BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P11597
         (493 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4F2A-A nrPDB                                                          969   0.0  
4M4D-A nrPDB                                                          101   6e-22
1BP1-A nrPDB                                                          100   1e-21
6EZ3-A nrPDB                                                           29   4.6  

>4F2A-A nrPDB
          Length = 476

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/476 (98%), Positives = 474/476 (99%)

Query: 18  CSKGTSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLH 77
            SKGTSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLH
Sbjct: 1   ASKGTSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLH 60

Query: 78  NIQISHLSIASSQVELVEAKSIDVSIQNVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSA 137
           NIQISHLSIASSQVELVEAKSIDVSIQ+VSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSA
Sbjct: 61  NIQISHLSIASSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSA 120

Query: 138 IDLQINTQLTCDSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLK 197
           IDLQINTQLT DSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLK
Sbjct: 121 IDLQINTQLTADSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLK 180

Query: 198 GQICKEINVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKN 257
           GQICKEINVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYK+
Sbjct: 181 GQICKEINVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKD 240

Query: 258 VSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWG 317
           VSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWG
Sbjct: 241 VSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWG 300

Query: 318 FNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVNSSVMVKFLFPRPDQQHSVA 377
           FNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVV+SSVMVKFLFPRPDQQHSVA
Sbjct: 301 FNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPDQQHSVA 360

Query: 378 YTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSESVQSFLQSMITAVGIPE 437
           YTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSES+QSFLQSMITAVGIPE
Sbjct: 361 YTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSESIQSFLQSMITAVGIPE 420

Query: 438 VMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSLS 493
           VMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSLS
Sbjct: 421 VMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSLS 476


>4M4D-A nrPDB
          Length = 467

 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 155/339 (45%), Gaps = 21/339 (6%)

Query: 27  GIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSI 86
           G+V RIT   L     E    +Q    + + PD +G+  +  +G+ +Y  H+++I +  +
Sbjct: 8   GVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQNCEL 67

Query: 87  ASSQVELVEAKSIDVSIQNVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINTQL 146
             S ++L+  + + ++I + S+  +G  K       +L +  S D ++   + + ++  L
Sbjct: 68  RGSSLKLLPGQGLSLAISDSSIGVRGKWK---VRKSFLKLHGSFDLDV-KGVTISVDLLL 123

Query: 147 TCD-SGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEI- 204
             D SGR    A  C      L +H+ G    GW+  LF N I   L+ VL+ ++C+ I 
Sbjct: 124 GMDPSGRPTVSASGCSSRICDLDVHISGNV--GWLLNLFHNQIESKLQKVLENKVCEMIQ 181

Query: 205 NVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKNVSEDLPL 264
             +++ +  ++QT   +   D  +G+D SL   P   A  L+   KG    +N    +  
Sbjct: 182 KSVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVAT 241

Query: 265 PTFSPTLLGDSR-MLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTNQE 323
           PT + +L  DS+ M+YF  S+  F+  ++V  Q G L  S+  D         G   N +
Sbjct: 242 PTPTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLP---HDSGIRLNTK 298

Query: 324 IFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVNSSVM 362
            F+      P   Q+     K P +  +  G VV++ ++
Sbjct: 299 AFR------PFTPQIYK---KYPDMKLELLGTVVSAPIL 328


>1BP1-A nrPDB
          Length = 456

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 194/467 (41%), Gaps = 30/467 (6%)

Query: 25  EAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHL 84
             G+V RI++  L   + +    +Q   +R   PD +    +  LG+  Y  +++ I   
Sbjct: 2   NPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREF 61

Query: 85  SIASSQVELVEAKSIDVSIQNVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDS---AIDLQ 141
            + SSQ+ +V    +  SI N ++   G  K       +L +  + D  I+    + DL+
Sbjct: 62  QLPSSQISMVPNVGLKFSISNANIKISGKWK---AQKRFLKMSGNFDLSIEGMSISADLK 118

