BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P10796
(181 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5IU0-J nrPDB 380 e-106
5WSK-E nrPDB 238 8e-64
1RCO-S nrPDB 212 7e-56
1RSC-M nrPDB 106 5e-24
5NV3-I nrPDB 78 2e-15
1BWV-S nrPDB 73 7e-14
4F0K-B nrPDB 72 1e-13
1SVD-M nrPDB 71 2e-13
1BXN-I nrPDB 67 3e-12
4COQ-A nrPDB 29 1.3
1IAW-A nrPDB 28 1.6
1Q32-A nrPDB 28 1.7
6OGD-C nrPDB 28 2.6
2I3B-A nrPDB 28 2.6
4DWS-C nrPDB 28 2.7
3RKU-A nrPDB 28 3.1
6B7K-A nrPDB 27 5.8
2VBF-A nrPDB 27 6.9
6HLU-A nrPDB 26 8.7
>5IU0-J nrPDB
Length = 181
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60
MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP
Sbjct: 1 MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60
Query: 61 PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120
PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR
Sbjct: 61 PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120
Query: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180
YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180
Query: 181 A 181
A
Sbjct: 181 A 181
>5WSK-E nrPDB
Length = 175
Score = 238 bits (608), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 106/161 (65%), Positives = 130/161 (80%), Gaps = 1/161 (0%)
Query: 16 AQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPD 75
+ AT VAPF GLKS+A PV+R++N SNGGR+ CM+VWP G KKFETLSYLP
Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPP 67
Query: 76 LTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDS 135
L+ L K+VDYL+R+KW+PC+EF + GF++REH +PGYYDGRYWTMWKLP+FGCTD+
Sbjct: 68 LSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDA 126
Query: 136 AQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176
QV+ EVEE KKEYP A++RIIGFDN RQVQC+SFIA+KPP
Sbjct: 127 TQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPP 167
>1RCO-S nrPDB
Length = 123
Score = 212 bits (540), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 93/123 (75%), Positives = 108/123 (87%)
Query: 56 MKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPG 115
M+VWP + KK+ETLSYLP LT +LA++VDYLL NKW+PC+EFE +HGFVYREH N+PG
Sbjct: 1 MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPG 60
Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
YYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ R+VQCISFIAYKP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKP 120
Query: 176 PSF 178
+
Sbjct: 121 AGY 123
>1RSC-M nrPDB
Length = 111
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 14/120 (11%)
Query: 56 MKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPG 115
MK P +++FET SYLP L+D ++A +++Y++ + P +EF EH N
Sbjct: 3 MKTLP--KERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEF--------NEHSNPEE 52
Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
+Y WTMWKLPLF C QVL EV EC+ EY +IR+ GFDN ++ Q +SFI ++P
Sbjct: 53 FY----WTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTVSFIVHRP 108
>5NV3-I nrPDB
Length = 129
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 14/108 (12%)
Query: 70 LSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPL 129
S+LPDLTD +++ +VDY L W V EH + P + YW MW +P+
Sbjct: 8 FSFLPDLTDEQISAQVDYCLGRGWA-----------VSLEHTDDP-HPRNTYWEMWGMPM 55
Query: 130 FGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCI--SFIAYKP 175
F D V+ E++EC+K +PG +IRI FD+TR + + SFI +P
Sbjct: 56 FDLRDPKGVMIELDECRKAWPGRYIRINAFDSTRGFETVTMSFIVNRP 103
>1BWV-S nrPDB
Length = 138
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 69 TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
T S+LPDLTD ++ K++DY++ K +E+ + YW +W LP
Sbjct: 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY------------TNDIHPRNAYWEIWGLP 54
Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQ--CISFIAYKP 175
LF TD A VL E+ C+K +I+++GF + R ++ ISFI +P
Sbjct: 55 LFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRP 103
>4F0K-B nrPDB
Length = 138
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 69 TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
T S+LPDLTD ++ K++DY++ K +E+ + +W MW LP
Sbjct: 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY------------TNDIHPRNSFWEMWGLP 54
Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQ--CISFIAYKP 175
LF TD A VL E+ C+K +I+++GF + R ++ ISFI +P
Sbjct: 55 LFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRP 103
