BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P12281
(411 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
2NQR-A nrPDB 835 0.0
1UZ5-A nrPDB 200 8e-52
5G2R-A nrPDB 197 8e-51
2FU3-A nrPDB 196 1e-50
1XI8-A nrPDB 165 3e-41
1WU2-A nrPDB 162 2e-40
3FB4-A nrPDB 33 0.26
1Y5E-A nrPDB 33 0.31
3HDH-A nrPDB 31 0.77
3IWT-A nrPDB 31 1.0
1F14-A nrPDB 29 3.0
2PW0-A nrPDB 29 3.2
3B1F-A nrPDB 28 6.8
>2NQR-A nrPDB
Length = 411
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/411 (99%), Positives = 411/411 (100%)
Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60
MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG
Sbjct: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60
Query: 61 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120
YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM
Sbjct: 61 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120
Query: 121 DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180
DNGVRFTAEVRSGQNIRRRGE+ISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV
Sbjct: 121 DNGVRFTAEVRSGQNIRRRGENISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180
Query: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240
ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA
Sbjct: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240
Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300
DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN
Sbjct: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300
Query: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360
PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE
Sbjct: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360
Query: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL 411
LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL
Sbjct: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL 411
>1UZ5-A nrPDB
Length = 402
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 139/405 (34%), Positives = 210/405 (51%), Gaps = 16/405 (3%)
Query: 7 LMSLDTALNEMLS-RVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRL 65
++ L+ AL + S +++P E +P+ + GRI A D+ SP+DVP FD + +DGYAVR
Sbjct: 6 VVPLEKALEVVQSFKISP--GIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRA 63
Query: 66 ADI-----ASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120
D AS L V G AG+ + G I TGA +P +AV+ E E++
Sbjct: 64 EDTFMASEASPVRLKVIGSVHAGEEPKFKLGKGEAAYISTGAMLPGNADAVIQFEDVERV 123
Query: 121 DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180
+ + G + ++G DI G ++ G RL + +++++GI +V V RK +V
Sbjct: 124 NGEILIYKPAYPGLGVMKKGIDIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKV 183
Query: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240
A+ STG+E+ PG L GQIYD N A+ + +LG E I +G+ RDD +L+A +A
Sbjct: 184 AVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKA 243
Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300
+ DVV+ SGG S G D T +++EELGE+ +AI+PGKP G + GLPG
Sbjct: 244 VNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVFGLPGY 303
Query: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360
P S F LV PLL + G G ++ R ++ GR F L +G+
Sbjct: 304 PTSCLTNFTLLVVPLLLRALGR--EGKIGKKVARLKHKVFSVKGRRQF----LPVKLEGD 357
Query: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFN 405
L V +GS +SF + F+ + +++ GE VEV F
Sbjct: 358 LAVPIL--KGSGAVTSFIDADGFVEIPETVESLDEGEEVEVTLFK 400
>5G2R-A nrPDB
Length = 471
Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 198/381 (51%), Gaps = 31/381 (8%)
Query: 32 LVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQP--LPVAGKSFAGQPYHG- 88
L + G++LA D+ +P +P + S DGYAV +AS P PV +S AG G
