BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P0AGG2 (286 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1C8U-A nrPDB 588 e-169 4QFW-A nrPDB 458 e-129 3U0A-A nrPDB 171 4e-43 3RD7-A nrPDB 164 5e-41 4R9Z-A nrPDB 136 1e-32 1TBU-A nrPDB 65 5e-11 2C54-A nrPDB 32 0.25 1X6R-A nrPDB 32 0.29 5VXY-A nrPDB 31 0.48 5NP9-A nrPDB 31 0.73 6GCS-B nrPDB 29 2.4 3R77-A nrPDB 28 3.5 2UYA-A nrPDB 27 6.8 5TE0-A nrPDB 27 7.6 4MWI-A nrPDB 27 7.7 1BD3-D nrPDB 27 9.8 >1C8U-A nrPDB Length = 285 Score = 588 bits (1516), Expect = e-169, Method: Compositional matrix adjust. Identities = 285/285 (100%), Positives = 285/285 (100%) Query: 2 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH 61 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH Sbjct: 1 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH 60 Query: 62 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM 121 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM Sbjct: 61 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM 120 Query: 122 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 181 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW Sbjct: 121 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 180 Query: 182 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 241 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL Sbjct: 181 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 240 Query: 242 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN 286 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN Sbjct: 241 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN 285 >4QFW-A nrPDB Length = 288 Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust. Identities = 225/285 (78%), Positives = 254/285 (89%) Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60 MSQAL+ LL LL+LEKIEEG+FRGQSEDLGLRQVFGGQVVGQA+YAAK+TVP ER VHSF Sbjct: 1 MSQALEKLLDLLDLEKIEEGIFRGQSEDLGLRQVFGGQVVGQAIYAAKQTVPAERTVHSF 60 Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120 HSYFLRPGDS KPIIYDVETLRDGNSFSARRV+AIQNGKPIFYMTASFQ+ E GFEHQ T Sbjct: 61 HSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNT 120 Query: 121 MPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQV 180 MP P P+GL SET IA+ +HL+P +++KFI +P+E+RPV+FHNPL+G V EP+R V Sbjct: 121 MPDVPPPEGLMSETDIARQFSHLIPEKVREKFIGPQPIEMRPVKFHNPLQGSVEEPNRYV 180 Query: 181 WIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFN 240 W RANG +PDDLRVHQYLLGYASD NFLP ALQPHGIGFLEPG+QIATIDHSMWFHRPF Sbjct: 181 WFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFR 240 Query: 241 LNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNH 285 L++WLLY+VESTSAS ARGFVRG+ Y ++GVLVASTVQEGV+R H Sbjct: 241 LDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH 285 >3U0A-A nrPDB Length = 285 Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 112/279 (40%), Positives = 155/279 (55%), Gaps = 19/279 (6%) Query: 11 LLNLEKIEEGLFRGQS---EDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFHSYFLRP 67 +L+LE++E ++RG E L++ FGG V GQ+L +A TV VHS H YFLR Sbjct: 10 ILDLEQLEVNIYRGSVFSPESGFLQRTFGGHVAGQSLVSAVRTVDPRYQVHSLHGYFLRS 69 Query: 68 GDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSAPAP 127 GD+++P ++ VE RDG SF RRV A+Q+G+ IF M ASFQ + G HQ MP+AP P Sbjct: 70 GDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAAPPP 129 Query: 128 DGLPSETQIAQSLAHLLPPVLKD---KFICDRPLEVRPVEFHNPLKGHVAEPHRQVWIRA 184 D LP + V D + + + + P + PL G ++ +QVW R Sbjct: 130 DDLPGLRSVR---------VFDDAGFRQFEEWDVRIVPRDLLAPLPGKASQ--QQVWFRH 178 Query: 185 NGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEW 244 +PDD +H L Y SDL L A H + E +Q+A++DH+MWF R F +EW Sbjct: 179 RDPLPDDPVLHICALAYMSDLTLLGSAQVTH-LAEREH-LQVASLDHAMWFMRGFRADEW 236 Query: 245 LLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMR 283 LLY S SA R G+ +TQ G LVA+ +QEG+ R Sbjct: 237 LLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTR 275 >3RD7-A nrPDB Length = 286 Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 145/286 (50%), Gaps = 15/286 (5%) Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60 M L+++L+LL+L++I++ F G D + G QV QAL AA T P RL HS Sbjct: 3 MISTLEDVLSLLDLQQIDDAAFVGTQPDTPNHHIIGSQVAAQALMAAGRTTPG-RLAHSM 61 Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120 H YFLR GD+++PI YDV LRDG + S+RRV A Q+G +F ASF + Q+ Sbjct: 62 HMYFLRRGDARQPIQYDVTPLRDGGTISSRRVTASQSGVVLFEALASFTIIADDVDWQQR 121 Query: 121 MPSAPAPDGLPSETQIAQSLAHLLPPVLK---DKFICDRPLEVRPVEFHNPLKGHVAE-- 175 MP P + L LL P + D + RP +R ++ + +++ Sbjct: 122 MPDVAGPSAV-------HGLEDLLAPYAEEFGDWWPQQRPFTMRYLDAPPRVALDLSDPP 174 Query: 176 -PHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMW 234 P ++W+RANG V DD V+ ++ Y S L L + + P + A +DH++W Sbjct: 175 PPRLRIWLRANGEVTDDPLVNSCVVAYLSALTLLECVMTTMRTTPVGPRLS-ALVDHTIW 233 Query: 235 FHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEG 280 FHR + +WLL+ S S RG G Y + G LV QEG Sbjct: 234 FHRAADFTDWLLFDQFSPSIVGRRGLATGTLYNRSGELVCIATQEG 279 >4R9Z-A nrPDB Length = 278 Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 20/283 (7%) Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60 MS +L ++L L LE++ + F GQ + GG + QAL AA T R HS Sbjct: 4 MSSSLGDVLATLELERVGQWRFVGQQLPAPANHILGGHISAQALLAASRTA-AGREPHSV 62 Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQ---APEAGFEH 117 H+YFLRPGDS++P+ ++V L++G +FSARRV A Q+ K + +SF+ + A + Sbjct: 63 HTYFLRPGDSRQPVDFEVVDLQEGRTFSARRVTARQDDKILMEAMSSFKVVNSAAAQVVY 122 Query: 118 QKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPH 177 Q MP AP+P+ LP +A LA + ++ R E R +E V Sbjct: 123 QPIMPEAPSPESLP---WVAPHLAE-ADEGSRGRWASLRWFERRTIETETVPPARVP--- 175 Query: 178 RQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQI-ATIDHSMWFH 236 +W R +G VPDD + L+ Y S + A G G+ A DHS+WFH Sbjct: 176 --MWWRPDGRVPDDPVLTASLVAYMSAVTLTEPAFAARG------GVGASAQRDHSVWFH 227 Query: 237 RPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQE 279 L++WL Y S S++ + G + + G LV + QE Sbjct: 228 GRAVLSDWLFYDRSSPSSAGSLALASGTMFNRTGELVCTVKQE 270 >1TBU-A nrPDB Length = 118 Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Query: 4 ALKNLLTLLNLEKIEEGLFRGQ---SEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60 A+ NL +L L + F + + +G + FGG +V Q+L A+ TVP S Sbjct: 7 AMSNLEKILELVPLSPTSFVTKYLPAAPVGSKGTFGGTLVSQSLLASLHTVPLNFFPTSL 66 Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF 102 HSYF++ GD + I Y V+ LR+G +F ++V+A Q+ K IF Sbjct: 67 HSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIF 108 >2C54-A nrPDB Length = 379 Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 86 SFSARRVAAIQNGKPIFYMTASFQAPEAGFEH-QKTMPSAPAPDGLPSETQIAQSLAHLL 144 SF+ A I K FY +++ PE F+ + T S D P+E