BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P13686
(325 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
2BQ8-X nrPDB 638 0.0
1QFC-A nrPDB 579 e-166
5UQ6-A nrPDB 567 e-162
3TGH-A nrPDB 72 4e-13
1KBP-A nrPDB 33 0.11
5HQN-A nrPDB 32 0.34
5FI9-A nrPDB 32 0.36
6C8Z-A nrPDB 32 0.47
3I45-A nrPDB 30 1.4
2NXF-A nrPDB 29 2.2
3IB8-A nrPDB 29 3.2
4OIW-A nrPDB 29 3.4
5LD1-A nrPDB 28 4.3
2HYP-A nrPDB 28 4.4
3JUL-A nrPDB 28 4.6
>2BQ8-X nrPDB
Length = 304
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 22 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI 81
ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI
Sbjct: 1 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI 60
Query: 82 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF 141
NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF
Sbjct: 61 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF 120
Query: 142 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL 201
KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL
Sbjct: 121 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL 180
Query: 202 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG 261
VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG
Sbjct: 181 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG 240
Query: 262 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR 321
NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR
Sbjct: 241 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR 300
Query: 322 RARP 325
RARP
Sbjct: 301 RARP 304
>1QFC-A nrPDB
Length = 306
Score = 579 bits (1492), Expect = e-166, Method: Compositional matrix adjust.
Identities = 266/300 (88%), Positives = 285/300 (95%)
Query: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKR 85
LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI+GADFI+SLGDNFYFTGV D NDKR
Sbjct: 7 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKR 66
Query: 86 FQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQ 145
FQETFEDVFSDR+LR +PWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSP+YRL FK+P+
Sbjct: 67 FQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVPR 126
Query: 146 TNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLVAGH 205
+N++VAIFMLDTV LCGNSDDF+SQQPE PRD+ +ARTQLSWLKKQLAAA+EDYVLVAGH
Sbjct: 127 SNITVAIFMLDTVMLCGNSDDFVSQQPEMPRDLGVARTQLSWLKKQLAAAKEDYVLVAGH 186
Query: 206 YPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 265
YP+WSIAEHGPT CLVK LRPLLA YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD
Sbjct: 187 YPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 246
Query: 266 PSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRRARP 325
PS RHQRKVPNGYLRFHYG+EDSLGGF YVEI SKEM++TY+EASGKSLFKT LPRR RP
Sbjct: 247 PSVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFKTSLPRRPRP 306
>5UQ6-A nrPDB
Length = 313
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/302 (87%), Positives = 285/302 (94%)
Query: 23 TPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDIN 82
TP LRFVAVGDWGGVPNAPFHTAREMANAK IA TV+ LGADFILSLGDNFYFTGV D
Sbjct: 4 TPILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAK 63
Query: 83 DKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFK 142
DKRFQETFEDVFSD SLR VPW+VLAGNHDHLGNVSAQIAYSKISKRWNFPSP+YRL FK
Sbjct: 64 DKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFK 123
Query: 143 IPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLV 202
IP++NVSVAIFMLDTVTLCGNSDDF+SQQPERPR++ LARTQL+W+KKQLAAA+EDYVLV
Sbjct: 124 IPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVLV 183
