BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P12281 (411 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2NQR-A nrPDB 835 0.0 1UZ5-A nrPDB 200 8e-52 5G2R-A nrPDB 197 8e-51 2FU3-A nrPDB 196 1e-50 1XI8-A nrPDB 165 3e-41 1WU2-A nrPDB 162 2e-40 3FB4-A nrPDB 33 0.26 1Y5E-A nrPDB 33 0.31 3HDH-A nrPDB 31 0.77 3IWT-A nrPDB 31 1.0 1F14-A nrPDB 29 3.0 2PW0-A nrPDB 29 3.2 3B1F-A nrPDB 28 6.8 >2NQR-A nrPDB Length = 411 Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/411 (99%), Positives = 411/411 (100%) Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG Sbjct: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60 Query: 61 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM Sbjct: 61 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120 Query: 121 DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180 DNGVRFTAEVRSGQNIRRRGE+ISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV Sbjct: 121 DNGVRFTAEVRSGQNIRRRGENISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180 Query: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA Sbjct: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240 Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN Sbjct: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300 Query: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE Sbjct: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360 Query: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL 411 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL Sbjct: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL 411 >1UZ5-A nrPDB Length = 402 Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 139/405 (34%), Positives = 210/405 (51%), Gaps = 16/405 (3%) Query: 7 LMSLDTALNEMLS-RVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRL 65 ++ L+ AL + S +++P E +P+ + GRI A D+ SP+DVP FD + +DGYAVR Sbjct: 6 VVPLEKALEVVQSFKISP--GIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRA 63 Query: 66 ADI-----ASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120 D AS L V G AG+ + G I TGA +P +AV+ E E++ Sbjct: 64 EDTFMASEASPVRLKVIGSVHAGEEPKFKLGKGEAAYISTGAMLPGNADAVIQFEDVERV 123 Query: 121 DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180 + + G + ++G DI G ++ G RL + +++++GI +V V RK +V Sbjct: 124 NGEILIYKPAYPGLGVMKKGIDIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKV 183 Query: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240 A+ STG+E+ PG L GQIYD N A+ + +LG E I +G+ RDD +L+A +A Sbjct: 184 AVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKA 243 Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300 + DVV+ SGG S G D T +++EELGE+ +AI+PGKP G + GLPG Sbjct: 244 VNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVFGLPGY 303 Query: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360 P S F LV PLL + G G ++ R ++ GR F L +G+ Sbjct: 304 PTSCLTNFTLLVVPLLLRALGR--EGKIGKKVARLKHKVFSVKGRRQF----LPVKLEGD 357 Query: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFN 405 L V +GS +SF + F+ + +++ GE VEV F Sbjct: 358 LAVPIL--KGSGAVTSFIDADGFVEIPETVESLDEGEEVEVTLFK 400 >5G2R-A nrPDB Length = 471 Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 136/381 (35%), Positives = 198/381 (51%), Gaps = 31/381 (8%) Query: 32 LVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQP--LPVAGKSFAGQPYHG- 88 L + G++LA D+ +P +P + S DGYAV +AS P PV +S AG G Sbjct: 45 LYEALGKVLAEDIRAPDPLPPYPASVKDGYAV----VASDGPGEYPVITESRAGNDGLGV 100 Query: 89 EWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM------DNGVRFTAEVRSGQNIRRRGED 142 GT + TG P+P+G +AVV E T+ + V+ + + G +IRR G D