BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P10363
         (409 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4LIM-A nrPDB                                                          813   0.0  
4LIK-A nrPDB                                                          256   1e-68
1V33-A nrPDB                                                           52   6e-07
1G71-A nrPDB                                                           50   2e-06
6N2O-A nrPDB                                                           32   0.47 
4V6W-Az nrPDB                                                          30   1.8  
3AB1-A nrPDB                                                           30   2.1  
5BZV-A nrPDB                                                           30   2.5  
3AIC-A nrPDB                                                           30   2.5  
2QE0-A nrPDB                                                           29   3.2  
3DZ8-A nrPDB                                                           28   5.9  
2JO6-A nrPDB                                                           28   7.1  
3RAB-A nrPDB                                                           28   8.4  
6H3W-A nrPDB                                                           28   9.6  

>4LIM-A nrPDB
          Length = 391

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/390 (99%), Positives = 389/390 (99%)

Query: 7   TNGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ 66
            NGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ
Sbjct: 2   ANGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ 61

Query: 67  DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG 126
           DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG
Sbjct: 62  DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG 121

Query: 127 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN 186
           AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN
Sbjct: 122 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN 181

Query: 187 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL 246
           VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL
Sbjct: 182 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL 241

Query: 247 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL 306
           PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL
Sbjct: 242 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL 301

Query: 307 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND 366
           MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND
Sbjct: 302 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND 361

Query: 367 VSLTALQPFINQFQAYVSSLLKNELGSVKR 396
           VSLTALQPFINQFQAYVSSLLKNELGSVKR
Sbjct: 362 VSLTALQPFINQFQAYVSSLLKNELGSVKR 391


>4LIK-A nrPDB
          Length = 392

 Score =  256 bits (654), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/385 (33%), Positives = 219/385 (56%), Gaps = 16/385 (4%)

Query: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74
           ++ YY+ L+P+   + WLN+         +REF+   +   Y RY SFN+  D + +++K
Sbjct: 17  LKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQK 76

Query: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134
            NP + +IGA+Y+  P + +T+     +A EKELVFDIDM DYD  R CCS A +C KCW
Sbjct: 77  MNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCW 136

Query: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194
             +++A++I + AL+EDFG+K  +WV+SGRRG HCWV D+  R L+   R  +++Y++++
Sbjct: 137 TLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLV 196

Query: 195 R-DRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQH--AIQTLLPALYD 251
           +  ++  K++ L    HP + +S+  +K +F    L  Q+  E+ +    I  L+P    
Sbjct: 197 KGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIH 256

Query: 252 KQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYP 311
            +L  S +K        +S ++W  + ++A+      K D +   L   + +++L   +P
Sbjct: 257 DELQQSFQK------SHNSLQRWEHLKKVASRYQNNIKNDKYGPWL---EWEIMLQYCFP 307

Query: 312 KLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----ESFAPEKAPKLIDLQTEMEKNNDV 367
           +LD+ V+K   HLLK+PF +HP TG + VPID    + F P   P +  +  E++   D 
Sbjct: 308 RLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDATRDY 367

Query: 368 SLTALQPFINQFQAYVSSLLKNELG 392
             T+L P++  F+ ++ +L K+  G
Sbjct: 368 KKTSLAPYVKVFEHFLENLDKSRKG 392


>1V33-A nrPDB
          Length = 366

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 15/168 (8%)

Query: 45  REFAMAFRS-GAYKRYNSFNSVQDFKAQIEKANP-DRFEIGAIYNKPPRERDTLLKSELK 102
           REF       G   R N +  ++D +  I    P   +   A+Y KP          E++
Sbjct: 55  REFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAPYAVYSSVALYEKP---------QEME 105

Query: 103 A-LEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVF 161
             L  ELVFDID  D    R       VC  C       ++ T   LRE+ G+ D   ++
Sbjct: 106 GWLGTELVFDIDAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIY 165

Query: 162 SGRRGAHCWVSDKRARALTDVQRRNVLDYVNV--IRDRNTDKRLALKR 207
           SG RG H  V D+ A  L    R  +L +V+   I D    ++L L +
Sbjct: 166 SG-RGYHIRVLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNK 212


>1G71-A nrPDB
          Length = 347

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 9/159 (5%)

Query: 44  NREFAMAFRS-GAYKRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELK 102
           +REF       G   R N ++ ++D +  I   +P        + + PRE +    +EL 
Sbjct: 34  SREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREMEGWRGAEL- 92