Query: 203 AGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGN 262
AGHYPVWSIAEHGPTHCLVKQL PLL T+ VTAYLCGHDHNLQYLQDENG+G+VLSGAGN
Sbjct: 184 AGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGN 243
Query: 263 FMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRR 322
FMDPSK+H RKVPNGYLRFH+G E+SLGGFAYVEI+ KEM+VTYIEASGKSLFKT+LPRR
Sbjct: 244 FMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSVTYIEASGKSLFKTKLPRR 303
Query: 323 AR 324
AR
Sbjct: 304 AR 305
>3TGH-A nrPDB
Length = 342
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 56/317 (17%)
Query: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKR 85
LRF ++GDWG T ++ NAK + ++ FI+S G NF GV+ +ND
Sbjct: 4 LRFASLGDWGK------DTKGQILNAKYFKQFIKNERVTFIVSPGSNF-IDGVKGLNDPA 56
Query: 86 FQETFEDVFSD-RSLRKVPWYVLAGNHDHLGNVSAQI-----------AYSKISK----- 128
++ +EDV+S+ + +P++ + G D GN +AQ+ + I K
Sbjct: 57 WKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQLLKGQGIYIEKNGETSIEKDADAT 116
Query: 129 ---RWNFPSPFYR--LHF---------KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPER 174
+W P+ +Y HF K +++ A +DT L N P +
Sbjct: 117 NYPKWIMPNYWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFIDTWVLSSNF-------PYK 169
Query: 175 PRDVKLARTQLSWLKKQLAAARE--DYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYG 232
K+ + LK QL+ A++ D+++V G P++S + L L PLL
Sbjct: 170 ----KIHEKAWNDLKSQLSVAKKIADFIIVVGDQPIYSSGYSRGSSYLAYYLLPLLKDAE 225
Query: 233 VTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYG---TEDSL 289
V Y+ GHD+N++ ++D N + ++ G+G+ M K + + + G E S
Sbjct: 226 VDLYISGHDNNMEVIED-NDMAHITCGSGS-MSQGKSGMKNSKSLFFSSDIGFCVHELSN 283
Query: 290 GGFAYVEISSKEMTVTY 306
G +SSK+ V Y
Sbjct: 284 NGIVTKFVSSKKGEVIY 300
>1KBP-A nrPDB
Length = 432
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 36/179 (20%)
Query: 94 FSDRSLRKVPWYVLAGNH--DHLGNVSAQIAYSKISKRWNFP-------SPFYRLHFKIP 144
F++RS+ PW AGNH + ++ + S R++ P SPF+ + I
Sbjct: 185 FTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFW---YSIK 241
Query: 145 QTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAARED---YVL 201
+ S I +L + + G Q +WLKK+L + +++
Sbjct: 242 R--ASAHIIVLSSYSAYGR-----------------GTPQYTWLKKELRKVKRSETPWLI 282
Query: 202 VAGHYPVWSIAEHG--PTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLS 258
V H P+++ H + + Y V GH H + + + + Y ++
Sbjct: 283 VLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKIT 341
>5HQN-A nrPDB
Length = 473
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 52/253 (20%)
Query: 99 LRKVPWYVLAGNHDHL-----------GNVSAQIAYSKISKRWNFPSPFYRLH------F 141
L VP Y GNH+ GN S+Q Y ++K W P LH F
Sbjct: 151 LGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGF 210
Query: 142 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAA--REDY 199
+ + L+ + C + +L P QL WL ++L AA R D
Sbjct: 211 YALTPRPGLRLISLN-MNFCSRENFWLLINSTDPAG------QLQWLVEELQAAENRGDK 263
Query: 200 VLVAGHYPVWSIAEHGPTHCLVK---QLRPLLATYGVT--AYLCGHDH--NLQYLQDENG 252
V + GH P P HCL ++A Y T GH H + DE
Sbjct: 264 VHIIGHIP--------PGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEET 315
Query: 253 VGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEA--- 309
+ L+ A F+ PS + GY Y + + G ++V + + + +A
Sbjct: 316 LSRPLAVA--FLAPSATTFINLNPGYRV--YQIDGNYPGSSHVVLDHETYILNLTQANAA 371
Query: 310 ----SGKSLFKTR 318
S K L++ R
Sbjct: 372 GGTPSWKRLYRAR 384
>5FI9-A nrPDB
Length = 538
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 52/141 (36%), Gaps = 34/141 (24%)
Query: 99 LRKVPWYVLAGNHDHL-----------GNVSAQIAYSKISKRWNFPSPFYRLH------F 141
L VP Y GNH+ GN S+Q Y ++K W P LH F
Sbjct: 232 LGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGF 291