Sbjct: 45 LYEALGKVLAEDIRAPDPLPPYPASVKDGYAV----VASDGPGEYPVITESRAGNDGLGV 100
Query: 89 EWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM------DNGVRFTAEVRSGQNIRRRGED 142
GT + TG P+P+G +AVV E T+ + V+ + + G +IRR G D
Sbjct: 101 TVTPGTVAYVTTGGPIPDGADAVVQVEDTKVIGDVSTESKRVKILIQTKKGTDIRRVGCD 160
Query: 143 ISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLP-GQPLGDGQI 201
I A V G R+ +E+ ++A+ G+ V V VA+ STGDEL P LG GQI
Sbjct: 161 IEKDATVLTTGERIGASEIGLLATAGVTMVKVYPMPIVAILSTGDELVEPTAGTLGRGQI 220
Query: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA-DSQADVVISSGGVSVGEADY 260
D+NR + + Q C+V++LGI+RDD L EA S D++++SGGVS+G+ D+
Sbjct: 221 RDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELEKVLDEAVSSGVDIILTSGGVSMGDRDF 280
Query: 261 TKTILEELGEIAFWKLAIKPGKPFAFGKL----------SNSWFCGLPGNPVSATLTFYQ 310
K +LEE G++ F K+ +KPGKP F ++ GLPGNPVS + F
Sbjct: 281 VKPLLEEKGKVYFSKVLMKPGKPLTFAEIRAKPTESMLGKTVLAFGLPGNPVSCLVCFNI 340
Query: 311 LVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQ-RNADGE----LEVTT 365
V P + +L+G T S P R R+R +K P R +F R +++ ++ DG +
Sbjct: 341 FVVPTIRQLAGWT-SPHPLRVRLRLQEPIKSDPIRPEFHRAIIKWKDNDGSGTPGFVAES 399
Query: 366 TGHQGSHIFSSFSLGNCFIVL 386
TGHQ S S N + L
Sbjct: 400 TGHQMSSRLLSMRSANALLEL 420
>2FU3-A nrPDB
Length = 419
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 210/396 (53%), Gaps = 22/396 (5%)
Query: 7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLA 66
L S+D A +L +TP+ E + GR+LA DV + ++P F S DGYAVR A
Sbjct: 6 LTSMDKAFITVLE-MTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAA 64
Query: 67 DIASGQPLPVAGKSFAG-QPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTE---QMDN 122
D G + G+S AG QP P G +R+ TGAP+P G +AVV E TE + D+
Sbjct: 65 D-GPGDRF-IIGESQAGEQPTQTVMP-GQVMRVTTGAPIPCGADAVVQVEDTELIRESDD 121
Query: 123 G-----VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRK 177
G VR + R GQ+IR G DI G V GT + +E+ ++A++G+ EV V +
Sbjct: 122 GTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKF 181
Query: 178 VRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAF 237
VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D+P L A
Sbjct: 182 PVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNAL 241
Query: 238 IEADSQADVVISSGGVSVGEADYTKTILE-EL-GEIAFWKLAIKPGKPFAFGKLS----N 291
E S+ADV+I+SGGVS+GE DY K +L+ +L +I F ++ +KPG P F L
Sbjct: 242 NEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVR 301
Query: 292 SWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRG 351
LPGNPVSA +T V P L K+ G P + R + +K P R ++ R
Sbjct: 302 KIIFALPGNPVSAVVTCNLFVVPALRKMQG-ILDPRPTIIKARLSCDVKLDP-RPEYHRC 359
Query: 352 VLQRNADGELE-VTTTGHQGSHIFSSFSLGNCFIVL 386
+L + L +TG+Q S S N ++L
Sbjct: 360 ILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLML 395
>1XI8-A nrPDB
Length = 403
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 202/402 (50%), Gaps = 24/402 (5%)
Query: 7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLA 66
L + AL+ +L+ + + E +PL GR+LA D+V+ D+P FD +A+DGYAVR
Sbjct: 14 LTPYEEALSIVLNDLKEIEEVEYVPLKDALGRVLAEDIVASYDLPPFDRAAVDGYAVRAE 73
Query: 67 DIASGQP-----LPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMD 121
D + L V + G+ + E AG I+++TG +P G AV+MQE ++
Sbjct: 74 DTFEAREYSPVELEVIEEVPIGENPNKEVIAGKAIKVLTGGKIPRGANAVIMQEMVKREG 133
Query: 122 NGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVA 181
+ + V GQNI GED+ G + GT L +L ++ +LGI +VPV K +V
Sbjct: 134 SKIYVLRPVAPGQNISFAGEDVKKGDIALKKGTILRPQDLALLKALGIRKVPVKVKPKVG 193
Query: 182 LFSTGDEL-QLPG-QPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIE 239
+ TG EL Q P + G+I DTN + + ++E+ E I G++ D+ +R+A +
