BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P12904
(322 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
3TE5-C nrPDB 651 0.0
2OOY-G nrPDB 330 3e-91
6B2E-C nrPDB 191 4e-49
2UV7-A nrPDB 100 8e-22
4FXS-A nrPDB 37 0.015
1VRD-A nrPDB 31 0.61
2CU0-A nrPDB 30 1.3
1ZFJ-A nrPDB 30 1.4
4HG0-A nrPDB 29 2.1
5MIA-A nrPDB 29 2.8
3TSB-A nrPDB 29 2.9
6GIQ-f nrPDB 29 3.0
6HU9-f nrPDB 29 3.1
2RGH-A nrPDB 28 3.8
2RGO-A nrPDB 28 4.0
2YVX-A nrPDB 28 5.3
2YVZ-A nrPDB 28 6.0
>3TE5-C nrPDB
Length = 323
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 2 KPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS 61
KPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS
Sbjct: 3 KPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS 62
Query: 62 IVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQL 121
IVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQL
Sbjct: 63 IVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQL 122
Query: 122 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRET 181
DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRET
Sbjct: 123 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRET 182
Query: 182 HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 241
HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV
Sbjct: 183 HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 242
Query: 242 LGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV 301
LGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV
Sbjct: 243 LGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV 302
Query: 302 GRLVGVLTLSDILKYILLGSN 322
GRLVGVLTLSDILKYILLGSN
Sbjct: 303 GRLVGVLTLSDILKYILLGSN 323
>2OOY-G nrPDB
Length = 333
Score = 330 bits (847), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 158/307 (51%), Positives = 225/307 (73%), Gaps = 3/307 (0%)
Query: 15 QQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSR 74
Q+ A++ I+ F+ S+TSYDVLP S+RLIV D +L VK SL++L N+IVSAPLWDS+ ++
Sbjct: 7 QKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANK 66
Query: 75 FAGLLTTTDFINVIQYYF---SNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRP 131
FAGLLT DF+NVI+YY+ S P+ +DK +L GL+++ER +G +T +HP
Sbjct: 67 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 126
Query: 132 LFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDL 191
L +ACL M +SR+ RIPLID D ET E++VSVLTQYRILKF+++NC+ET L++P+ +
Sbjct: 127 LMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQM 186
Query: 192 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 251
I T N+ + M T V DVI+ML + +S+VPI++ G L+NVYE+ DV+ LI+ G Y+
Sbjct: 187 TIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYS 246
Query: 252 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS 311
+L LSVGEAL++R +F+GV+TC D+L I D I+ +RVHR FVVD+ +L G+L+L+
Sbjct: 247 NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLA 306
Query: 312 DILKYIL 318
DIL YI+
Sbjct: 307 DILNYII 313
>6B2E-C nrPDB
Length = 336
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 175/302 (57%), Gaps = 16/302 (5%)
Query: 25 FLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDF 84
F+ S YD++P S +L+V DTSL VKK+ L+ N + +APLWDSK F G+LT TDF
Sbjct: 37 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 96
Query: 85 INVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDT----ASIHPSRPLFEACLKML 140
IN++ Y+ K LV +L+ K IE V D+ I P+ LF+A ++
Sbjct: 97 INILHRYY----KSALVQIYELEEHK-IETWREVYLQDSFKPLVCISPNASLFDAVSSLI 151
Query: 141 ESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE---THFLKIPIGDLNIITQD 197
++ R+P+ID + + +LT RILKF+ L E F+ + +L I T
Sbjct: 152 RNKIHRLPVIDPESGN----TLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 207
Query: 198 NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSV 257
