BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P13000 (225 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1DTS-A nrPDB 447 e-126 3OF5-A nrPDB 118 3e-27 3QXX-A nrPDB 65 3e-11 1ION-A nrPDB 34 0.058 1G3Q-A nrPDB 32 0.25 2WDA-A nrPDB 30 0.67 5OFO-C nrPDB 30 0.80 4A0G-A nrPDB 30 0.82 1NJG-A nrPDB 30 1.1 3GLF-B nrPDB 29 1.4 3ZHS-A nrPDB 29 1.7 6B4O-A nrPDB 28 3.1 3Q87-B nrPDB 28 3.6 2R9Z-A nrPDB 28 3.6 2D7R-A nrPDB 27 5.4 3K2H-A nrPDB 27 5.8 >1DTS-A nrPDB Length = 221 Score = 447 bits (1150), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/225 (98%), Positives = 221/225 (98%), Gaps = 4/225 (1%) Query: 1 MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ 60 MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ Sbjct: 1 MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ 60 Query: 61 RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 120 RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG Sbjct: 61 RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 120 Query: 121 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 180 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP Sbjct: 121 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 180 Query: 181 PGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL 225 PGKRHAEYMTTLTRMIPAPLLGEIPWLAE AATGKYINLALL Sbjct: 181 PGKRHAEYMTTLTRMIPAPLLGEIPWLAE----AATGKYINLALL 221 >3OF5-A nrPDB Length = 228 Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 3/194 (1%) Query: 3 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRN 62 K++F+ GTDTEVGKT S L++ + ++ KPVASG + E D ++ Sbjct: 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCE--DVESILNA 62 Query: 63 SSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLR-ALEQQADWVLVEGAGGW 121 + A +N +F + +PHII+A+ I + + Q D + +EGAGG Sbjct: 63 YKHKFTAAEINLISFNQAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGL 122 Query: 122 FTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 181 TP SD T D + Q+PV+LV +K+GCINH +LT + + LAGW+AN Sbjct: 123 LTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 Query: 182 GKRHAEYMTTLTRM 195 K E + T+ + Sbjct: 183 IKYIDEQINTIEEL 196 >3QXX-A nrPDB Length = 242 Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 7/164 (4%) Query: 6 FVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDA-LALQRNSS 64 F++ T+T GKT + L Q A G +T KP+ +G +SDA L LQ N Sbjct: 25 FISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAIN--HSSDAHLFLQDNRL 82 Query: 65 LQ--LDYATVNPYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQADWVLVEGAGG 120 L L ++ Y + + ++P I +E PI++ ++ L + D V+VEGAGG Sbjct: 83 LDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGG 142 Query: 121 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQ 164 P++ D+ + + ++L+ LG IN +L +++ Sbjct: 143 LCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLK 186 >1ION-A nrPDB Length = 243 Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust. Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 19/133 (14%) Query: 103 LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQV 162 +++L+ + D++L++ G + ++ E+ ILV ++ C+ M V Sbjct: 105 IKSLKGKYDFILIDCPAGL-----QLRAMSAMLSGEE--AILVTNPEISCLTDTMKVGMV 157 Query: 163 IQHAGLTLAGWVAN-------DVTPPGKRHAEYMTTLTRMIPAPLLGE-----IPWLAEN 210 ++ AGL + G++ N D+ P + + L + P++ E IP + Sbjct: 158 LKKAGLAILGFILNRYGRSERDIPPEAAQDVMDVPLLAVIPEDPVIREGTLEGIPAVKYK 217 Query: 211 PENAATGKYINLA 223 PE+ +I LA Sbjct: 218 PESKGAQAFIKLA 230 >1G3Q-A nrPDB Length = 237 Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 19/133 (14%) Query: 103 LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQV 162 +++L+ + D++L++ G + ++ E+ +LV ++ C+ M V Sbjct: 105 IKSLKDKFDFILIDCPAGL-----QLDAMSAMLSGEE--ALLVTNPEISCLTDTMKVGIV 157 Query: 163 IQHAGLTLAGWVAN-------DVTPPGKRHAEYMTTLTRMIPAPLLGE-----IPWLAEN 210 ++ AGL + G+V N D+ P + L + P + E IP + Sbjct: 158 LKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYK 217 Query: 211 PENAATGKYINLA 223 PE+ ++ LA Sbjct: 218 PESKGAKAFVKLA 230 >2WDA-A nrPDB Length = 765 Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 86 ISAQEGRPIESLVMS-----AGLRALEQQADWVLVEGAGGWFTP 124 I+ +G P+E++V + G +AL + W +EG GGW P Sbjct: 541 ITCADGVPVETVVDNRNLGEGGTQALVRGRHWAHLEGHGGWIVP 584 >5OFO-C nrPDB Length = 871 Score = 30.0 bits (66), Expect = 0.80, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 16/87 (18%) Query: 51 LRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISA---QEGRPIESLVMSAGLRALE 107 L N LAL SL L + F EP H++SA QEG + L+ SAG+ A + Sbjct: 10 LTNKFQLALADAQSLALGHDN----QFIEPL--HLMSALLNQEGGSVSPLLTSAGINAGQ 63 Query: 108 QQAD-------WVLVEGAGGWFTPLSD 127 + D VEG GG P D Sbjct: 64 LRTDINQALNRLPQVEGTGGDVQPSQD 90 >4A0G-A nrPDB Length = 831 Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 13/115 (11%) Query: 75 YTFAEPTSPHIISAQEGRPIESLV------------MSAGLRALEQQADWVLVEGAGGWF 122 Y + SPH+ + +E +E V M G+++ E+ LVE AGG Sbjct: 156 YAWEAAISPHLAAERENATVEDSVVLQMIEKCLKEEMECGVKS-EKSDLLCLVETAGGVA 214 Query: 123 TPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVAND 177 +P D +LP ILV +LG I+ + + ++ G +A V D Sbjct: 215 SPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFED 269 >1NJG-A nrPDB Length = 250 Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/29 (51%), Positives = 18/29 (62%) Query: 130 TFADWVTQEQLPVILVVGVKLGCINHAML 158 TFAD V QE + L G+ LG I+HA L Sbjct: 21 TFADVVGQEHVLTALANGLSLGRIHHAYL 49 >3GLF-B nrPDB Length = 395 Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/29 (51%), Positives = 18/29 (62%) Query: 130 TFADWVTQEQLPVILVVGVKLGCINHAML 158 TFAD V QE + L G+ LG I+HA L Sbjct: 36 TFADVVGQEHVLTALANGLSLGRIHHAYL 64 >3ZHS-A nrPDB Length = 868 Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 12/67 (17%) Query: 135 VTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTR 194 V E L + L+ G + G H ++ Q+ G T A P R +EY T + + Sbjct: 294 VVAETLNLALLRGYRTGGTIHIVVNNQI----GFTTA--------PTDSRSSEYCTDVAK 341 Query: 195 MIPAPLL 201 MI AP+ Sbjct: 342 MIGAPIF 348 >6B4O-A nrPDB Length = 452 Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%) Query: 79 EPTSPHIISAQEGRPI-------ESLVMSAGLRALEQQADWVLVEGAG 119 E T+PHI+ A GRP E + S G ALE+ V+ GAG Sbjct: 131 EYTAPHILIATGGRPKKLGIPGEEYALDSNGFFALEEMPKRVVFVGAG 178 >3Q87-B nrPDB Length = 170 Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 121 WFTPLSDTFTFADWVTQE--QLPVILVVGVKLGCINHAMLTAQVIQHAGLTL 170 W+ P DT+T D + +E ++ ++L +G G I + + L + Sbjct: 3 WYEPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNI 54 >2R9Z-A nrPDB Length = 463 Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%) Query: 81 TSPHIISAQEGRPI-------ESLVMSAGLRALEQQADWVLVEGAG 119 ++ HI+ A GRPI E + S G AL+QQ V + GAG Sbjct: 130 SADHIVIATGGRPIVPRLPGAELGITSDGFFALQQQPKRVAIIGAG 175 >2D7R-A nrPDB Length = 570 Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 80 PTSPHIISAQEGRPIESLVMSAGLRALEQQADWVL 114 P P + A P ES VM+ GL A++++ W L Sbjct: 265 PIPPELQKADPSDPFESPVMAGGLFAVDRKWFWEL 299 >3K2H-A nrPDB Length = 511 Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 144 LVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP-GKRHAEYMTTLTRMIPAPLLG 202 L +GV ++++LTA V Q GL L +V N H + +TT IP P Sbjct: 417 LGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIPHPF-- 474 Query: 203 EIPWLAENPE 212 P L NP+ Sbjct: 475 --PRLRLNPD 482 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1DTS-A nrPDB 355 1e-98 3OF5-A nrPDB 267 3e-72 3QXX-A nrPDB 208 1e-54 Sequences not found previously or not previously below threshold: 4A0G-A nrPDB 49 2e-06 1G3Q-A nrPDB 32 0.18 1ION-A nrPDB 32 0.20 3FGN-A nrPDB 31 0.38 4WOP-A nrPDB 31 0.41 3RGG-A nrPDB 30 0.60 4JLV-A nrPDB 28 3.2 5BQS-A nrPDB 27 5.0 6A8M-A nrPDB 27 5.3 5V57-A nrPDB 27 6.2 4FIX-A nrPDB 27 6.2 5L7I-A nrPDB 27 6.4 >1DTS-A nrPDB Length = 221 Score = 355 bits (910), Expect = 1e-98, Method: Composition-based stats. Identities = 221/225 (98%), Positives = 221/225 (98%), Gaps = 4/225 (1%) Query: 1 MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ 60 MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ Sbjct: 1 MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQ 60 Query: 61 RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 120 RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG Sbjct: 61 RNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 120 Query: 121 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 180 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP Sbjct: 121 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 180 Query: 181 PGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL 225 PGKRHAEYMTTLTRMIPAPLLGEIPWLAE AATGKYINLALL Sbjct: 181 PGKRHAEYMTTLTRMIPAPLLGEIPWLAE----AATGKYINLALL 221 >3OF5-A nrPDB Length = 228 Score = 267 bits (682), Expect = 3e-72, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 3/194 (1%) Query: 3 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRN 62 K++F+ GTDTEVGKT S L++ + ++ KPVASG + E D ++ Sbjct: 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCE--DVESILNA 62 Query: 63 SSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLR-ALEQQADWVLVEGAGGW 121 + A +N +F + +PHII+A+ I + + Q D + +EGAGG Sbjct: 63 YKHKFTAAEINLISFNQAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGL 122 Query: 122 FTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 181 TP SD T D + Q+PV+LV +K+GCINH +LT + + LAGW+AN Sbjct: 123 LTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 Query: 182 GKRHAEYMTTLTRM 195 K E + T+ + Sbjct: 183 IKYIDEQINTIEEL 196 >3QXX-A nrPDB Length = 242 Score = 208 bits (530), Expect = 1e-54, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 7/168 (4%) Query: 6 FVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDA-LALQRNSS 64 F++ T+T GKT + L Q A G +T KP+ +G +SDA L LQ N Sbjct: 25 FISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAIN--HSSDAHLFLQDNRL 82 Query: 65 LQ--LDYATVNPYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQADWVLVEGAGG 120 L L ++ Y + + ++P I +E PI++ ++ L + D V+VEGAGG Sbjct: 83 LDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGG 142 Query: 121 WFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGL 168 P++ D+ + + ++L+ LG IN +L +++ L Sbjct: 143 LCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQL 190 >4A0G-A nrPDB Length = 831 Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 83/233 (35%), Gaps = 60/233 (25%) Query: 5 YFVTGTDTEVGKTVASCA-----LLQAAKAAGYRTAGYKPVASG---SEKTPEGLRNSDA 56 Y + +T +GKT+ S LLQ ++ + KP+ +G + D+ Sbjct: 37 YLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSDSRFVFSKLDS 96 Query: 57 LALQR-----------------NSSLQL---------------DYATVN---------PY 75 L+L+R SL L D TV Y Sbjct: 97 LSLRRQIPISISNSVLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELLCKTLY 156 Query: 76 TFAEPTSPHIISAQEGRPIESLVMSAGLRAL----------EQQADWV-LVEGAGGWFTP 124 + SPH+ + +E +E V+ + +++D + LVE AGG +P Sbjct: 157 AWEAAISPHLAAERENATVEDSVVLQMIEKCLKEEMECGVKSEKSDLLCLVETAGGVASP 216 Query: 125 LSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVAND 177 D +LP ILV +LG I+ + + ++ G +A V D Sbjct: 217 GPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFED 269 >1G3Q-A nrPDB Length = 237 Score = 32.4 bits (72), Expect = 0.18, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 13/109 (11%) Query: 99 MSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQL--PVILVVGVKLGCINHA 156 + +++L+ + D++L++ G D ++ +LV ++ C+ Sbjct: 101 LPEVIKSLKDKFDFILIDCPAGL---------QLDAMSAMLSGEEALLVTNPEISCLTDT 151 Query: 157 MLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIP 205 M V++ AGL + G+V N + ++ PLL IP Sbjct: 152 MKVGIVLKKAGLAILGFVLNRYGRSDRDIPPE--AAEDVMEVPLLAVIP 198 >1ION-A nrPDB Length = 243 Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 19/137 (13%) Query: 99 MSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAML 158 + +++L+ + D++L++ G + ++ E+ ILV ++ C+ M Sbjct: 101 LPEVIKSLKGKYDFILIDCPAGL-----QLRAMSAMLSGEEA--ILVTNPEISCLTDTMK 153 Query: 159 TAQVIQHAGLTLAGWVAN------DVTPPGKRHAEYMTTLTRMIPA-PLLGE-----IPW 206 V++ AGL + G++ N PP L +IP P++ E IP Sbjct: 154 VGMVLKKAGLAILGFILNRYGRSERDIPPEAAQDVMDVPLLAVIPEDPVIREGTLEGIPA 213 Query: 207 LAENPENAATGKYINLA 223 + PE+ +I LA Sbjct: 214 VKYKPESKGAQAFIKLA 230 >3FGN-A nrPDB Length = 251 Score = 31.2 bits (69), Expect = 0.38, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 11/168 (6%) Query: 31 GYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQE 90 G A KPV +G+ R D LA L + +P +P + Sbjct: 55 GIDVAVCKPVQTGTA------RGDDDLA--EVGRLAGVTQLAGLARYPQPMAPAAAAEHA 106 Query: 91 GRPIES-LVMSAGLRALEQQADWVLVEGAGGWFTPLSDT-FTFADWVTQEQLPVILVVGV 148 G + + + + L++ LVEGAGG L++ T D ++VV Sbjct: 107 GMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTA 166 Query: 149 KLGCINHAMLTAQVIQHAGLTLAGWVAND-VTPPGKRHAEYMTTLTRM 195 LG +NH LT + + ++ AG V PPG A + L R+ Sbjct: 167 DLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI 214 >4WOP-A nrPDB Length = 225 Score = 31.2 bits (69), Expect = 0.41, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 11/168 (6%) Query: 31 GYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQE 90 G A KPV +G+ + + L LA + + +P +P + Sbjct: 30 GIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLA--------GLARYPQPMAPAAAAEHA 81 Query: 91 GRPIES-LVMSAGLRALEQQADWVLVEGAGGWFTPLSDT-FTFADWVTQEQLPVILVVGV 148 G + + + + L++ LVEGAGG L++ T D ++VV Sbjct: 82 GMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTA 141 Query: 149 KLGCINHAMLTAQVIQHAGLTLAGWVAND-VTPPGKRHAEYMTTLTRM 195 LG +NH LT + + ++ AG V PPG A + L R+ Sbjct: 142 DLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI 189 >3RGG-A nrPDB Length = 159 Score = 30.5 bits (67), Expect = 0.60, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 114 LVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGW 173 V+GA P SD+F AD + ++P + + L N A+L A++ +A Sbjct: 79 FVKGATIACPPPSDSFAGADIYSSLRMPSGISPALVLEPKNAALLAARIFSLYDKEIADS 138 Query: 174 VANDVTPPGKRHAEYMTTLTR 194 V + + ++ E + L R Sbjct: 139 VKSYMESNAQKIIEDDSKLKR 