Sbjct: 194 IIITGSELVQEPSLEEFEKGKIVDTNSIMLSALVERYFGEPILYGVVPDNEDLIRSALEK 253
Query: 240 ADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPG 299
A + D+V+ +GG + G+ DY + L F I+PG+P +G+ F + G
Sbjct: 254 AKRECDLVLITGGSAFGDMDYAHKFVNLL----FHGTTIRPGRPIGYGE---RVFV-MSG 305
Query: 300 NPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADG 359
PV+ F+ V+ LAKL G A + R + GR +F R V+ R DG
Sbjct: 306 YPVAVFTQFHLFVKHALAKLVG--AKDYEVKVRAVLEDDVPSQLGRYEFVR-VMYR--DG 360
Query: 360 ELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGE--WV 399
+ +V +GS I SS N ++V+ D GE WV
Sbjct: 361 KAKVIK--KKGSGIISSLVQSNAYLVVPEDVEGYRRGEEVWV 400
>1WU2-A nrPDB
Length = 396
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 198/408 (48%), Gaps = 25/408 (6%)
Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60
MEF L+ AL +L + + E +PL + GR+LA D+V+ D+P FD +A+DG
Sbjct: 2 MEFKK-LVPYREALKLLLDDINEIEDTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDG 60
Query: 61 YAVRLADIASGQP-----LPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQE 115
YA+R D + L V + AG E G I+++TG +P+G AV+MQE
Sbjct: 61 YAIRAEDTFQAREYNPIELTVIEEVPAGNVAKEEVTTGKAIKVLTGTRIPKGANAVIMQE 120
Query: 116 QTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVI 175
++ + + V GQNI GED+ G VV GT L ++ ++ +LGI +VPV
Sbjct: 121 MVKREGDKIYVLRPVAPGQNIAFTGEDVKKGEVVLRKGTILRPQDVAMLKALGIKKVPVK 180
Query: 176 RKVRVALFSTGDEL-QLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHAL 233
K +V + TG EL + P + +G+I +TN + + ++E+ E I G++ DD +
Sbjct: 181 VKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESII 240
Query: 234 RAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSW 293
+ +A ++ D+V+ +GG + G+ DY + L F IKPG+PF +G+
Sbjct: 241 KETLEKAKNECDIVLITGGSAFGDKDYAHKFVNLL----FHGTTIKPGRPFGYGE---KV 293
Query: 294 FCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVL 353
F + G PVS F V+ LAK+ G A + + + GR +F + +
Sbjct: 294 FI-MSGYPVSVFAQFNLFVKHALAKMVG--AQNYEVKVKAILQDDIPSQLGRYEFIK-IY 349
Query: 354 QRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGE--WV 399
N + +GS I SS N ++ + D GE W+
Sbjct: 350 YENGIARV----IKKKGSGILSSLLASNAYLEIPEDSEGYRRGEEVWI 393
>3FB4-A nrPDB
Length = 216
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300
D Q ++ +V +AD ++L +LG+ + L IK + +L+ W C G
Sbjct: 76 DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCG- 134
Query: 301 PVSATLTFYQLVQP-----LLAKLSGNTASGL---PARQRVRTASRLKKTPGRLDF--QR 350
T++ + P + K G + P + R +K+T LDF Q+
Sbjct: 135 -----ATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQK 189
Query: 351 GVLQRNADGELEV 363
GVL ++ DG+ ++
Sbjct: 190 GVL-KDIDGQQDI 201
>1Y5E-A nrPDB
Length = 169
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 209 VHLMLEQLGCEVINLGIIRDDPHALRAAFIEA--DSQADVVISSGGVSVGEADYT----- 261
+H +L++ G +V + I++DD +++ A + DVV+++GG + + D T
Sbjct: 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVS 95
Query: 262 ----KTI------------LEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSAT 305
K I LE++G A AI G + +PG+ +
Sbjct: 96 ALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIG-------GTIGRKVVFSMPGSSGAVR 148
Query: 306 LTFYQLVQPLLAKLS 320
L +L+ P L ++
Sbjct: 149 LAMNKLILPELGHIT 163
>3HDH-A nrPDB
Length = 302
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 22 TPLTAQETLPLVQCFGRILASDVVSPLDVPGFD-NSAMDGY---AVRLAD--IASGQPLP 75
TP+T+Q+TL + F + L VS D PGF N + Y AVRL + AS + +
Sbjct: 174 TPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDID 233
Query: 76 VAGKSFAGQP 85
A K AG P
Sbjct: 234 TAMKLGAGYP 243
>3IWT-A nrPDB
Length = 178
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 188 ELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS--QAD 245
