BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P11086
         (282 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3KQY-A nrPDB                                                          580   e-166
5YJI-A nrPDB                                                          186   1e-47
2A14-A nrPDB                                                          178   2e-45
5YJF-A nrPDB                                                          175   2e-44
4G97-A nrPDB                                                           31   0.74 
5LB8-A nrPDB                                                           28   4.6  
5LBA-B nrPDB                                                           28   5.4  
1VRM-A nrPDB                                                           28   5.4  
3OFK-A nrPDB                                                           28   5.7  

>3KQY-A nrPDB
          Length = 289

 Score =  580 bits (1494), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MSGADRSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRC 60
           MSGADRSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRC
Sbjct: 1   MSGADRSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRC 60

Query: 61  LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGA 120
           LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGA
Sbjct: 61  LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGA 120

Query: 121 FNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVS 180
           FNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVS
Sbjct: 121 FNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVS 180

Query: 181 AFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVR 240
           AFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVR
Sbjct: 181 AFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVR 240

Query: 241 EALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282
           EALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL
Sbjct: 241 EALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282


>5YJI-A nrPDB
          Length = 284

 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 151/253 (59%), Gaps = 5/253 (1%)

Query: 29  RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLL 88
            F PR YL   Y+      C  N +    L+ L + F  G V G  LIDIGSGPT+YQLL
Sbjct: 34  HFNPRDYLEKYYSFGSRH-CAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLL 92

Query: 89  SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148
           SAC  F +I ++D+ + N  EL +WL++EPGAF+WS    + C +EG      +KE +LR
Sbjct: 93  SACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 152

Query: 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208
             +K+VL  DV Q QPLG G   P PAD L+S  CL+A  PDL +++ AL ++ +LL+PG
Sbjct: 153 RAIKQVLKCDVTQSQPLG-GVSLP-PADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 210

Query: 209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDD 268
           G L+++ AL+ S+Y+ GE + + +P+  E VR+A+  +GY +      ++  +  +   +
Sbjct: 211 GFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE--VISQNYSSTTSN 268

Query: 269 VKGVFFAWAQKVG 281
            +G+F    +K G
Sbjct: 269 NEGLFSLVGRKPG 281


>2A14-A nrPDB
          Length = 263

 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 144/234 (61%), Gaps = 16/234 (6%)

Query: 27  YQR-FEPRAYLRNNYA-----PPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGS 80
           YQ+ F PR YL   Y+      P  ++   N      L CL +TF  G + G TLIDIGS
Sbjct: 11  YQKHFLPRDYLATYYSFDGSPSPEAEMLKFN------LECLHKTFGPGGLQGDTLIDIGS 64

Query: 81  GPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW 140
           GPT+YQ+L+AC  F+DIT++DF + NR+EL +WL++EPGA++W+   + AC +EG    W
Sbjct: 65  GPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRW 124

Query: 141 QDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLP-ADALVSAFCLEAVSPDLASFQRALD 199
           ++KE +LRA VKRVL  DVH   PL   +PA LP AD +++   +E     L +++ AL 
Sbjct: 125 EEKEEKLRAAVKRVLKCDVHLGNPL---APAVLPLADCVLTLLAMECACCSLDAYRAALC 181

Query: 200 HITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 253
           ++ +LL+PGGHL+    L    Y+ G+   + V + + EV +A++ +G+ +  L
Sbjct: 182 NLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 235


>5YJF-A nrPDB
          Length = 284

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 146/252 (57%), Gaps = 5/252 (1%)

Query: 29  RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLL 88
            F PR YL   Y            +    L+ L + F    V G  LIDIGSGPT+YQLL
Sbjct: 34  HFNPRDYLEKYYKFGSRHSAESQ-ILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLL 92

Query: 89  SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148
           SAC  F++I +TD+ + N QEL +WL+  P AF+WS    + C +EG      +KE +LR
Sbjct: 93  SACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGNRVKGPEKEEKLR 152

Query: 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208
             VK+VL  DV Q QPLGA  P P PAD ++S  CL+A  PDL ++ RAL ++ +LL+PG
Sbjct: 153 QAVKQVLKCDVTQSQPLGA-VPLP-PADCVLSTLCLDAACPDLPTYCRALRNLGSLLKPG 210

Query: 209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDD 268
           G L+++ AL+ S+Y+ GE + + +P+  E V  A+  +GY +      ++     + + +
Sbjct: 211 GFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFE--VISQSYSSTMAN 268

Query: 269 VKGVFFAWAQKV 280
            +G+F   A+K+
Sbjct: 269 NEGLFSLVARKL 280


>4G97-A nrPDB
          Length = 270

 Score = 30.8 bits (68), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 47  LCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVN 106
            CN       ++   +  FA    + R L  I   P    LL A   F D    + LEV+
Sbjct: 60  FCNLYKNASIRMPETSSEFAWETHAARNLAHIAPLPRQAFLLVAVEGFNDHEAAEILEVD 119