Q A L L Sbjct: 125 SFNMIEAARINGIKRFFYASSACIYPE--FKQLETTNVSLKESDAWPAEPQDAYGLERLA 182 Query: 145 PPVLKDKFICDRPLEVRPVEFHN 167 L + D +E R FHN Sbjct: 183 TEELCKHYNKDFGIECRIGRFHN 205 >1X6R-A nrPDB Length = 123 Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 167 NPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFL-PVALQPH 215 NPLK V E + W +G+ +D + LG A+D N L +AL+P Sbjct: 20 NPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPD 69 >5VXY-A nrPDB Length = 144 Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 167 NPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFL-PVALQPH 215 NPLK V E + W +G+ +D + LG A+D N L +AL+P Sbjct: 41 NPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPD 90 >5NP9-A nrPDB Length = 158 Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Query: 25 QSEDLGLRQVFGGQVVGQALYA--AKETVPEERLVHSFHSYFLRPGDSKKPIIY 76 +SEDLGL + F GQ V +A +E +P+ERL R GD ++ I + Sbjct: 87 ESEDLGLDEYFHGQGVCLVEWAHLIEEQLPQERL----QIVIKRAGDDEREITF 136 >6GCS-B nrPDB Length = 488 Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 221 EPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVL 272 EPG D + P L E L + + +A++A ++RGEFY + VL Sbjct: 123 EPG---TCKDREIMRKDPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAAVL 171 >3R77-A nrPDB Length = 209 Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 20/92 (21%) Query: 56 LVHSFHSYFLRPGDSKKPIIYDVETLRD---GNSFSARRVAAIQNGKPIFYMTASFQAPE 112 LVH+ YFLRP + LRD GN+ R+ AA NG P+ Y P Sbjct: 37 LVHAMQRYFLRPLP---------DALRDQVVGNAARIRQWAA-DNGVPVAYTA----QPG 82 Query: 113 AGFEHQKTMPS---APAPDGLPSETQIAQSLA 141 + E Q+ + P P++ ++ +LA Sbjct: 83 SMNEEQRGLLKDFWGPGMKASPTDREVVDALA 114 >2UYA-A nrPDB Length = 383 Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 204 DLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASS 256 DL + P L PH I LE G + + F F L +WL ++ + A++ Sbjct: 130 DLWYFPSGL-PHSIQALEEGAEFLLVFDDGSFSSTFQLTDWLAHTPKEVIAAN 181 >5TE0-A nrPDB Length = 347 Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Query: 57 VHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARR----VAAIQNGKPIFYMTASFQAPE 112 +H Y L P K+P IY V SF + + +QN + +A E Sbjct: 261 MHCLIRYMLEPDPDKRPDIYQVSYF----SFKLLKKECPIPNVQNSPIPAKLPEPVKASE 316 Query: 113 AGFEHQKTMPSAPAPDGLP-SETQIA 137 A +KT P A D +P +ET IA Sbjct: 317 AA--AKKTQPKARLTDPIPTTETSIA 340 >4MWI-A nrPDB Length = 294 Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 102 FYMTASFQAPEAGFEHQKTMPSAPAPDGLPSE-TQIAQSLAHLLPPVLKDKF 152 F +T +Q AGFE +KT S G E T +S A+L P L+D F Sbjct: 160 FLVTQGYQVKLAGFELRKTQTSMSL--GTTREKTDRVKSTAYLSPQELEDVF 209 >1BD3-D nrPDB Length = 243 Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 24 GQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVH 58 G+S + GLR V G +G+ L ET E +L++ Sbjct: 113 GESMESGLRAVCRGVRIGKILIQRDETTAEPKLIY 147 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1C8U-A nrPDB 454 e-128 4QFW-A nrPDB 431 e-121 3RD7-A nrPDB 370 e-103 4R9Z-A nrPDB 342 1e-94 3U0A-A nrPDB 335 1e-92 1TBU-A nrPDB 146 2e-35 Sequences not found previously or not previously below threshold: 1AD5-A nrPDB 36 0.016 3BBY-A nrPDB 32 0.39 3KZO-A nrPDB 31 0.77 2AWA-A nrPDB 30 1.1 3TQO-A nrPDB 30 1.4 4A6D-A nrPDB 29 1.9 3CZP-A nrPDB 28 5.3 4XWH-A nrPDB 27 6.6 CONVERGED! >1C8U-A nrPDB Length = 285 Score = 454 bits (1168), Expect = e-128, Method: Composition-based stats. Identities = 285/285 (100%), Positives = 285/285 (100%) Query: 2 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH 61 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH Sbjct: 1 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH 60 Query: 62 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM 121 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM Sbjct: 61 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM 120 Query: 122 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 181 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW Sbjct: 121 PSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 180 Query: 182 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 241 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL Sbjct: 181 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 240 Query: 242 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN 286 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN Sbjct: 241 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN 285 >4QFW-A nrPDB Length = 288 Score = 431 bits (1107), Expect = e-121, Method: Composition-based stats. Identities = 225/285 (78%), Positives = 254/285 (89%) Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60 MSQAL+ LL LL+LEKIEEG+FRGQSEDLGLRQVFGGQVVGQA+YAAK+TVP ER VHSF Sbjct: 1 MSQALEKLLDLLDLEKIEEGIFRGQSEDLGLRQVFGGQVVGQAIYAAKQTVPAERTVHSF 60 Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120 HSYFLRPGDS KPIIYDVETLRDGNSFSARRV+AIQNGKPIFYMTASFQ+ E GFEHQ T Sbjct: 61 HSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNT 120 Query: 121 MPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQV 180 MP P P+GL SET IA+ +HL+P +++KFI +P+E+RPV+FHNPL+G V EP+R V Sbjct: 121 MPDVPPPEGLMSETDIARQFSHLIPEKVREKFIGPQPIEMRPVKFHNPLQGSVEEPNRYV 180 Query: 181 WIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFN 240 W RANG +PDDLRVHQYLLGYASD NFLP ALQPHGIGFLEPG+QIATIDHSMWFHRPF Sbjct: 181 WFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFR 240 Query: 241 LNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNH 285 L++WLLY+VESTSAS ARGFVRG+ Y ++GVLVASTVQEGV+R H Sbjct: 241 LDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH 285 >3RD7-A nrPDB Length = 286 Score = 370 bits (949), Expect = e-103, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 145/286 (50%), Gaps = 15/286 (5%) Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60 M L+++L+LL+L++I++ F G D + G QV QAL AA T P RL HS Sbjct: 3 MISTLEDVLSLLDLQQIDDAAFVGTQPDTPNHHIIGSQVAAQALMAAGRTTP-GRLAHSM 61 Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120 H YFLR GD+++PI YDV LRDG + S+RRV A Q+G +F ASF + Q+ Sbjct: 62 HMYFLRRGDARQPIQYDVTPLRDGGTISSRRVTASQSGVVLFEALASFTIIADDVDWQQR 121 Query: 121 MPSAPAPDGLPSETQIAQSLAHLLPPVLK---DKFICDRPLEVRPVEFHNPLKGHVAE-- 175 MP P + L LL P + D + RP +R ++ + +++ Sbjct: 122 MPDVAGPSAV-------HGLEDLLAPYAEEFGDWWPQQRPFTMRYLDAPPRVALDLSDPP 174 Query: 176 -PHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMW 234 P ++W+RANG V DD V+ ++ Y S L L + + P + A +DH++W Sbjct: 175 PPRLRIWLRANGEVTDDPLVNSCVVAYLSALTLLECVMTTMRTTPVGPRLS-ALVDHTIW 233 Query: 235 FHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEG 280 FHR + +WLL+ S S RG G Y + G LV QEG Sbjct: 234 FHRAADFTDWLLFDQFSPSIVGRRGLATGTLYNRSGELVCIATQEG 