39 0.004 2Q8U-A nrPDB 38 0.005 2NXF-A nrPDB 38 0.005 3THO-B nrPDB 35 0.051 5LD1-A nrPDB 34 0.074 3JUL-A nrPDB 34 0.11 4HZ5-A nrPDB 31 0.58 6B18-A nrPDB 30 1.3 4MOP-A nrPDB 30 1.7 1R1D-A nrPDB 30 1.8 5HSQ-A nrPDB 30 1.9 3X0U-A nrPDB 29 2.4 4WZY-A nrPDB 29 3.1 5YH2-A nrPDB 29 4.4 3ND6-A nrPDB 27 9.1 >2BQ8-X nrPDB Length = 304 Score = 568 bits (1465), Expect = e-163, Method: Composition-based stats. Identities = 304/304 (100%), Positives = 304/304 (100%) Query: 22 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI 81 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI Sbjct: 1 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI 60 Query: 82 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF 141 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF Sbjct: 61 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF 120 Query: 142 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL 201 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL Sbjct: 121 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL 180 Query: 202 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG 261 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG Sbjct: 181 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG 240 Query: 262 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR 321 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR Sbjct: 241 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR 300 Query: 322 RARP 325 RARP Sbjct: 301 RARP 304 >1QFC-A nrPDB Length = 306 Score = 556 bits (1433), Expect = e-159, Method: Composition-based stats. Identities = 266/300 (88%), Positives = 285/300 (95%) Query: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKR 85 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI+GADFI+SLGDNFYFTGV D NDKR Sbjct: 7 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKR 66 Query: 86 FQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQ 145 FQETFEDVFSDR+LR +PWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSP+YRL FK+P+ Sbjct: 67 FQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVPR 126 Query: 146 TNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLVAGH 205 +N++VAIFMLDTV LCGNSDDF+SQQPE PRD+ +ARTQLSWLKKQLAAA+EDYVLVAGH Sbjct: 127 SNITVAIFMLDTVMLCGNSDDFVSQQPEMPRDLGVARTQLSWLKKQLAAAKEDYVLVAGH 186 Query: 206 YPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 265 YP+WSIAEHGPT CLVK LRPLLA YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD Sbjct: 187 YPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 246 Query: 266 PSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRRARP 325 PS RHQRKVPNGYLRFHYG+EDSLGGF YVEI SKEM++TY+EASGKSLFKT LPRR RP Sbjct: 247 PSVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFKTSLPRRPRP 306 >5UQ6-A nrPDB Length = 313 Score = 555 bits (1429), Expect = e-158, Method: Composition-based stats. Identities = 265/302 (87%), Positives = 285/302 (94%) Query: 23 TPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDIN 82 TP LRFVAVGDWGGVPNAPFHTAREMANAK IA TV+ LGADFILSLGDNFYFTGV D Sbjct: 4 TPILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAK 63 Query: 83 DKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFK 142 DKRFQETFEDVFSD SLR VPW+VLAGNHDHLGNVSAQIAYSKISKRWNFPSP+YRL FK Sbjct: 64 DKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFK 123 Query: 143 IPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLV 202 IP++NVSVAIFMLDTVTLCGNSDDF+SQQPERPR++ LARTQL+W+KKQLAAA+EDYVLV Sbjct: 124 IPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVLV 183 Query: 