E L +P+ D ++ + L++E G ++I ++ DD + AF +A S + D
Sbjct: 29 EKLLKKEPIVD----ESGDIIKQLLIEN-GHKIIGYSLVPDDKIKILKAFTDALSIDEVD 83
Query: 246 VVISSGGVSVGEADYTKTILEELGE------------IAFWKLAIKPGKPF---AFGKLS 290
V+IS+GG D T + +L + ++F +K + G +
Sbjct: 84 VIISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIG 143
Query: 291 NSWFCGLPGNPVSATLTFYQLVQP 314
LPG+P + L +L+ P
Sbjct: 144 KKIVYLLPGSPDAVKLALKELILP 167
>1F14-A nrPDB
Length = 310
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 22 TPLTAQETLPLVQCFGRILASDVVSPLDVPGFD-NSAMDGY---AVRLAD--IASGQPLP 75
TP+T+Q+T + F + L VS D PGF N + Y A+RL + AS + +
Sbjct: 174 TPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDID 233
Query: 76 VAGKSFAGQP 85
A K AG P
Sbjct: 234 TAMKLGAGYP 243
>2PW0-A nrPDB
Length = 397
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 90 WPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVV 149
W A I+ P+ +G +QE + +GV F A + + +D G +
Sbjct: 140 WQANIGKTIIAHVPITDGA----VQETGDFELDGVTFPAAEVQIEFMNPAADDDGEGGCM 195
Query: 150 FPAGTRLTTAELPVI----ASLGIAEVPVIRKVRVALFSTGDELQ 190
FP G + E+P I A++ A +P I L TG ELQ
Sbjct: 196 FPTGNLVDVLEVPGIGRFNATMINAGIPTIFINAEDLGYTGTELQ 240
>3B1F-A nrPDB
Length = 290
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 223 LGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGK 282
LGI RD PH + +D D+ + G V AD+ + L ++ + IK
Sbjct: 23 LGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADF--KVFAALADVIILAVPIKKTI 80
Query: 283 PF 284
F
Sbjct: 81 DF 82
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
2NQR-A nrPDB 605 e-173
2FU3-A nrPDB 459 e-130
1WU2-A nrPDB 456 e-129
1XI8-A nrPDB 452 e-127
1UZ5-A nrPDB 452 e-127
5G2R-A nrPDB 422 e-118
Sequences not found previously or not previously below threshold:
3IWT-A nrPDB 48 6e-06
1Y5E-A nrPDB 47 2e-05
1R2K-B nrPDB 40 0.002
4LHB-A nrPDB 39 0.004
1O8Q-A nrPDB 37 0.018
4XCW-A nrPDB 36 0.031
4GIJ-A nrPDB 33 0.30
2IS8-A nrPDB 32 0.45
4CT9-A nrPDB 29 3.7
1BEV-1 nrPDB 29 3.8
2BBJ-A nrPDB 29 3.9
2BBH-A nrPDB 29 4.2
5YSW-A nrPDB 29 5.8
3ZZN-A nrPDB 29 5.8
>2NQR-A nrPDB
Length = 411
Score = 605 bits (1560), Expect = e-173, Method: Composition-based stats.
Identities = 410/411 (99%), Positives = 411/411 (100%)
Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60
MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG
Sbjct: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60
Query: 61 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120
YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM
Sbjct: 61 YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120
Query: 121 DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180
DNGVRFTAEVRSGQNIRRRGE+ISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV
Sbjct: 121 DNGVRFTAEVRSGQNIRRRGENISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180
Query: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240
ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA
Sbjct: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240
Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300
DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN
Sbjct: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300
Query: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360
PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE
Sbjct: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360
Query: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL 411
LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL
Sbjct: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL 411
>2FU3-A nrPDB
Length = 419
Score = 459 bits (1182), Expect = e-130, Method: Composition-based stats.