Query: 107 RQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149
           + E GR L    G  +  + ++   +IE +     D E+ + +
Sbjct: 120 QAEFGRLLSTASGEISRQVATR-LMIIEDEPLIAMDIEQMVES 161


>5LB8-A nrPDB
          Length = 518

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 20/83 (24%)

Query: 142 DKERQLRARVKRVLPID--------------------VHQPQPLGAGSPAPLPADALVSA 181
           D ER++R+ +K+V   D                    V    P GAG        AL++ 
Sbjct: 3   DPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK 62

Query: 182 FCLEAVSPDLASFQRALDHITTL 204
                VSP +A  Q  +DH+ TL
Sbjct: 63  GITIVVSPLIALIQDQVDHLLTL 85


>5LBA-B nrPDB
          Length = 445

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 20/83 (24%)

Query: 142 DKERQLRARVKRVLPID--------------------VHQPQPLGAGSPAPLPADALVSA 181
           D ER++R+ +K+V   D                    V    P GAG        AL++ 
Sbjct: 3   DPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK 62

Query: 182 FCLEAVSPDLASFQRALDHITTL 204
                VSP +A  Q  +DH+ TL
Sbjct: 63  GITIVVSPLIALIQDQVDHLLTL 85


>1VRM-A nrPDB
          Length = 325

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 214 IGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVD-DVKGV 272
           +G L E W   G      VP S EE+ EAL  +GYK        M   ++ GV  D+ G+
Sbjct: 107 VGRLLELWGFTGNYENLRVP-SREEIEEALKHTGYKNVLFDDKNMRVMVKNGVKIDLGGI 165

Query: 273 FFAWA 277
              +A
Sbjct: 166 AKGYA 170


>3OFK-A nrPDB
          Length = 216

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 190 DLASFQRALDHITTLLRPGGHLLLIGALEES---W-YLAG-EARLTVVPVSEEEV 239
           D+   + A+D++  +L PGGHL+   A + +   W ++AG E  +T++  +  EV
Sbjct: 129 DMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEALTEV 183


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3KQY-A nrPDB                                                          482   e-137
5YJI-A nrPDB                                                          428   e-120
5YJF-A nrPDB                                                          414   e-116
2A14-A nrPDB                                                          362   e-100

Sequences not found previously or not previously below threshold:

3CF4-A nrPDB                                                           33   0.14 
1D2C-A nrPDB                                                           33   0.16 
2VA8-A nrPDB                                                           32   0.33 
3BM3-A nrPDB                                                           32   0.40 
3NVS-A nrPDB                                                           31   0.59 
3OFK-A nrPDB                                                           31   0.66 
5HH9-A nrPDB                                                           30   1.4  
1RI1-A nrPDB                                                           29   2.2  
4KXR-B nrPDB                                                           29   3.0  
5VBB-A nrPDB                                                           28   5.6  
1ZZG-A nrPDB                                                           27   7.1  


CONVERGED!
>3KQY-A nrPDB
          Length = 289

 Score =  482 bits (1241), Expect = e-137,   Method: Composition-based stats.
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MSGADRSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRC 60
           MSGADRSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRC
Sbjct: 1   MSGADRSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRC 60

Query: 61  LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGA 120
           LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGA
Sbjct: 61  LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGA 120

Query: 121 FNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVS 180
           FNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVS
Sbjct: 121 FNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVS 180

Query: 181 AFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVR 240
           AFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVR
Sbjct: 181 AFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVR 240

Query: 241 EALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282
           EALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL
Sbjct: 241 EALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282


>5YJI-A nrPDB
          Length = 284

 Score =  428 bits (1101), Expect = e-120,   Method: Composition-based stats.
 Identities = 100/253 (39%), Positives = 151/253 (59%), Gaps = 5/253 (1%)

Query: 29  RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLL 88
            F PR YL   Y+      C  N +    L+ L + F  G V G  LIDIGSGPT+YQLL
Sbjct: 34  HFNPRDYLEKYYSFGSRH-CAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLL 92

Query: 89  SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148
           SAC  F +I ++D+ + N  EL +WL++EPGAF+WS    + C +EG      +KE +LR
Sbjct: 93  SACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 152

Query: 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208
             +K+VL  DV Q QPLG G   P PAD L+S  CL+A  PDL +++ AL ++ +LL+PG
Sbjct: 153 RAIKQVLKCDVTQSQPLG-GVSLP-PADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 210

Query: 209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDD 268
           G L+++ AL+ S+Y+ GE + + +P+  E VR+A+  +GY +      ++  +  +   +
Sbjct: 211 GFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE--VISQNYSSTTSN 268