N+ + TTPV + + Q RVS++P++DE G ++++Y +DV+ L YN+L +SV
Sbjct: 208 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 267
Query: 258 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 317
+AL RS FEGV C ++ L TI++ + +A VHR VVD+ + G+++LSDIL+ +
Sbjct: 268 TKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 327
Query: 318 LL 319
+L
Sbjct: 328 VL 329
>2UV7-A nrPDB
Length = 152
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 85/137 (62%)
Query: 183 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 242
F+ + +L I T N+ + TTPV + + Q RVS++P++DE G ++++Y +DV+
Sbjct: 15 FMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVI 74
Query: 243 GLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 302
L YN+L +SV +AL RS FEGV C ++ L TI++ + +A VH VVD+
Sbjct: 75 NLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHGLVVVDEND 134
Query: 303 RLVGVLTLSDILKYILL 319
+ G+++LSDIL+ ++L
Sbjct: 135 VVKGIVSLSDILQALVL 151
>4FXS-A nrPDB
Length = 496
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 147 IPLIDQDEETHREIVVSV-LTQYRILKFVALNC----RETHFLKIPIGDLNIITQDNMKS 201
IP++ +T E +++ L Q + F+ N + ++ I + ++T
Sbjct: 44 IPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQVKIFEAGVVTHPVTVR 103
Query: 202 CQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL 261
+ T + DV+++ + P++ EN L+ + DV DL+ SV +
Sbjct: 104 PEQT--IADVMELTHYHGFAGFPVVTENNELVGIITGRDVR------FVTDLTKSVAAVM 155
Query: 262 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK 315
+ E + T + + + + + KARV + VV+D +L G++T D K
Sbjct: 156 TPK----ERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHK 205
>1VRD-A nrPDB
Length = 494
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 208 VIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDD 267
V + I ++ + ++ +P++DE G L+ + DV +LS + + + R
Sbjct: 114 VKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVR------FEKNLSKKIKDLMTPR--- 164
Query: 268 FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 317
E + + L + + + R+ + +V +LVG++T+ DI+ I
Sbjct: 165 -EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213
>2CU0-A nrPDB
Length = 486
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 291 RVHRFFVVDDVGRLVGVLTLSDIL 314
R+ R VVD+ G+LVG++T+SD++
Sbjct: 180 RIDRLPVVDERGKLVGLITMSDLV 203
>1ZFJ-A nrPDB
Length = 491
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 213 QMLTQGRVSSVPIID--ENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEG 270
+++ + R+S VPI++ N L+ + D+ +D + + E + E
Sbjct: 114 ELMQRYRISGVPIVETLANRKLVGIITNRDMR------FISDYNAPISEHMTS-----EH 162
Query: 271 VYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 317
+ T L T + + R+ + +VD+ GRL G++T+ DI K I
Sbjct: 163 LVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 209
>4HG0-A nrPDB
Length = 292
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 199 MKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSV 257
+K Q +DVI + S P+I E+ ++ + A D+L ++ +D
Sbjct: 82 LKRNQTLDECLDVI---IESAHSRFPVISEDKDHIEGILMAKDLLPFMR----SDAEAFS 134
Query: 258 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 317
+ ++R++ ++ ++ ++ R R H V+D+ G + G++T+ DIL+ I
Sbjct: 135 MDKVLRQA------VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 188
Query: 318 L 318
+
Sbjct: 189 V 189
>5MIA-A nrPDB
Length = 546
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 160 IVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGR 219
I V +YR ++ V+++C + I D+ II D + S Q+T +D IQ+ R
Sbjct: 210 ITVQSGKRYR-MRLVSISCDPNYLFSIDGHDMTIIEVDGVNSQQLT---VDQIQIFAAQR 265
Query: 220 VSSV 223
S V
Sbjct: 266 YSFV 269
>3TSB-A nrPDB
Length = 511
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 99/212 (46%), Gaps = 24/212 (11%)