Identities = 148/413 (35%), Positives = 211/413 (51%), Gaps = 23/413 (5%)
Query: 7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLA 66
L S+D A +L +TP+ E + GR+LA DV + ++P F S DGYAVR A
Sbjct: 6 LTSMDKAFITVLE-MTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAA 64
Query: 67 DIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTE---QMDNG 123
D G + G+S AG+ G +R+ TGAP+P G +AVV E TE + D+G
Sbjct: 65 D-GPGDRF-IIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDG 122
Query: 124 -----VRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKV 178
VR + R GQ+IR G DI G V GT + +E+ ++A++G+ EV V +
Sbjct: 123 TEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFP 182
Query: 179 RVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFI 238
VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D+P L A
Sbjct: 183 VVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALN 242
Query: 239 EADSQADVVISSGGVSVGEADYTKTIL--EELGEIAFWKLAIKPGKPFAFGKLS----NS 292
E S+ADV+I+SGGVS+GE DY K +L + +I F ++ +KPG P F L
Sbjct: 243 EGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRK 302
Query: 293 WFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGV 352
LPGNPVSA +T V P L K+ G P + R + +K P R ++ R +
Sbjct: 303 IIFALPGNPVSAVVTCNLFVVPALRKMQG-ILDPRPTIIKARLSCDVKLDP-RPEYHRCI 360
Query: 353 LQRNADGELE-VTTTGHQGSHIFSSFSLGNCFIVLERDRGNV---EVGEWVEV 401
L + L +TG+Q S S N ++L GE V+V
Sbjct: 361 LTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDV 413
>1WU2-A nrPDB
Length = 396
Score = 456 bits (1172), Expect = e-129, Method: Composition-based stats.
Identities = 122/411 (29%), Positives = 198/411 (48%), Gaps = 23/411 (5%)
Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG 60
MEF L+ AL +L + + E +PL + GR+LA D+V+ D+P FD +A+DG
Sbjct: 2 MEFKK-LVPYREALKLLLDDINEIEDTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDG 60
Query: 61 YAVRLADIASGQP-----LPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQE 115
YA+R D + L V + AG E G I+++TG +P+G AV+MQE
Sbjct: 61 YAIRAEDTFQAREYNPIELTVIEEVPAGNVAKEEVTTGKAIKVLTGTRIPKGANAVIMQE 120
Query: 116 QTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVI 175
++ + + V GQNI GED+ G VV GT L ++ ++ +LGI +VPV
Sbjct: 121 MVKREGDKIYVLRPVAPGQNIAFTGEDVKKGEVVLRKGTILRPQDVAMLKALGIKKVPVK 180
Query: 176 RKVRVALFSTGDEL-QLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHAL 233
K +V + TG EL + P + +G+I +TN + + ++E+ E I G++ DD +
Sbjct: 181 VKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESII 240
Query: 234 RAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSW 293
+ +A ++ D+V+ +GG + G+ DY + L F IKPG+PF +G+
Sbjct: 241 KETLEKAKNECDIVLITGGSAFGDKDYAHKFVNLL----FHGTTIKPGRPFGYGEK---- 292
Query: 294 FCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVL 353
+ G PVS F V+ LAK+ G A + + + GR +F + +
Sbjct: 293 VFIMSGYPVSVFAQFNLFVKHALAKMVG--AQNYEVKVKAILQDDIPSQLGRYEFIK-IY 349
Query: 354 QRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPF 404
N + +GS I SS N ++ + D GE V + +
Sbjct: 350 YENGIARV----IKKKGSGILSSLLASNAYLEIPEDSEGYRRGEEVWITLY 396
>1XI8-A nrPDB
Length = 403
Score = 452 bits (1164), Expect = e-127, Method: Composition-based stats.
