BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P10796
         (181 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5IU0-J nrPDB                                                          380   e-106
5WSK-E nrPDB                                                          238   8e-64
1RCO-S nrPDB                                                          212   7e-56
1RSC-M nrPDB                                                          106   5e-24
5NV3-I nrPDB                                                           78   2e-15
1BWV-S nrPDB                                                           73   7e-14
4F0K-B nrPDB                                                           72   1e-13
1SVD-M nrPDB                                                           71   2e-13
1BXN-I nrPDB                                                           67   3e-12
4COQ-A nrPDB                                                           29   1.3  
1IAW-A nrPDB                                                           28   1.6  
1Q32-A nrPDB                                                           28   1.7  
6OGD-C nrPDB                                                           28   2.6  
2I3B-A nrPDB                                                           28   2.6  
4DWS-C nrPDB                                                           28   2.7  
3RKU-A nrPDB                                                           28   3.1  
6B7K-A nrPDB                                                           27   5.8  
2VBF-A nrPDB                                                           27   6.9  
6HLU-A nrPDB                                                           26   8.7  

>5IU0-J nrPDB
          Length = 181

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60
           MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 61  PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120
           PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180
           YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180

Query: 181 A 181
           A
Sbjct: 181 A 181


>5WSK-E nrPDB
          Length = 175

 Score =  238 bits (608), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 106/161 (65%), Positives = 130/161 (80%), Gaps = 1/161 (0%)

Query: 16  AQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPD 75
           + AT VAPF GLKS+A  PV+R++N       SNGGR+ CM+VWP  G KKFETLSYLP 
Sbjct: 8   SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPP 67

Query: 76  LTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDS 135
           L+   L K+VDYL+R+KW+PC+EF  + GF++REH  +PGYYDGRYWTMWKLP+FGCTD+
Sbjct: 68  LSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDA 126

Query: 136 AQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176
            QV+ EVEE KKEYP A++RIIGFDN RQVQC+SFIA+KPP
Sbjct: 127 TQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPP 167


>1RCO-S nrPDB
          Length = 123

 Score =  212 bits (540), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 93/123 (75%), Positives = 108/123 (87%)

Query: 56  MKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPG 115
           M+VWP +  KK+ETLSYLP LT  +LA++VDYLL NKW+PC+EFE +HGFVYREH N+PG
Sbjct: 1   MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPG 60

Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
           YYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ R+VQCISFIAYKP
Sbjct: 61  YYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKP 120

Query: 176 PSF 178
             +
Sbjct: 121 AGY 123


>1RSC-M nrPDB
          Length = 111

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 14/120 (11%)

Query: 56  MKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPG 115
           MK  P   +++FET SYLP L+D ++A +++Y++   + P +EF         EH N   
Sbjct: 3   MKTLP--KERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEF--------NEHSNPEE 52

Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
           +Y    WTMWKLPLF C    QVL EV EC+ EY   +IR+ GFDN ++ Q +SFI ++P
Sbjct: 53  FY----WTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTVSFIVHRP 108


>5NV3-I nrPDB
          Length = 129

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 14/108 (12%)

Query: 70  LSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPL 129
            S+LPDLTD +++ +VDY L   W            V  EH + P +    YW MW +P+
Sbjct: 8   FSFLPDLTDEQISAQVDYCLGRGWA-----------VSLEHTDDP-HPRNTYWEMWGMPM 55

Query: 130 FGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCI--SFIAYKP 175
           F   D   V+ E++EC+K +PG +IRI  FD+TR  + +  SFI  +P
Sbjct: 56  FDLRDPKGVMIELDECRKAWPGRYIRINAFDSTRGFETVTMSFIVNRP 103


>1BWV-S nrPDB
          Length = 138

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 14/109 (12%)

Query: 69  TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
           T S+LPDLTD ++ K++DY++  K    +E+                +    YW +W LP
Sbjct: 7   TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY------------TNDIHPRNAYWEIWGLP 54

Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQ--CISFIAYKP 175
           LF  TD A VL E+  C+K     +I+++GF + R ++   ISFI  +P
Sbjct: 55  LFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRP 103


>4F0K-B nrPDB
          Length = 138

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 14/109 (12%)

Query: 69  TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
           T S+LPDLTD ++ K++DY++  K    +E+                +    +W MW LP
Sbjct: 7   TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY------------TNDIHPRNSFWEMWGLP 54

Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQ--CISFIAYKP 175
           LF  TD A VL E+  C+K     +I+++GF + R ++   ISFI  +P
Sbjct: 55  LFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRP 103


>1SVD-M nrPDB
          Length = 110

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 14/110 (12%)

Query: 66  KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEF-ELEHGFVYREHGNTPGYYDGRYWTM 124
           K+ET SYLP +    +  ++ Y +   W P +E  E+++                +YW M
Sbjct: 12  KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM-------------NQYWYM 58

Query: 125 WKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYK 174
           WKLP FG  +   VL E+E C+  YP   ++++ +DN  Q   ++F+ Y+
Sbjct: 59  WKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYR 108


>1BXN-I nrPDB
          Length = 139

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 14/109 (12%)

Query: 69  TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
           T S+LP+LTD ++ K+++Y L   W   +E+            + P +    YW M+ LP
Sbjct: 7   TFSFLPELTDEQITKQLEYCLNQGWAVGLEYT-----------DDP-HPRNTYWEMFGLP 54

Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCI--SFIAYKP 175
           +F   D+A +L E+   +  +P  +IR+  FD+T  V+ +  SFI  +P
Sbjct: 55  MFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103


>4COQ-A nrPDB
          Length = 247

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 132 CTDSAQ--VLKEVEECKKEYPGAFIRIIGFDNTRQVQCIS 169
           C++  +  V KE  E  +E    F +++GFDN R VQ ++
Sbjct: 202 CSEGVRWIVFKEPVEMSREQLEKFRKVMGFDNNRPVQPLN 241


>1IAW-A nrPDB
          Length = 317

 Score = 28.5 bits (62), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 39  ANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLP-DLTD 78
           AN D+    +  GR   +K+WP  GK +   L ++P D+ D
Sbjct: 143 ANRDLKRRLTPEGRAQVVKLWPDHGKLQENLLLHIPGDVRD 183


>1Q32-A nrPDB
          Length = 544

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 88  LLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEEC 145
           +LRNK+   V ++ +   V R  G TP +   +++        G  D++QV KE+E C
Sbjct: 406 MLRNKFK--VFYKQDPAMVTRRRGTTPAH--SKFYMHCATNSAGPCDASQVFKELEWC 459


>6OGD-C nrPDB
          Length = 633

 Score = 27.7 bits (60), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 67  FETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWK 126
           F  L+  PD   V +A  VD+ +R     CV+ + E+     + GN     DG  + +  
Sbjct: 314 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLI 373

Query: 127 LPLFGCTDS 135
             L    DS
Sbjct: 374 KELRSALDS 382


>2I3B-A nrPDB
          Length = 189

 Score = 27.7 bits (60), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 37 RKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVE 80
          R+   D+ +++   G +S + + PP GK++     Y+ DLT  E
Sbjct: 45 RRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFE 88


>4DWS-C nrPDB
          Length = 546

 Score = 27.7 bits (60), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 67  FETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWK 126
           F  L+  PD   V +A  VD+ +R     CV+ + E+     + GN     DG  + +  
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLI 286

Query: 127 LPLFGCTDS 135
             L    DS
Sbjct: 287 KELRSALDS 295


>3RKU-A nrPDB
          Length = 287

 Score = 27.7 bits (60), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 135 SAQVLKEVEECKK----EYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180
           +A+ L+++EE KK    E+P A + +   D T+  +   FI   P  F D
Sbjct: 66  AARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKD 115


