BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P0AGG2
(286 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1C8U-A nrPDB 588 e-169
4QFW-A nrPDB 458 e-129
3U0A-A nrPDB 171 4e-43
3RD7-A nrPDB 164 5e-41
4R9Z-A nrPDB 136 1e-32
1TBU-A nrPDB 65 5e-11
2C54-A nrPDB 32 0.25
1X6R-A nrPDB 32 0.29
5VXY-A nrPDB 31 0.48
5NP9-A nrPDB 31 0.73
6GCS-B nrPDB 29 2.4
3R77-A nrPDB 28 3.5
2UYA-A nrPDB 27 6.8
5TE0-A nrPDB 27 7.6
4MWI-A nrPDB 27 7.7
1BD3-D nrPDB 27 9.8
>1C8U-A nrPDB
Length = 285
Score = 588 bits (1516), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 2 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH 61
SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH
Sbjct: 1 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH 60
Query: 62 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM 121
SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM
Sbjct: 61 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM 120
Query: 122 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 181
PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW
Sbjct: 121 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 180
Query: 182 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 241
IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL
Sbjct: 181 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 240
Query: 242 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN 286
NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN
Sbjct: 241 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN 285
>4QFW-A nrPDB
Length = 288
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/285 (78%), Positives = 254/285 (89%)
Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60
MSQAL+ LL LL+LEKIEEG+FRGQSEDLGLRQVFGGQVVGQA+YAAK+TVP ER VHSF
Sbjct: 1 MSQALEKLLDLLDLEKIEEGIFRGQSEDLGLRQVFGGQVVGQAIYAAKQTVPAERTVHSF 60
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120
HSYFLRPGDS KPIIYDVETLRDGNSFSARRV+AIQNGKPIFYMTASFQ+ E GFEHQ T
Sbjct: 61 HSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNT 120
Query: 121 MPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQV 180
MP P P+GL SET IA+ +HL+P +++KFI +P+E+RPV+FHNPL+G V EP+R V
Sbjct: 121 MPDVPPPEGLMSETDIARQFSHLIPEKVREKFIGPQPIEMRPVKFHNPLQGSVEEPNRYV 180
Query: 181 WIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFN 240
W RANG +PDDLRVHQYLLGYASD NFLP ALQPHGIGFLEPG+QIATIDHSMWFHRPF
Sbjct: 181 WFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFR 240
Query: 241 LNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNH 285
L++WLLY+VESTSAS ARGFVRG+ Y ++GVLVASTVQEGV+R H
Sbjct: 241 LDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH 285
>3U0A-A nrPDB
Length = 285
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 155/279 (55%), Gaps = 19/279 (6%)
Query: 11 LLNLEKIEEGLFRGQS---EDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFHSYFLRP 67
+L+LE++E ++RG E L++ FGG V GQ+L +A TV VHS H YFLR
Sbjct: 10 ILDLEQLEVNIYRGSVFSPESGFLQRTFGGHVAGQSLVSAVRTVDPRYQVHSLHGYFLRS 69
Query: 68 GDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSAPAP 127
GD+++P ++ VE RDG SF RRV A+Q+G+ IF M ASFQ + G HQ MP+AP P
Sbjct: 70 GDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAAPPP 129
Query: 128 DGLPSETQIAQSLAHLLPPVLKD---KFICDRPLEVRPVEFHNPLKGHVAEPHRQVWIRA 184