Query: 24 KFLNSKTSYD-VLPVSYRLIVLDTSLLVKKSLNVLLQNSI--VSAPLWDSKTSRFAGLLT 80
KF+ ++D VL V + VL + VK L+ LQ +I +SA + + A +
Sbjct: 29 KFVKEGLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMA 88
Query: 81 TTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKML 140
+ +I S + E VDK ++R+ D + P +++A M
Sbjct: 89 RQGGLGIIHKNMSIEQQAEQVDK--------VKRSESGVISDPFFLTPEHQVYDAEHLMG 140
Query: 141 ESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMK 200
+ R +P+++ +E +V ++T R ++F+ + + +KI +++T++ +
Sbjct: 141 KYRISGVPVVNNLDERK---LVGIITN-RDMRFI-----QDYSIKIS----DVMTKEQLI 187
Query: 201 SCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 232
+ + T + + ++L + ++ +P++D NG L
Sbjct: 188 TAPVGTTLSEAEKILQKYKIEKLPLVDNNGVL 219
>6GIQ-f nrPDB
Length = 148
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 50 VKKSLNVLLQNSIVSAPLWDSKTSRFA----GLLTTTDFINVIQYYFSNPDKFELVDKLQ 105
V++ LN +V AP K R A L T ++Y N D++ K
Sbjct: 69 VQRVLNNCFSYDLVPAPAVIEKALRAARRVNDLPTAIRVFEALKYKVENEDQY----KAY 124
Query: 106 LDGLKDIERALGV 118
LD LKD+ + LGV
Sbjct: 125 LDELKDVRQELGV 137
>6HU9-f nrPDB
Length = 108
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 50 VKKSLNVLLQNSIVSAPLWDSKTSRFA----GLLTTTDFINVIQYYFSNPDKFELVDKLQ 105
V++ LN +V AP K R A L T ++Y N D++ K
Sbjct: 29 VQRVLNNCFSYDLVPAPAVIEKALRAARRVNDLPTAIRVFEALKYKVENEDQY----KAY 84
Query: 106 LDGLKDIERALGV 118
LD LKD+ + LGV
Sbjct: 85 LDELKDVRQELGV 97
>2RGH-A nrPDB
Length = 571
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 239 YDVLGLIKGGIYNDLSLSVGEALMR----RSDDFEG--VYTCTKNDKLSTIMDNIRKARV 292
YD L + G Y + +L+ E L R + + +G VY +N+ ++DNI+KA
Sbjct: 141 YDKLANVTGTKYENYTLTPEEVLEREPFLKKEGLKGAGVYLDFRNNDARLVIDNIKKAAE 200
Query: 293 HRFFVVDDVGRLVGVLTLSD 312
++V + + VG L D
Sbjct: 201 DGAYLVSKM-KAVGFLYEGD 219
>2RGO-A nrPDB
Length = 607
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 239 YDVLGLIKGGIYNDLSLSVGEALMR----RSDDFEG--VYTCTKNDKLSTIMDNIRKARV 292
YD L + G Y + +L+ E L R + + +G VY +N+ ++DNI+KA
Sbjct: 127 YDKLANVTGTKYENYTLTPEEVLEREPFLKKEGLKGAGVYLDFRNNDARLVIDNIKKAAE 186
Query: 293 HRFFVVDDVGRLVGVLTLSD 312
++V + + VG L D
Sbjct: 187 DGAYLVSKM-KAVGFLYEGD 205
>2YVX-A nrPDB
Length = 473
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 259 EALMRRSDDFEG-----VYTCTKND-KLSTIMDNIRKAR-----VHRFFVVDDVGRLVGV 307
EAL R +D G Y + + ++ +R+A ++ +VVD+ GRL GV
Sbjct: 147 EALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGV 206
Query: 308 LTLSDIL 314
L+L D++
Sbjct: 207 LSLRDLI 213
>2YVZ-A nrPDB
Length = 278
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 259 EALMRRSDDFEG-----VYTCTKND-KLSTIMDNIRKAR-----VHRFFVVDDVGRLVGV 307
EAL R +D G Y + + ++ +R+A ++ +VVD+ GRL GV
Sbjct: 127 EALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGV 186
Query: 308 LTLSDIL 314
L+L D++
Sbjct: 187 LSLRDLI 193
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 297 VVDDVGRLVGVLTLSDIL 314
VVD+ GRLVG++T+ D+L
Sbjct: 235 VVDEEGRLVGIVTVDDVL 252
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
3TE5-C nrPDB 481 e-136
2OOY-G nrPDB 449 e-127
6B2E-C nrPDB 404 e-113
2UV7-A nrPDB 206 9e-54
Sequences not found previously or not previously below threshold:
1ZFJ-A nrPDB 53 2e-07
2CU0-A nrPDB 48 7e-06
3TSB-A nrPDB 46 2e-05
4FXS-A nrPDB 46 3e-05
1VRD-A nrPDB 43 2e-04
4AF0-B nrPDB 40 0.002
2YVX-A nrPDB 32 0.31
2YVZ-A nrPDB 32 0.43
4HG0-A nrPDB 32 0.54
5KQV-E nrPDB 32 0.55
4ZXB-E nrPDB 32 0.55
2HR7-A nrPDB 32 0.55
2C9K-A nrPDB 31 0.64
3PC3-A nrPDB 30 1.1
4DQW-A nrPDB 30 1.7
5OHX-A nrPDB 29 2.6
1JCN-A nrPDB 29 3.5
3L5A-A nrPDB 28 3.8
4FZC-A nrPDB 28 7.1
3F9R-A nrPDB 28 7.5
1AK5-A nrPDB 27 9.4
1ZI7-A nrPDB 27 9.5
1VR9-A nrPDB 27 9.5
>3TE5-C nrPDB
Length = 323
Score = 481 bits (1239), Expect = e-136, Method: Composition-based stats.