Sbjct: 101 TVTPGTVAYVTTGGPIPDGADAVVQVEDTKVIGDVSTESKRVKILIQTKKGTDIRRVGCD 160 Query: 143 ISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLP-GQPLGDGQI 201 I A V G R+ +E+ ++A+ G+ V V VA+ STGDEL P LG GQI Sbjct: 161 IEKDATVLTTGERIGASEIGLLATAGVTMVKVYPMPIVAILSTGDELVEPTAGTLGRGQI 220 Query: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA-DSQADVVISSGGVSVGEADY 260 D+NR + + Q C+V++LGI+RDD L EA S D++++SGGVS+G+ D+ Sbjct: 221 RDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELEKVLDEAVSSGVDIILTSGGVSMGDRDF 280 Query: 261 TKTILEELGEIAFWKLAIKPGKPFAFGKL----------SNSWFCGLPGNPVSATLTFYQ 310 K +LEE G++ F K+ +KPGKP F ++ GLPGNPVS + F Sbjct: 281 VKPLLEEKGKVYFSKVLMKPGKPLTFAEIRAKPTESMLGKTVLAFGLPGNPVSCLVCFNI 340 Query: 311 LVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQ-RNADGE----LEVTT 365 V P + +L+G T S P R R+R +K P R +F R +++ ++ DG + Sbjct: 341 FVVPTIRQLAGWT-SPHPLRVRLRLQEPIKSDPIRPEFHRAIIKWKDNDGSGTPGFVAES 399 Query: 366 TGHQGSHIFSSFSLGNCFIVL 386 TGHQ S S N + L Sbjct: 400 TGHQMSSRLLSMRSANALLEL 420 >2FU3-A nrPDB Length = 419 Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 148/396 (37%), Positives = 210/396 (53%), Gaps = 22/396 (5%) Query: 7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLA 66 L S+D A +L +TP+ E + GR+LA DV + ++P F S DGYAVR A Sbjct: 6 LTSMDKAFITVLE-MTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAA 64 Query: 67 DIASGQPLPVAGKSFAG-QPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTE---QMDN 122 D G + G+S AG QP P G +R+ TGAP+P G +AVV E TE + D+ Sbjct: 65 D-GPGDRF-IIGESQAGEQPTQTVMP-GQVMRVTTGAPIPCGADAVVQVEDTELIRESDD 121 Query: 123 G-----VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRK 177 G VR + R GQ+IR G DI G V GT + +E+ ++A++G+ EV V + Sbjct: 122 GTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKF 181 Query: 178 VRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAF 237 VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D+P L A Sbjct: 182 PVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNAL 241 Query: 238 IEADSQADVVISSGGVSVGEADYTKTILE-EL-GEIAFWKLAIKPGKPFAFGKLS----N 291 E S+ADV+I+SGGVS+GE DY K +L+ +L +I F ++ +KPG P F L Sbjct: 242 NEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVR 301 Query: 292 SWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRG 351 LPGNPVSA +T V P L K+ G P + R + +K P R ++ R Sbjct: 302 KIIFALPGNPVSAVVTCNLFVVPALRKMQG-ILDPRPTIIKARLSCDVKLDP-RPEYHRC 359 Query: 352 VLQRNADGELE-VTTTGHQGSHIFSSFSLGNCFIVL 386 +L + L +TG+Q S S N ++L Sbjct: 360 ILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLML 395 >1XI8-A nrPDB Length = 403 Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 129/402 (32%), Positives = 202/402 (50%), Gaps = 24/402 (5%) Query: 7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLA 66 L + AL+ +L+ + + E +PL GR+LA D+V+ D+P FD +A+DGYAVR Sbjct: 14 LTPYEEALSIVLNDLKEIEEVEYVPLKDALGRVLAEDIVASYDLPPFDRAAVDGYAVRAE 73 Query: 67 DIASGQP-----LPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMD 121 D + L V + G+ + E AG I+++TG +P G AV+MQE ++ Sbjct: 74 DTFEAREYSPVELEVIEEVPIGENPNKEVIAGKAIKVLTGGKIPRGANAVIMQEMVKREG 133 Query: 122 NGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVA 181 + + V GQNI GED+ G + GT L +L ++ +LGI +VPV K +V Sbjct: 134 SKIYVLRPVAPGQNISFAGEDVKKGDIALKKGTILRPQDLALLKALGIRKVPVKVKPKVG 193 Query: 182 LFSTGDEL-QLPG-QPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIE 239 + TG EL Q P + G+I DTN + + ++E+ E I G++ D+ +R+A + Sbjct: 194 IIITGSELVQEPSLEEFEKGKIVDTNSIMLSALVERYFGEPILYGVVPDNEDLIRSALEK 253 Query: 240 ADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPG 299 A + D+V+ +GG + G+ DY + L F I+PG+P +G+ F + G Sbjct: 254 AKRECDLVLITGGSAFGDMDYAHKFVNLL----FHGTTIRPGRPIGYGE---RVFV-MSG 305 Query: 300 NPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADG 359 PV+ F+ V+ LAKL G A + R + GR +F R V+ R DG Sbjct: 306 YPVAVFTQFHLFVKHALAKLVG--AKDYEVKVRAVLEDDVPSQLGRYEFVR-VMYR--DG 360 Query: 360 ELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGE--WV 399 + +V +GS I SS N ++V+ D GE WV Sbjct: 361 KAKVIK--KKGSGIISSLVQSNAYLVVPEDVEGYRRGEEVWV 400 >1WU2-A nrPDB Length = 396 Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 123/408 (30%), Positives = 198/408 (48%), Gaps = 25/408 (6%) Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60 MEF L+ AL +L + + E +PL + GR+LA D+V+ D+P FD +A+DG Sbjct: 2 MEFKK-LVPYREALKLLLDDINEIEDTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDG 60 Query: 61 YAVRLADIASGQP-----LPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQE 115 YA+R D + L V + AG E G I+++TG +P+G AV+MQE Sbjct: 61 YAIRAEDTFQAREYNPIELTVIEEVPAGNVAKEEVTTGKAIKVLTGTRIPKGANAVIMQE 120 Query: 116 QTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVI 175 ++ + + V GQNI GED+ G VV GT L ++ ++ +LGI +VPV Sbjct: 121 MVKREGDKIYVLRPVAPGQNIAFTGEDVKKGEVVLRKGTILRPQDVAMLKALGIKKVPVK 180 Query: 176 RKVRVALFSTGDEL-QLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHAL 233 K +V + TG EL + P + +G+I +TN + + ++E+ E I G++ DD + Sbjct: 181 VKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESII 240 Query: 234 RAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSW 293 + +A ++ D+V+ +GG + G+ DY + L F IKPG+PF +G+ Sbjct: 241 KETLEKAKNECDIVLITGGSAFGDKDYAHKFVNLL----FHGTTIKPGRPFGYGE---KV 293 Query: 294 FCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVL 353 F + G PVS F V+ LAK+ G A + + + GR +F + + Sbjct: 294 FI-MSGYPVSVFAQFNLFVKHALAKMVG--AQNYEVKVKAILQDDIPSQLGRYEFIK-IY 349 Query: 354 QRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGE--WV 399 N + +GS I SS N ++ + D GE W+ Sbjct: 350 YENGIARV----IKKKGSGILSSLLASNAYLEIPEDSEGYRRGEEVWI 393 >3FB4-A nrPDB Length = 216 Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 17/133 (12%) Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300 D Q ++ +V +AD ++L +LG+ + L IK + +L+ W C G Sbjct: 76 DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCG- 134 Query: 301 PVSATLTFYQLVQP-----LLAKLSGNTASGL---PARQRVRTASRLKKTPGRLDF--QR 350 T++ + P + K G + P + R +K+T LDF Q+ Sbjct: 135 -----ATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQK 189 Query: 351 GVLQRNADGELEV 363 GVL ++ DG+ ++ Sbjct: 190 GVL-KDIDGQQDI 201 >1Y5E-A nrPDB Length = 169 Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 30/135 (22%) Query: 209 VHLMLEQLGCEVINLGIIRDDPHALRAAFIEA--DSQADVVISSGGVSVGEADYT----- 261 +H +L++ G +V + I++DD +++ A + DVV+++GG + + D T Sbjct: 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVS 95 Query: 262 ----KTI------------LEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSAT 305 K I LE++G A AI G + +PG+ + Sbjct: 96 ALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIG-------GTIGRKVVFSMPGSSGAVR 148 Query: 306 LTFYQLVQPLLAKLS 320 L +L+ P L ++ Sbjct: 149 LAMNKLILPELGHIT 163 >3HDH-A nrPDB Length = 302 Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 22 TPLTAQETLPLVQCFGRILASDVVSPLDVPGFD-NSAMDGY---AVRLAD--IASGQPLP 75 TP+T+Q+TL + F + L VS D PGF N + Y AVRL + AS + + Sbjct: 174 TPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDID 233 Query: 76 VAGKSFAGQP 85 A K AG P Sbjct: 234 TAMKLGAGYP 243 >3IWT-A nrPDB Length = 178 Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 22/144 (15%) Query: 188 ELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS--QAD 245 E L +P+ D ++ + L++E G ++I ++ DD + AF +A S + D Sbjct: 29 EKLLKKEPIVD----ESGDIIKQLLIEN-GHKIIGYSLVPDDKIKILKAFTDALSIDEVD 83 Query: 246 VVISSGGVSVGEADYTKTILEELGE------------IAFWKLAIKPGKPF---AFGKLS 290 V+IS+GG D T + +L + ++F +K + G + Sbjct: 84 VIISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIG 143 Query: 291 NSWFCGLPGNPVSATLTFYQLVQP 314 LPG+P + L +L+ P Sbjct: 144 KKIVYLLPGSPDAVKLALKELILP 167 >1F14-A nrPDB Length = 310 Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 22 TPLTAQETLPLVQCFGRILASDVVSPLDVPGFD-NSAMDGY---AVRLAD--IASGQPLP 75 TP+T+Q+T + F + L VS D PGF N + Y A+RL + AS + + Sbjct: 174 TPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDID 233 Query: 76 VAGKSFAGQP 85 A K AG P Sbjct: 234 TAMKLGAGYP 243 >2PW0-A nrPDB Length = 397 Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query: 90 WPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVV 149 W A I+ P+ +G +QE + +GV F A + + +D G + Sbjct: 140 WQANIGKTIIAHVPITDGA----VQETGDFELDGVTFPAAEVQIEFMNPAADDDGEGGCM 195 Query: 150 FPAGTRLTTAELPVI----ASLGIAEVPVIRKVRVALFSTGDELQ 190 FP G + E+P I A++ A +P I L TG ELQ Sbjct: 196 FPTGNLVDVLEVPGIGRFNATMINAGIPTIFINAEDLGYTGTELQ 240 >3B1F-A nrPDB Length = 290 Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 223 LGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGK 282 LGI RD PH + +D D+ + G V AD+ + L ++ + IK Sbjct: 23 LGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADF--KVFAALADVIILAVPIKKTI 80 Query: 283 PF 284 F Sbjct: 81 DF 82 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2NQR-A nrPDB 605 e-173 2FU3-A nrPDB 459 e-130 1WU2-A nrPDB 456 e-129 1XI8-A nrPDB 452 e-127 1UZ5-A nrPDB 452 e-127 5G2R-A nrPDB 422 e-118 Sequences not found previously or not previously below threshold: 3IWT-A nrPDB 48 6e-06 1Y5E-A nrPDB 47 2e-05 1R2K-B nrPDB 40 0.002 4LHB-A nrPDB 39 0.004 1O8Q-A nrPDB 37 0.018 4XCW-A nrPDB 36 0.031 4GIJ-A nrPDB 33 0.30 2IS8-A nrPDB 32 0.45 4CT9-A nrPDB 29 3.7 1BEV-1 nrPDB 29 3.8 2BBJ-A nrPDB 29 3.9 2BBH-A nrPDB 29 4.2 5YSW-A nrPDB 29 5.8 3ZZN-A nrPDB 29 5.8 >2NQR-A nrPDB Length = 411 Score = 605 bits (1560), Expect = e-173, Method: Composition-based stats. Identities = 410/411 (99%), Positives = 411/411 (100%) Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG Sbjct: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60 Query: 61 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM Sbjct: 61 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120 Query: 121 DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180 DNGVRFTAEVRSGQNIRRRGE+ISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV Sbjct: 121 DNGVRFTAEVRSGQNIRRRGENISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180 Query: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA Sbjct: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240 Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN Sbjct: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300 Query: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE Sbjct: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360 Query: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL 411 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL Sbjct: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL 411 >2FU3-A nrPDB Length = 419 Score = 459 bits (1182), Expect = e-130, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 211/413 (51%), Gaps = 23/413 (5%) Query: 7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLA 66 L S+D A +L +TP+ E + GR+LA DV + ++P F S