>6B7K-A nrPDB
          Length = 301

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEEC 145
           YY+GRYW  + +  FG   SA  L   +  
Sbjct: 87  YYNGRYWLYYSVSSFGSNTSAIGLASTDRI 116


>2VBF-A nrPDB
          Length = 570

 Score = 26.6 bits (57), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 62  IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGF-VYRE-HGNTPGYYDG 119
           I  K+   L ++ D +     +E+   +R K  P        G+ V RE HG T  Y D 
Sbjct: 439 IADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDI 498

Query: 120 RYWTMWKLP-LFGCTDSAQVLKEVEECKKEY 149
             W   KLP  FG T+  +V+ ++   + E+
Sbjct: 499 PMWNYSKLPETFGATED-RVVSKIVRTENEF 528


>6HLU-A nrPDB
          Length = 974

 Score = 26.2 bits (56), Expect = 8.7,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 4   SMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIG 63
           S+ S   +  S  Q T +AP   LKS     ++R   +DI  + S     S  K+W    
Sbjct: 265 SLKSLTELQLSSNQITDIAPLASLKSLTELQLSRNQISDIAPLESLN---SLSKLWLNGN 321

Query: 64  K-KKFETLSYLPDLTDVELA 82
           +      L+ L  LT++EL+
Sbjct: 322 QITDIAPLASLNSLTELELS 341


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5IU0-J nrPDB                                                          319   6e-88
5WSK-E nrPDB                                                          271   1e-73
1RCO-S nrPDB                                                          222   8e-59
1RSC-M nrPDB                                                          166   7e-42
5NV3-I nrPDB                                                          151   2e-37
1BWV-S nrPDB                                                          149   9e-37
4F0K-B nrPDB                                                          147   3e-36
1BXN-I nrPDB                                                          146   6e-36
1SVD-M nrPDB                                                          140   4e-34

Sequences not found previously or not previously below threshold:

1TZ9-A nrPDB                                                           31   0.21 
5CH8-A nrPDB                                                           31   0.35 
3B8K-A nrPDB                                                           29   1.1  
6CT0-0 nrPDB                                                           29   1.3  
5DUD-A nrPDB                                                           29   1.4  
4DAG-A nrPDB                                                           29   1.6  
2WHK-A nrPDB                                                           28   2.0  
6DQX-A nrPDB                                                           28   2.2  
1MI2-A nrPDB                                                           27   5.2  


CONVERGED!
>5IU0-J nrPDB
          Length = 181

 Score =  319 bits (816), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60
           MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 61  PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120
           PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180
           YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTD 180

Query: 181 A 181
           A
Sbjct: 181 A 181


>5WSK-E nrPDB
          Length = 175

 Score =  271 bits (692), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/162 (65%), Positives = 130/162 (80%), Gaps = 1/162 (0%)

Query: 16  AQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPD 75
           + AT VAPF GLKS+A  PV+R++N       SNGGR+ CM+VWP  G KKFETLSYLP 
Sbjct: 8   SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPP 67

Query: 76  LTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDS 135
           L+   L K+VDYL+R+KW+PC+EF  + GF++REH  +PGYYDGRYWTMWKLP+FGCTD+
Sbjct: 68  LSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDA 126

Query: 136 AQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 177
            QV+ EVEE KKEYP A++RIIGFDN RQVQC+SFIA+KPP 
Sbjct: 127 TQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 168


>1RCO-S nrPDB
          Length = 123

 Score =  222 bits (565), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 93/123 (75%), Positives = 108/123 (87%)

Query: 56  MKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPG 115
           M+VWP +  KK+ETLSYLP LT  +LA++VDYLL NKW+PC+EFE +HGFVYREH N+PG
Sbjct: 1   MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPG 60

Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
           YYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ R+VQCISFIAYKP
Sbjct: 61  YYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKP 120

Query: 176 PSF 178
             +
Sbjct: 121 AGY 123


>1RSC-M nrPDB
          Length = 111

 Score =  166 bits (419), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 14/123 (11%)