Query: 269 VKGVFFAWAQKVG 281
            +G+F    +K G
Sbjct: 269 NEGLFSLVGRKPG 281


>5YJF-A nrPDB
          Length = 284

 Score =  414 bits (1064), Expect = e-116,   Method: Composition-based stats.
 Identities = 98/252 (38%), Positives = 146/252 (57%), Gaps = 5/252 (1%)

Query: 29  RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLL 88
            F PR YL   Y            +    L+ L + F    V G  LIDIGSGPT+YQLL
Sbjct: 34  HFNPRDYLEKYYKFGSRHSAESQ-ILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLL 92

Query: 89  SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148
           SAC  F++I +TD+ + N QEL +WL+  P AF+WS    + C +EG      +KE +LR
Sbjct: 93  SACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGNRVKGPEKEEKLR 152

Query: 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208
             VK+VL  DV Q QPLGA  P P PAD ++S  CL+A  PDL ++ RAL ++ +LL+PG
Sbjct: 153 QAVKQVLKCDVTQSQPLGA-VPLP-PADCVLSTLCLDAACPDLPTYCRALRNLGSLLKPG 210

Query: 209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDD 268
           G L+++ AL+ S+Y+ GE + + +P+  E V  A+  +GY +      ++     + + +
Sbjct: 211 GFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFE--VISQSYSSTMAN 268

Query: 269 VKGVFFAWAQKV 280
            +G+F   A+K+
Sbjct: 269 NEGLFSLVARKL 280


>2A14-A nrPDB
          Length = 263

 Score =  362 bits (928), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/258 (37%), Positives = 148/258 (57%), Gaps = 17/258 (6%)

Query: 28  QRFEPRAYLRNNYAP-----PRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGP 82
           + F PR YL   Y+      P  ++   N      L CL +TF  G + G TLIDIGSGP
Sbjct: 13  KHFLPRDYLATYYSFDGSPSPEAEMLKFN------LECLHKTFGPGGLQGDTLIDIGSGP 66

Query: 83  TVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQD 142
           T+YQ+L+AC  F+DIT++DF + NR+EL +WL++EPGA++W+   + AC +EG    W++
Sbjct: 67  TIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEE 126

Query: 143 KERQLRARVKRVLPIDVHQPQPLGAGSPAPLP-ADALVSAFCLEAVSPDLASFQRALDHI 201
           KE +LRA VKRVL  DVH   PL   +PA LP AD +++   +E     L +++ AL ++
Sbjct: 127 KEEKLRAAVKRVLKCDVHLGNPL---APAVLPLADCVLTLLAMECACCSLDAYRAALCNL 183

Query: 202 TTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAH 261
            +LL+PGGHL+    L    Y+ G+   + V + + EV +A++ +G+ +  L     P  
Sbjct: 184 ASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHS--PQS 241

Query: 262 LQTGVDDVKGVFFAWAQK 279
                    GV    A+K
Sbjct: 242 YSVTNAANNGVCCIVARK 259


>3CF4-A nrPDB
          Length = 807

 Score = 33.1 bits (74), Expect = 0.14,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 89/272 (32%), Gaps = 36/272 (13%)

Query: 14  PDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGR 73
           P+ A G   V    + F  R ++         D+           + L + F  G     
Sbjct: 524 PNYAGGTKDVYYIAEEFLKRNFIVVTTGCGAMDIGMFKDADG---KTLYERF-PGGFQCG 579

Query: 74  TLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGA--FNWSMYSQHA- 130
            L +IGS  +   +  A      I     LE N  E+G ++    GA    W  +SQ A 
Sbjct: 580 GLANIGSCVSNAHITGAAEKVAAIFAQRTLEGNLAEIGDYILNRVGACGLAWGAFSQKAS 639

Query: 131 -----CLIEG-KGECWQDKERQLRARVKRVLPID---VHQPQPLGAGSPAPLPADALVSA 181
                C I G          +  RA + +    D   V+  +  G   P P   + L++ 
Sbjct: 640 SIGTGCNIFGIPAVLGPHSSKYRRALIAKTYEEDKWKVYDARN-GQEMPIPPAPEFLLTT 698

Query: 182 ----------FCLEAVSPDLASFQRA--LDHITTLLRPGGHLLLIGALEESWYLAGEARL 229
                          + P   S  RA  L H   L +      L G   E W+       
Sbjct: 699 AETWQEAIPMMAKACIRPSDNSMGRAIKLTHWMELHKK----YLGGKEPEDWWKFVRTE- 753

Query: 230 TVVPVSEEE--VREALVRSGYKVRDLRTYIMP 259
             +P++  E  ++E     G+++   R  I+ 
Sbjct: 754 ADLPLATREALLKELEKEHGWEIDWKRKKIIS 785