279 >4R9Z-A nrPDB Length = 278 Score = 342 bits (876), Expect = 1e-94, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 20/283 (7%) Query: 1 MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60 MS +L ++L L LE++ + F GQ + GG + QAL AA T R HS Sbjct: 4 MSSSLGDVLATLELERVGQWRFVGQQLPAPANHILGGHISAQALLAASRTA-AGREPHSV 62 Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQ---APEAGFEH 117 H+YFLRPGDS++P+ ++V L++G +FSARRV A Q+ K + +SF+ + A + Sbjct: 63 HTYFLRPGDSRQPVDFEVVDLQEGRTFSARRVTARQDDKILMEAMSSFKVVNSAAAQVVY 122 Query: 118 QKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPH 177 Q MP AP+P+ LP +A LA + ++ R E R +E V Sbjct: 123 QPIMPEAPSPESLP---WVAPHLAE-ADEGSRGRWASLRWFERRTIETETVPPARVP--- 175 Query: 178 RQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQI-ATIDHSMWFH 236 +W R +G VPDD + L+ Y S + A G G+ A DHS+WFH Sbjct: 176 --MWWRPDGRVPDDPVLTASLVAYMSAVTLTEPAFAARG------GVGASAQRDHSVWFH 227 Query: 237 RPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQE 279 L++WL Y S S++ + G + + G LV + QE Sbjct: 228 GRAVLSDWLFYDRSSPSSAGSLALASGTMFNRTGELVCTVKQE 270 >3U0A-A nrPDB Length = 285 Score = 335 bits (859), Expect = 1e-92, Method: Composition-based stats. Identities = 112/282 (39%), Positives = 156/282 (55%), Gaps = 19/282 (6%) Query: 8 LLTLLNLEKIEEGLFRGQS---EDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFHSYF 64 + +L+LE++E ++RG E L++ FGG V GQ+L +A TV VHS H YF Sbjct: 7 IEEILDLEQLEVNIYRGSVFSPESGFLQRTFGGHVAGQSLVSAVRTVDPRYQVHSLHGYF 66 Query: 65 LRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSA 124 LR GD+++P ++ VE RDG SF RRV A+Q+G+ IF M ASFQ + G HQ MP+A Sbjct: 67 LRSGDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAA 126 Query: 125 PAPDGLPSETQIAQSLAHLLPPVLKD---KFICDRPLEVRPVEFHNPLKGHVAEPHRQVW 181 P PD LP + V D + + + + P + PL G ++ +QVW Sbjct: 127 PPPDDLPGLRSVR---------VFDDAGFRQFEEWDVRIVPRDLLAPLPGKASQ--QQVW 175 Query: 182 IRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNL 241 R +PDD +H L Y SDL L A H + E +Q+A++DH+MWF R F Sbjct: 176 FRHRDPLPDDPVLHICALAYMSDLTLLGSAQVTH-LAEREH-LQVASLDHAMWFMRGFRA 233 Query: 242 NEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMR 283 +EWLLY S SA R G+ +TQ G LVA+ +QEG+ R Sbjct: 234 DEWLLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTR 275 >1TBU-A nrPDB Length = 118 Score = 146 bits (367), Expect = 2e-35, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Query: 4 ALKNLLTLLNLEKIEEGLFRGQ---SEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF 60 A+ NL +L L + F + + +G + FGG +V Q+L A+ TVP S Sbjct: 7 AMSNLEKILELVPLSPTSFVTKYLPAAPVGSKGTFGGTLVSQSLLASLHTVPLNFFPTSL 66 Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAP 111 HSYF++ GD + I Y V+ LR+G +F ++V+A Q+ K IF F Sbjct: 67 HSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFAVQ 117 >1AD5-A nrPDB Length = 438 Score = 36.3 bits (82), Expect = 0.016, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 23/152 (15%) Query: 6 KNLLTLLNLEKIEEGLFRGQSEDLGLRQVFG-GQVVGQALYAAKETVPEERLVHSFHSYF 64 N + ++ + EE F+G S RQ+ G ++G + ET + S Y Sbjct: 52 SNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSL-SVRDYD 110 Query: 65 LRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSA 124 R GD+ K Y + TL +G + + R ++F + +H K Sbjct: 111 PRQGDTVK--HYKIRTLDNGGFYISPR--------------STFSTLQELVDHYKK---- 150 Query: 125 