DGYAVR A Sbjct: 6 LTSMDKAFITVLE-MTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAA 64 Query: 67 DIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTE---QMDNG 123 D G + G+S AG+ G +R+ TGAP+P G +AVV E TE + D+G Sbjct: 65 D-GPGDRF-IIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDG 122 Query: 124 -----VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKV 178 VR + R GQ+IR G DI G V GT + +E+ ++A++G+ EV V + Sbjct: 123 TEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFP 182 Query: 179 RVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFI 238 VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D+P L A Sbjct: 183 VVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALN 242 Query: 239 EADSQADVVISSGGVSVGEADYTKTIL--EELGEIAFWKLAIKPGKPFAFGKLS----NS 292 E S+ADV+I+SGGVS+GE DY K +L + +I F ++ +KPG P F L Sbjct: 243 EGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRK 302 Query: 293 WFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGV 352 LPGNPVSA +T V P L K+ G P + R + +K P R ++ R + Sbjct: 303 IIFALPGNPVSAVVTCNLFVVPALRKMQG-ILDPRPTIIKARLSCDVKLDP-RPEYHRCI 360 Query: 353 LQRNADGELE-VTTTGHQGSHIFSSFSLGNCFIVLERDRGNV---EVGEWVEV 401 L + L +TG+Q S S N ++L GE V+V Sbjct: 361 LTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDV 413 >1WU2-A nrPDB Length = 396 Score = 456 bits (1172), Expect = e-129, Method: Composition-based stats. Identities = 122/411 (29%), Positives = 198/411 (48%), Gaps = 23/411 (5%) Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60 MEF L+ AL +L + + E +PL + GR+LA D+V+ D+P FD +A+DG Sbjct: 2 MEFKK-LVPYREALKLLLDDINEIEDTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDG 60 Query: 61 YAVRLADIASGQP-----LPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQE 115 YA+R D + L V + AG E G I+++TG +P+G AV+MQE Sbjct: 61 YAIRAEDTFQAREYNPIELTVIEEVPAGNVAKEEVTTGKAIKVLTGTRIPKGANAVIMQE 120 Query: 116 QTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVI 175 ++ + + V GQNI GED+ G VV GT L ++ ++ +LGI +VPV Sbjct: 121 MVKREGDKIYVLRPVAPGQNIAFTGEDVKKGEVVLRKGTILRPQDVAMLKALGIKKVPVK 180 Query: 176 RKVRVALFSTGDEL-QLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHAL 233 K +V + TG EL + P + +G+I +TN + + ++E+ E I G++ DD + Sbjct: 181 VKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESII 240 Query: 234 RAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSW 293 + +A ++ D+V+ +GG + G+ DY + L F IKPG+PF +G+ Sbjct: 241 KETLEKAKNECDIVLITGGSAFGDKDYAHKFVNLL----FHGTTIKPGRPFGYGEK---- 292 Query: 294 FCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVL 353 + G PVS F V+ LAK+ G A + + + GR +F + + Sbjct: 293 VFIMSGYPVSVFAQFNLFVKHALAKMVG--AQNYEVKVKAILQDDIPSQLGRYEFIK-IY 349 Query: 354 QRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPF 404 N + +GS I SS N ++ + D GE V + + Sbjct: 350 YENGIARV----IKKKGSGILSSLLASNAYLEIPEDSEGYRRGEEVWITLY 396 >1XI8-A nrPDB Length = 403 Score = 452 bits (1164), Expect = e-127, Method: Composition-based stats. Identities = 128/410 (31%), Positives = 202/410 (49%), Gaps = 23/410 (5%) Query: 2 EFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGY 61 EF L + AL+ +L+ + + E +PL GR+LA D+V+ D+P FD +A+DGY Sbjct: 10 EFKR-LTPYEEALSIVLNDLKEIEEVEYVPLKDALGRVLAEDIVASYDLPPFDRAAVDGY 68 Query: 62 AVRLADIA-----SGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQ 116 AVR D S L V + G+ + E AG I+++TG +P G AV+MQE Sbjct: 69 AVRAEDTFEAREYSPVELEVIEEVPIGENPNKEVIAGKAIKVLTGGKIPRGANAVIMQEM 128 Query: 117 TEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIR 176 ++ + + V GQNI GED+ G + GT L +L ++ +LGI +VPV Sbjct: 129 