159 >4JLV-A nrPDB Length = 269 Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 30/187 (16%) Query: 3 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY-----KPVASGS--EKTPEGL---- 51 KR VT GK+ + AGY+T KP + E+ GL Sbjct: 83 KRLLVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMRKPTQNYIFNEQNNNGLSSLI 142 Query: 52 --RNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQ 109 R + + A+ LD T P P +P + I S + ++ Sbjct: 143 IGRTTMSEAITSTEIENLDLLTAGPV----PPNPSEL-------IGSERFKELVDLFNKR 191 Query: 110 ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLT 169 D ++V+ TP +T T A + +LV+ + N +++ AG Sbjct: 192 YDIIIVD------TPPVNTVTDAQLYARAIKDSLLVIDNEKNDKNEVKKAKALMEKAGSN 245 Query: 170 LAGWVAN 176 + G + N Sbjct: 246 ILGVILN 252 >5BQS-A nrPDB Length = 323 Score = 27.4 bits (59), Expect = 5.0, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 10/95 (10%) Query: 47 TPEGLRNSDALALQRN------SSLQLDYATVNPYTFAEPTSPHIISA---QEGRPIESL 97 TP+ + S A +Q N + L A + + FA T+ I++ Q+G I S Sbjct: 81 TPDSMMPSTAARVQANIGANKAFAFDLTAA-CSGFVFALSTAEKFIASGRFQKGLVIGSE 139 Query: 98 VMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFA 132 +S + ++ + +GAGG S+ F Sbjct: 140 TLSKAVDWSDRSTAVLFGDGAGGVLLEASEQEHFL 174 >6A8M-A nrPDB Length = 461 Score = 27.4 bits (59), Expect = 5.3, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 17/42 (40%) Query: 112 WVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCI 153 V + G+ P T +W+ + P L+ K GC+ Sbjct: 33 LVFILGSADEENPYQKTTILHNWLLGYEFPTTLIAVFKEGCV 74 >5V57-A nrPDB Length = 648 Score = 27.0 bits (58), Expect = 6.2, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 45 EKTPEGLRNSDALALQRNSSLQLDYATV---NPYTFAEPTSPHIISAQEGRPIESLVMSA 101 ++ PEG N + ++ NSS Q + V NP ++ E I Q P+ + Sbjct: 115 DRFPEGCTN-EVQNIKFNSSGQCEVPLVRTDNPKSWYEDVEGCGIQCQN--PLFTEAEHQ 171 Query: 102 GLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK 149 + + V G T + ADW + P +++ V Sbjct: 172 DMHSYIAAFGAVT-----GLCTLFTLATFVADWRNSNRYPAVILFYVN 214 >4FIX-A nrPDB Length = 657 Score = 27.0 bits (58), Expect = 6.2, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 83 PHIISAQEGRP----IESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQE 138 P ++ + G+P I+ GLRA E V + GA W SD DW Sbjct: 373 PRQVAEELGQPLPLFIKWDDADYGLRAAEHGYPTVTLPGAAIWHMAWSDKDDAIDWQAYF 432 Query: 139 QLPVILVVG 147 L LVV Sbjct: 433 HLRNRLVVA 441 >5L7I-A nrPDB Length = 638 Score = 27.0 bits (58), Expect = 6.4, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 45 EKTPEGLRNSDALALQRNSSLQLDYATV---NPYTFAEPTSPHIISAQEGRPIESLVMSA 101 ++ PEG N + ++ NSS Q + V NP ++ E I Q P+ + Sbjct: 141 DRFPEGCTN-EVQNIKFNSSGQCEVPLVRTDNPKSWYEDVEGCGIQCQN--PLFTEAEHQ 197 Query: 102 GLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK 149 + + V G T + ADW + P +++ V Sbjct: 198 DMHSYIAAFGAVT-----GLCTLFTLATFVADWRNSNRYPAVILFYVN 240 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.315 0.131 0.351 Lambda K H 0.267 0.0400 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,991,302 Number of Sequences: 36641 Number of extensions: 284357 Number of successful extensions: 848 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 812 Number of HSP's gapped (non-prelim): 38 length of query: 225 length of database: 10,336,785 effective HSP length: 94 effective length of query: 131 effective length of database: 6,892,531 effective search space: 902921561 effective search space used: 902921561 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (26.6 bits)