BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P0AEZ3 (270 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3R9I-A nrPDB 517 e-147 4V03-A nrPDB 230 4e-61 1ION-A nrPDB 110 4e-25 1G3Q-A nrPDB 109 1e-24 1HYQ-A nrPDB 108 3e-24 4RZ3-A nrPDB 81 5e-16 5JVF-A nrPDB 46 2e-05 5AUQ-A nrPDB 45 5e-05 1WCV-1 nrPDB 44 5e-05 3KB1-A nrPDB 42 2e-04 6G2G-A nrPDB 42 4e-04 2PH1-A nrPDB 41 5e-04 4JMP-A nrPDB 40 0.001 4JLV-A nrPDB 39 0.002 5ZME-A nrPDB 39 0.002 1IHU-A nrPDB 37 0.012 1G21-E nrPDB 34 0.070 2YNM-A nrPDB 33 0.087 6Q93-A nrPDB 33 0.092 1CP2-A nrPDB 33 0.12 4CWE-A nrPDB 31 0.45 4X8R-A nrPDB 31 0.55 4CWC-A nrPDB 31 0.58 3FWY-A nrPDB 29 1.7 5L3R-A nrPDB 29 1.8 3UIE-A nrPDB 29 1.9 1YR7-A nrPDB 29 2.1 4M4W-J nrPDB 29 2.2 3OHM-B nrPDB 29 2.5 4QJ3-B nrPDB 28 2.9 1ATT-A nrPDB 28 3.3 3P4X-A nrPDB 28 3.6 4GBM-A nrPDB 28 4.2 3LKD-A nrPDB 28 4.3 3DO6-A nrPDB 27 6.6 3CR8-A nrPDB 27 6.9 6QEL-G nrPDB 27 7.0 4OI0-A nrPDB 27 7.1 5GAF-i nrPDB 27 8.8 3CIO-A nrPDB 27 9.8 1MU2-A nrPDB 27 9.8 >3R9I-A nrPDB Length = 260 Score = 517 bits (1332), Expect = e-147, Method: Compositional matrix adjust. Identities = 259/260 (99%), Positives = 259/260 (99%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDF IGLRNLDLIMGCERRVVYDF Sbjct: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDF 60 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCD 120 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCD Sbjct: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCD 120 Query: 121 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL 180 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL Sbjct: 121 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL 180 Query: 181 TRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA 240 TRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA Sbjct: 181 TRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA 240 Query: 241 DTVERLLGEERPFRFIEEEK 260 DTVERLLGEERPFRFIEEEK Sbjct: 241 DTVERLLGEERPFRFIEEEK 260 >4V03-A nrPDB Length = 257 Score = 230 bits (587), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 116/255 (45%), Positives = 179/255 (70%), Gaps = 9/255 (3%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 MA +IV+TSGKGGVGKTT +A I T LA+ GKK ++ID DIGLRNLD+I+G E R+VYD Sbjct: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLK-AMDFEFIVC 119 ++V++G +AL+KDKR +L++LPA+Q +KD + E K ++++K + ++++I+ Sbjct: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120 Query: 120 DSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLL 179 DSPAGIE G +A+ AD+A+I NPEVSS+RD+DR++G+L S +R ++ Sbjct: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR--------NYKVI 172 Query: 180 LTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAY 239 + R V RG MLS+ED+++IL+ +++G+IPE+ ++ +N+GEP++LD A +A Sbjct: 173 VNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAI 232 Query: 240 ADTVERLLGEERPFR 254 DT RL+GE P + Sbjct: 233 IDTARRLMGESIPLK 247 >1ION-A nrPDB Length = 243 Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 130/230 (56%), Gaps = 18/230 (7%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 M RII + SGKGG GKTT +A ++ L + G+K + +D D+ + NL L++G + V Sbjct: 1 MTRIISIVSGKGGTGKTTVTANLSVALGEMGRKVLAVDGDLTMANLSLVLGVD-DVNITL 59 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAM--DFEFIV 118 +V+ GDA L A I + EN+YILP + D + + + K+ + +K++ ++FI+ Sbjct: 60 HDVLAGDAKLEDA-IYMTQFENVYILPGAV--DWEHVIKADPRKLPEVIKSLKGKYDFIL 116 Query: 119 CDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHL 178 D PAG++ A+ A+ +EAI+ TNPE+S + D+ ++ G++ K+ A G Sbjct: 117 IDCPAGLQLRAMSAMLSGEEAILVTNPEISCLTDTMKV-GMVLKKAGLAILG-------F 168 Query: 179 LLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI 228 +L RY GR R + E +++ + L+ VIPED + + +G P + Sbjct: 169 ILNRY--GRSERD--IPPEAAQDVMDVPLLAVIPEDPVIREGTLEGIPAV 214 >1G3Q-A nrPDB Length = 237 Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 131/230 (56%), Gaps = 18/230 (7%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 M RII + SGKGG GKTT +A ++ L +G+K + +D D+ + NL L++G + V Sbjct: 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVT-L 59 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAM--DFEFIV 118 +V+ G+A + A I + +N+Y+LP + D + + + K+ + +K++ F+FI+ Sbjct: 60 HDVLAGEANVEDA-IYMTQFDNVYVLPGAV--DWEHVLKADPRKLPEVIKSLKDKFDFIL 116 Query: 119 CDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHL 178 D PAG++ A+ A+ +EA++ TNPE+S + D+ ++ GI+ K+ A G Sbjct: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV-GIVLKKAGLAILG-------F 168 Query: 179 LLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI 228 +L RY GR R + E +++ + L+ VIPED ++ + +G P + Sbjct: 169 VLNRY--GRSDRD--IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAV 214 >1HYQ-A nrPDB Length = 263 Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 141/283 (49%), Gaps = 41/283 (14%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 M R I V SGKGG GKTT +A + LAQ G ++D DI + NL+LI+G E V Sbjct: 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPV-TL 59 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKV----LDDLKAMDFE- 115 NV+ G+A +++A +Y+ P ++ EG+ K L+D+ E Sbjct: 60 QNVLAGEARIDEA---------IYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMES 110 Query: 116 --FIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEP 173 ++ D+PAG+E A++A+ A E ++ NPE+SS+ D L +K Sbjct: 111 TDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDG------LKTK---------- 154 Query: 174 IKEHLLLTRYNPGRVSRGDMLSME----DVLEILRIKLVGVIPEDQSVLRASNQGEPVIL 229 I L T+ V+R L +E ++ IL K++G+IPED V RA+ G+PV+L Sbjct: 155 IVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVL 214 Query: 230 -DINADAGKAYADTVERLLGEER---PFRFIEEEKKGFLKRLF 268 N+ A +A + + G + P E++K+G L ++ Sbjct: 215 RSPNSPAARAIVELANYIAGGAKKKVPAEVKEKKKEGALAKML 257 >4RZ3-A nrPDB Length = 295 Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 131/282 (46%), Gaps = 35/282 (12%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVN 62 R I VTSGKGGVGK+ S + L++ G + +++D IG+ N+D+++G + + Sbjct: 31 RTIAVTSGKGGVGKSNVSLNFSLSLSKLGFRVLLLDMAIGMGNIDILLGESSSLA--LAD 88 Query: 63 VIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAM--DFEFIVCD 120 L++ L+K YI + L + + L +L+A+ +++++ D Sbjct: 89 WFSARLPLSE-LVKSGPEHLSYIAGGTGAAQWQGLDTASIDRFLTELQAVASQYDYLIFD 147 Query: 121 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL 180 AG L L D+ + T PE +++ D+ ++ K A E P +++ Sbjct: 148 MGAGASGERLYFLKSVDDVFVVTTPEPTAMTDAYAMM-----KYMHAAGSEAPFS--VIV 200 Query: 181 TRYNPGRVSRGDMLSMEDVLEILR----------IKLVGVIPEDQSVLRASNQGEP-VIL 229 R G+ G +V E L+ I L+G+IPED++V RA P V+L Sbjct: 201 NR--AGKEREG-----YEVFERLKHVTGRFLNKDIALLGIIPEDRTVARAVVSQTPFVLL 253 Query: 230 DINADAGK-----AYADTVERLLGEERPFRFIEEEKKGFLKR 266 D A A K A+ +R G ER RF + ++ FL+R Sbjct: 254 DPAAKASKAVRQMAFRYAPQREEGTERASRFFAKLRQLFLER 295 >5JVF-A nrPDB Length = 285 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 96/211 (45%), Gaps = 25/211 (11%) Query: 20 SAAIATGLAQKGKKTVVIDFDIGLRNLDLIMG-CERRVVYDFVNVIQGDATLNQALIKDK 78 S +A LA G++ +++D D+GL N+D+++G +R + D VI+G L L+ Sbjct: 33 SVNLALALADLGRRVMLLDADLGLANVDVLLGLTPKRTLAD---VIEGRCELRDVLLLGP 89 Query: 79 RTENLYILPASQTRDK----DALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALY 134 + I+PA+ + G+ + D+ + + +V D+ AGI + + Sbjct: 90 --GGVRIVPAASGTQSMVHLSPMQHAGLIQAFSDISD-NLDVLVVDTAAGIGDSVVSFVR 146 