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 2 KPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS 61
KPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS
Sbjct: 3 KPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS 62
Query: 62 IVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQL 121
IVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQL
Sbjct: 63 IVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQL 122
Query: 122 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRET 181
DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRET
Sbjct: 123 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRET 182
Query: 182 HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 241
HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV
Sbjct: 183 HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 242
Query: 242 LGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV 301
LGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV
Sbjct: 243 LGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV 302
Query: 302 GRLVGVLTLSDILKYILLGSN 322
GRLVGVLTLSDILKYILLGSN
Sbjct: 303 GRLVGVLTLSDILKYILLGSN 323
>2OOY-G nrPDB
Length = 333
Score = 449 bits (1154), Expect = e-127, Method: Composition-based stats.
Identities = 158/307 (51%), Positives = 225/307 (73%), Gaps = 3/307 (0%)
Query: 15 QQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSR 74
Q+ A++ I+ F+ S+TSYDVLP S+RLIV D +L VK SL++L N+IVSAPLWDS+ ++
Sbjct: 7 QKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANK 66
Query: 75 FAGLLTTTDFINVIQYYF---SNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRP 131
FAGLLT DF+NVI+YY+ S P+ +DK +L GL+++ER +G +T +HP
Sbjct: 67 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 126
Query: 132 LFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDL 191
L +ACL M +SR+ RIPLID D ET E++VSVLTQYRILKF+++NC+ET L++P+ +
Sbjct: 127 LMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQM 186
Query: 192 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 251
I T N+ + M T V DVI+ML + +S+VPI++ G L+NVYE+ DV+ LI+ G Y+
Sbjct: 187 TIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYS 246
Query: 252 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS 311
+L LSVGEAL++R +F+GV+TC D+L I D I+ +RVHR FVVD+ +L G+L+L+
Sbjct: 247 NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLA 306
Query: 312 DILKYIL 318
DIL YI+
Sbjct: 307 DILNYII 313
>6B2E-C nrPDB
Length = 336
Score = 404 bits (1039), Expect = e-113, Method: Composition-based stats.
Identities = 113/303 (37%), Positives = 175/303 (57%), Gaps = 16/303 (5%)
Query: 24 KFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTD 83
F+ S YD++P S +L+V DTSL VKK+ L+ N + +APLWDSK F G+LT TD
Sbjct: 36 SFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITD 95
Query: 84 FINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDT----ASIHPSRPLFEACLKM 139
FIN++ Y+ K LV +L+ K IE V D+ I P+ LF+A +
Sbjct: 96 FINILHRYY----KSALVQIYELEEHK-IETWREVYLQDSFKPLVCISPNASLFDAVSSL 150
Query: 140 LESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE---THFLKIPIGDLNIITQ 196
+ ++ R+P+ID + + +LT RILKF+ L E F+ + +L I T
Sbjct: 151 IRNKIHRLPVIDPESGN----TLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTY 206
Query: 197 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 256
N+ + TTPV + + Q RVS++P++DE G ++++Y +DV+ L YN+L +S
Sbjct: 207 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS 266
Query: 257 VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY 316
V +AL RS FEGV C ++ L TI++ + +A VHR VVD+ + G+++LSDIL+
Sbjct: 267 VTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQA 326
Query: 317 ILL 319
++L
Sbjct: 327 LVL 329
>2UV7-A nrPDB
Length = 152
Score = 206 bits (525), Expect = 9e-54, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 86/140 (61%)
Query: 180 ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAY 239
+ F+ + +L I T N+ + TTPV + + Q RVS++P++DE G ++++Y +
Sbjct: 12 KPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKF 71
Query: 240 DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD 299
DV+ L YN+L +SV +AL RS FEGV C ++ L TI++ + +A VH VVD