203 AGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGN 262 AGHYPVWSIAEHGPTHCLVKQL PLL T+ VTAYLCGHDHNLQYLQDENG+G+VLSGAGN Sbjct: 184 AGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGN 243 Query: 263 FMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRR 322 FMDPSK+H RKVPNGYLRFH+G E+SLGGFAYVEI+ KEM+VTYIEASGKSLFKT+LPRR Sbjct: 244 FMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSVTYIEASGKSLFKTKLPRR 303 Query: 323 AR 324 AR Sbjct: 304 AR 305 >3TGH-A nrPDB Length = 342 Score = 320 bits (819), Expect = 7e-88, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 56/317 (17%) Query: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKR 85 LRF ++GDWG T ++ NAK + ++ FI+S G NF GV+ +ND Sbjct: 4 LRFASLGDWGK------DTKGQILNAKYFKQFIKNERVTFIVSPGSNF-IDGVKGLNDPA 56 Query: 86 FQETFEDVFSD-RSLRKVPWYVLAGNHDHLGNVSAQI-----------AYSKISK----- 128 ++ +EDV+S+ + +P++ + G D GN +AQ+ + I K Sbjct: 57 WKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQLLKGQGIYIEKNGETSIEKDADAT 116 Query: 129 ---RWNFPSPFYR--LHF---------KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPER 174 +W P+ +Y HF K +++ A +DT L N P + Sbjct: 117 NYPKWIMPNYWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFIDTWVLSSNF-------PYK 169 Query: 175 PRDVKLARTQLSWLKKQLAAARE--DYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYG 232 K+ + LK QL+ A++ D+++V G P++S + L L PLL Sbjct: 170 ----KIHEKAWNDLKSQLSVAKKIADFIIVVGDQPIYSSGYSRGSSYLAYYLLPLLKDAE 225 Query: 233 VTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYG---TEDSL 289 V Y+ GHD+N++ ++D N + ++ G+G+ M K + + + G E S Sbjct: 226 VDLYISGHDNNMEVIED-NDMAHITCGSGS-MSQGKSGMKNSKSLFFSSDIGFCVHELSN 283 Query: 290 GGFAYVEISSKEMTVTY 306 G +SSK+ V Y Sbjct: 284 NGIVTKFVSSKKGEVIY 300 >1KBP-A nrPDB Length = 432 Score = 40.5 bits (93), Expect = 0.001, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 66 ILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSK 125 +L +GD Y + ++ R+ F++RS+ PW AGNH+ + +I ++ Sbjct: 159 VLFVGDLSYADRYPNHDNVRWDTWGR--FTERSVAYQPWIWTAGNHEI--EFAPEINETE 214 Query: 126 ISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQL 185 K + S Y + ++ Q S + F + S Q Sbjct: 215 PFKPF---SYRYHVPYEASQ---STSPFWYSIKRASAHIIVLSSYSAY-----GRGTPQY 263 Query: 186 SWLKKQLAAARED---YVLVAGHYPVWSIAEHG--PTHCLVKQLRPLLATYGVTAYLCGH 240 +WLKK+L + +++V H P+++ H + + Y V GH Sbjct: 264 TWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGH 323 Query: 241 DHNLQYLQDENGVGY 255 H + + + + Y Sbjct: 324 VHAYERSERVSNIAY 338 >1XZW-A nrPDB Length = 426 Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 57/180 (31%), Gaps = 44/180 (24%) Query: 94 FSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQ-------- 145 FS+RS+ PW AGNH+ + + I + P + + P Sbjct: 184 FSERSVAYQPWIWTAGNHEI--DYAPDIGEYQ-------PFVPFTNRYPTPHEASGSGDP 234 Query: 146 -----TNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAARED-- 198 S I +L + F+ P Q W +L Sbjct: 235 LWYAIKRASAHIIVL------SSYSGFVKYSP-----------QYKWFTSELEKVNRSET 277 Query: 199 -YVLVAGHYPVWSI--AEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGY 255 +++V H P+++ A + + P Y V GH H+ + + + V Y Sbjct: 278 PWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAY 337 >2Q8U-A nrPDB Length = 336 Score = 38.2 bits (87), Expect = 0.005, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 98/296 (33%), Gaps = 64/296 (21%) Query: 26 LRFVAVGDW-----GGVPNAPFHTAREMANA-KEIARTVQILGADFILSLGD------NF 73 L+ + DW + P E+ A ++ + D IL GD N Sbjct: 19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 78 Query: 74 YFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFP 133 + D+ D + R +R P VL GNHD G + IS F Sbjct: 79 SVVALHDLLD----------YLKRMMRTAPVVVLPGNHDWKGLKLFGNFVTSISSDITFV 128 Query: 134 SPF--YRLHFKIPQTNVSVAIFMLD-TVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKK 190 F + K Q + D + L N DF ++L+ L + Sbjct: 129 MSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRF----------FLESRLNKLYE 178 Query: 191 QLAAAREDYVLVAGHYPV-----WSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQ 245 + A +ED+ + GH+ V ++ E G + + L P + Y GH H+ + Sbjct: 179 E-ALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAA----LGHIHSFR 233 Query: 246 YLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKE 301 +Q K+ P +R +G E G +VE+ E Sbjct: 234 EIQ-------------------KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGE 270 >2NXF-A nrPDB Length = 322 Score = 38.2 bits (87), Expect = 0.005, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 8/94 (8%) Query: 170 QQPERPRDVKLARTQLSWLKKQLAAA--REDYVLVAGHYPVWSIAEHGPTHCLVKQ---L 224 +Q + + QL WL L + +++ VL+ H PV A CL + Sbjct: 191 EQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCA--ADPICLAWNHEAV 248 Query: 225 RPLLATYG-VTAYLCGHDHNLQYLQDENGVGYVL 257 +L ++ V ++ GHDH+ D +G ++ Sbjct: 249 LSVLRSHQSVLCFIAGHDHDGGRCTDSSGAQHIT 282 >3THO-B nrPDB Length = 379 Score = 34.7 bits (78), Expect = 0.051, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 97/296 (32%), Gaps = 64/296 (21%) Query: 26 LRFVAVGDW-----GGVPNAPFHTAREMANA-KEIARTVQILGADFILSLGD------NF 73 ++ + DW + P E+ A ++ + D IL GD N Sbjct: 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 60 Query: 74 YFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFP 133 + D+ D + R +R P VL GN D G + IS F Sbjct: 61 SVVALHDLLD----------YLKRMMRTAPVVVLPGNQDWKGLKLFGNFVTSISSDITFV 110 Query: 134 SPF--YRLHFKIPQTNVSVAIFMLD-TVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKK 190 F + K Q + D + L N DF ++L+ L + Sbjct: 111 MSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRF----------FLESRLNKLYE 160 Query: 191 QLAAAREDYVLVAGHYPV-----WSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQ 245 + A +ED+ + GH+ V ++ E G + + L P + Y GH H+ + Sbjct: 161 E-ALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAA----LGHIHSFR 215 Query: 246 YLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKE 301 +Q K+ P +R +G E G +VE+ E Sbjct: 216 EIQ-------------------KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGE 252 >5LD1-A nrPDB Length = 287 Score = 34.3 bits (77), Expect = 0.074, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Query: 80 DINDKR----FQETFEDVFSDRSLRKVPWYVLAGNHDHLGNV 117 D+ D+R +QE +E + S PWYV+ N + N Sbjct: 216 DLEDRRLWDRYQEAYEAAIRETSTEYAPWYVIPANKNWYRNW 257 >3JUL-A nrPDB Length = 320 Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 29/139 (20%) Query: 180 LARTQLSWLKKQLA--AAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYL 237 +++T L KQ+A +ED V++AG P H + + LL T T Sbjct: 115 VSQTNKDNLLKQIAKKVKKEDMVVIAG---------SPPPHYTLSDFKELLRTVKATGAF 165 Query: 238 CGHDHNLQYLQ------------DENGVGYVLSGAGNFMDPSKRHQ-RKVPNGYLRFHYG 284 G D++ +YL +E+ V +L N ++ + R K+P YL G Sbjct: 166 LGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIRTLAEKIP--YLVVSLG 223 Query: 285 TEDSL---GGFAYVEISSK 300 + S+ G Y I K Sbjct: 224 AKGSICAHNGKLYQVIPPK 242 >4HZ5-A nrPDB Length = 216 Score = 31.2 bits (69), Expect = 0.58, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 5/85 (5%) Query: 211 IAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQY-LQDENGVGYVLSGAGNFMDPSKR 269 + H LV ++ V L G+ + + +Q +N + SG G Sbjct: 