Identities = 128/410 (31%), Positives = 202/410 (49%), Gaps = 23/410 (5%)
Query: 2 EFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGY 61
EF L + AL+ +L+ + + E +PL GR+LA D+V+ D+P FD +A+DGY
Sbjct: 10 EFKR-LTPYEEALSIVLNDLKEIEEVEYVPLKDALGRVLAEDIVASYDLPPFDRAAVDGY 68
Query: 62 AVRLADIA-----SGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQ 116
AVR D S L V + G+ + E AG I+++TG +P G AV+MQE
Sbjct: 69 AVRAEDTFEAREYSPVELEVIEEVPIGENPNKEVIAGKAIKVLTGGKIPRGANAVIMQEM 128
Query: 117 TEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIR 176
++ + + V GQNI GED+ G + GT L +L ++ +LGI +VPV
Sbjct: 129 VKREGSKIYVLRPVAPGQNISFAGEDVKKGDIALKKGTILRPQDLALLKALGIRKVPVKV 188
Query: 177 KVRVALFSTGDEL-QLPG-QPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALR 234
K +V + TG EL Q P + G+I DTN + + ++E+ E I G++ D+ +R
Sbjct: 189 KPKVGIIITGSELVQEPSLEEFEKGKIVDTNSIMLSALVERYFGEPILYGVVPDNEDLIR 248
Query: 235 AAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWF 294
+A +A + D+V+ +GG + G+ DY + L F I+PG+P +G+
Sbjct: 249 SALEKAKRECDLVLITGGSAFGDMDYAHKFVNLL----FHGTTIRPGRPIGYGER----V 300
Query: 295 CGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQ 354
+ G PV+ F+ V+ LAKL G A + R + GR +F R V+
Sbjct: 301 FVMSGYPVAVFTQFHLFVKHALAKLVG--AKDYEVKVRAVLEDDVPSQLGRYEFVR-VMY 357
Query: 355 RNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPF 404
R+ ++ +GS I SS N ++V+ D GE V V +
Sbjct: 358 RDGKAKV----IKKKGSGIISSLVQSNAYLVVPEDVEGYRRGEEVWVTLY 403
>1UZ5-A nrPDB
Length = 402
Score = 452 bits (1163), Expect = e-127, Method: Composition-based stats.
Identities = 138/406 (33%), Positives = 209/406 (51%), Gaps = 16/406 (3%)
Query: 7 LMSLDTALNEMLS-RVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRL 65
++ L+ AL + S +++P E +P+ + GRI A D+ SP+DVP FD + +DGYAVR
Sbjct: 6 VVPLEKALEVVQSFKISP--GIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRA 63
Query: 66 ADIA-----SGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM 120
D S L V G AG+ + G I TGA +P +AV+ E E++
Sbjct: 64 EDTFMASEASPVRLKVIGSVHAGEEPKFKLGKGEAAYISTGAMLPGNADAVIQFEDVERV 123
Query: 121 DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV 180
+ + G + ++G DI G ++ G RL + +++++GI +V V RK +V
Sbjct: 124 NGEILIYKPAYPGLGVMKKGIDIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKV 183
Query: 181 ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240
A+ STG+E+ PG L GQIYD N A+ + +LG E I +G+ RDD +L+A +A
Sbjct: 184 AVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKA 243
Query: 241 DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN 300
+ DVV+ SGG S G D T +++EELGE+ +AI+PGKP G + GLPG
Sbjct: 244 VNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVFGLPGY 303
Query: 301 PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE 360
P S F LV PLL + G G ++ R ++ GR F L +G+
Sbjct: 304 PTSCLTNFTLLVVPLLLRALGR--EGKIGKKVARLKHKVFSVKGRRQF----LPVKLEGD 357
Query: 361 LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNA 406
L V +GS +SF + F+ + +++ GE VEV F
Sbjct: 358 LAVPIL--KGSGAVTSFIDADGFVEIPETVESLDEGEEVEVTLFKG 401
>5G2R-A nrPDB
Length = 471
Score = 422 bits (1085), Expect = e-118, Method: Composition-based stats.