VKREGSKIYVLRPVAPGQNISFAGEDVKKGDIALKKGTILRPQDLALLKALGIRKVPVKV 188 Query: 177 KVRVALFSTGDEL-QLPG-QPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALR 234 K +V + TG EL Q P + G+I DTN + + ++E+ E I G++ D+ +R Sbjct: 189 KPKVGIIITGSELVQEPSLEEFEKGKIVDTNSIMLSALVERYFGEPILYGVVPDNEDLIR 248 Query: 235 AAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWF 294 +A +A + D+V+ +GG + G+ DY + L F I+PG+P +G+ Sbjct: 249 SALEKAKRECDLVLITGGSAFGDMDYAHKFVNLL----FHGTTIRPGRPIGYGER----V 300 Query: 295 CGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQ 354 + G PV+ F+ V+ LAKL G A + R + GR +F R V+ Sbjct: 301 FVMSGYPVAVFTQFHLFVKHALAKLVG--AKDYEVKVRAVLEDDVPSQLGRYEFVR-VMY 357 Query: 355 RNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPF 404 R+ ++ +GS I SS N ++V+ D GE V V + Sbjct: 358 RDGKAKV----IKKKGSGIISSLVQSNAYLVVPEDVEGYRRGEEVWVTLY 403 >1UZ5-A nrPDB Length = 402 Score = 452 bits (1163), Expect = e-127, Method: Composition-based stats. Identities = 138/406 (33%), Positives = 209/406 (51%), Gaps = 16/406 (3%) Query: 7 LMSLDTALNEMLS-RVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRL 65 ++ L+ AL + S +++P E +P+ + GRI A D+ SP+DVP FD + +DGYAVR Sbjct: 6 VVPLEKALEVVQSFKISP--GIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRA 63 Query: 66 ADIA-----SGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120 D S L V G AG+ + G I TGA +P +AV+ E E++ Sbjct: 64 EDTFMASEASPVRLKVIGSVHAGEEPKFKLGKGEAAYISTGAMLPGNADAVIQFEDVERV 123 Query: 121 DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180 + + G + ++G DI G ++ G RL + +++++GI +V V RK +V Sbjct: 124 NGEILIYKPAYPGLGVMKKGIDIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKV 183 Query: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240 A+ STG+E+ PG L GQIYD N A+ + +LG E I +G+ RDD +L+A +A Sbjct: 184 AVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKA 243 Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300 + DVV+ SGG S G D T +++EELGE+ +AI+PGKP G + GLPG Sbjct: 244 VNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVFGLPGY 303 Query: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360 P S F LV PLL + G G ++ R ++ GR F L +G+ Sbjct: 304 PTSCLTNFTLLVVPLLLRALGR--EGKIGKKVARLKHKVFSVKGRRQF----LPVKLEGD 357 Query: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNA 406 L V +GS +SF + F+ + +++ GE VEV F Sbjct: 358 LAVPIL--KGSGAVTSFIDADGFVEIPETVESLDEGEEVEVTLFKG 401 >5G2R-A nrPDB Length = 471 Score = 422 bits (1085), Expect = e-118, Method: Composition-based stats. Identities = 140/420 (33%), Positives = 209/420 (49%), Gaps = 28/420 (6%) Query: 4 TTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAV 63 T ++ + AL + V+ + L + G++LA D+ +P +P + S DGYAV Sbjct: 18 KTEMIPTEEALRIVFG-VSKRLPPVIVSLYEALGKVLAEDIRAPDPLPPYPASVKDGYAV 76 Query: 64 RLADIASGQPLPVAGKSFAGQPYHG-EWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDN 122 +D PV +S AG G GT + TG P+P+G +AVV E T+ + + Sbjct: 77 VASD--GPGEYPVITESRAGNDGLGVTVTPGTVAYVTTGGPIPDGADAVVQVEDTKVIGD 134 Query: 123 ------GVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIR 176 V+ + + G +IRR G DI A V G R+ +E+ ++A+ G+ V V Sbjct: 135 VSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIGLLATAGVTMVKVYP 194 Query: 177 KVRVALFSTGDELQLP-GQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRA 235 VA+ STGDEL P LG GQI D+NR + + Q C+V++LGI+RDD L Sbjct: 195 MPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELEK 254 Query: 236 AFIEAD-SQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSW- 293 EA S D++++SGGVS+G+ D+ K +LEE G++ F K+ +KPGKP F ++ Sbjct: 255 VLDEAVSSGVDIILTSGGVSMGDRDFVKPLLEEKGKVYFSKVLMKPGKPLTFAEIRAKPT 314 