16 STDSRGLHHLVYEIV----DNAVDEALSGYGNEINVTIQKDNSICVADSGRGMPTGMHAS 71 Query: 270 HQRKVPNGYLRFHYGTEDSLGGFAY 294 V + H G + GG+ Sbjct: 72 GIPTVEVIFTVLHAGGKFGQGGYKT 96 >6B18-A nrPDB Length = 308 Score = 30.1 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 84 KRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGN-VSAQIAYSKISK-RWNFPS 134 K ++ +ED+ ++ S ++ PW+V+ + + A+I +++ K FP+ Sbjct: 233 KDYRNAYEDMLANTSTKQAPWFVIPADDKWFTRLLIAEIICTELEKLNLTFPT 285 >4MOP-A nrPDB Length = 633 Score = 29.7 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%) Query: 125 KISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFL 168 KI+ +N P P + F +T+ M D + FL Sbjct: 490 KITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFL 533 >1R1D-A nrPDB Length = 247 Score = 29.7 bits (65), Expect = 1.8, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 84 KRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNV-SAQIAYSKIS 127 K QE DV + L P +V+ HD + N SA I Y++I Sbjct: 165 KALQELIADVRAHLDLVYAPTFVVQARHDEMINPDSANIIYNEIE 209 >5HSQ-A nrPDB Length = 503 Score = 29.7 bits (65), Expect = 1.9, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 13/102 (12%) Query: 184 QLSWLKKQLAA-AREDYVLVAGHYPVWSIAEH-----GPTHCLVKQLRP-------LLAT 230 + +W +K+L A LV + E G L K L L T Sbjct: 82 RYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRT 141 Query: 231 YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKRHQR 272 + + + GHD L Y + G+V++ AG+ PS R Sbjct: 142 AQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLR 183 >3X0U-A nrPDB Length = 446 Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Query: 193 AAAREDYVLVAGHYPVWSIA----EHGPTHCLVKQLRPLLATY---GVTAYLCGHDHNLQ 245 AAA++DY+ + HY + E L + PLLAT +T CG D+ + Sbjct: 123 AAAKDDYIGLVTHYLIGLEENFKRELDGDEWLGYAILPLLATTVSLQITYMACGLDYKDE 182 Query: 246 Y 246 + Sbjct: 183 F 183 >4WZY-A nrPDB Length = 454 Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%) Query: 164 SDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLVAGHYP 207 + PE+ D +LA +W+ + AA Y VAG P Sbjct: 356 YQKLVELAPEQDADGRLADRARNWVDRNSAAFCAGYAAVAGDDP 399 >5YH2-A nrPDB Length = 467 Score = 28.5 bits (62), Expect = 4.4, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 22/119 (18%) Query: 44 TAREMAN-AKEIARTVQIL--GADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLR 100 T + N KEI + + F +S N F F+ Sbjct: 219 TVGRIVNVTKEILEVTKNEILQSVFFVSPASNVCF------------------FAKCPYM 260 Query: 101 KVPWYVLAGN-HDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV 158 Y + G H G++SA + ++ R + P+P+ R + + V DTV Sbjct: 261 CKTEYAVCGKPHLLEGSLSAFLPSLNLAPRLSVPNPWIRSYTLAGKEEWEVNPLYCDTV 319 >3ND6-A nrPDB Length = 171 Score = 27.4 bits (59), Expect = 9.1, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 43 HTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQE 88 +EM N + I + Q L + SLG NF G++++ D +++ Sbjct: 57 EATKEMPNVRVIMQETQ-LTVESAKSLGANFLIRGIRNVKDYEYEK 101 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.131 0.372 Lambda K H 0.267 0.0401 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,809,487 Number of Sequences: 36641 Number of extensions: 507690 Number of successful extensions: 1305 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 1275 Number of HSP's gapped (non-prelim): 40 length of query: 325 length of database: 10,336,785 effective HSP length: 97 effective length of query: 228 effective length of database: 6,782,608 effective search space: 1546434624 effective search space used: 1546434624 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 59 (27.4 bits)