Query: 103 ALEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFS 162
                 VFDID  D    R       VC  C +      K T   LRE+ G+++   V+S
Sbjct: 93  ------VFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYS 146

Query: 163 GRRGAHCWVSDKRARALTDVQRRNVLDYVNVIRDRNTDK 201
           G RG H  + D+ A  L    R  +L +++     N ++
Sbjct: 147 G-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEE 184


>6N2O-A nrPDB
          Length = 573

 Score = 32.0 bits (71), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 26  KHIFNWLNH--SPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIE-KANPDRFEI 82
           KHI   L H  +  P+    N E          KR+N  NSV DF   +E +      ++
Sbjct: 420 KHIATGLEHGETGAPNYSPANHELMH------RKRFNKQNSVLDFYKNMEVEGVEGEADV 473

Query: 83  GAI-------YNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCC 124
           G I         +   +R T    ++KA+  +L++ + + DYDAF   C
Sbjct: 474 GIITWGSTIGVVREAMQRLTAEGLKVKAMYPKLLWPMPVADYDAFGATC 522


>4V6W-Az nrPDB
          Length = 844

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 28/71 (39%)

Query: 284 LFKGPKQDSHIIKLRECKEDLVLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPID 343
           L++GP  D   I ++ C  D  LM    K+     K   +     F    ATG  C  + 
Sbjct: 358 LYEGPHDDEAAIAVKSCDPDGPLMMYISKMVPTSDKGRFYAFGRVFAGKVATGQKCRIMG 417

Query: 344 ESFAPEKAPKL 354
            ++ P K   L
Sbjct: 418 PNYTPGKKEDL 428


>3AB1-A nrPDB
          Length = 360

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 21  SLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEKANPDRF 80
           +LYP KHI++       P+ D++   +A A      +RYN    + +   +  K +   F
Sbjct: 55  ALYPEKHIYDVAGFPEVPAIDLVESLWAQA------ERYNPDVVLNETVTKYTKLDDGTF 108

Query: 81  EIGAIYNKPPRERDTLLKSELKALE 105
           E         R R  L+ + L A E
Sbjct: 109 ETRTNTGNVYRSRAVLIAAGLGAFE 133


>5BZV-A nrPDB
          Length = 400

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 27/122 (22%)

Query: 188 LDYVNVIRDRNTDKRLA--LKRPYHPHLARSL--EQLKPFFVSIMLEEQNPW-------- 235
           LDY+ +  D+   + L   L+ P   ++ R L  EQ+KPFF+ ++L+    +        
Sbjct: 13  LDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDY 72

Query: 236 ---EDDQHAIQTLLPALYD-----------KQLIDSL-KKYWLDNPRRSSKEKWNDIDQI 280
              E     IQT+ P ++            +++ID++  +  +D   +   +++  I+Q+
Sbjct: 73  LTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQV 132

Query: 281 AT 282
            T
Sbjct: 133 VT 134


>3AIC-A nrPDB
          Length = 844

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 305 VLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKN 364
           +LMT +P  D E  +Q ++ + A   IH        P+  + A +     I+ +   EKN
Sbjct: 52  LLMTWWP--DQETQRQYVNYMNAQLGIHQTYNTATSPLQLNLAAQTIQTKIEEKITAEKN 109

Query: 365 NDVSLTALQPFINQFQAYVS 384
            +     +  F+    A+ S
Sbjct: 110 TNWLRQTISAFVKTQSAWNS 129


>2QE0-A nrPDB
          Length = 475

 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 172 SDKRARALTDVQRRNVLDYVNVIRDRNTDKRLALKRPYHPHL 213
           +DK A ALT+++R   L    +     TD RLA + P+ P L
Sbjct: 342 NDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVL 383


>3DZ8-A nrPDB
          Length = 191

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 61  SFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSE-LKALEKELVFDI 112
           SFN+VQD+  QI+  + D  ++  + NK   E + ++ +E  + L ++L FD 
Sbjct: 110 SFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDF 162


>2JO6-A nrPDB
          Length = 113

 Score = 28.1 bits (61), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 200 DKRLALKRPYHPHLARSLEQLKPFFVSIML 229
           D+++A+ RPYH     ++  + PFF S +L
Sbjct: 28  DEQVAIFRPYHSDQVFAISNIDPFFESSVL 57


