BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P10363 (409 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4LIM-A nrPDB 813 0.0 4LIK-A nrPDB 256 1e-68 1V33-A nrPDB 52 6e-07 1G71-A nrPDB 50 2e-06 6N2O-A nrPDB 32 0.47 4V6W-Az nrPDB 30 1.8 3AB1-A nrPDB 30 2.1 5BZV-A nrPDB 30 2.5 3AIC-A nrPDB 30 2.5 2QE0-A nrPDB 29 3.2 3DZ8-A nrPDB 28 5.9 2JO6-A nrPDB 28 7.1 3RAB-A nrPDB 28 8.4 6H3W-A nrPDB 28 9.6 >4LIM-A nrPDB Length = 391 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/390 (99%), Positives = 389/390 (99%) Query: 7 TNGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ 66 NGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ Sbjct: 2 ANGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ 61 Query: 67 DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG 126 DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG Sbjct: 62 DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG 121 Query: 127 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN 186 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN Sbjct: 122 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN 181 Query: 187 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL 246 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL Sbjct: 182 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL 241 Query: 247 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL 306 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL Sbjct: 242 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL 301 Query: 307 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND 366 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND Sbjct: 302 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND 361 Query: 367 VSLTALQPFINQFQAYVSSLLKNELGSVKR 396 VSLTALQPFINQFQAYVSSLLKNELGSVKR Sbjct: 362 VSLTALQPFINQFQAYVSSLLKNELGSVKR 391 >4LIK-A nrPDB Length = 392 Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/385 (33%), Positives = 219/385 (56%), Gaps = 16/385 (4%) Query: 15 MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74 ++ YY+ L+P+ + WLN+ +REF+ + Y RY SFN+ D + +++K Sbjct: 17 LKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQK 76 Query: 75 ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134 NP + +IGA+Y+ P + +T+ +A EKELVFDIDM DYD R CCS A +C KCW Sbjct: 77 MNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCW 136 Query: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194 +++A++I + AL+EDFG+K +WV+SGRRG HCWV D+ R L+ R +++Y++++ Sbjct: 137 TLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLV 196 Query: 195 R-DRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQH--AIQTLLPALYD 251 + ++ K++ L HP + +S+ +K +F L Q+ E+ + I L+P Sbjct: 197 KGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIH 256 Query: 252 KQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYP 311 +L S +K +S ++W + ++A+ K D + L + +++L +P Sbjct: 257 DELQQSFQK------SHNSLQRWEHLKKVASRYQNNIKNDKYGPWL---EWEIMLQYCFP 307 Query: 312 KLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----ESFAPEKAPKLIDLQTEMEKNNDV 367 +LD+ V+K HLLK+PF +HP TG + VPID + F P P + + E++ D Sbjct: 308 RLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDATRDY 367 Query: 368 SLTALQPFINQFQAYVSSLLKNELG 392 T+L P++ F+ ++ +L K+ G Sbjct: 368 KKTSLAPYVKVFEHFLENLDKSRKG 392 >1V33-A nrPDB Length = 366 Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 15/168 (8%) Query: 45 REFAMAFRS-GAYKRYNSFNSVQDFKAQIEKANP-DRFEIGAIYNKPPRERDTLLKSELK 102 REF G R N + ++D + I P + A+Y KP E++ Sbjct: 55 REFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAPYAVYSSVALYEKP---------QEME 105 Query: 103 A-LEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVF 161 L ELVFDID D R VC C ++ T LRE+ G+ D ++ Sbjct: 106 GWLGTELVFDIDAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIY 165 Query: 162 SGRRGAHCWVSDKRARALTDVQRRNVLDYVNV--IRDRNTDKRLALKR 207 SG RG H V D+ A L R +L +V+ I D ++L L + Sbjct: 166 SG-RGYHIRVLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNK 212 >1G71-A nrPDB Length = 347 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 9/159 (5%) Query: 44 NREFAMAFRS-GAYKRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELK 102 +REF G R N ++ ++D + I +P + + PRE + +EL Sbjct: 34 SREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREMEGWRGAEL- 92 Query: 103 ALEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFS 162 VFDID D R VC C + K T LRE+ G+++ V+S Sbjct: 93 ------VFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYS 146 Query: 163 GRRGAHCWVSDKRARALTDVQRRNVLDYVNVIRDRNTDK 201 G RG H + D+ A L R +L +++ N ++ Sbjct: 147 G-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEE 184 >6N2O-A nrPDB Length = 573 Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 16/109 (14%) Query: 26 KHIFNWLNH--SPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIE-KANPDRFEI 82 KHI L H + P+ N E KR+N NSV DF +E + ++ Sbjct: 420 KHIATGLEHGETGAPNYSPANHELMH------RKRFNKQNSVLDFYKNMEVEGVEGEADV 473 Query: 83 GAI-------YNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCC 124 G I + +R T ++KA+ +L++ + + DYDAF C Sbjct: 474 GIITWGSTIGVVREAMQRLTAEGLKVKAMYPKLLWPMPVADYDAFGATC 522 >4V6W-Az nrPDB Length = 844 Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 28/71 (39%) Query: 284 LFKGPKQDSHIIKLRECKEDLVLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPID 343 L++GP D I ++ C D LM K+ K + F ATG C + Sbjct: 358 LYEGPHDDEAAIAVKSCDPDGPLMMYISKMVPTSDKGRFYAFGRVFAGKVATGQKCRIMG 417 Query: 344 ESFAPEKAPKL 354 ++ P K L Sbjct: 418 PNYTPGKKEDL 428 >3AB1-A nrPDB Length = 360 Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 21 SLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEKANPDRF 80 +LYP KHI++ P+ D++ +A A +RYN + + + K + F Sbjct: 55 ALYPEKHIYDVAGFPEVPAIDLVESLWAQA------ERYNPDVVLNETVTKYTKLDDGTF 108 Query: 81 EIGAIYNKPPRERDTLLKSELKALE 105 E R R L+ + L A E Sbjct: 109 ETRTNTGNVYRSRAVLIAAGLGAFE 133 >5BZV-A nrPDB Length = 400 Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 27/122 (22%) Query: 188 LDYVNVIRDRNTDKRLA--LKRPYHPHLARSL--EQLKPFFVSIMLEEQNPW-------- 235 LDY+ + D+ + L L+ P ++ R L EQ+KPFF+ ++L+ + Sbjct: 13 LDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDY 72 Query: 236 ---EDDQHAIQTLLPALYD-----------KQLIDSL-KKYWLDNPRRSSKEKWNDIDQI 280 E IQT+ P ++ +++ID++ + +D + +++ I+Q+ Sbjct: 73 LTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQV 132 Query: 281 AT 282 T Sbjct: 133 VT 134 >3AIC-A nrPDB Length = 844 Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 305 VLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKN 364 +LMT +P D E +Q ++ + A IH P+ + A + I+ + EKN Sbjct: 52 LLMTWWP--DQETQRQYVNYMNAQLGIHQTYNTATSPLQLNLAAQTIQTKIEEKITAEKN 109 Query: 365 NDVSLTALQPFINQFQAYVS 384 + + F+ A+ S Sbjct: 110 TNWLRQTISAFVKTQSAWNS 129 >2QE0-A nrPDB Length = 475 Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 172 SDKRARALTDVQRRNVLDYVNVIRDRNTDKRLALKRPYHPHL 213 +DK A ALT+++R L + TD RLA + P+ P L Sbjct: 342 NDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVL 383 >3DZ8-A nrPDB Length = 191 Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 61 SFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSE-LKALEKELVFDI 112 SFN+VQD+ QI+ + D ++ + NK E + ++ +E + L ++L FD Sbjct: 110 SFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDF 162 >2JO6-A nrPDB Length = 113 Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 19/30 (63%) Query: 200 DKRLALKRPYHPHLARSLEQLKPFFVSIML 229 D+++A+ RPYH ++ + PFF