Identities = 140/420 (33%), Positives = 209/420 (49%), Gaps = 28/420 (6%)
Query: 4 TTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAV 63
T ++ + AL + V+ + L + G++LA D+ +P +P + S DGYAV
Sbjct: 18 KTEMIPTEEALRIVFG-VSKRLPPVIVSLYEALGKVLAEDIRAPDPLPPYPASVKDGYAV 76
Query: 64 RLADIASGQPLPVAGKSFAGQPYHG-EWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDN 122
+D PV +S AG G GT + TG P+P+G +AVV E T+ + +
Sbjct: 77 VASD--GPGEYPVITESRAGNDGLGVTVTPGTVAYVTTGGPIPDGADAVVQVEDTKVIGD 134
Query: 123 ------GVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIR 176
V+ + + G +IRR G DI A V G R+ +E+ ++A+ G+ V V
Sbjct: 135 VSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIGLLATAGVTMVKVYP 194
Query: 177 KVRVALFSTGDELQLP-GQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRA 235
VA+ STGDEL P LG GQI D+NR + + Q C+V++LGI+RDD L
Sbjct: 195 MPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELEK 254
Query: 236 AFIEAD-SQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSW- 293
EA S D++++SGGVS+G+ D+ K +LEE G++ F K+ +KPGKP F ++
Sbjct: 255 VLDEAVSSGVDIILTSGGVSMGDRDFVKPLLEEKGKVYFSKVLMKPGKPLTFAEIRAKPT 314
Query: 294 ---------FCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPG 344
GLPGNPVS + F V P + +L+G T S P R R+R +K P
Sbjct: 315 ESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAGWT-SPHPLRVRLRLQEPIKSDPI 373
Query: 345 RLDFQRGVLQR-NADGE----LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWV 399
R +F R +++ + DG +TGHQ S S N + L + G V
Sbjct: 374 RPEFHRAIIKWKDNDGSGTPGFVAESTGHQMSSRLLSMRSANALLELPATGNVLSAGSSV 433
>3IWT-A nrPDB
Length = 178
Score = 48.2 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 196 LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS--QADVVISSGGV 253
L I D + + +L + G ++I ++ DD + AF +A S + DV+IS+GG
Sbjct: 32 LKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91
Query: 254 SVGEADYTKTILEELGE------------IAFWKLAIKPGKPFA---FGKLSNSWFCGLP 298
D T + +L + ++F +K G + LP
Sbjct: 92 GYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLP 151
Query: 299 GNPVSATLTFYQLVQPLLAKLS 320
G+P + L +L+ P + L
Sbjct: 152 GSPDAVKLALKELILPEVGHLV 173
>1Y5E-A nrPDB
Length = 169
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA--DSQADVVISSGGVSVGEADY 260
D + +H +L++ G +V + I++DD +++ A + DVV+++GG + + D
Sbjct: 30 DKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDV 89
Query: 261 TKTILEELGE---IAFWKLAIKPGKPFAF---------------GKLSNSWFCGLPGNPV 302
T + L + + F +L + ++ G + +PG+
Sbjct: 90 TIEAVSALLDKEIVGFGELF----RMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSSG 145
Query: 303 SATLTFYQLVQPLL 316
+ L +L+ P L
Sbjct: 146 AVRLAMNKLILPEL 159
>1R2K-B nrPDB
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 15/134 (11%)
Query: 198 DGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIE--ADSQADVVISSGGVSV 255
G+ DT+ + ++ G V++ I++++ +A+RA A VV+ +GG +
Sbjct: 21 RGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL 80
Query: 256 GEADYTKTIL--------EELGEIAFWKLAIKPGKPF-----AFGKLSNSWFCGLPGNPV 302
E D L E GE+ + G G + + +PG+
Sbjct: 81 TEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTK 140
Query: 303 SATLTFYQLVQPLL 316
+ + ++ P L
Sbjct: 141 ACRTAWENIIAPQL 154
>4LHB-A nrPDB
Length = 186
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 198 DGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDP-HALRAAFIEADSQADVVISSGGVSVG 256
G+ D + + L +LG E + I+ DD L A F S ADVV+++GG +
Sbjct: 44 KGEREDKSGPLIIEELSKLG-EHVYYKIVPDDKIEVLIALFEAIKSGADVVVTTGGTGIT 102
Query: 257 EADYTKTILEEL--GEIAFWKLA-IKPGKPFAFGKLSNSWFCGL 297
D T ++ L E++F ++ K + + + G+
Sbjct: 103 RRDITIESIKPLFDKELSFGEVFRAKSYEEVGYATVLTRATAGI 146
>1O8Q-A nrPDB
Length = 167
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 29/165 (17%)
Query: 179 RVALFSTGDELQLPGQPLGDG----QIYDTNRLAVHLMLEQLGC-EVINLGIIRDDPHAL 233
+VA+ + D + P G + D++ E+LG +V+ ++ D+ +
Sbjct: 7 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSS-------EKLGGAKVVATAVVPDEVERI 59
Query: 234 RAAFIE--ADSQADVVISSGGVSVGEADY----TKTILEELGEIAFWKLAIKPGKPFAFG 287