Query: 142 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAA--REDY 199
+ + L+ + C + +L P QL WL ++L AA R D
Sbjct: 292 YALTPRPGLRLISLN-MNFCSRENFWLLINSTDPAG------QLQWLVEELQAAENRGDK 344
Query: 200 VLVAGHYPVWSIAEHGPTHCL 220
V + GH P P HCL
Sbjct: 345 VHIIGHIP--------PGHCL 357
>6C8Z-A nrPDB
Length = 511
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 70 GDNFYFTGVQDIN--DKRFQETFEDVFSDRSLRKVPWYVLAGNHD 112
G+N YF G DI+ +KR+ E + D+ +SL+KV +A N +
Sbjct: 13 GENLYFQGHMDISEWEKRYNEAYSDI--SKSLKKVKGIFVAYNSN 55
>3I45-A nrPDB
Length = 387
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 23/95 (24%)
Query: 188 LKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRP--------------------- 226
K+ L AAR + VA +P + GPT ++Q P
Sbjct: 162 FKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRV 221
Query: 227 --LLATYGVTAYLCGHDHNLQYLQDENGVGYVLSG 259
L A V + L G L L+DE G++++G
Sbjct: 222 RGLFAGRQVVSMLTGEPEYLNPLKDEAPEGWIVTG 256
>2NXF-A nrPDB
Length = 322
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 180 LARTQLSWLKKQLAAA--REDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATY----GV 233
+ QL WL L + +++ VL+ H PV A P CL +L+ V
Sbjct: 201 FSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAA-DPI-CLAWNHEAVLSVLRSHQSV 258
Query: 234 TAYLCGHDHNLQYLQDENGVGYV 256
++ GHDH+ D +G ++
Sbjct: 259 LCFIAGHDHDGGRCTDSSGAQHI 281
>3IB8-A nrPDB
Length = 330
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 183 TQLSWLKKQLAAAREDYVLVAGHY-PVWSIAEHGPTHCLVKQ--LRPLLATYGVTAYLCG 239
+QL WL ++LA D ++A H+ P+ S+ + T L Q L +L V A L G
Sbjct: 159 SQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAG 218
Query: 240 HDH 242
H H
Sbjct: 219 HLH 221
>4OIW-A nrPDB
Length = 431
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 36 GVPNAPFHTAREMANAKEIARTVQILGA 63
G+P H+ RE+A + ++A V++LGA
Sbjct: 396 GLPTFAMHSIRELAGSHDLAHLVKVLGA 423
>5LD1-A nrPDB
Length = 287
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 80 DINDKR----FQETFEDVFSDRSLRKVPWYVLAGNHDHLGN 116
D+ D+R +QE +E + S PWYV+ N + N
Sbjct: 216 DLEDRRLWDRYQEAYEAAIRETSTEYAPWYVIPANKNWYRN 256
>2HYP-A nrPDB
Length = 280
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 183 TQLSWLKKQLAAAREDYVLVAGHY-PVWSIAEHGPTHCLVKQ--LRPLLATYGVTAYLCG 239
+QL WL ++LA D ++A H+ P+ S+ + T L Q L +L V A L G
Sbjct: 149 SQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAG 208
Query: 240 HDH 242
H H
Sbjct: 209 HLH 211
>3JUL-A nrPDB
Length = 320
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 26/125 (20%)
Query: 180 LARTQLSWLKKQLA--AAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYL 237
+++T L KQ+A +ED V++AG P H + + LL T T
Sbjct: 115 VSQTNKDNLLKQIAKKVKKEDMVVIAGSPP---------PHYTLSDFKELLRTVKATGAF 165
Query: 238 CGHDHNLQYLQ------------DENGVGYVLSGAGNFMDPSKRH-QRKVPNGYLRFHYG 284
G D++ +YL +E+ V +L N ++ + R K+P YL G
Sbjct: 166 LGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIRTLAEKIP--YLVVSLG 223
Query: 285 TEDSL 289
+ S+
Sbjct: 224 AKGSI 228
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
2BQ8-X nrPDB 568 e-163
1QFC-A nrPDB 556 e-159
5UQ6-A nrPDB 555 e-158
3TGH-A nrPDB 320 7e-88
Sequences not found previously or not previously below threshold:
1KBP-A nrPDB 40 0.001
1XZW-A nrPDB 39 0.004
2Q8U-A nrPDB 38 0.005
2NXF-A nrPDB 38 0.005
3THO-B nrPDB 35 0.051
5LD1-A nrPDB 34 0.074
3JUL-A nrPDB 34 0.11
4HZ5-A nrPDB 31 0.58
6B18-A nrPDB 30 1.3
4MOP-A nrPDB 30 1.7
1R1D-A nrPDB 30 1.8
5HSQ-A nrPDB 30 1.9
3X0U-A nrPDB 29 2.4
4WZY-A nrPDB 29 3.1
5YH2-A nrPDB 29 4.4
3ND6-A nrPDB 27 9.1
>2BQ8-X nrPDB
Length = 304
Score = 568 bits (1465), Expect = e-163, Method: Composition-based stats.