Query: 142 INTQLTCDSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQIC 201
           + +  T  SG+       C    + + +H+   +  GW+ QLF   I   L+  +  Q+C
Sbjct: 119 LGSNPT--SGKPTITCSSCSSHINSVHVHISKSKV-GWLIQLFHKKIESALRNKMNSQVC 175

Query: 202 KEI-NVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKNVSE 260
           +++ N +S+ +  + QT       D   G++  L   P  TA  L+   KG F  +N   
Sbjct: 176 EKVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHN 235

Query: 261 DLPLPTFSPTLL----GDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGD----EFKAV 312
               P F+P ++       RM+Y   S+  F++   V  + G L ++L  D    E K  
Sbjct: 236 P---PPFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFR 292

Query: 313 LETWGFNTNQEIFQEVVGGFPS-QAQVTVHCLKMPKISCQNKGVVVNSSVMVKFLFPRPD 371
           L T  F T      EV   FP+ + Q+ V     P +S Q  G+    +V V+     P+
Sbjct: 293 LTTKFFGT---FLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPN 349

Query: 372 QQHSVAYTFEEDIVTTVQASYSKKKLF-LSLLDFQITPKTVSNLTESSSESVQSFLQSMI 430
              +  +        +++ S    +L     LD  +     SN+     E +Q  +  ++
Sbjct: 350 SALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIV 409

Query: 431 TAVGIPEVMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMD 477
             + +P V  +L+  F  L     V L++++   +     FLL   D
Sbjct: 410 PILVLPRVNEKLQKGF-PLPTPARVQLYNVV---LQPHQNFLLFGAD 452


>6EZ3-A nrPDB
          Length = 234

 Score = 29.3 bits (64), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 323 EIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVNSSVMV 363
           +I++ +V  F + +     CLKM   + Q+KG  VN+S+ +
Sbjct: 120 DIYKTIVDQFNTDSNFKNSCLKMSLQALQSKGKNVNTSIEI 160


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4F2A-A nrPDB                                                          740   0.0  
1BP1-A nrPDB                                                          560   e-160
4M4D-A nrPDB                                                          468   e-132

Sequences not found previously or not previously below threshold:

3OPN-A nrPDB                                                           33   0.36 
2OWN-A nrPDB                                                           30   1.7  
3SG1-A nrPDB                                                           29   3.4  
1YQ1-A nrPDB                                                           29   4.1  
3PS0-A nrPDB                                                           29   4.8  


CONVERGED!
>4F2A-A nrPDB
          Length = 476

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/476 (98%), Positives = 474/476 (99%)

Query: 18  CSKGTSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLH 77
            SKGTSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLH
Sbjct: 1   ASKGTSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLH 60

Query: 78  NIQISHLSIASSQVELVEAKSIDVSIQNVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSA 137
           NIQISHLSIASSQVELVEAKSIDVSIQ+VSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSA
Sbjct: 61  NIQISHLSIASSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSA 120

Query: 138 IDLQINTQLTCDSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLK 197
           IDLQINTQLT DSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLK
Sbjct: 121 IDLQINTQLTADSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLK 180

Query: 198 GQICKEINVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKN 257
           GQICKEINVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYK+
Sbjct: 181 GQICKEINVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKD 240

Query: 258 VSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWG 317
           VSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWG
Sbjct: 241 VSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWG 300

Query: 318 FNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVNSSVMVKFLFPRPDQQHSVA 377
           FNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVV+SSVMVKFLFPRPDQQHSVA
Sbjct: 301 FNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPDQQHSVA 360

Query: 378 YTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSESVQSFLQSMITAVGIPE 437
           YTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSES+QSFLQSMITAVGIPE
Sbjct: 361 YTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSESIQSFLQSMITAVGIPE 420

Query: 438 VMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSLS 493
           VMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSLS
Sbjct: 421 VMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSLS 476


>1BP1-A nrPDB
          Length = 456

 Score =  560 bits (1444), Expect = e-160,   Method: Composition-based stats.
 Identities = 107/467 (22%), Positives = 194/467 (41%), Gaps = 30/467 (6%)