D LP + V D + + + + P + PL G ++ +QVW R
Sbjct: 130 DDLPGLRSVR---------VFDDAGFRQFEEWDVRIVPRDLLAPLPGKASQ--QQVWFRH 178
Query: 185 NGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEW 244
+PDD +H L Y SDL L A H + E +Q+A++DH+MWF R F +EW
Sbjct: 179 RDPLPDDPVLHICALAYMSDLTLLGSAQVTH-LAEREH-LQVASLDHAMWFMRGFRADEW 236
Query: 245 LLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMR 283
LLY S SA R G+ +TQ G LVA+ +QEG+ R
Sbjct: 237 LLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTR 275
>3RD7-A nrPDB
Length = 286
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 145/286 (50%), Gaps = 15/286 (5%)
Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60
M L+++L+LL+L++I++ F G D + G QV QAL AA T P RL HS
Sbjct: 3 MISTLEDVLSLLDLQQIDDAAFVGTQPDTPNHHIIGSQVAAQALMAAGRTTPG-RLAHSM 61
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120
H YFLR GD+++PI YDV LRDG + S+RRV A Q+G +F ASF + Q+
Sbjct: 62 HMYFLRRGDARQPIQYDVTPLRDGGTISSRRVTASQSGVVLFEALASFTIIADDVDWQQR 121
Query: 121 MPSAPAPDGLPSETQIAQSLAHLLPPVLK---DKFICDRPLEVRPVEFHNPLKGHVAE-- 175
MP P + L LL P + D + RP +R ++ + +++
Sbjct: 122 MPDVAGPSAV-------HGLEDLLAPYAEEFGDWWPQQRPFTMRYLDAPPRVALDLSDPP 174
Query: 176 -PHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMW 234
P ++W+RANG V DD V+ ++ Y S L L + + P + A +DH++W
Sbjct: 175 PPRLRIWLRANGEVTDDPLVNSCVVAYLSALTLLECVMTTMRTTPVGPRLS-ALVDHTIW 233
Query: 235 FHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEG 280
FHR + +WLL+ S S RG G Y + G LV QEG
Sbjct: 234 FHRAADFTDWLLFDQFSPSIVGRRGLATGTLYNRSGELVCIATQEG 279
>4R9Z-A nrPDB
Length = 278
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 20/283 (7%)
Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60
MS +L ++L L LE++ + F GQ + GG + QAL AA T R HS
Sbjct: 4 MSSSLGDVLATLELERVGQWRFVGQQLPAPANHILGGHISAQALLAASRTA-AGREPHSV 62
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQ---APEAGFEH 117
H+YFLRPGDS++P+ ++V L++G +FSARRV A Q+ K + +SF+ + A +
Sbjct: 63 HTYFLRPGDSRQPVDFEVVDLQEGRTFSARRVTARQDDKILMEAMSSFKVVNSAAAQVVY 122
Query: 118 QKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPH 177
Q MP AP+P+ LP +A LA + ++ R E R +E V
Sbjct: 123 QPIMPEAPSPESLP---WVAPHLAE-ADEGSRGRWASLRWFERRTIETETVPPARVP--- 175
Query: 178 RQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQI-ATIDHSMWFH 236
+W R +G VPDD + L+ Y S + A G G+ A DHS+WFH
Sbjct: 176 --MWWRPDGRVPDDPVLTASLVAYMSAVTLTEPAFAARG------GVGASAQRDHSVWFH 227
Query: 237 RPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQE 279
L++WL Y S S++ + G + + G LV + QE
Sbjct: 228 GRAVLSDWLFYDRSSPSSAGSLALASGTMFNRTGELVCTVKQE 270
>1TBU-A nrPDB
Length = 118
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 4 ALKNLLTLLNLEKIEEGLFRGQ---SEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60
A+ NL +L L + F + + +G + FGG +V Q+L A+ TVP S
Sbjct: 7 AMSNLEKILELVPLSPTSFVTKYLPAAPVGSKGTFGGTLVSQSLLASLHTVPLNFFPTSL 66
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF 102
HSYF++ GD + I Y V+ LR+G +F ++V+A Q+ K IF
Sbjct: 67 HSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIF 108
>2C54-A nrPDB
Length = 379
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 86 SFSARRVAAIQNGKPIFYMTASFQAPEAGFEH-QKTMPSAPAPDGLPSETQIAQSLAHLL 144
SF+ A I K FY +++ PE F+ + T S D P+E Q A L L