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 22 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI 81
ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI
Sbjct: 1 ATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDI 60
Query: 82 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF 141
NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF
Sbjct: 61 NDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHF 120
Query: 142 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL 201
KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL
Sbjct: 121 KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVL 180
Query: 202 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG 261
VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG
Sbjct: 181 VAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAG 240
Query: 262 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR 321
NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR
Sbjct: 241 NFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPR 300
Query: 322 RARP 325
RARP
Sbjct: 301 RARP 304
>1QFC-A nrPDB
Length = 306
Score = 556 bits (1433), Expect = e-159, Method: Composition-based stats.
Identities = 266/300 (88%), Positives = 285/300 (95%)
Query: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKR 85
LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI+GADFI+SLGDNFYFTGV D NDKR
Sbjct: 7 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKR 66
Query: 86 FQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQ 145
FQETFEDVFSDR+LR +PWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSP+YRL FK+P+
Sbjct: 67 FQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKVPR 126
Query: 146 TNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLVAGH 205
+N++VAIFMLDTV LCGNSDDF+SQQPE PRD+ +ARTQLSWLKKQLAAA+EDYVLVAGH
Sbjct: 127 SNITVAIFMLDTVMLCGNSDDFVSQQPEMPRDLGVARTQLSWLKKQLAAAKEDYVLVAGH 186
Query: 206 YPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 265
YP+WSIAEHGPT CLVK LRPLLA YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD
Sbjct: 187 YPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 246
Query: 266 PSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRRARP 325
PS RHQRKVPNGYLRFHYG+EDSLGGF YVEI SKEM++TY+EASGKSLFKT LPRR RP
Sbjct: 247 PSVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFKTSLPRRPRP 306
>5UQ6-A nrPDB
Length = 313
Score = 555 bits (1429), Expect = e-158, Method: Composition-based stats.
Identities = 265/302 (87%), Positives = 285/302 (94%)
Query: 23 TPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDIN 82
TP LRFVAVGDWGGVPNAPFHTAREMANAK IA TV+ LGADFILSLGDNFYFTGV D
Sbjct: 4 TPILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAK 63
Query: 83 DKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFK 142
DKRFQETFEDVFSD SLR VPW+VLAGNHDHLGNVSAQIAYSKISKRWNFPSP+YRL FK
Sbjct: 64 DKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFK 123
Query: 143 IPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLV 202
IP++NVSVAIFMLDTVTLCGNSDDF+SQQPERPR++ LARTQL+W+KKQLAAA+EDYVLV
Sbjct: 124 IPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVLV 183
Query: 203 AGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGN 262
AGHYPVWSIAEHGPTHCLVKQL PLL T+ VTAYLCGHDHNLQYLQDENG+G+VLSGAGN
Sbjct: 184 AGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGN 243
Query: 263 FMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRR 322
FMDPSK+H RKVPNGYLRFH+G E+SLGGFAYVEI+ KEM+VTYIEASGKSLFKT+LPRR
Sbjct: 244 FMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSVTYIEASGKSLFKTKLPRR 303
Query: 323 AR 324
AR
Sbjct: 304 AR 305
>3TGH-A nrPDB
Length = 342
Score = 320 bits (819), Expect = 7e-88, Method: Composition-based stats.
Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 56/317 (17%)
Query: 26 LRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKR 85
LRF ++GDWG T ++ NAK + ++ FI+S G NF GV+ +ND
Sbjct: 4 LRFASLGDWGK------DTKGQILNAKYFKQFIKNERVTFIVSPGSNF-IDGVKGLNDPA 56
Query: 86 FQETFEDVFSD-RSLRKVPWYVLAGNHDHLGNVSAQI-----------AYSKISK----- 128
++ +EDV+S+ + +P++ + G D GN +AQ+ + I K
Sbjct: 57 WKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQLLKGQGIYIEKNGETSIEKDADAT 116
Query: 129 ---RWNFPSPFYR--LHF---------KIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPER 174
+W P+ +Y HF K +++ A +DT L N P +
Sbjct: 117 NYPKWIMPNYWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFIDTWVLSSNF-------PYK 169
Query: 175 PRDVKLARTQLSWLKKQLAAARE--DYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYG 232
K+ + LK QL+ A++ D+++V G P++S + L L PLL
Sbjct: 170 ----KIHEKAWNDLKSQLSVAKKIADFIIVVGDQPIYSSGYSRGSSYLAYYLLPLLKDAE 225
Query: 233 VTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYG---TEDSL 289
V Y+ GHD+N++ ++D N + ++ G+G+ M K + + + G E S
Sbjct: 226 VDLYISGHDNNMEVIED-NDMAHITCGSGS-MSQGKSGMKNSKSLFFSSDIGFCVHELSN 283
Query: 290 GGFAYVEISSKEMTVTY 306
G +SSK+ V Y
Sbjct: 284 NGIVTKFVSSKKGEVIY 300
>1KBP-A nrPDB
Length = 432
Score = 40.5 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 20/195 (10%)
Query: 66 ILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSK 125
+L +GD Y + ++ R+ F++RS+ PW AGNH+ + +I ++
Sbjct: 159 VLFVGDLSYADRYPNHDNVRWDTWGR--FTERSVAYQPWIWTAGNHEI--EFAPEINETE 214
Query: 126 ISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQL 185
K + S Y + ++ Q S + F + S Q
Sbjct: 215 PFKPF---SYRYHVPYEASQ---STSPFWYSIKRASAHIIVLSSYSAY-----GRGTPQY 263
Query: 186 SWLKKQLAAARED---YVLVAGHYPVWSIAEHG--PTHCLVKQLRPLLATYGVTAYLCGH 240
+WLKK+L + +++V H P+++ H + + Y V GH
Sbjct: 264 TWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGH 323
Query: 241 DHNLQYLQDENGVGY 255
H + + + + Y
Sbjct: 324 VHAYERSERVSNIAY 338
>1XZW-A nrPDB
Length = 426
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 57/180 (31%), Gaps = 44/180 (24%)
Query: 94 FSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQ-------- 145
FS+RS+ PW AGNH+ + + I + P + + P
Sbjct: 184 FSERSVAYQPWIWTAGNHEI--DYAPDIGEYQ-------PFVPFTNRYPTPHEASGSGDP 234
Query: 146 -----TNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAARED-- 198
S I +L + F+ P Q W +L
Sbjct: 235 LWYAIKRASAHIIVL------SSYSGFVKYSP-----------QYKWFTSELEKVNRSET 277
Query: 199 -YVLVAGHYPVWSI--AEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENGVGY 255
+++V H P+++ A + + P Y V GH H+ + + + V Y
Sbjct: 278 PWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAY 337
>2Q8U-A nrPDB
Length = 336
Score = 38.2 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 98/296 (33%), Gaps = 64/296 (21%)
Query: 26 LRFVAVGDW-----GGVPNAPFHTAREMANA-KEIARTVQILGADFILSLGD------NF 73
L+ + DW + P E+ A ++ + D IL GD N
Sbjct: 19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 78
Query: 74 YFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFP 133
+ D+ D + R +R P VL GNHD G + IS F
Sbjct: 79 SVVALHDLLD----------YLKRMMRTAPVVVLPGNHDWKGLKLFGNFVTSISSDITFV 128
Query: 134 SPF--YRLHFKIPQTNVSVAIFMLD-TVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKK 190
F + K Q + D + L N DF ++L+ L +