S +L Sbjct: 28 DEQVAIFRPYHSDQVFAISNIDPFFESSVL 57 >3RAB-A nrPDB Length = 169 Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 24/40 (60%) Query: 61 SFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSE 100 SFN+VQD+ QI+ + D ++ + NK E + ++ SE Sbjct: 92 SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 131 >6H3W-A nrPDB Length = 250 Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 329 FCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNNDVSLTAL-QPFINQFQAYVSSLL 387 FC G C + FA E QT+ +K+ +++LTAL F AY++++L Sbjct: 130 FCRCVKNGEKCSSSNWDFANEMKDYYSGKQTKFDKDLNLALTALHHAFRGTSSAYIATML 189 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4LIM-A nrPDB 663 0.0 4LIK-A nrPDB 560 e-160 1V33-A nrPDB 220 7e-58 1G71-A nrPDB 219 1e-57 Sequences not found previously or not previously below threshold: 5OFN-A nrPDB 67 1e-11 3UP5-A nrPDB 34 0.12 1EU8-A nrPDB 33 0.27 4B4Y-A nrPDB 32 0.34 2BQX-A nrPDB 32 0.48 3AIC-A nrPDB 32 0.69 4V7F-o nrPDB 30 2.7 1MLI-A nrPDB 29 3.9 3IB3-A nrPDB 29 4.5 6CMW-A nrPDB 28 6.3 2P4F-A nrPDB 28 8.2 >4LIM-A nrPDB Length = 391 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 389/390 (99%), Positives = 389/390 (99%) Query: 7 TNGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ 66 NGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ Sbjct: 2 ANGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQ 61 Query: 67 DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG 126 DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG Sbjct: 62 DFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSG 121 Query: 127 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN 186 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN Sbjct: 122 AQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRN 181 Query: 187 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL 246 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL Sbjct: 182 VLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLL 241 Query: 247 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL 306 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL Sbjct: 242 PALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVL 301 Query: 307 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND 366 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND Sbjct: 302 MTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNND 361 Query: 367 VSLTALQPFINQFQAYVSSLLKNELGSVKR 396 VSLTALQPFINQFQAYVSSLLKNELGSVKR Sbjct: 362 VSLTALQPFINQFQAYVSSLLKNELGSVKR 391 >4LIK-A nrPDB Length = 392 Score = 560 bits (1442), Expect = e-160, Method: Composition-based stats. Identities = 128/385 (33%), Positives = 219/385 (56%), Gaps = 16/385 (4%) Query: 15 MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74 ++ YY+ L+P+ + WLN+ +REF+ + Y RY SFN+ D + +++K Sbjct: 17 LKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQK 76 Query: 75 ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134 NP + +IGA+Y+ P + +T+ +A EKELVFDIDM DYD R CCS A +C KCW Sbjct: 77 MNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCW 136 Query: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194 +++A++I + AL+EDFG+K +WV+SGRRG HCWV D+ R L+ R +++Y++++ Sbjct: 137 TLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLV 196 Query: 195 R-DRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQH--AIQTLLPALYD 251 + ++ K++ L HP + +S+ +K +F L Q+ E+ + I L+P Sbjct: 197 KGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIH 256 Query: 252 KQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYP 311 +L S +K +S ++W + ++A+ K D + L + +++L +P Sbjct: 257 DELQQSFQK------SHNSLQRWEHLKKVASRYQNNIKNDKYGPWL---EWEIMLQYCFP 307 Query: 312 KLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----ESFAPEKAPKLIDLQTEMEKNNDV 367 +LD+ V+K HLLK+PF +HP TG + VPID + F P P + + E++ D Sbjct: 308 RLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDATRDY 367 Query: 368 SLTALQPFINQFQAYVSSLLKNELG 392 T+L P++ F+ ++ +L K+ G Sbjct: 368 KKTSLAPYVKVFEHFLENLDKSRKG 392 >1V33-A nrPDB Length = 366 Score = 220 bits (561), Expect = 7e-58, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 11/167 (6%) Query: 45 REFAMAFRS-GAYKRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKA 103 REF G R N + ++D + I P + P+E + Sbjct: 55 REFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAPYAVYSSVALYEKPQEMEGW------- 107 Query: 104 LEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSG 163 L ELVFDID D R VC C ++ T LRE+ G+ D ++SG Sbjct: 108 LGTELVFDIDAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSG 167 Query: 164 RRGAHCWVSDKRARALTDVQRRNVLDYVNV--IRDRNTDKRLALKRP 208 RG H V D+ A L R +L +V+ I D ++L L + Sbjct: 168 -RGYHIRVLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNKR 213 >1G71-A nrPDB Length = 347 Score = 219 bits (558), Expect = 1e-57, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 11/170 (6%) Query: 42 MINREFAMAFRS-GAYKRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSE 100 + +REF G R N ++ ++D + I +P + + PRE + + Sbjct: 32 LESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREMEGWRGA- 90 Query: 101 LKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWV 160 ELVFDID D R VC C + K T LRE+ G+++ V Sbjct: 91 ------ELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVV 144 Query: 161 FSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVIRDRNTD--KRLALKRP 208 +SG RG H + D+ A L R +L +++ N + +R L++ Sbjct: 145 YSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKR 193 >5OFN-A nrPDB Length = 330 Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 31/195 (15%) Query: 25 FKHIFNWLNHSPKPSRDMINREFAMA-FRSGAYKRYNSFNSVQDFKAQIEKAN-PDRFEI 82 F++ + LN + +DM REFA+ F S Y R+ SF+S ++ + + N P Sbjct: 18 FRNYY--LNAELELPKDMELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFY 75 Query: 83 GAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRT-----CCSGAQVCSKCWKFI 137 + + P R+ K+ + +L+FDID D R+ C A V KC + Sbjct: 76 SSARYQLPSARNMEEKAWM---GSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDN 132 Query: 138 SLAM-----------------KITNTALREDFGYKDFIWVFSGRRGAHCWV-SDKRARAL 179 + + L +DFG K ++ FSG RG H V L Sbjct: 133 VETLEYVEMTSECIKRGLEQTRNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGNCALL 191 Query: 180 TDVQRRNVLDYVNVI 194 +R+ + +YV I Sbjct: 192 DSDERKEIAEYVMGI 206 >3UP5-A nrPDB Length = 545 Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 7/88 (7%) Query: 166 GAHCWVSDKRARALTDVQRRNVLDYVNV-----IRDRNTDKRLALKRPYHPHLARSLEQL 220 G W+S R L + + D+V ++D ++L K HP A+ + Sbjct: 284 GYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKD--HPFGAKRVPME 341 Query: 221 KPFFVSIMLEEQNPWEDDQHAIQTLLPA 248 ++ + + + + + IQ + P Sbjct: 342 TNYYETYNRDNVHLVDIREAPIQEVTPE 369 >1EU8-A nrPDB Length = 409 Score = 32.8 bits (73), Expect = 0.27, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 28/144 (19%) Query: 171 VSDKRARALTDVQRRNVLDYVNVIRDRNTDKRLALK--------------RPYHPHLARS 216 V+ + R TD ++R LD VN +R +++D + L P ++ + Sbjct: 34 VTVELKRQATDTEQRR-LDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLEPLDDYVQKD 92 Query: 217 LEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQLI----DSLKKYWLDNPRRSSKE 272 L FF S++ D Q LP D L+ D L+KY P E Sbjct: 93 NYDLSVFFQSVI-----NLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPP----E 143 Query: 273 KWNDIDQIATSLFKGPKQDSHIIK 296 W ++ ++A + G ++ + Sbjct: 144 TWQELVEMAQKIQSGERETNPNFW 167 >4B4Y-A nrPDB Length = 154 Score = 32.4 bits (72), Expect = 