Sbjct: 125 SFNMIEAARINGIKRFFYASSACIYPE--FKQLETTNVSLKESDAWPAEPQDAYGLERLA 182
Query: 145 PPVLKDKFICDRPLEVRPVEFHN 167
L + D +E R FHN
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHN 205
>1X6R-A nrPDB
Length = 123
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 167 NPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFL-PVALQPH 215
NPLK V E + W +G+ +D + LG A+D N L +AL+P
Sbjct: 20 NPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPD 69
>5VXY-A nrPDB
Length = 144
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 167 NPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFL-PVALQPH 215
NPLK V E + W +G+ +D + LG A+D N L +AL+P
Sbjct: 41 NPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPD 90
>5NP9-A nrPDB
Length = 158
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 25 QSEDLGLRQVFGGQVVGQALYA--AKETVPEERLVHSFHSYFLRPGDSKKPIIY 76
+SEDLGL + F GQ V +A +E +P+ERL R GD ++ I +
Sbjct: 87 ESEDLGLDEYFHGQGVCLVEWAHLIEEQLPQERL----QIVIKRAGDDEREITF 136
>6GCS-B nrPDB
Length = 488
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 221 EPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVL 272
EPG D + P L E L + + +A++A ++RGEFY + VL
Sbjct: 123 EPG---TCKDREIMRKDPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAAVL 171
>3R77-A nrPDB
Length = 209
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 20/92 (21%)
Query: 56 LVHSFHSYFLRPGDSKKPIIYDVETLRD---GNSFSARRVAAIQNGKPIFYMTASFQAPE 112
LVH+ YFLRP + LRD GN+ R+ AA NG P+ Y P
Sbjct: 37 LVHAMQRYFLRPLP---------DALRDQVVGNAARIRQWAA-DNGVPVAYTA----QPG 82
Query: 113 AGFEHQKTMPS---APAPDGLPSETQIAQSLA 141
+ E Q+ + P P++ ++ +LA
Sbjct: 83 SMNEEQRGLLKDFWGPGMKASPTDREVVDALA 114
>2UYA-A nrPDB
Length = 383
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 204 DLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASS 256
DL + P L PH I LE G + + F F L +WL ++ + A++
Sbjct: 130 DLWYFPSGL-PHSIQALEEGAEFLLVFDDGSFSSTFQLTDWLAHTPKEVIAAN 181
>5TE0-A nrPDB
Length = 347
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 57 VHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARR----VAAIQNGKPIFYMTASFQAPE 112
+H Y L P K+P IY V SF + + +QN + +A E
Sbjct: 261 MHCLIRYMLEPDPDKRPDIYQVSYF----SFKLLKKECPIPNVQNSPIPAKLPEPVKASE 316
Query: 113 AGFEHQKTMPSAPAPDGLP-SETQIA 137
A +KT P A D +P +ET IA
Sbjct: 317 AA--AKKTQPKARLTDPIPTTETSIA 340
>4MWI-A nrPDB
Length = 294
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 102 FYMTASFQAPEAGFEHQKTMPSAPAPDGLPSE-TQIAQSLAHLLPPVLKDKF 152
F +T +Q AGFE +KT S G E T +S A+L P L+D F
Sbjct: 160 FLVTQGYQVKLAGFELRKTQTSMSL--GTTREKTDRVKSTAYLSPQELEDVF 209
>1BD3-D nrPDB
Length = 243
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 24 GQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVH 58
G+S + GLR V G +G+ L ET E +L++
Sbjct: 113 GESMESGLRAVCRGVRIGKILIQRDETTAEPKLIY 147
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1C8U-A nrPDB 454 e-128
4QFW-A nrPDB 431 e-121
3RD7-A nrPDB 370 e-103
4R9Z-A nrPDB 342 1e-94
3U0A-A nrPDB 335 1e-92
1TBU-A nrPDB 146 2e-35
Sequences not found previously or not previously below threshold:
1AD5-A nrPDB 36 0.016
3BBY-A nrPDB 32 0.39
3KZO-A nrPDB 31 0.77
2AWA-A nrPDB 30 1.1
3TQO-A nrPDB 30 1.4
4A6D-A nrPDB 29 1.9
3CZP-A nrPDB 28 5.3
4XWH-A nrPDB 27 6.6
CONVERGED!