PAPDGLPSETQIAQSLAHLLPPVLKDKFICDR 156 DGL + + + P KD + R Sbjct: 151 -GNDGLCQKLSVPCMSSKPQKPWEKDAWEIPR 181 >3BBY-A nrPDB Length = 215 Score = 31.7 bits (70), Expect = 0.39, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 4/45 (8%) Query: 141 AHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVWIRAN 185 + + L+D+F + P++ N + Q W+R++ Sbjct: 73 SSAIAEYLEDRFAPPTWERIYPLDLENRARAR----QIQAWLRSD 113 >3KZO-A nrPDB Length = 359 Score = 30.5 bits (67), Expect = 0.77, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 4 ALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF--- 60 +LK+ L + + E Q+ L R G ++ G+++ A P R SF Sbjct: 22 SLKHFLNTQDWSRAELDALLTQAA-LFKRNKLGSELKGKSI-ALVFFNPSMRTRTSFELG 79 Query: 61 ------HSYFLRPGDSKKPIIYDVETLRDGNS 86 H+ L+PG PI +++ T+ DG++ Sbjct: 80 AFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDT 111 >2AWA-A nrPDB Length = 390 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 9/110 (8%) Query: 65 LRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFY-----MTASFQAPEAGFEHQK 119 L P D I ++V LR + +A QNG ++A +PE G +++ Sbjct: 267 LIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDGVVSAHVHSPEVGKVNEE 326 Query: 120 TMPSAPAPDGLP---SETQIAQSLAHLLPPVLKDKFICD-RPLEVRPVEF 165 + L + T + SL L + FI RP + P + Sbjct: 327 IDTDQVTGEDLTISFNPTYLIDSLKALNSEKVTISFISAVRPFTLVPADT 376 >3TQO-A nrPDB Length = 462 Score = 29.8 bits (65), Expect = 1.4, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 61 HSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT 120 ++Y + GD + +DV +D S R + +Q G + ++ S + P +K Sbjct: 136 YAYTGQNGD----VFFDVRRFKDYGKLSHRHLDELQAGARV-EVSDSKRDPLDFVLWKKA 190 Query: 121 MPSAPAPDGLPSETQIAQSLA 141 P P D E + + Sbjct: 191 KPGEPKWDSPWGEGRPGWHIE 211 >4A6D-A nrPDB Length = 353 Score = 29.4 bits (64), Expect = 1.9, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 36 GGQVVGQALYAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDG-NSFSARRVAA 94 GG +V ++L P ++S + G + P Y + G F ++ A Sbjct: 277 GGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGA 336 Query: 95 IQN 97 I + Sbjct: 337 IYD 339 >3CZP-A nrPDB Length = 500 Score = 27.8 bits (60), Expect = 5.3, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 15/37 (40%) Query: 13 NLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKE 49 LE+ + F + G +F G Q LYA E Sbjct: 84 ELERPPQWRFWRRLPPKGRTGIFFGNWYSQMLYARVE 120 >4XWH-A nrPDB Length = 720 Score = 27.4 bits (59), Expect = 6.6, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 203 SDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGF 260 S N A + H L + ++ S+W++R W L + S +++ F Sbjct: 477 SVYNCSGEACRGHNRSPLVRRPSL-QMNTSIWYNRSDVFEAWRLLLTSAPSLATSPAF 533 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.303 0.124 0.324 Lambda K H 0.267 0.0383 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,080,256 Number of Sequences: 36641 Number of extensions: 383158 Number of successful extensions: 1091 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 1053 Number of HSP's gapped (non-prelim): 38 length of query: 286 length of database: 10,336,785 effective HSP length: 96 effective length of query: 190 effective length of database: 6,819,249 effective search space: 1295657310 effective search space used: 1295657310 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 58 (27.0 bits)