Query: 25  EAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHL 84
             G+V RI++  L   + +    +Q   +R   PD +    +  LG+  Y  +++ I   
Sbjct: 2   NPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREF 61

Query: 85  SIASSQVELVEAKSIDVSIQNVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDS---AIDLQ 141
            + SSQ+ +V    +  SI N ++   G  K       +L +  + D  I+    + DL+
Sbjct: 62  QLPSSQISMVPNVGLKFSISNANIKISGKWK---AQKRFLKMSGNFDLSIEGMSISADLK 118

Query: 142 INTQLTCDSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQIC 201
           + +  T  SG+       C    + + +H+   +  GW+ QLF   I   L+  +  Q+C
Sbjct: 119 LGSNPT--SGKPTITCSSCSSHINSVHVHISKSKV-GWLIQLFHKKIESALRNKMNSQVC 175

Query: 202 KEI-NVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKNVSE 260
           +++ N +S+ +  + QT       D   G++  L   P  TA  L+   KG F  +N   
Sbjct: 176 EKVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHN 235

Query: 261 DLPLPTFSPTLLG----DSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGD----EFKAV 312
               P F+P ++       RM+Y   S+  F++   V  + G L ++L  D    E K  
Sbjct: 236 P---PPFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFR 292

Query: 313 LETWGFNTNQEIFQEVVGGFPS-QAQVTVHCLKMPKISCQNKGVVVNSSVMVKFLFPRPD 371
           L T  F T      EV   FP+ + Q+ V     P +S Q  G+    +V V+     P+
Sbjct: 293 LTTKFFGT---FLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPN 349

Query: 372 QQHSVAYTFEEDIVTTVQASYSKKKLF-LSLLDFQITPKTVSNLTESSSESVQSFLQSMI 430
              +  +        +++ S    +L     LD  +     SN+     E +Q  +  ++
Sbjct: 350 SALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIV 409

Query: 431 TAVGIPEVMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMD 477
             + +P V  +L+  F  L     V L++++   +     FLL   D
Sbjct: 410 PILVLPRVNEKLQKGF-PLPTPARVQLYNVV---LQPHQNFLLFGAD 452


>4M4D-A nrPDB
          Length = 467

 Score =  468 bits (1204), Expect = e-132,   Method: Composition-based stats.
 Identities = 102/474 (21%), Positives = 193/474 (40%), Gaps = 40/474 (8%)

Query: 25  EAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHL 84
             G+V RIT   L     E    +Q    + + PD +G+  +  +G+ +Y  H+++I + 
Sbjct: 6   NPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQNC 65

Query: 85  SIASSQVELVEAKSIDVSIQNVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINT 144
            +  S ++L+  + + ++I + S+  +G  K       +L +  S D ++   + + ++ 
Sbjct: 66  ELRGSSLKLLPGQGLSLAISDSSIGVRGKWK---VRKSFLKLHGSFDLDV-KGVTISVDL 121

Query: 145 QLTCD-SGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKE 203
            L  D SGR    A  C      L +H+ G    GW+  LF N I   L+ VL+ ++C+ 
Sbjct: 122 LLGMDPSGRPTVSASGCSSRICDLDVHISGNV--GWLLNLFHNQIESKLQKVLENKVCEM 179

Query: 204 I-NVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKNVSEDL 262
           I   +++ +  ++QT   +   D  +G+D SL   P   A  L+   KG    +N    +
Sbjct: 180 IQKSVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPV 239

Query: 263 PLPTFSPTLLGDSR-MLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTN 321
             PT + +L  DS+ M+YF  S+  F+  ++V  Q G L  S+  D         G   N
Sbjct: 240 ATPTPTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLP---HDSGIRLN 296

Query: 322 QEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVNSSVM--------------VKFLF 367
            + F+      P   Q+     K P +  +  G VV++ ++              ++   
Sbjct: 297 TKAFR------PFTPQIYK---KYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFV 347

Query: 368 PRPDQQHSVAYTFEEDIVTTVQASYSKKKLF-LSLLDFQITPKTVSNLTESSSESVQSFL 426
             P       +            +++  K+  +   D        S +   +    Q+FL
Sbjct: 348 ILPTSAREPVFRLGVVTNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFL 407