Sbjct: 72 DVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHGLVVVD 131
Query: 300 DVGRLVGVLTLSDILKYILL 319
+ + G+++LSDIL+ ++L
Sbjct: 132 ENDVVKGIVSLSDILQALVL 151
>1ZFJ-A nrPDB
Length = 491
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/309 (17%), Positives = 122/309 (39%), Gaps = 41/309 (13%)
Query: 24 KFLNSKTSYD---VLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLT 80
KFL ++D ++P ++ + L K + N+ L I++A + S+ A +
Sbjct: 6 KFLKKGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIA 65
Query: 81 TTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKML 140
+ VI S ++ E V + ++R+ +D + P + EA M
Sbjct: 66 RAGGLGVIHKNMSITEQAEEV--------RKVKRSENGVIIDPFFLTPEHKVSEAEELMQ 117
Query: 141 ESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMK 200
R +P++ E +V ++T R ++F++ PI + T +++
Sbjct: 118 RYRISGVPIV---ETLANRKLVGIITN-RDMRFISDY-------NAPISEHM--TSEHLV 164
Query: 201 SCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK---------GGIYN 251
+ + T + ++L + R+ +P++D +G L + D+ +I+ G +
Sbjct: 165 TAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLV 224
Query: 252 DLSLSVGEALMRRSDDF-----EGVYTCTKNDKLSTIMDNIRKARVH---RFFVVDDVGR 303
++ V R++ + + T + + ++ I + R H R + ++
Sbjct: 225 AAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIAT 284
Query: 304 LVGVLTLSD 312
G L D
Sbjct: 285 AEGARALYD 293
Score = 34.6 bits (78), Expect = 0.065, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 205 TTPVIDVIQMLTQGRVSSVPIIDE--NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM 262
V + +++ + R+S VPI++ N L+ + D+ +D + + E +
Sbjct: 106 EHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM------RFISDYNAPISEHMT 159
Query: 263 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 317
E + T L T + + R+ + +VD+ GRL G++T+ DI K I
Sbjct: 160 S-----EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 209
>2CU0-A nrPDB
Length = 486
Score = 47.7 bits (112), Expect = 7e-06, Method: Composition-based stats.
Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 32/236 (13%)
Query: 19 VESIRKFLNSKTSYDVL--PVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFA 76
VE + K + T DVL P + + D + + + NV L I+SA + A
Sbjct: 5 VEKLEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMA 64
Query: 77 GLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEAC 136
+ + VI ++ E V K ++RA + D +I P + A
Sbjct: 65 VAMAREGGLGVIHRNMGIEEQVEQV--------KRVKRAERLIVEDVITIAPDETVDFAL 116
Query: 137 LKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQ 196
M + +P+++ E VV ++T+ I RE +K + I
Sbjct: 117 FLMEKHGIDGLPVVE------DEKVVGIITKKDIA------AREGKLVKELMTKEVI--- 161
Query: 197 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND 252
+ + V + ++++ + R+ +P++DE G L+ + D L+ Y +
Sbjct: 162 ----TVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSD---LVARKKYKN 210
Score = 37.3 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 211 VIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEG 270
+ ++ + + +P++++ V+G+I + + LM +
Sbjct: 115 ALFLMEKHGIDGLPVVEDE----------KVVGIITKKDIAAREGKLVKELMTKE----- 159
Query: 271 VYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 314
V T ++ ++ + + + R+ R VVD+ G+LVG++T+SD++
Sbjct: 160 VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV 203
Score = 31.9 bits (71), Expect = 0.38, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 40 RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFE 99
+I + S+ V+++L ++++N I P+ D + + GL+T +D + +Y + D+
Sbjct: 159 EVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARKKYKNAVRDENG 217
Query: 100 LVDKLQLDGLKDIERALGVD 119
+ DI+RA+ +D
Sbjct: 218 ELLVAAAVSPFDIKRAIELD 237
>3TSB-A nrPDB
Length = 511
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/285 (18%), Positives = 119/285 (41%), Gaps = 38/285 (13%)
Query: 24 KFLNSKTSYD-VLPVSYRLIVLDTSLLVKKSLNVLLQNSI--VSAPLWDSKTSRFAGLLT 80
KF+ ++D VL V + VL + VK L+ LQ +I +SA + + A +
Sbjct: 29 KFVKEGLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMA 88
Query: 81 TTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKML 140
+ +I S + E VDK ++R+ D + P +++A M
Sbjct: 89 RQGGLGIIHKNMSIEQQAEQVDK--------VKRSESGVISDPFFLTPEHQVYDAEHLMG 140
Query: 141 ESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMK 200