>1SVD-M nrPDB
Length = 110
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
Query: 66 KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEF-ELEHGFVYREHGNTPGYYDGRYWTM 124
K+ET SYLP + + ++ Y + W P +E E+++ +YW M
Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM-------------NQYWYM 58
Query: 125 WKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYK 174
WKLP FG + VL E+E C+ YP ++++ +DN Q ++F+ Y+
Sbjct: 59 WKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYR 108
>1BXN-I nrPDB
Length = 139
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 69 TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
T S+LP+LTD ++ K+++Y L W +E+ + P + YW M+ LP
Sbjct: 7 TFSFLPELTDEQITKQLEYCLNQGWAVGLEYT-----------DDP-HPRNTYWEMFGLP 54
Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCI--SFIAYKP 175
+F D+A +L E+ + +P +IR+ FD+T V+ + SFI +P
Sbjct: 55 MFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>4COQ-A nrPDB
Length = 247
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 132 CTDSAQ--VLKEVEECKKEYPGAFIRIIGFDNTRQVQCIS 169
C++ + V KE E +E F +++GFDN R VQ ++
Sbjct: 202 CSEGVRWIVFKEPVEMSREQLEKFRKVMGFDNNRPVQPLN 241
>1IAW-A nrPDB
Length = 317
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 39 ANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLP-DLTD 78
AN D+ + GR +K+WP GK + L ++P D+ D
Sbjct: 143 ANRDLKRRLTPEGRAQVVKLWPDHGKLQENLLLHIPGDVRD 183
>1Q32-A nrPDB
Length = 544
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 88 LLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEEC 145
+LRNK+ V ++ + V R G TP + +++ G D++QV KE+E C
Sbjct: 406 MLRNKFK--VFYKQDPAMVTRRRGTTPAH--SKFYMHCATNSAGPCDASQVFKELEWC 459
>6OGD-C nrPDB
Length = 633
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 67 FETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWK 126
F L+ PD V +A VD+ +R CV+ + E+ + GN DG + +
Sbjct: 314 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLI 373
Query: 127 LPLFGCTDS 135
L DS
Sbjct: 374 KELRSALDS 382
>2I3B-A nrPDB
Length = 189
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 37 RKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVE 80
R+ D+ +++ G +S + + PP GK++ Y+ DLT E
Sbjct: 45 RRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFE 88
>4DWS-C nrPDB
Length = 546
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 67 FETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWK 126
F L+ PD V +A VD+ +R CV+ + E+ + GN DG + +
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLI 286
Query: 127 LPLFGCTDS 135
L DS
Sbjct: 287 KELRSALDS 295
>3RKU-A nrPDB
Length = 287
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 135 SAQVLKEVEECKK----EYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180
+A+ L+++EE KK E+P A + + D T+ + FI P F D
Sbjct: 66 AARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKD 115
>6B7K-A nrPDB
Length = 301
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEEC 145
YY+GRYW + + FG SA L +
Sbjct: 87 YYNGRYWLYYSVSSFGSNTSAIGLASTDRI 116
>2VBF-A nrPDB
Length = 570
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 62 IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGF-VYRE-HGNTPGYYDG 119
I K+ L ++ D + +E+ +R K P G+ V RE HG T Y D
Sbjct: 439 IADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDI 498
Query: 120 RYWTMWKLP-LFGCTDSAQVLKEVEECKKEY 149
W KLP FG T+ +V+ ++ + E+
Sbjct: 499 PMWNYSKLPETFGATED-RVVSKIVRTENEF 528
>6HLU-A nrPDB
Length = 974
Score = 26.2 bits (56), Expect = 8.7, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 4 SMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIG 63
S+ S + S Q T +AP LKS ++R +DI + S S K+W
Sbjct: 265 SLKSLTELQLSSNQITDIAPLASLKSLTELQLSRNQISDIAPLESLN---SLSKLWLNGN 321
Query: 64 K-KKFETLSYLPDLTDVELA 82
+ L+ L LT++EL+
Sbjct: 322 QITDIAPLASLNSLTELELS 341
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5IU0-J nrPDB 319 6e-88
5WSK-E nrPDB 271 1e-73
1RCO-S nrPDB 222 8e-59
1RSC-M nrPDB 166 7e-42
5NV3-I nrPDB 151 2e-37
1BWV-S nrPDB 149 9e-37
4F0K-B nrPDB 147 3e-36
1BXN-I nrPDB 146 6e-36
1SVD-M nrPDB 140 4e-34
Sequences not found previously or not previously below threshold:
1TZ9-A nrPDB 31 0.21
5CH8-A nrPDB 31 0.35
3B8K-A nrPDB 29 1.1
6CT0-0 nrPDB 29 1.3
5DUD-A nrPDB 29 1.4
4DAG-A nrPDB 29 1.6
2WHK-A nrPDB 28 2.0
6DQX-A nrPDB 28 2.2
1MI2-A nrPDB 27 5.2
CONVERGED!