Sbjct: 129 MSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRF----------FLESRLNKLYE 178
Query: 191 QLAAAREDYVLVAGHYPV-----WSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQ 245
+ A +ED+ + GH+ V ++ E G + + L P + Y GH H+ +
Sbjct: 179 E-ALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAA----LGHIHSFR 233
Query: 246 YLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKE 301
+Q K+ P +R +G E G +VE+ E
Sbjct: 234 EIQ-------------------KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGE 270
>2NXF-A nrPDB
Length = 322
Score = 38.2 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 170 QQPERPRDVKLARTQLSWLKKQLAAA--REDYVLVAGHYPVWSIAEHGPTHCLVKQ---L 224
+Q + + QL WL L + +++ VL+ H PV A CL +
Sbjct: 191 EQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCA--ADPICLAWNHEAV 248
Query: 225 RPLLATYG-VTAYLCGHDHNLQYLQDENGVGYVL 257
+L ++ V ++ GHDH+ D +G ++
Sbjct: 249 LSVLRSHQSVLCFIAGHDHDGGRCTDSSGAQHIT 282
>3THO-B nrPDB
Length = 379
Score = 34.7 bits (78), Expect = 0.051, Method: Composition-based stats.
Identities = 59/296 (19%), Positives = 97/296 (32%), Gaps = 64/296 (21%)
Query: 26 LRFVAVGDW-----GGVPNAPFHTAREMANA-KEIARTVQILGADFILSLGD------NF 73
++ + DW + P E+ A ++ + D IL GD N
Sbjct: 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 60
Query: 74 YFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFP 133
+ D+ D + R +R P VL GN D G + IS F
Sbjct: 61 SVVALHDLLD----------YLKRMMRTAPVVVLPGNQDWKGLKLFGNFVTSISSDITFV 110
Query: 134 SPF--YRLHFKIPQTNVSVAIFMLD-TVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKK 190
F + K Q + D + L N DF ++L+ L +
Sbjct: 111 MSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRF----------FLESRLNKLYE 160
Query: 191 QLAAAREDYVLVAGHYPV-----WSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQ 245
+ A +ED+ + GH+ V ++ E G + + L P + Y GH H+ +
Sbjct: 161 E-ALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAA----LGHIHSFR 215
Query: 246 YLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKE 301
+Q K+ P +R +G E G +VE+ E
Sbjct: 216 EIQ-------------------KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGE 252
>5LD1-A nrPDB
Length = 287
Score = 34.3 bits (77), Expect = 0.074, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 80 DINDKR----FQETFEDVFSDRSLRKVPWYVLAGNHDHLGNV 117
D+ D+R +QE +E + S PWYV+ N + N
Sbjct: 216 DLEDRRLWDRYQEAYEAAIRETSTEYAPWYVIPANKNWYRNW 257
>3JUL-A nrPDB
Length = 320
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 180 LARTQLSWLKKQLA--AAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYL 237
+++T L KQ+A +ED V++AG P H + + LL T T
Sbjct: 115 VSQTNKDNLLKQIAKKVKKEDMVVIAG---------SPPPHYTLSDFKELLRTVKATGAF 165
Query: 238 CGHDHNLQYLQ------------DENGVGYVLSGAGNFMDPSKRHQ-RKVPNGYLRFHYG 284
G D++ +YL +E+ V +L N ++ + R K+P YL G
Sbjct: 166 LGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIRTLAEKIP--YLVVSLG 223
Query: 285 TEDSL---GGFAYVEISSK 300
+ S+ G Y I K
Sbjct: 224 AKGSICAHNGKLYQVIPPK 242
>4HZ5-A nrPDB
Length = 216
Score = 31.2 bits (69), Expect = 0.58, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 211 IAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQY-LQDENGVGYVLSGAGNFMDPSKR 269
+ H LV ++ V L G+ + + +Q +N + SG G
Sbjct: 16 STDSRGLHHLVYEIV----DNAVDEALSGYGNEINVTIQKDNSICVADSGRGMPTGMHAS 71
Query: 270 HQRKVPNGYLRFHYGTEDSLGGFAY 294