+ R +P+++ +E +V ++T R ++F+ I +++T++ +
Sbjct: 141 KYRISGVPVVNNLDE---RKLVGIITN-RDMRFIQ---------DYSIKISDVMTKEQLI 187
Query: 201 SCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI---------KGGIYN 251
+ + T + + ++L + ++ +P++D NG L + D+ +I +G +
Sbjct: 188 TAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLV 247
Query: 252 DLSLSVGEALMRR-----SDDFEGVYTCTKNDKLSTIMDNIRKAR 291
++ V M R + + T + ++D +++ R
Sbjct: 248 GAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVR 292
Score = 40.8 bits (94), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 205 TTPVIDVIQMLTQGRVSSVPIID--ENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM 262
V D ++ + R+S VP+++ + L+ + D + I+ + E L+
Sbjct: 129 EHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFIQDYSIKISDVMTKEQLI 187
Query: 263 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 317
LS ++K ++ + +VD+ G L G++T+ DI K I
Sbjct: 188 TAP----------VGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232
>4FXS-A nrPDB
Length = 496
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 82/210 (39%), Gaps = 18/210 (8%)
Query: 115 ALGVDQLDTASIHPSRPLF-----EACLKMLESRSGRIPLIDQDEETHREIVVSV-LTQY 168
A D + P+ + ++ ++ + IP++ +T E +++ L Q
Sbjct: 7 AKEALTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQE 66
Query: 169 RILKFV--ALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII 226
+ F+ ++ + + + + + + DV+++ + P++
Sbjct: 67 GGIGFIHKNMSIEQQAAQVHQVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVV 126
Query: 227 DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDN 286
EN L+ + DV DL+ SV + + E + T + + + +
Sbjct: 127 TENNELVGIITGRDV------RFVTDLTKSVAAVMTPK----ERLATVKEGATGAEVQEK 176
Query: 287 IRKARVHRFFVVDDVGRLVGVLTLSDILKY 316
+ KARV + VV+D +L G++T D K
Sbjct: 177 MHKARVEKILVVNDEFQLKGMITAKDFHKA 206
>1VRD-A nrPDB
Length = 494
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 201 SCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEA 260
+ V + I ++ + ++ +P++DE G L+ + DV +LS + +
Sbjct: 107 TVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV------RFEKNLSKKIKDL 160
Query: 261 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 317
+ R E + + L + + + R+ + +V +LVG++T+ DI+ I
Sbjct: 161 MTPR----EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213
Score = 42.3 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 85/213 (39%), Gaps = 22/213 (10%)
Query: 34 VLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFS 93
++P ++ D + + + + + +VSA + + A L I +I +
Sbjct: 24 LVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLT 83
Query: 94 NPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQD 153
++ V +++ D ++ P + EA M E + G +P++D++
Sbjct: 84 PDEQARQVSI--------VKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE 135
Query: 154 EETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQ 213
+V +LT R ++F ++ L P L + D + +
Sbjct: 136 GR-----LVGLLTN-RDVRFEKNLSKKIKDLMTPREKLIVAPPD--------ISLEKAKE 181
Query: 214 MLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK 246
+L Q R+ +P++ ++ L+ + D++ +I+
Sbjct: 182 ILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE 214
>4AF0-B nrPDB
Length = 556
Score = 39.6 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 86/229 (37%), Gaps = 29/229 (12%)
Query: 21 SIRKFLNSKTS-------YDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTS 73
S+++ ++S+ + + VLP D SL K + N++L +S+P+
Sbjct: 47 SLQELMDSRKNGGLTYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTVTED 106
Query: 74 RFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLF 133
R A L + +I + S ++ +V + +++ D + P +
Sbjct: 107 RMAIALALHGGLGIIHHNCSAEEQAAMV--------RRVKKYENGFITDPLCLGPDATVG 158
Query: 134 EACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNI 193
+ ++++ G + + ++ ++T V ET + ++
Sbjct: 159 DVLE--IKAKFGFCGVPITETGEPDSKLLGIVTGRD----VQFQDAETPIKSVMTTEVVT 212
Query: 194 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 242
+ +L + + +PI+D NG+L+++ D+L
Sbjct: 213 G--------SSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLL 253
>2YVX-A nrPDB
Length = 473
Score = 32.3 bits (72), Expect = 0.31, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 202 CQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL 253