>1D2C-A nrPDB
          Length = 292

 Score = 32.8 bits (73), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 32/142 (22%)

Query: 75  LIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQEL--GRWLQEEPGAFNWSMYSQHACL 132
           ++D+  G  V  ++     F  +T  D  +   +     RW + +  AF+          
Sbjct: 60  VLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALKERWNRRKEPAFD---------- 108

Query: 133 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDL 191
                  W  +E       K V         P G G  A +    L ++F  L     D 
Sbjct: 109 ------KWVIEEANWLTLDKDV---------PAGDGFDAVI---CLGNSFAHLPDSKGDQ 150

Query: 192 ASFQRALDHITTLLRPGGHLLL 213
           +  + AL +I +++RPGG L++
Sbjct: 151 SEHRLALKNIASMVRPGGLLVI 172


>2VA8-A nrPDB
          Length = 715

 Score = 32.0 bits (71), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 106 NRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 146
           N +++ +WL  EP A NW        LIEG    + +++++
Sbjct: 187 NYKQIAKWLGAEPVATNWRPVP----LIEG--VIYPERKKK 221


>3BM3-A nrPDB
          Length = 272

 Score = 31.6 bits (70), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 223 LAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282
           +  E    +    E++VREA + +GY    L      A    G    + +F     K G+
Sbjct: 58  MLEEKAFEIYKEYEKQVREAYLSAGYSREKLEQSFQQARFSRGGKAFEIIFTKLLNKFGI 117


>3NVS-A nrPDB
          Length = 450

 Score = 30.8 bits (68), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 203 TLLRPGGHLLLIGALEESWYLAGEA----RLTVVPVSEEEVR------EALVRSGYKVRD 252
           + + PG  L+   A   S++LA  A     + V  + +  ++      +AL + G ++  
Sbjct: 255 SYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEW 314

Query: 253 LRTYIMPA 260
              Y++  
Sbjct: 315 GDDYVIAR 322


>3OFK-A nrPDB
          Length = 216

 Score = 30.8 bits (68), Expect = 0.66,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 190 DLASFQRALDHITTLLRPGGHLL 212
           D+   + A+D++  +L PGGHL+
Sbjct: 129 DMTQMRTAIDNMVKMLAPGGHLV 151


>5HH9-A nrPDB
          Length = 390

 Score = 29.7 bits (65), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 185 EAVSPDLASFQRALDHITTLLRPGG-----HLLLIGALEESWYLAGEAR 228
           E + P + +F RA D+  TL+ PGG     H L +G   E     G+A 
Sbjct: 247 EHLVPSIPTFSRA-DNFGTLMTPGGYHAFEHRLALGTAFELHLQLGKAE 294


>1RI1-A nrPDB
          Length = 298

 Score = 29.3 bits (64), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 144 ERQLRAR-VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHIT 202
           + ++RAR +KR   +        G         D + S F          S   A  +I 
Sbjct: 102 DARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIA 161

Query: 203 TLLRPGGHLLLIGALE---ESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIM 258
             LRPGG+ ++           Y  G        +  E++ +  + S   VR+ R  ++
Sbjct: 162 RHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMES---VREYRFTLL 217


>4KXR-B nrPDB
          Length = 194

 Score = 28.5 bits (62), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 74  TLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWS 124
           +L+D  +GP V QL+ A   F    +TD   V   E+ R + E   A+ W+
Sbjct: 51  SLMDAWAGPVVMQLMEAAKPFVR-WLTDLC-VQLSEVERQIHEIVRAYEWA 99


>5VBB-A nrPDB
          Length = 261

 Score = 27.7 bits (60), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 17  APGQAAVASAYQRFEPRAYLRNNYAPPRGDLCN-----PNGVGPWKLRCLAQTFATGEVS 71
           A  +AA  SAY+ F+ R   +   A  RG +        + +G       A T       
Sbjct: 77  ALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRNSTEGRAHTMCIEGSQ 136

Query: 72  G 72
           G
Sbjct: 137 G 137


>1ZZG-A nrPDB
          Length = 415

 Score = 27.4 bits (59), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 214 IGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 250
           +  LE + YL G+    ++    E   EAL  +G +V
Sbjct: 325 VEGLEAASYLFGKTLFQLLKAEAEATYEALAEAGQRV 361


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.131    0.368 

Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,035,616
Number of Sequences: 36641
Number of extensions: 436918
Number of successful extensions: 1236
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 28
length of query: 282
length of database: 10,336,785
effective HSP length: 96
effective length of query: 186
effective length of database: 6,819,249
effective search space: 1268380314
effective search space used: 1268380314
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 58 (27.0 bits)