>3RAB-A nrPDB
          Length = 169

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 61  SFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSE 100
           SFN+VQD+  QI+  + D  ++  + NK   E + ++ SE
Sbjct: 92  SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 131


>6H3W-A nrPDB
          Length = 250

 Score = 27.7 bits (60), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 329 FCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNNDVSLTAL-QPFINQFQAYVSSLL 387
           FC     G  C   +  FA E        QT+ +K+ +++LTAL   F     AY++++L
Sbjct: 130 FCRCVKNGEKCSSSNWDFANEMKDYYSGKQTKFDKDLNLALTALHHAFRGTSSAYIATML 189


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4LIM-A nrPDB                                                          663   0.0  
4LIK-A nrPDB                                                          560   e-160
1V33-A nrPDB                                                          220   7e-58
1G71-A nrPDB                                                          219   1e-57

Sequences not found previously or not previously below threshold:

5OFN-A nrPDB                                                           67   1e-11
3UP5-A nrPDB                                                           34   0.12 
1EU8-A nrPDB                                                           33   0.27 
4B4Y-A nrPDB                                                           32   0.34 
2BQX-A nrPDB                                                           32   0.48 
3AIC-A nrPDB                                                           32   0.69 
4V7F-o nrPDB                                                           30   2.7  
1MLI-A nrPDB                                                           29   3.9  
3IB3-A nrPDB                                                           29   4.5  
6CMW-A nrPDB                                                           28   6.3  
2P4F-A nrPDB                                                           28   8.2  

>4LIM-A nrPDB
          Length = 391

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/390 (99%), Positives = 389/390 (99%)

Query: 7   TNGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ 66
            NGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ
Sbjct: 2   ANGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ 61

Query: 67  DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG 126
           DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG
Sbjct: 62  DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG 121

Query: 127 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN 186
           AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN
Sbjct: 122 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN 181

Query: 187 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL 246
           VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL
Sbjct: 182 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL 241

Query: 247 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL 306
           PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL
Sbjct: 242 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL 301

Query: 307 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND 366
           MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND
Sbjct: 302 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND 361

Query: 367 VSLTALQPFINQFQAYVSSLLKNELGSVKR 396
           VSLTALQPFINQFQAYVSSLLKNELGSVKR
Sbjct: 362 VSLTALQPFINQFQAYVSSLLKNELGSVKR 391


>4LIK-A nrPDB
          Length = 392

 Score =  560 bits (1442), Expect = e-160,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 219/385 (56%), Gaps = 16/385 (4%)

Query: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74
           ++ YY+ L+P+   + WLN+         +REF+   +   Y RY SFN+  D + +++K
Sbjct: 17  LKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQK 76

Query: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134
            NP + +IGA+Y+  P + +T+     +A EKELVFDIDM DYD  R CCS A +C KCW
Sbjct: 77  MNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCW 136

Query: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194
             +++A++I + AL+EDFG+K  +WV+SGRRG HCWV D+  R L+   R  +++Y++++
Sbjct: 137 TLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLV 196

Query: 195 R-DRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQH--AIQTLLPALYD 251
           +  ++  K++ L    HP + +S+  +K +F    L  Q+  E+ +    I  L+P    
Sbjct: 197 KGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIH 256

Query: 252 KQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYP 311
            +L  S +K        +S ++W  + ++A+      K D +   L   + +++L   +P
Sbjct: 257 DELQQSFQK------SHNSLQRWEHLKKVASRYQNNIKNDKYGPWL---EWEIMLQYCFP 307

Query: 312 KLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----ESFAPEKAPKLIDLQTEMEKNNDV 367
           +LD+ V+K   HLLK+PF +HP TG + VPID    + F P   P +  +  E++   D 
Sbjct: 308 RLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDATRDY 367

Query: 368 SLTALQPFINQFQAYVSSLLKNELG 392
             T+L P++  F+ ++ +L K+  G
Sbjct: 368 KKTSLAPYVKVFEHFLENLDKSRKG 392


>1V33-A nrPDB
          Length = 366

 Score =  220 bits (561), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 11/167 (6%)

Query: 45  REFAMAFRS-GAYKRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKA 103
           REF       G   R N +  ++D +  I    P          + P+E +         
Sbjct: 55  REFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAPYAVYSSVALYEKPQEMEGW------- 107

Query: 104 LEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSG 163
           L  ELVFDID  D    R       VC  C       ++ T   LRE+ G+ D   ++SG
Sbjct: 108 LGTELVFDIDAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSG 167