V + H G + GG+
Sbjct: 72 GIPTVEVIFTVLHAGGKFGQGGYKT 96
>6B18-A nrPDB
Length = 308
Score = 30.1 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 84 KRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGN-VSAQIAYSKISK-RWNFPS 134
K ++ +ED+ ++ S ++ PW+V+ + + A+I +++ K FP+
Sbjct: 233 KDYRNAYEDMLANTSTKQAPWFVIPADDKWFTRLLIAEIICTELEKLNLTFPT 285
>4MOP-A nrPDB
Length = 633
Score = 29.7 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 125 KISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFL 168
KI+ +N P P + F +T+ M D + FL
Sbjct: 490 KITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFL 533
>1R1D-A nrPDB
Length = 247
Score = 29.7 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 84 KRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNV-SAQIAYSKIS 127
K QE DV + L P +V+ HD + N SA I Y++I
Sbjct: 165 KALQELIADVRAHLDLVYAPTFVVQARHDEMINPDSANIIYNEIE 209
>5HSQ-A nrPDB
Length = 503
Score = 29.7 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 184 QLSWLKKQLAA-AREDYVLVAGHYPVWSIAEH-----GPTHCLVKQLRP-------LLAT 230
+ +W +K+L A LV + E G L K L L T
Sbjct: 82 RYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRT 141
Query: 231 YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKRHQR 272
+ + + GHD L Y + G+V++ AG+ PS R
Sbjct: 142 AQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLR 183
>3X0U-A nrPDB
Length = 446
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 193 AAAREDYVLVAGHYPVWSIA----EHGPTHCLVKQLRPLLATY---GVTAYLCGHDHNLQ 245
AAA++DY+ + HY + E L + PLLAT +T CG D+ +
Sbjct: 123 AAAKDDYIGLVTHYLIGLEENFKRELDGDEWLGYAILPLLATTVSLQITYMACGLDYKDE 182
Query: 246 Y 246
+
Sbjct: 183 F 183
>4WZY-A nrPDB
Length = 454
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 164 SDDFLSQQPERPRDVKLARTQLSWLKKQLAAAREDYVLVAGHYP 207
+ PE+ D +LA +W+ + AA Y VAG P
Sbjct: 356 YQKLVELAPEQDADGRLADRARNWVDRNSAAFCAGYAAVAGDDP 399
>5YH2-A nrPDB
Length = 467
Score = 28.5 bits (62), Expect = 4.4, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 22/119 (18%)
Query: 44 TAREMAN-AKEIARTVQIL--GADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLR 100
T + N KEI + + F +S N F F+
Sbjct: 219 TVGRIVNVTKEILEVTKNEILQSVFFVSPASNVCF------------------FAKCPYM 260
Query: 101 KVPWYVLAGN-HDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV 158
Y + G H G++SA + ++ R + P+P+ R + + V DTV
Sbjct: 261 CKTEYAVCGKPHLLEGSLSAFLPSLNLAPRLSVPNPWIRSYTLAGKEEWEVNPLYCDTV 319
>3ND6-A nrPDB
Length = 171
Score = 27.4 bits (59), Expect = 9.1, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 43 HTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQE 88
+EM N + I + Q L + SLG NF G++++ D +++
Sbjct: 57 EATKEMPNVRVIMQETQ-LTVESAKSLGANFLIRGIRNVKDYEYEK 101
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.310 0.131 0.372
Lambda K H
0.267 0.0401 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,809,487
Number of Sequences: 36641
Number of extensions: 507690
Number of successful extensions: 1305
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 40
length of query: 325
length of database: 10,336,785
effective HSP length: 97
effective length of query: 228
effective length of database: 6,782,608
effective search space: 1546434624
effective search space used: 1546434624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 59 (27.4 bits)