+ + + D++++ GG D TK ++E + + + K F
Sbjct: 60 KDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQEALKITPFA 119
Query: 288 KLSNS--------WFCGLPGNPVSATLTFYQL---VQPLLAKLSG 321
LS S +PGNP + L ++ L ++ G
Sbjct: 120 MLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKG 164
>4XCW-A nrPDB
Length = 178
Score = 35.8 bits (81), Expect = 0.031, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 189 LQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVI--NLGIIRDDPHALRAAFIEADS--QA 244
+ G D + A+ +L + + + I+ D+ + + I+ Q
Sbjct: 10 VLSASDRASKGVYEDLSGKAIQEVLSEYLLNPLEFHYEIVADERDLIEKSLIKMCDEYQC 69
Query: 245 DVVISSGGVSVGEADY----TKTILEEL--GEIAFWKLAIKPGKPFAF------GKLSNS 292
D+V+++GG D TK + +++ G ++ P A G + S
Sbjct: 70 DLVVTTGGTGPALRDITPEATKKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAGIRNKS 129
Query: 293 WFCGLPGNPVSATLTFYQLVQPLL 316
LPG P S V P +
Sbjct: 130 LIINLPGKPKSIRECLEA-VFPAI 152
>4GIJ-A nrPDB
Length = 335
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 70 SGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAE 129
S + L ++ + A I G P P+ + + E+T + V T
Sbjct: 30 SPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIA 89
Query: 130 VRSGQNIRRRGEDISAGAVVFPAG---TRLTTAELPVIASLG 168
+ G + + G ++ G T+++ +LP + + G
Sbjct: 90 IIGG--VMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAG 129
>2IS8-A nrPDB
Length = 164
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 198 DGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIE-ADSQA-DVVISSGGVSV 255
G+ DT LA+ +L EV ++ D+P ++ AD + D+++++GG +
Sbjct: 15 RGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGL 74
Query: 256 GEADYTKTILEELGEIAFWKLA 277
D T EL + LA
Sbjct: 75 APRDRTPEATRELLDREVPGLA 96
>4CT9-A nrPDB
Length = 394
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 188 ELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVV 247
E+ G L G+ DTN + L+ +V + D+ L EA ++A +V
Sbjct: 5 EILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLV 64
Query: 248 ISSGGVSVGEADYTKTIL 265
+ SGG+ D T+ +
Sbjct: 65 VLSGGLGPTPDDVTREAV 82
>1BEV-1 nrPDB
Length = 281
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 71 GQPLPVAGKSFAGQPYHGEW-PAGTCIRIMTGAPVPEGCEA 110
+ S GQ E + + GAPVP ++
Sbjct: 118 DVEFTIIATSSTGQNVTTEQHTTYQVMYVPPGAPVPSNQDS 158
>2BBJ-A nrPDB
Length = 354
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPL 32
+E + L L+ + V PL +ET+P
Sbjct: 222 VELRKTIWPLREVLSSLYRDVPPLIEKETVPY 253
>2BBH-A nrPDB
Length = 269
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1 MEFTTGLMSLDTALNEMLSRVTPLTAQETLPL 32
+E + L L+ + V PL +ET+P
Sbjct: 222 VELRKTIWPLREVLSSLYRDVPPLIEKETVPY 253
>5YSW-A nrPDB
Length = 441
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 185 TGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQA 244
T DEL L YDT + L + L L +RDDP + A E
Sbjct: 263 TDDELINIANLLLIAG-YDTTASMLGLGIFVLLQRPAQLATLRDDPSRIADAVEELLRYL 321
Query: 245 DVV 247
VV
Sbjct: 322 SVV 324
>3ZZN-A nrPDB
Length = 310
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 300 NPVSATLTFYQLVQPLLA-----KLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQ 354
NPV V L+ ++ G+ AR R A L+ P VL
Sbjct: 117 NPVDVMTQ----VAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAP--QSVHAYVLG 170
Query: 355 RNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVG 396
+ D E+ V ++ G F+ + DR ++ G
Sbjct: 171 EHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEG 212
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.310 0.133 0.332
Lambda K H
0.267 0.0405 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,063,640
Number of Sequences: 36641
Number of extensions: 539322
Number of successful extensions: 1500
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 50
length of query: 411
length of database: 10,336,785
effective HSP length: 99
effective length of query: 312
effective length of database: 6,709,326
effective search space: 2093309712
effective search space used: 2093309712
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 60 (27.7 bits)