+ T +V +++ + +P++DE G L+ + DVL +++ D+
Sbjct: 232 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDI 283
Score = 28.8 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 292 VHRFFVVDDVGRLVGVLTLSDIL 314
++ +VVD+ GRL GVL+L D++
Sbjct: 191 IYYIYVVDEKGRLKGVLSLRDLI 213
>2YVZ-A nrPDB
Length = 278
Score = 31.5 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 202 CQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL 253
+ T +V +++ + +P++DE G L+ + DVL +++ D+
Sbjct: 212 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDI 263
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 292 VHRFFVVDDVGRLVGVLTLSDIL 314
++ +VVD+ GRL GVL+L D++
Sbjct: 171 IYYIYVVDEKGRLKGVLSLRDLI 193
>4HG0-A nrPDB
Length = 292
Score = 31.5 bits (70), Expect = 0.54, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 277 NDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 318
+ ++ ++ R R H V+D+ G + G++T+ DIL+ I+
Sbjct: 148 SKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV 189
>5KQV-E nrPDB
Length = 609
Score = 31.5 bits (70), Expect = 0.55, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 17 LAVESIRKFLNSKTSYDVLPVSY----RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT 72
+E I +L + SY ++ +S+ RLI +T + S L ++ LWD
Sbjct: 359 GLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQ--LWDWSK 416
Query: 73 SRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDG 108
LT T + +F K L + +++
Sbjct: 417 HN----LTITQG----KLFFHYNPKLCLSEIHKMEE 444
>4ZXB-E nrPDB
Length = 894
Score = 31.5 bits (70), Expect = 0.55, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 17 LAVESIRKFLNSKTSYDVLPVSY----RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT 72
+E I +L + SY ++ +S+ RLI +T + S L ++ LWD
Sbjct: 359 GLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQ--LWDWSK 416
Query: 73 SRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDG 108
LT T + +F K L + +++
Sbjct: 417 HN----LTITQG----KLFFHYNPKLCLSEIHKMEE 444
>2HR7-A nrPDB
Length = 486
Score = 31.5 bits (70), Expect = 0.55, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 17 LAVESIRKFLNSKTSYDVLPVSY----RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT 72
+E I +L + SY ++ +S+ RLI +T + S L ++ LWD
Sbjct: 359 GLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQ--LWDWSK 416
Query: 73 SRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDG 108
LT T + +F K L + +++
Sbjct: 417 HN----LTITQG----KLFFHYNPKLCLSEIHKMEE 444
>2C9K-A nrPDB
Length = 612
Score = 31.2 bits (69), Expect = 0.64, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 10/139 (7%)
Query: 189 GDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG 248
G++N T N +MTT V+D++ + V PI ++ +Y+ VL +
Sbjct: 218 GNINWNTY-NTYRTKMTTAVLDLVALFPNYDVGKYPIGVQSELTREIYQ---VLNF-EES 272
Query: 249 IYNDLSLSVGE-ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGV 307
Y E +L RR F + + +K T +N + + F D
Sbjct: 273 PYKYYDFQYQEDSLTRRPHLFTWLDSLNFYEKAQTTPNNFFTSHYNMFHYTLDNISQKSS 332
Query: 308 L----TLSDILKYILLGSN 322
+ ++D LK + L +N
Sbjct: 333 VFGNHNVTDKLKSLGLATN 351
>3PC3-A nrPDB
Length = 527
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 172 KFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTP-----------VIDVIQMLTQGRV 220
KFV+ N E K P+ + + ++ P V + I ++ + RV
Sbjct: 358 KFVSDNWMEARNFKEPVNEHGHWWWS-LAIAELELPAPPVILKSDATVGEAIALMKKHRV 416
Query: 221 SSVPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRR 264
+P++D+ +G ++ V ++ I ++ +AL +R
Sbjct: 417 DQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAI-KALNKR 460
>4DQW-A nrPDB
Length = 509
Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 83/209 (39%), Gaps = 25/209 (11%)
Query: 34 VLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFS 93
++P ++ D SL + + + L +VSA + +R A + I +I
Sbjct: 36 LIPGYSEVLPKDVSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMG 95
Query: 94 NPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQD 153
+ V + +++ D ++ PS + E E P+++Q
Sbjct: 96 IEQQAAEV--------RKVKKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQG 147
Query: 154 EETHREIVVSVLTQYRILKFVALNCRET-HFLKIPIGDLNIITQDNMKSCQMTTPVIDVI 212