Query: 135 FADEAIITTNPEVSSVRDSDRILGIL-----ASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 A E ++ E +S+ D+ ++ +L ++ R N +E GR Sbjct: 147 AAQEVLLVVCDEPTSITDAYALIKLLNRDHGMTRFRVLANMAHSPQE---------GRNL 197 Query: 190 RGDMLSMEDVLEILRIKLVGVIPEDQSVLRA 220 + + D + ++ VGVIP D+SV +A Sbjct: 198 FAKLTKVTDRFLDVALQYVGVIPYDESVRKA 228 >5AUQ-A nrPDB Length = 248 Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 17/172 (9%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVN 62 RII V SGKGGVGK+ S +A LA+KG + ++D D + +I+G E + +F Sbjct: 20 RIIPVVSGKGGVGKSLVSTTLALVLAEKGYRVGLLDLDFHGASDHVILGFEPK---EFPE 76 Query: 63 VIQGDATLNQALIKDKRTENLYILPASQTRDKDALTR-----EGVAKVLDDLKAMDFEFI 117 +G IK ++ A T D+ R + + ++L + + +++ Sbjct: 77 EDRGVVPPTVHGIK-------FMTIAYYTEDRPTPLRGKEISDALIELLTITRWDELDYL 129 Query: 118 VCDSPAGIETGALMALYFAD--EAIITTNPEVSSVRDSDRILGILASKSRRA 167 V D P G+ L L F E ++ P S+ +++ +L + + Sbjct: 130 VIDMPPGLGDQLLDVLRFLKRGEFLVVATPSKLSLNVVRKLIELLKEEGHKV 181 >1WCV-1 nrPDB Length = 257 Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 13/162 (8%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI-GLRNLDLIMGCERRVVYDFV 61 R I + + KGGVGKTT++ +A LA+ GK+ +++D D G L + ER V + Sbjct: 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYH--- 63 Query: 62 NVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVL-DDLKAMDFEFIVCD 120 ++QG+ + L+ + ++LPA+ + G L + L+ ++ ++ D Sbjct: 64 -LLQGEPL--EGLVHP--VDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLD 118 Query: 121 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILAS 162 +P + L AL A+ ++ E ++ + + G+LA+ Sbjct: 119 APPSLSPLTLNALAAAEGVVVPVQAEYYAL---EGVAGLLAT 157 >3KB1-A nrPDB Length = 262 Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 I V SGKGGVGK+T +A +A A++GKK ++D D ++ + G E+ V Sbjct: 21 IAVMSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLGPSIPHLFGLEKG------KVA 74 Query: 65 QGDATLNQALIKD---KRTENLYILPASQTR--DKDALTREGVAKVLDDLKAMDFEFIVC 119 D L L + K ++LP +T + L + + L + + ++++ Sbjct: 75 VSDEGLEPVLTQRLGIKVMSIQFLLPKRETPVIWRGPLIAGMIREFLGRVAWGELDYLLI 134 Query: 120 DSPAGIETGALMALYFA--DEAIITTNPE 146 D P G L + A + A+I + P+ Sbjct: 135 DLPPGTGDAPLTVMQDAKPNGAVIVSTPQ 163 >6G2G-A nrPDB Length = 310 Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 16/133 (12%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYD--- 59 II+V SGKGGVGK++ + +A L+Q G V+D D+ ++ + E V Sbjct: 8 HIILVLSGKGGVGKSSVTTQLALSLSQAGYSVGVLDVDLTGPSIPRMFAVEDAKVKQGSG 67 Query: 60 -FVNVIQGDATLNQALIKDKRTENL-YILPASQTRDKDALTREG------VAKVLDDLKA 111 ++ V+ +A + I R +L ++LP R DA+ G V + + D+ Sbjct: 68 GWLPVVVHEANPSTG-IGSLRVMSLGFLLP----RRGDAVIWRGPKKTAMVRQFMSDVLW 122 Query: 112 MDFEFIVCDSPAG 124 + +F++ D+P G Sbjct: 123 DELDFLLVDTPPG 135 >2PH1-A nrPDB Length = 262 Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 9/58 (15%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD---------IGLRNLDLIMGCE 53 I V SGKGGVGK+T +A +A A++GKK ++D D GLRN + + E Sbjct: 21 IAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAE 78 >4JMP-A nrPDB Length = 269 Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 IV+TS G GK+T +A +A AQ G KT+++D D+ I + ++ + Sbjct: 83 IVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNN---EGLSSL 139 Query: 65 QGDATLNQALIKDKRTENLYILPAS--QTRDKDALTREGVAKVLDDLKAMDFEFIVCDSP 122 + + Q I E+L +L + + +T A + D L M++ F++ D+P Sbjct: 140 LLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTL-LMNYNFVIIDTP 198 >4JLV-A nrPDB Length = 269 Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 ++VTS K G GK+T + +A AQ G KT+VID D+ + I + ++I Sbjct: 85 LLVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMRKPTQNYIFNEQNN--NGLSSLI 142 Query: 65 