>5IU0-J nrPDB
Length = 181
Score = 319 bits (816), Expect = 6e-88, Method: Composition-based stats.
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60
MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP
Sbjct: 1 MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60
Query: 61 PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120
PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR
Sbjct: 61 PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120
Query: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180
YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180
Query: 181 A 181
A
Sbjct: 181 A 181
>5WSK-E nrPDB
Length = 175
Score = 271 bits (692), Expect = 1e-73, Method: Composition-based stats.
Identities = 106/162 (65%), Positives = 130/162 (80%), Gaps = 1/162 (0%)
Query: 16 AQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPD 75
+ AT VAPF GLKS+A PV+R++N SNGGR+ CM+VWP G KKFETLSYLP
Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPP 67
Query: 76 LTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDS 135
L+ L K+VDYL+R+KW+PC+EF + GF++REH +PGYYDGRYWTMWKLP+FGCTD+
Sbjct: 68 LSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDA 126
Query: 136 AQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 177
QV+ EVEE KKEYP A++RIIGFDN RQVQC+SFIA+KPP
Sbjct: 127 TQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 168
>1RCO-S nrPDB
Length = 123
Score = 222 bits (565), Expect = 8e-59, Method: Composition-based stats.
Identities = 93/123 (75%), Positives = 108/123 (87%)
Query: 56 MKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPG 115
M+VWP + KK+ETLSYLP LT +LA++VDYLL NKW+PC+EFE +HGFVYREH N+PG
Sbjct: 1 MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPG 60
Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
YYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ R+VQCISFIAYKP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKP 120
Query: 176 PSF 178
+
Sbjct: 121 AGY 123
>1RSC-M nrPDB
Length = 111
Score = 166 bits (419), Expect = 7e-42, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 14/123 (11%)
Query: 56 MKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPG 115
MK P +++FET SYLP L+D ++A +++Y++ + P +EF EH N
Sbjct: 3 MKTLP--KERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEF--------NEHSNPEE 52
Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
+ YWTMWKLPLF C QVL EV EC+ EY +IR+ GFDN ++ Q +SFI ++P
Sbjct: 53 F----YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTVSFIVHRP 108
Query: 176 PSF 178
+
Sbjct: 109 GRY 111
>5NV3-I nrPDB
Length = 129
Score = 151 bits (381), Expect = 2e-37, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 70 LSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPL 129
S+LPDLTD +++ +VDY L W +E + YW MW +P+
Sbjct: 8 FSFLPDLTDEQISAQVDYCLGRGWAVSLEH------------TDDPHPRNTYWEMWGMPM 55
Query: 130 FGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCI--SFIAYKP 175
F D V+ E++EC+K +PG +IRI FD+TR + + SFI +P
Sbjct: 56 FDLRDPKGVMIELDECRKAWPGRYIRINAFDSTRGFETVTMSFIVNRP 103
>1BWV-S nrPDB
Length = 138
Score = 149 bits (375), Expect = 9e-37, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 69 TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
T S+LPDLTD ++ K++DY++ K +E+ + YW +W LP
Sbjct: 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY------------TNDIHPRNAYWEIWGLP 54
Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQ--CISFIAYKP---PSF 178
LF TD A VL E+ C+K +I+++GF + R ++ ISFI +P P F
Sbjct: 55 LFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGF 109
>4F0K-B nrPDB
Length = 138
Score = 147 bits (370), Expect = 3e-36, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 69 TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
T S+LPDLTD ++ K++DY++ K +E+ + +W MW LP
Sbjct: 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY------------TNDIHPRNSFWEMWGLP 54
Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQ--CISFIAYKP---PSF 178
LF TD A VL E+ C+K +I+++GF + R ++ ISFI +P P F
Sbjct: 55 LFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRPKHEPGF 109
>1BXN-I nrPDB
Length = 139
Score = 146 bits (368), Expect = 6e-36, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 69 TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
T S+LP+LTD ++ K+++Y L W +E+ + YW M+ LP
Sbjct: 7 TFSFLPELTDEQITKQLEYCLNQGWAVGLEY------------TDDPHPRNTYWEMFGLP 54
Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCI--SFIAYKP---PSF 178
+F D+A +L E+ + +P +IR+ FD+T V+ + SFI +P P F