Query: 56  MKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPG 115
           MK  P   +++FET SYLP L+D ++A +++Y++   + P +EF         EH N   
Sbjct: 3   MKTLP--KERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEF--------NEHSNPEE 52

Query: 116 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
           +    YWTMWKLPLF C    QVL EV EC+ EY   +IR+ GFDN ++ Q +SFI ++P
Sbjct: 53  F----YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTVSFIVHRP 108

Query: 176 PSF 178
             +
Sbjct: 109 GRY 111


>5NV3-I nrPDB
          Length = 129

 Score =  151 bits (381), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 14/108 (12%)

Query: 70  LSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPL 129
            S+LPDLTD +++ +VDY L   W   +E                 +    YW MW +P+
Sbjct: 8   FSFLPDLTDEQISAQVDYCLGRGWAVSLEH------------TDDPHPRNTYWEMWGMPM 55

Query: 130 FGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCI--SFIAYKP 175
           F   D   V+ E++EC+K +PG +IRI  FD+TR  + +  SFI  +P
Sbjct: 56  FDLRDPKGVMIELDECRKAWPGRYIRINAFDSTRGFETVTMSFIVNRP 103


>1BWV-S nrPDB
          Length = 138

 Score =  149 bits (375), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 17/115 (14%)

Query: 69  TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
           T S+LPDLTD ++ K++DY++  K    +E+                +    YW +W LP
Sbjct: 7   TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY------------TNDIHPRNAYWEIWGLP 54

Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQ--CISFIAYKP---PSF 178
           LF  TD A VL E+  C+K     +I+++GF + R ++   ISFI  +P   P F
Sbjct: 55  LFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGF 109


>4F0K-B nrPDB
          Length = 138

 Score =  147 bits (370), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 17/115 (14%)

Query: 69  TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
           T S+LPDLTD ++ K++DY++  K    +E+                +    +W MW LP
Sbjct: 7   TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY------------TNDIHPRNSFWEMWGLP 54

Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQ--CISFIAYKP---PSF 178
           LF  TD A VL E+  C+K     +I+++GF + R ++   ISFI  +P   P F
Sbjct: 55  LFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRPKHEPGF 109


>1BXN-I nrPDB
          Length = 139

 Score =  146 bits (368), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 17/115 (14%)

Query: 69  TLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLP 128
           T S+LP+LTD ++ K+++Y L   W   +E+                +    YW M+ LP
Sbjct: 7   TFSFLPELTDEQITKQLEYCLNQGWAVGLEY------------TDDPHPRNTYWEMFGLP 54

Query: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCI--SFIAYKP---PSF 178
           +F   D+A +L E+   +  +P  +IR+  FD+T  V+ +  SFI  +P   P F
Sbjct: 55  MFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGF 109


>1SVD-M nrPDB
          Length = 110

 Score =  140 bits (352), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 14/110 (12%)

Query: 66  KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEF-ELEHGFVYREHGNTPGYYDGRYWTM 124
           K+ET SYLP +    +  ++ Y +   W P +E  E+++                +YW M
Sbjct: 12  KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM-------------NQYWYM 58

Query: 125 WKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYK 174
           WKLP FG  +   VL E+E C+  YP   ++++ +DN  Q   ++F+ Y+
Sbjct: 59  WKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYR 108


>1TZ9-A nrPDB
          Length = 367

 Score = 31.3 bits (69), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 59  WPPIGKKKFETLSYL-PDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 117
           W     ++F+ L  +   +T+ +L + + Y L      C E  ++ G           + 
Sbjct: 169 WEEERLQQFQELKAMYAGVTEEDLVENLRYFLERVIPVCEEENIKMG----------IHP 218

Query: 118 DGRYWTMWKLP 128
           D   W ++ LP
Sbjct: 219 DDPPWEIFGLP 229


>5CH8-A nrPDB
          Length = 279

 Score = 30.9 bits (68), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 50  GGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYRE 109
           G ++SC K   P  +    T+SY  D +D  +     Y+  +     V       +  R 
Sbjct: 31  GDKLSCSKGNCPEVEATGATVSY--DFSDSTITDTAGYIAVDHTNSAVVLAFRGSYSVRN 88