E +V ++T R L+ V N +T + P +D + + + TP+ ++
Sbjct: 148 E------LVGIVTG-RDLR-VKPNAGDTVAAIMTP--------KDKLVTAREGTPLEEMK 191
Query: 213 QMLTQGRVSSVPIIDENGYLINVYEAYDV 241
L + R+ + ++DEN YL + D+
Sbjct: 192 AKLYENRIEKMLVVDENFYLRGLVTFRDI 220
>5OHX-A nrPDB
Length = 504
Score = 29.2 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 284 MDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG 320
M ++ A + DD + GV++L+ + Y++ G
Sbjct: 394 MHMLKNADSQLLVISDDNIHIKGVISLNKLTSYVISG 430
>1JCN-A nrPDB
Length = 514
Score = 28.8 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 56/147 (38%), Gaps = 12/147 (8%)
Query: 104 LQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVS 163
Q + ++ ++ D + PS + + + IP+ + T +V
Sbjct: 99 FQANEVRKVKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPI--TETGTMGSKLVG 156
Query: 164 VLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSV 223
++T R + F+A T ++ + ++ + +T + ++L + + +
Sbjct: 157 IVTS-RDIDFLAEKDHTTLLSEVMTPRIELV----VAPAGVTLK--EANEILQRSKKGKL 209
Query: 224 PIIDENGYLINVYEAYDVLGLIKGGIY 250
PI+++ L+ + D L K Y
Sbjct: 210 PIVNDCDELVAIIARTD---LKKNRDY 233
>3L5A-A nrPDB
Length = 419
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 141 ESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGD 190
E +GRIPLI E + L ++ + E F+
Sbjct: 313 EHLAGRIPLIASGGINSPESALDALQHADMVGMSSPFVTEPDFVHKLAEQ 362
>4FZC-A nrPDB
Length = 250
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 52 KSLNVLLQNSIV-------SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKL 104
SL + N +V S+PL S+T LLT D V Y PD LVDK
Sbjct: 33 TSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLT-PDIGAV--YSGMGPDYRVLVDKS 89
Query: 105 QLDGLKDIERALGVDQLDTASIHPSRPLFE 134
+ +R G + + +
Sbjct: 90 RKVAHTSYKRIYGEYPPTKLLVSEVAKIMQ 119
>3F9R-A nrPDB
Length = 246
Score = 27.7 bits (60), Expect = 7.5, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 34/138 (24%)
Query: 155 ETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDN------------MKSC 202
E HR+ +++ L RI+KFV R L IP+ + N ++
Sbjct: 80 EIHRQSLLNALGNDRIVKFVKKTLRLIADLDIPVQRGTFVEYRNGMINVSPIGRNCSQAE 139
Query: 203 QMTTPVIDVIQMLTQGRVSSVPIIDENGYLINV---YE-----AYDVLGLIKGGIYNDLS 254
+ V D + RV + I + + Y ++DV + Y
Sbjct: 140 RDEFEVYD-----NEHRVRASLIAELENSFPDFGLKYSIGGQISFDVFPVGWDKTY---- 190
Query: 255 LSVGEALMRRSDDFEGVY 272
L DDFE ++
Sbjct: 191 -----CLQFVEDDFEEIH 203
>1AK5-A nrPDB
Length = 503
Score = 27.3 bits (59), Expect = 9.4, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 126 IHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLK 185
+ P + + L + + + + D+ T +++ ++TQ ++ +T
Sbjct: 110 VKPDQTFAD-VLAISQRTTHNTVAV-TDDGTPHGVLLGLVTQRD----YPIDLTQTE--- 160
Query: 186 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 232
+ D+ + + + T + + +++ + +++++PIID++ +L
Sbjct: 161 TKVSDM-MTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL 206
>1ZI7-A nrPDB
Length = 406
Score = 27.3 bits (59), Expect = 9.5, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 20/121 (16%)
Query: 149 LIDQDEETHREIVVSVLTQYRILKFVALNCRETHFL---KIPIG----DLNIITQDNMKS 201
LID + E+ + +T++ I + C L K P+ +L + +N +
Sbjct: 44 LIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEH 103
Query: 202 CQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL 261
+ V+ Q+ V++ I ++ +K YN + S ++L
Sbjct: 104 PEFGETVLLSEQVSHHPPVTAFSIFNDK-------------NKVKLQGYNQIKASFTKSL 150
Query: 262 M 262
M
Sbjct: 151 M 151
>1VR9-A nrPDB
Length = 213
Score = 27.3 bits (59), Expect = 9.5, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 295 FFVVDDVGRLVGVLTLSDILKYIL 318
VVD+ RL G ++L D L+ ++
Sbjct: 106 LPVVDEEMRLKGAVSLHDFLEALI 129
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.318 0.136 0.353
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,501,903
Number of Sequences: 36641
Number of extensions: 440162
Number of successful extensions: 1300
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 82
length of query: 322
length of database: 10,336,785
effective HSP length: 97
effective length of query: 225
effective length of database: 6,782,608
effective search space: 1526086800
effective search space used: 1526086800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)