Sbjct: 55 MFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGF 109
>1SVD-M nrPDB
Length = 110
Score = 140 bits (352), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
Query: 66 KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEF-ELEHGFVYREHGNTPGYYDGRYWTM 124
K+ET SYLP + + ++ Y + W P +E E+++ +YW M
Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM-------------NQYWYM 58
Query: 125 WKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYK 174
WKLP FG + VL E+E C+ YP ++++ +DN Q ++F+ Y+
Sbjct: 59 WKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYR 108
>1TZ9-A nrPDB
Length = 367
Score = 31.3 bits (69), Expect = 0.21, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 59 WPPIGKKKFETLSYL-PDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 117
W ++F+ L + +T+ +L + + Y L C E ++ G +
Sbjct: 169 WEEERLQQFQELKAMYAGVTEEDLVENLRYFLERVIPVCEEENIKMG----------IHP 218
Query: 118 DGRYWTMWKLP 128
D W ++ LP
Sbjct: 219 DDPPWEIFGLP 229
>5CH8-A nrPDB
Length = 279
Score = 30.9 bits (68), Expect = 0.35, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 20/144 (13%)
Query: 50 GGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYRE 109
G ++SC K P + T+SY D +D + Y+ + V + R
Sbjct: 31 GDKLSCSKGNCPEVEATGATVSY--DFSDSTITDTAGYIAVDHTNSAVVLAFRGSYSVRN 88
Query: 110 H-------GNTPGYYDG-----RYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRII 157
PG DG +W+ WKL D ++KE++E + P + ++
Sbjct: 89 WVADATFVHTNPGLCDGCLAELGFWSSWKL----VRD--DIIKELKEVVAQNPNYELVVV 142
Query: 158 GFDNTRQVQCISFIAYKPPSFTDA 181
G V ++ + + A
Sbjct: 143 GHSLGAAVATLAATDLRGKGYPSA 166
>3B8K-A nrPDB
Length = 239
Score = 29.0 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 108 REHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQC 167
RE P + G +T+ L +FG + + ++ + C + +++ DN +
Sbjct: 141 REGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDV 200
Query: 168 ISFI 171
S +
Sbjct: 201 ASMM 204
>6CT0-0 nrPDB
Length = 647
Score = 29.0 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 108 REHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQC 167
RE P + G +T+ L +FG + + ++ + C + +++ DN +
Sbjct: 549 REGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDV 608
Query: 168 ISFI 171
S +
Sbjct: 609 ASMM 612
>5DUD-A nrPDB
Length = 310
Score = 28.6 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 97 VEFELEHGFVYREHGNTPGYYDGRYWTMWKLPL 129
VEFE + F G D WT W+LP+
Sbjct: 62 VEFETDGWFALTGAGCEARLDDNAVWTGWRLPM 94
>4DAG-A nrPDB
Length = 415
Score = 28.6 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 76 LTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTD- 134
+TD ELA+ V Y+ + + E + G G Y M +LP+FG D
Sbjct: 205 MTDAELARAVSYMPTSAGQIKLMLENRAMVRRKGFGILIGVYGSSVIYMVQLPIFGVIDT 264
Query: 135 SAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
++K C E G + ++ D + Y P
Sbjct: 265 PCWIIKAAPSC-SEKDGNYACLLREDQGWYCKNAGSTVYYP 304
>2WHK-A nrPDB
Length = 336
Score = 28.2 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 19/110 (17%)
Query: 40 NNDITSITSNGG--RVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNK----- 92
N D+ S NGG ++S P F+T +T+ + +D
Sbjct: 87 NGDLMSYWKNGGIPQISLHLANPAFQSGHFKT-----PITNDQYKNILDSATAEGKRLNA 141
Query: 93 ----WIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQV 138
++ G P + W W L + D+ ++
Sbjct: 142 MLSKIADGLQELENQGVPVLFR---PLHEMNGEWFWWGLTSYNQKDNERI 188
>6DQX-A nrPDB
Length = 574
Score = 28.2 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 45 SITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCV 97
SI N G V ++ K+ F+T S + L+ ++ A + + +
Sbjct: 472 SILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSINI 524
>1MI2-A nrPDB
Length = 73
Score = 26.7 bits (57), Expect = 5.2, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 45 SITSNGGRVSCMKVWPPIGKKKFETLSYLPD 75
++ ++ R C+K P + K ++LS P
Sbjct: 1 AVVASELRCQCLKTLPRVDFKNIQSLSVTPP 31
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.306 0.123 0.346
Lambda K H
0.267 0.0368 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,600,727
Number of Sequences: 36641
Number of extensions: 242337
Number of successful extensions: 607
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 45
length of query: 181
length of database: 10,336,785
effective HSP length: 91
effective length of query: 90
effective length of database: 7,002,454
effective search space: 630220860
effective search space used: 630220860
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 55 (25.9 bits)