Query: 110 H-------GNTPGYYDG-----RYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRII 157
                      PG  DG      +W+ WKL      D   ++KE++E   + P   + ++
Sbjct: 89  WVADATFVHTNPGLCDGCLAELGFWSSWKL----VRD--DIIKELKEVVAQNPNYELVVV 142

Query: 158 GFDNTRQVQCISFIAYKPPSFTDA 181
           G      V  ++    +   +  A
Sbjct: 143 GHSLGAAVATLAATDLRGKGYPSA 166


>3B8K-A nrPDB
          Length = 239

 Score = 29.0 bits (63), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 108 REHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQC 167
           RE    P  + G  +T+  L +FG  + + ++   + C      +  +++  DN +    
Sbjct: 141 REGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDV 200

Query: 168 ISFI 171
            S +
Sbjct: 201 ASMM 204


>6CT0-0 nrPDB
          Length = 647

 Score = 29.0 bits (63), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 108 REHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQC 167
           RE    P  + G  +T+  L +FG  + + ++   + C      +  +++  DN +    
Sbjct: 549 REGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDV 608

Query: 168 ISFI 171
            S +
Sbjct: 609 ASMM 612


>5DUD-A nrPDB
          Length = 310

 Score = 28.6 bits (62), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 97  VEFELEHGFVYREHGNTPGYYDGRYWTMWKLPL 129
           VEFE +  F     G      D   WT W+LP+
Sbjct: 62  VEFETDGWFALTGAGCEARLDDNAVWTGWRLPM 94


>4DAG-A nrPDB
          Length = 415

 Score = 28.6 bits (62), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 76  LTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTD- 134
           +TD ELA+ V Y+  +     +  E       +  G   G Y      M +LP+FG  D 
Sbjct: 205 MTDAELARAVSYMPTSAGQIKLMLENRAMVRRKGFGILIGVYGSSVIYMVQLPIFGVIDT 264

Query: 135 SAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175
              ++K    C  E  G +  ++  D     +      Y P
Sbjct: 265 PCWIIKAAPSC-SEKDGNYACLLREDQGWYCKNAGSTVYYP 304


>2WHK-A nrPDB
          Length = 336

 Score = 28.2 bits (61), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 19/110 (17%)

Query: 40  NNDITSITSNGG--RVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNK----- 92
           N D+ S   NGG  ++S     P      F+T      +T+ +    +D           
Sbjct: 87  NGDLMSYWKNGGIPQISLHLANPAFQSGHFKT-----PITNDQYKNILDSATAEGKRLNA 141

Query: 93  ----WIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQV 138
                   ++     G         P +     W  W L  +   D+ ++
Sbjct: 142 MLSKIADGLQELENQGVPVLFR---PLHEMNGEWFWWGLTSYNQKDNERI 188


>6DQX-A nrPDB
          Length = 574

 Score = 28.2 bits (61), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 45  SITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCV 97
           SI  N G V  ++      K+ F+T S +  L+ ++ A +    +       +
Sbjct: 472 SILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSINI 524


>1MI2-A nrPDB
          Length = 73

 Score = 26.7 bits (57), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 45 SITSNGGRVSCMKVWPPIGKKKFETLSYLPD 75
          ++ ++  R  C+K  P +  K  ++LS  P 
Sbjct: 1  AVVASELRCQCLKTLPRVDFKNIQSLSVTPP 31


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.306    0.123    0.346 

Lambda     K      H
   0.267   0.0368    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,600,727
Number of Sequences: 36641
Number of extensions: 242337
Number of successful extensions: 607
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 45
length of query: 181
length of database: 10,336,785
effective HSP length: 91
effective length of query: 90
effective length of database: 7,002,454
effective search space: 630220860
effective search space used: 630220860
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 55 (25.9 bits)