Query: 294 ---------FCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPG 344 GLPGNPVS + F V P + +L+G T S P R R+R +K P Sbjct: 315 ESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAGWT-SPHPLRVRLRLQEPIKSDPI 373 Query: 345 RLDFQRGVLQR-NADGE----LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWV 399 R +F R +++ + DG +TGHQ S S N + L + G V Sbjct: 374 RPEFHRAIIKWKDNDGSGTPGFVAESTGHQMSSRLLSMRSANALLELPATGNVLSAGSSV 433 >3IWT-A nrPDB Length = 178 Score = 48.2 bits (113), Expect = 6e-06, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 17/142 (11%) Query: 196 LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS--QADVVISSGGV 253 L I D + + +L + G ++I ++ DD + AF +A S + DV+IS+GG Sbjct: 32 LKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 Query: 254 SVGEADYTKTILEELGE------------IAFWKLAIKPGKPFA---FGKLSNSWFCGLP 298 D T + +L + ++F +K G + LP Sbjct: 92 GYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLP 151 Query: 299 GNPVSATLTFYQLVQPLLAKLS 320 G+P + L +L+ P + L Sbjct: 152 GSPDAVKLALKELILPEVGHLV 173 >1Y5E-A nrPDB Length = 169 Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 57/134 (42%), Gaps = 24/134 (17%) Query: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA--DSQADVVISSGGVSVGEADY 260 D + +H +L++ G +V + I++DD +++ A + DVV+++GG + + D Sbjct: 30 DKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDV 89 Query: 261 TKTILEELGE---IAFWKLAIKPGKPFAF---------------GKLSNSWFCGLPGNPV 302 T + L + + F +L + ++ G + +PG+ Sbjct: 90 TIEAVSALLDKEIVGFGELF----RMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSSG 145 Query: 303 SATLTFYQLVQPLL 316 + L +L+ P L Sbjct: 146 AVRLAMNKLILPEL 159 >1R2K-B nrPDB Length = 169 Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 15/134 (11%) Query: 198 DGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIE--ADSQADVVISSGGVSV 255 G+ DT+ + ++ G V++ I++++ +A+RA A VV+ +GG + Sbjct: 21 RGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL 80 Query: 256 GEADYTKTIL--------EELGEIAFWKLAIKPGKPF-----AFGKLSNSWFCGLPGNPV 302 E D L E GE+ + G G + + +PG+ Sbjct: 81 TEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTK 140 Query: 303 SATLTFYQLVQPLL 316 + + ++ P L Sbjct: 141 ACRTAWENIIAPQL 154 >4LHB-A nrPDB Length = 186 Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Query: 198 DGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDP-HALRAAFIEADSQADVVISSGGVSVG 256 G+ D + + L +LG E + I+ DD L A F S ADVV+++GG + Sbjct: 44 KGEREDKSGPLIIEELSKLG-EHVYYKIVPDDKIEVLIALFEAIKSGADVVVTTGGTGIT 102 Query: 257 EADYTKTILEEL--GEIAFWKLA-IKPGKPFAFGKLSNSWFCGL 297 D T ++ L E++F ++ K + + + G+ Sbjct: 103 RRDITIESIKPLFDKELSFGEVFRAKSYEEVGYATVLTRATAGI 146 >1O8Q-A nrPDB Length = 167 Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 29/165 (17%) Query: 179 RVALFSTGDELQLPGQPLGDG----QIYDTNRLAVHLMLEQLGC-EVINLGIIRDDPHAL 233 +VA+ + D + P G + D++ E+LG +V+ ++ D+ + Sbjct: 7 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSS-------EKLGGAKVVATAVVPDEVERI 59 Query: 234 RAAFIE--ADSQADVVISSGGVSVGEADY----TKTILEELGEIAFWKLAIKPGKPFAFG 287 + + + D++++ GG D TK ++E + + + K F Sbjct: 60 KDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQEALKITPFA 119 Query: 288 KLSNS--------WFCGLPGNPVSATLTFYQL---VQPLLAKLSG 321 LS S +PGNP + L ++ L ++ G Sbjct: 120 MLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKG 164 >4XCW-A nrPDB Length = 178 Score = 35.8 bits (81), Expect = 0.031, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 17/144 (11%) Query: 189 LQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVI--NLGIIRDDPHALRAAFIEADS--QA 244 + G D + A+ +L + + + I+ D+ + + I+ Q Sbjct: 10 VLSASDRASKGVYEDLSGKAIQEVLSEYLLNPLEFHYEIVADERDLIEKSLIKMCDEYQC 69 Query: 245 DVVISSGGVSVGEADY----TKTILEEL--GEIAFWKLAIKPGKPFAF------GKLSNS 292 D+V+++GG D TK + +++ G ++ P A G + S Sbjct: 70 DLVVTTGGTGPALRDITPEATKKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAGIRNKS 129 Query: 293 WFCGLPGNPVSATLTFYQLVQPLL 316 LPG P S V P + Sbjct: 130 LIINLPGKPKSIRECLEA-VFPAI 152 >4GIJ-A nrPDB Length = 335 Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 70 SGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAE 129 S + L ++ + A I G P P+ + + E+T + V T Sbjct: 30 SPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIA 89 Query: 130 VRSGQNIRRRGEDISAGAVVFPAG---TRLTTAELPVIASLG 168 + G + + G ++ G T+++ +LP + + G Sbjct: 90 IIGG--VMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAG 129 >2IS8-A nrPDB Length = 164 Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 198 DGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIE-ADSQA-DVVISSGGVSV 255 G+ DT LA+ +L EV ++ D+P ++ AD + D+++++GG + Sbjct: 15 RGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGL 74 Query: 256 GEADYTKTILEELGEIAFWKLA 277 D T EL + LA Sbjct: 75 APRDRTPEATRELLDREVPGLA 96 >4CT9-A nrPDB Length = 394 Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%) Query: 188 ELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVV 247 E+ G L G+ DTN + L+ +V + D+ L EA ++A +V Sbjct: 5 EILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLV 64 Query: 248 ISSGGVSVGEADYTKTIL 265 + SGG+ D T+ + Sbjct: 65 VLSGGLGPTPDDVTREAV 82 >1BEV-1 nrPDB Length = 281 Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%) Query: 71 GQPLPVAGKSFAGQPYHGEW-PAGTCIRIMTGAPVPEGCEA 110 + S GQ E + + GAPVP ++ Sbjct: 118 DVEFTIIATSSTGQNVTTEQHTTYQVMYVPPGAPVPSNQDS 158 >2BBJ-A nrPDB Length = 354 Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPL 32 +E + L L+ + V PL +ET+P Sbjct: 222 VELRKTIWPLREVLSSLYRDVPPLIEKETVPY 253 >2BBH-A nrPDB Length = 269 Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPL 32 +E + L L+ + V PL +ET+P Sbjct: 222 VELRKTIWPLREVLSSLYRDVPPLIEKETVPY 253 >5YSW-A nrPDB Length = 441 Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%) Query: 185 TGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQA 244 T DEL L YDT + L + L L +RDDP + A E Sbjct: 263 TDDELINIANLLLIAG-YDTTASMLGLGIFVLLQRPAQLATLRDDPSRIADAVEELLRYL 321 Query: 245 DVV 247 VV Sbjct: 322 SVV 324 >3ZZN-A nrPDB Length = 310 Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 11/102 (10%) Query: 300 NPVSATLTFYQLVQPLLA-----KLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQ 354 NPV V L+ ++ G+ AR R A L+ P VL Sbjct: 117 NPVDVMTQ----VAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAP--QSVHAYVLG 170 Query: 355 RNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVG 396 + D E+ V ++ G F+ + DR ++ G Sbjct: 171 EHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEG 212 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.133 0.332 Lambda K H 0.267 0.0405 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,063,640 Number of Sequences: 36641 Number of extensions: 539322 Number of successful extensions: 1500 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 25 Number of HSP's that attempted gapping in prelim test: 1426 Number of HSP's gapped (non-prelim): 50 length of query: 411 length of database: 10,336,785 effective HSP length: 99 effective length of query: 312 effective length of database: 6,709,326 effective search space: 2093309712 effective search space used: 2093309712 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 60 (27.7 bits)