>1C8U-A nrPDB
Length = 285
Score = 454 bits (1168), Expect = e-128, Method: Composition-based stats.
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 2 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH 61
SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH
Sbjct: 1 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH 60
Query: 62 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM 121
SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM
Sbjct: 61 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM 120
Query: 122 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 181
PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW
Sbjct: 121 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 180
Query: 182 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 241
IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL
Sbjct: 181 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 240
Query: 242 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN 286
NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN
Sbjct: 241 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN 285
>4QFW-A nrPDB
Length = 288
Score = 431 bits (1107), Expect = e-121, Method: Composition-based stats.
Identities = 225/285 (78%), Positives = 254/285 (89%)
Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60
MSQAL+ LL LL+LEKIEEG+FRGQSEDLGLRQVFGGQVVGQA+YAAK+TVP ER VHSF
Sbjct: 1 MSQALEKLLDLLDLEKIEEGIFRGQSEDLGLRQVFGGQVVGQAIYAAKQTVPAERTVHSF 60
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120
HSYFLRPGDS KPIIYDVETLRDGNSFSARRV+AIQNGKPIFYMTASFQ+ E GFEHQ T
Sbjct: 61 HSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNT 120
Query: 121 MPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQV 180
MP P P+GL SET IA+ +HL+P +++KFI +P+E+RPV+FHNPL+G V EP+R V
Sbjct: 121 MPDVPPPEGLMSETDIARQFSHLIPEKVREKFIGPQPIEMRPVKFHNPLQGSVEEPNRYV 180
Query: 181 WIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFN 240
W RANG +PDDLRVHQYLLGYASD NFLP ALQPHGIGFLEPG+QIATIDHSMWFHRPF
Sbjct: 181 WFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFR 240
Query: 241 LNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNH 285
L++WLLY+VESTSAS ARGFVRG+ Y ++GVLVASTVQEGV+R H
Sbjct: 241 LDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH 285
>3RD7-A nrPDB
Length = 286
Score = 370 bits (949), Expect = e-103, Method: Composition-based stats.
Identities = 100/286 (34%), Positives = 145/286 (50%), Gaps = 15/286 (5%)
Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60
M L+++L+LL+L++I++ F G D + G QV QAL AA T P RL HS
Sbjct: 3 MISTLEDVLSLLDLQQIDDAAFVGTQPDTPNHHIIGSQVAAQALMAAGRTTP-GRLAHSM 61
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120
H YFLR GD+++PI YDV LRDG + S+RRV A Q+G +F ASF + Q+
Sbjct: 62 HMYFLRRGDARQPIQYDVTPLRDGGTISSRRVTASQSGVVLFEALASFTIIADDVDWQQR 121
Query: 121 MPSAPAPDGLPSETQIAQSLAHLLPPVLK---DKFICDRPLEVRPVEFHNPLKGHVAE-- 175
MP P + L LL P + D + RP +R ++ + +++
Sbjct: 122 MPDVAGPSAV-------HGLEDLLAPYAEEFGDWWPQQRPFTMRYLDAPPRVALDLSDPP 174
Query: 176 -PHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMW 234
P ++W+RANG V DD V+ ++ Y S L L + + P + A +DH++W
Sbjct: 175 PPRLRIWLRANGEVTDDPLVNSCVVAYLSALTLLECVMTTMRTTPVGPRLS-ALVDHTIW 233
Query: 235 FHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEG 280
FHR + +WLL+ S S RG G Y + G LV QEG
Sbjct: 234 FHRAADFTDWLLFDQFSPSIVGRRGLATGTLYNRSGELVCIATQEG 279
>4R9Z-A nrPDB
Length = 278
Score = 342 bits (876), Expect = 1e-94, Method: Composition-based stats.
Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 20/283 (7%)
Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60
MS +L ++L L LE++ + F GQ + GG + QAL AA T R HS
Sbjct: 4 MSSSLGDVLATLELERVGQWRFVGQQLPAPANHILGGHISAQALLAASRTA-AGREPHSV 62
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQ---APEAGFEH 117
H+YFLRPGDS++P+ ++V L++G +FSARRV A Q+ K + +SF+ + A +
Sbjct: 63 HTYFLRPGDSRQPVDFEVVDLQEGRTFSARRVTARQDDKILMEAMSSFKVVNSAAAQVVY 122
Query: 118 QKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPH 177
Q MP AP+P+ LP +A LA + ++ R E R +E V
Sbjct: 123 QPIMPEAPSPESLP---WVAPHLAE-ADEGSRGRWASLRWFERRTIETETVPPARVP--- 175
Query: 178 RQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQI-ATIDHSMWFH 236
+W R +G VPDD + L+ Y S + A G G+ A DHS+WFH
Sbjct: 176 --MWWRPDGRVPDDPVLTASLVAYMSAVTLTEPAFAARG------GVGASAQRDHSVWFH 227
Query: 237 RPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQE 279
L++WL Y S S++ + G + + G LV + QE
Sbjct: 228 GRAVLSDWLFYDRSSPSSAGSLALASGTMFNRTGELVCTVKQE 270
>3U0A-A nrPDB
Length = 285
Score = 335 bits (859), Expect = 1e-92, Method: Composition-based stats.
Identities = 112/282 (39%), Positives = 156/282 (55%), Gaps = 19/282 (6%)
Query: 8 LLTLLNLEKIEEGLFRGQS---EDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFHSYF 64
+ +L+LE++E ++RG E L++ FGG V GQ+L +A TV VHS H YF
Sbjct: 7 IEEILDLEQLEVNIYRGSVFSPESGFLQRTFGGHVAGQSLVSAVRTVDPRYQVHSLHGYF 66
Query: 65 LRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSA 124
LR GD+++P ++ VE RDG SF RRV A+Q+G+ IF M ASFQ + G HQ MP+A
Sbjct: 67 LRSGDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAA 126
Query: 125 PAPDGLPSETQIAQSLAHLLPPVLKD---KFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 181
P PD LP + V D + + + + P + PL G ++ +QVW
Sbjct: 127 PPPDDLPGLRSVR---------VFDDAGFRQFEEWDVRIVPRDLLAPLPGKASQ--QQVW 175
Query: 182 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 241
R +PDD +H L Y SDL L A H + E +Q+A++DH+MWF R F
Sbjct: 176 FRHRDPLPDDPVLHICALAYMSDLTLLGSAQVTH-LAEREH-LQVASLDHAMWFMRGFRA 233
Query: 242 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMR 283
+EWLLY S SA R G+ +TQ G LVA+ +QEG+ R
Sbjct: 234 DEWLLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTR 275
>1TBU-A nrPDB
Length = 118
Score = 146 bits (367), Expect = 2e-35, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 4 ALKNLLTLLNLEKIEEGLFRGQ---SEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60
A+ NL +L L + F + + +G + FGG +V Q+L A+ TVP S
Sbjct: 7 AMSNLEKILELVPLSPTSFVTKYLPAAPVGSKGTFGGTLVSQSLLASLHTVPLNFFPTSL 66
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAP 111
HSYF++ GD + I Y V+ LR+G +F ++V+A Q+ K IF F
Sbjct: 67 HSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFAVQ 117
>1AD5-A nrPDB
Length = 438
Score = 36.3 bits (82), Expect = 0.016, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 23/152 (15%)
Query: 6 KNLLTLLNLEKIEEGLFRGQSEDLGLRQVFG-GQVVGQALYAAKETVPEERLVHSFHSYF 64
N + ++ + EE F+G S RQ+ G ++G + ET + S Y
Sbjct: 52 SNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSL-SVRDYD 110
Query: 65 LRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSA 124
R GD+ K Y + TL +G + + R ++F + +H K