Query: 164 RRGAHCWVSDKRARALTDVQRRNVLDYVNV--IRDRNTDKRLALKRP 208
            RG H  V D+ A  L    R  +L +V+   I D    ++L L + 
Sbjct: 168 -RGYHIRVLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNKR 213


>1G71-A nrPDB
          Length = 347

 Score =  219 bits (558), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 11/170 (6%)

Query: 42  MINREFAMAFRS-GAYKRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSE 100
           + +REF       G   R N ++ ++D +  I   +P        + + PRE +    + 
Sbjct: 32  LESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREMEGWRGA- 90

Query: 101 LKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWV 160
                 ELVFDID  D    R       VC  C +      K T   LRE+ G+++   V
Sbjct: 91  ------ELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVV 144

Query: 161 FSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVIRDRNTD--KRLALKRP 208
           +SG RG H  + D+ A  L    R  +L +++     N +  +R  L++ 
Sbjct: 145 YSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKR 193


>5OFN-A nrPDB
          Length = 330

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 31/195 (15%)

Query: 25  FKHIFNWLNHSPKPSRDMINREFAMA-FRSGAYKRYNSFNSVQDFKAQIEKAN-PDRFEI 82
           F++ +  LN   +  +DM  REFA+  F S  Y R+ SF+S ++ +  +   N P     
Sbjct: 18  FRNYY--LNAELELPKDMELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFY 75

Query: 83  GAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRT-----CCSGAQVCSKCWKFI 137
            +   + P  R+   K+ +     +L+FDID D     R+      C  A V  KC +  
Sbjct: 76  SSARYQLPSARNMEEKAWM---GSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDN 132

Query: 138 SLAM-----------------KITNTALREDFGYKDFIWVFSGRRGAHCWV-SDKRARAL 179
              +                 +     L +DFG K  ++ FSG RG H  V        L
Sbjct: 133 VETLEYVEMTSECIKRGLEQTRNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGNCALL 191

Query: 180 TDVQRRNVLDYVNVI 194
              +R+ + +YV  I
Sbjct: 192 DSDERKEIAEYVMGI 206


>3UP5-A nrPDB
          Length = 545

 Score = 33.9 bits (76), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 166 GAHCWVSDKRARALTDVQRRNVLDYVNV-----IRDRNTDKRLALKRPYHPHLARSLEQL 220
           G   W+S  R   L     + + D+V       ++D    ++L  K   HP  A+ +   
Sbjct: 284 GYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKD--HPFGAKRVPME 341

Query: 221 KPFFVSIMLEEQNPWEDDQHAIQTLLPA 248
             ++ +   +  +  +  +  IQ + P 
Sbjct: 342 TNYYETYNRDNVHLVDIREAPIQEVTPE 369


>1EU8-A nrPDB
          Length = 409

 Score = 32.8 bits (73), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 28/144 (19%)

Query: 171 VSDKRARALTDVQRRNVLDYVNVIRDRNTDKRLALK--------------RPYHPHLARS 216
           V+ +  R  TD ++R  LD VN +R +++D  + L                P   ++ + 
Sbjct: 34  VTVELKRQATDTEQRR-LDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLEPLDDYVQKD 92

Query: 217 LEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQLI----DSLKKYWLDNPRRSSKE 272
              L  FF S++        D Q      LP   D  L+    D L+KY    P     E
Sbjct: 93  NYDLSVFFQSVI-----NLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPP----E 143

Query: 273 KWNDIDQIATSLFKGPKQDSHIIK 296
            W ++ ++A  +  G ++ +    
Sbjct: 144 TWQELVEMAQKIQSGERETNPNFW 167


>4B4Y-A nrPDB
          Length = 154

 Score = 32.4 bits (72), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 229 LEEQNPWEDDQHAI----QTLLPALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSL 284
           LE     E+ Q  I    Q LLP  YD  + D L+++  +NP       W D  + A  +
Sbjct: 4   LEAMQVSEEQQSLIMEDVQVLLPN-YDDFVEDVLQQFMEENPETFQIFPWADASKTAKEM 62

Query: 285 FKGPKQDSH 293
              P+  SH
Sbjct: 63  RSHPRFKSH 71


>2BQX-A nrPDB
          Length = 173

 Score = 32.0 bits (71), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 18/93 (19%)