0.34, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 229 LEEQNPWEDDQHAI----QTLLPALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSL 284 LE E+ Q I Q LLP YD + D L+++ +NP W D + A + Sbjct: 4 LEAMQVSEEQQSLIMEDVQVLLPN-YDDFVEDVLQQFMEENPETFQIFPWADASKTAKEM 62 Query: 285 FKGPKQDSH 293 P+ SH Sbjct: 63 RSHPRFKSH 71 >2BQX-A nrPDB Length = 173 Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 18/93 (19%) Query: 171 VSDKRARALTDVQRRNVLDYVNVIRDRNTDKRLALK-----RPYHPHLA-------RSLE 218 V A V + ++ +N+ + D++L P H ++ +L+ Sbjct: 72 VLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLD 131 Query: 219 QLKPFFVSIMLEEQNPW------EDDQHAIQTL 245 ++K FF + E N W E+ + AI+ L Sbjct: 132 KIKHFFETYKDLEPNKWVKVKGFENKESAIKVL 164 >3AIC-A nrPDB Length = 844 Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 296 KLRECKEDL--VLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPK 353 + ++D +LMT +P D E +Q ++ + A IH P+ + A + Sbjct: 41 WTQSTEKDFRPLLMTWWP--DQETQRQYVNYMNAQLGIHQTYNTATSPLQLNLAAQTIQT 98 Query: 354 LIDLQTEMEKNNDVSLTALQPFINQFQAYVSSLLK 388 I+ + EKN + + F+ A+ S K Sbjct: 99 KIEEKITAEKNTNWLRQTISAFVKTQSAWNSDSEK 133 >4V7F-o nrPDB Length = 647 Score = 29.7 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 181 DVQRRNVLDYVNVIRDRNT-DKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQ 239 D +R +L+ V + L+ ++ E+L + L+ Q+ + Sbjct: 299 DEERAQLLESVKEVPGVEIMTSSCQLEENVMEVRNKACEKLLASRIENKLKSQSRINNVL 358 Query: 240 HAIQTLLPALYDK--------QLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQD 291 + I P D + + +LKKY ++P R + + + +F +D Sbjct: 359 NKIHVAQPQARDDVKRTPFIPESVKNLKKYDPEDPNRRKLARDIEAENGGAGVFNVNLKD 418 Query: 292 SHIIKLRECKEDLV 305 ++++ E K D++ Sbjct: 419 KYLLEDDEWKNDIM 432 >1MLI-A nrPDB Length = 96 Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 7/93 (7%) Query: 241 AIQTLLPALYDKQLIDSLKKYWLDNPRRSSKE-KWNDIDQIATSLFKGPKQDSHIIKLRE 299 + LP D LK + +R +E W + +IA D + + Sbjct: 6 KMTVKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRIAGHYANYSVFD--VPSVEA 63 Query: 300 CKEDLVLMTLYPKLDVEVTKQTIHLLKAPFCIH 332 + L+ + L+P +D+EV L + P IH Sbjct: 64 LHDTLMQLPLFPYMDIEVDG----LCRHPSSIH 92 >3IB3-A nrPDB Length = 560 Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 212 HLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQLIDS 257 + +LE+ K FF + EE N W+D H I + Y + + Sbjct: 304 YARENLERQKSFFDFYLKEENNDWKDTPHVIYEVRDQFYKGEFKSA 349 >6CMW-A nrPDB Length = 394 Score = 28.2 bits (61), Expect = 6.3, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Query: 281 ATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLDVEVTKQTIHLLK---APFCIHPATGN 337 + SLF D IIK + KE L TL P + + + LL +C+ N Sbjct: 111 SGSLFYVSSDDEFIIKTVQHKEAEFLQTLLPGYFMNLNQNMRTLLPKFYGLYCVQADGKN 170 Query: 338 VCVPIDESFAPEKAP 352 + + + + P P Sbjct: 171 IRIVVMNNLLPRAVP 185 >2P4F-A nrPDB Length = 299 Score = 27.8 bits (60), Expect = 8.2, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 22/48 (45%) Query: 353 KLIDLQTEMEKNNDVSLTALQPFINQFQAYVSSLLKNELGSVKRERED 400 ++ L N D SL A+ P++ FQ +KN L + RE+ Sbjct: 118 EVEFLWRAKWSNRDDSLVAVVPYVKTFQGMYKYAVKNPLFVLPLPREN 165 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.129 0.359 Lambda K H 0.267 0.0399 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,508,666 Number of Sequences: 36641 Number of extensions: 599306 Number of successful extensions: 1760 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 1724 Number of HSP's gapped (non-prelim): 43 length of query: 409 length of database: 10,336,785 effective HSP length: 99 effective length of query: 310 effective length of database: 6,709,326 effective search space: 2079891060 effective search space used: 2079891060 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 60 (27.8 bits)