Sbjct: 111 PRQGDTVK--HYKIRTLDNGGFYISPR--------------STFSTLQELVDHYKK---- 150
Query: 125 PAPDGLPSETQIAQSLAHLLPPVLKDKFICDR 156
DGL + + + P KD + R
Sbjct: 151 -GNDGLCQKLSVPCMSSKPQKPWEKDAWEIPR 181
>3BBY-A nrPDB
Length = 215
Score = 31.7 bits (70), Expect = 0.39, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 141 AHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVWIRAN 185
+ + L+D+F + P++ N + Q W+R++
Sbjct: 73 SSAIAEYLEDRFAPPTWERIYPLDLENRARAR----QIQAWLRSD 113
>3KZO-A nrPDB
Length = 359
Score = 30.5 bits (67), Expect = 0.77, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 4 ALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF--- 60
+LK+ L + + E Q+ L R G ++ G+++ A P R SF
Sbjct: 22 SLKHFLNTQDWSRAELDALLTQAA-LFKRNKLGSELKGKSI-ALVFFNPSMRTRTSFELG 79
Query: 61 ------HSYFLRPGDSKKPIIYDVETLRDGNS 86
H+ L+PG PI +++ T+ DG++
Sbjct: 80 AFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDT 111
>2AWA-A nrPDB
Length = 390
Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 65 LRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFY-----MTASFQAPEAGFEHQK 119
L P D I ++V LR + +A QNG ++A +PE G +++
Sbjct: 267 LIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDGVVSAHVHSPEVGKVNEE 326
Query: 120 TMPSAPAPDGLP---SETQIAQSLAHLLPPVLKDKFICD-RPLEVRPVEF 165
+ L + T + SL L + FI RP + P +
Sbjct: 327 IDTDQVTGEDLTISFNPTYLIDSLKALNSEKVTISFISAVRPFTLVPADT 376
>3TQO-A nrPDB
Length = 462
Score = 29.8 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120
++Y + GD + +DV +D S R + +Q G + ++ S + P +K
Sbjct: 136 YAYTGQNGD----VFFDVRRFKDYGKLSHRHLDELQAGARV-EVSDSKRDPLDFVLWKKA 190
Query: 121 MPSAPAPDGLPSETQIAQSLA 141
P P D E + +
Sbjct: 191 KPGEPKWDSPWGEGRPGWHIE 211
>4A6D-A nrPDB
Length = 353
Score = 29.4 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 36 GGQVVGQALYAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDG-NSFSARRVAA 94
GG +V ++L P ++S + G + P Y + G F ++ A
Sbjct: 277 GGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGA 336
Query: 95 IQN 97
I +
Sbjct: 337 IYD 339
>3CZP-A nrPDB
Length = 500
Score = 27.8 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 13 NLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKE 49
LE+ + F + G +F G Q LYA E
Sbjct: 84 ELERPPQWRFWRRLPPKGRTGIFFGNWYSQMLYARVE 120
>4XWH-A nrPDB
Length = 720
Score = 27.4 bits (59), Expect = 6.6, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 203 SDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGF 260
S N A + H L + ++ S+W++R W L + S +++ F
Sbjct: 477 SVYNCSGEACRGHNRSPLVRRPSL-QMNTSIWYNRSDVFEAWRLLLTSAPSLATSPAF 533
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.303 0.124 0.324
Lambda K H
0.267 0.0383 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,080,256
Number of Sequences: 36641
Number of extensions: 383158
Number of successful extensions: 1091
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 38
length of query: 286
length of database: 10,336,785
effective HSP length: 96
effective length of query: 190
effective length of database: 6,819,249
effective search space: 1295657310
effective search space used: 1295657310
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 58 (27.0 bits)