Query: 171 VSDKRARALTDVQRRNVLDYVNVIRDRNTDKRLALK-----RPYHPHLA-------RSLE 218
           V    A     V +  ++  +N+  +   D++L         P H ++         +L+
Sbjct: 72  VLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLD 131

Query: 219 QLKPFFVSIMLEEQNPW------EDDQHAIQTL 245
           ++K FF +    E N W      E+ + AI+ L
Sbjct: 132 KIKHFFETYKDLEPNKWVKVKGFENKESAIKVL 164


>3AIC-A nrPDB
          Length = 844

 Score = 31.6 bits (70), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 296 KLRECKEDL--VLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPK 353
             +  ++D   +LMT +P  D E  +Q ++ + A   IH        P+  + A +    
Sbjct: 41  WTQSTEKDFRPLLMTWWP--DQETQRQYVNYMNAQLGIHQTYNTATSPLQLNLAAQTIQT 98

Query: 354 LIDLQTEMEKNNDVSLTALQPFINQFQAYVSSLLK 388
            I+ +   EKN +     +  F+    A+ S   K
Sbjct: 99  KIEEKITAEKNTNWLRQTISAFVKTQSAWNSDSEK 133


>4V7F-o nrPDB
          Length = 647

 Score = 29.7 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 181 DVQRRNVLDYVNVIRDRNT-DKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQ 239
           D +R  +L+ V  +           L+        ++ E+L    +   L+ Q+   +  
Sbjct: 299 DEERAQLLESVKEVPGVEIMTSSCQLEENVMEVRNKACEKLLASRIENKLKSQSRINNVL 358

Query: 240 HAIQTLLPALYDK--------QLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQD 291
           + I    P   D         + + +LKKY  ++P R    +  + +     +F    +D
Sbjct: 359 NKIHVAQPQARDDVKRTPFIPESVKNLKKYDPEDPNRRKLARDIEAENGGAGVFNVNLKD 418

Query: 292 SHIIKLRECKEDLV 305
            ++++  E K D++
Sbjct: 419 KYLLEDDEWKNDIM 432


>1MLI-A nrPDB
          Length = 96

 Score = 28.9 bits (63), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 241 AIQTLLPALYDKQLIDSLKKYWLDNPRRSSKE-KWNDIDQIATSLFKGPKQDSHIIKLRE 299
            +   LP   D      LK    +  +R  +E  W  + +IA         D  +  +  
Sbjct: 6   KMTVKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRIAGHYANYSVFD--VPSVEA 63

Query: 300 CKEDLVLMTLYPKLDVEVTKQTIHLLKAPFCIH 332
             + L+ + L+P +D+EV      L + P  IH
Sbjct: 64  LHDTLMQLPLFPYMDIEVDG----LCRHPSSIH 92


>3IB3-A nrPDB
          Length = 560

 Score = 28.9 bits (63), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 212 HLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQLIDS 257
           +   +LE+ K FF   + EE N W+D  H I  +    Y  +   +
Sbjct: 304 YARENLERQKSFFDFYLKEENNDWKDTPHVIYEVRDQFYKGEFKSA 349


>6CMW-A nrPDB
          Length = 394

 Score = 28.2 bits (61), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 281 ATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLDVEVTKQTIHLLK---APFCIHPATGN 337
           + SLF     D  IIK  + KE   L TL P   + + +    LL      +C+     N
Sbjct: 111 SGSLFYVSSDDEFIIKTVQHKEAEFLQTLLPGYFMNLNQNMRTLLPKFYGLYCVQADGKN 170

Query: 338 VCVPIDESFAPEKAP 352
           + + +  +  P   P
Sbjct: 171 IRIVVMNNLLPRAVP 185


>2P4F-A nrPDB
          Length = 299

 Score = 27.8 bits (60), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 353 KLIDLQTEMEKNNDVSLTALQPFINQFQAYVSSLLKNELGSVKRERED 400
           ++  L      N D SL A+ P++  FQ      +KN L  +   RE+
Sbjct: 118 EVEFLWRAKWSNRDDSLVAVVPYVKTFQGMYKYAVKNPLFVLPLPREN 165


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.129    0.359 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,508,666
Number of Sequences: 36641
Number of extensions: 599306
Number of successful extensions: 1760
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1724
Number of HSP's gapped (non-prelim): 43
length of query: 409
length of database: 10,336,785
effective HSP length: 99
effective length of query: 310
effective length of database: 6,709,326
effective search space: 2079891060
effective search space used: 2079891060
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 60 (27.8 bits)