Query: 427 QSMITAVGIPEVMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGF 480
              +     P+V + L   F  L   + + L D+   +   R  FL L  +  +
Sbjct: 408 NYYLLNSLYPDVNAELAQGF-PLPLPRHIQLHDL---DFQIRKDFLYLGANVQY 457


>3OPN-A nrPDB
          Length = 232

 Score = 32.8 bits (73), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 22/141 (15%)

Query: 101 VSIQNVSVVFKGTLKYGYTTAWWLGIDQS---IDFEIDSAIDLQINTQLTCDSGRVRTDA 157
           +S+    +  KG  K  Y +   L ++++      EI+    L I +     +       
Sbjct: 1   MSLDGTELRLKGE-KLRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFT------- 52

Query: 158 PDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEINVISNIMADFVQT 217
                      + LQ   +  +   + TN +++ ++   +  + ++ N  + ++ADF Q 
Sbjct: 53  ----------DVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG 102

Query: 218 RAASILSDGDIGVDISLTGDP 238
           R +    D    + + L   P
Sbjct: 103 RPSFTSID-VSFISLDLILPP 122


>2OWN-A nrPDB
          Length = 262

 Score = 30.5 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 323 EIFQEVVGGFPSQAQVTVHCLKMPK-ISCQNKGVVVNSSVMVKFLFPRPDQQHSVAYTFE 381
           +I  E+V   P Q++V     ++P+ IS +     +     V+F    P++  + A+ F+
Sbjct: 129 KILPELVA--PYQSEVVKRIPRLPRPISFEATDTTITKPYHVRFFDIDPNRHVNNAHYFD 186


>3SG1-A nrPDB
          Length = 458

 Score = 29.3 bits (64), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 105 NVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINTQLTCDSGRVRTDAPD-CYLS 163
           N  VVF+        +   L I+   ++       +Q+   L   +GR R   P  C + 
Sbjct: 86  NAEVVFENNQVTIDASKE-LNIEAPFEYVRKMRASVQVMGPLLARNGRARIALPGGCAIG 144

Query: 164 FHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKG 198
              +  HL+G    G   Q+   F+   ++  LKG
Sbjct: 145 SRPIDQHLKGFEAMGAKVQVGNGFVEAYVEGELKG 179


>1YQ1-A nrPDB
          Length = 208

 Score = 29.3 bits (64), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 440 SRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSL 492
             +E   +        + F+I+N  +   +   L+  D  F + ++VD L +L
Sbjct: 117 EEVEKFRSEFFLPARNTYFNILNGLLEKSNSGFLIGSDITFADLVVVDNLLTL 169


>3PS0-A nrPDB
          Length = 328

 Score = 28.9 bits (63), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 24/141 (17%)

Query: 298 GRLMLSLMGDEFKAVLETWGFNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVV 357
           G ++ +L GDE  A LE                     AQ  V     P    Q    V 
Sbjct: 147 GYMIPALRGDEIPAQLE---------------------AQFHVRFSNKPVSGSQAIFNVE 185

Query: 358 NSSVMVKFLFPRPDQQHSVAYTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTES 417
            SS +  F F   +   +V  TF E +    +    K K   S +   +      N    
Sbjct: 186 VSSALYTFSFELDEDLIAVPSTFGEKVKGEEELERQKAKRVKSAI-KALYSLLSGNFGGK 244

Query: 418 SSESVQS--FLQSMITAVGIP 436
            S  + S   +  ++T    P
Sbjct: 245 RSRFLPSMKLMSLVVTKTDFP 265


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.312    0.128    0.326 

Lambda     K      H
   0.267   0.0392    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,833,246
Number of Sequences: 36641
Number of extensions: 553191
Number of successful extensions: 1605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 18
length of query: 493
length of database: 10,336,785
effective HSP length: 101
effective length of query: 392
effective length of database: 6,636,044
effective search space: 2601329248
effective search space used: 2601329248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 61 (28.2 bits)