QGDATLNQALIKDKRTENLYILPASQT-RDKDALTREGVAKVLDDLKAMDFEFIVCDSP 122 G T+++A I ENL +L A + L K L DL ++ I+ D+P Sbjct: 143 IGRTTMSEA-ITSTEIENLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTP 200 >5ZME-A nrPDB Length = 687 Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 26/38 (68%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 R ++ SGKGGVGKT+ SA++A LA G T+V+ D Sbjct: 12 RKYIMISGKGGVGKTSLSASLAVKLAAAGHTTLVVSTD 49 >1IHU-A nrPDB Length = 589 Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 24/32 (75%) Query: 9 SGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 +GKGGVGKT+ S A A LA++GK+ +++ D Sbjct: 14 TGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 7/43 (16%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLD 47 +++ GKGGVGKTT +AAIA LA G FD+ L D Sbjct: 329 LIMLMGKGGVGKTTMAAAIAVRLADMG-------FDVHLTTSD 364 >1G21-E nrPDB Length = 289 Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 22/31 (70%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 GKGG+GK+T++ + LA+ GKK +++ D Sbjct: 10 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 40 >2YNM-A nrPDB Length = 301 Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 +++ GKGG+GK+T+S+ ++ ++ GKK + I D Sbjct: 35 LVIAVYGKGGIGKSTTSSNLSAAFSKLGKKVLQIGCD 71 >6Q93-A nrPDB Length = 290 Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 22/31 (70%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 GKGG+GK+T++ + LA+ GKK +++ D Sbjct: 10 GKGGIGKSTTTQNLVAALAEAGKKVMIVGCD 40 >1CP2-A nrPDB Length = 269 Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 27/46 (58%) Query: 6 VVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMG 51 V GKGG+GK+T++ + +GL GK +V+ D + L++G Sbjct: 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLG 49 >4CWE-A nrPDB Length = 281 Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 111 AMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSS--VRDSDRILGILASKSRRAE 168 A DFE + D A + +++ PE VRDSDR + I K R + Sbjct: 111 AFDFEDDLSDYYAMTDKAVKKTIFYGRNG----KPETKYFGVRDSDRFIRIYNKKQERKD 166 Query: 169 NGE-EPIKEHLL 179 N + E + EHL Sbjct: 167 NADVEVMSEHLW 178 >4X8R-A nrPDB Length = 327 Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 194 LSMEDVLEILRIKLVGVIPEDQSVLR-ASNQGEPVILDINADAGKAYADTV 243 L + +++ I +IK + PEDQ VLR A+ + EPV + A+ KA + V Sbjct: 233 LMVPELVAISKIKWDALSPEDQQVLRQAAEESEPVQRKLWAEQEKASEEKV 283 >4CWC-A nrPDB Length = 281 Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 111 AMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSS--VRDSDRILGILASKSRRAE 168 A DFE + D A + +++ PE VRDSDR + I K R + Sbjct: 111 AFDFEDDLSDYYAMTDKAVKKTIFYGRNG----KPETKYFGVRDSDRFIRIYNKKQERKD 166 Query: 169 NGE-EPIKEHLL 179 N + E + EHL Sbjct: 167 NADVEVMSEHLW 178 >3FWY-A nrPDB Length = 314 Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 + GKGG+GK+T+S+ ++ + GK+ + I D + + G V D + + Sbjct: 50 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDV 109 Query: 65 QGDATLNQALIKDKRTENLYILPASQTRDKDALTREG---VAKVLDDLKAM----DFEFI 117 D + +D E + + A T G V + + LK D + + Sbjct: 110 --DFHPEELRPEDFVFEGFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVV 167 Query: 118 VCDSPAGIETGALMA-LYFADEAIITTNPEVSSVRDSDRILGILASKSR 165 + D + G A L AD+A++ T + S+ +RI+ + +KS+ Sbjct: 168 IFDVLGDVVCGGFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSK 216 >5L3R-A nrPDB Length = 301 Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 24/37 (64%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 +++ +G GVGKTT A +A L ++GK ++I D+ Sbjct: 108 VILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDV 144 >3UIE-A nrPDB Length = 200 Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 ++ +G G GK+T + A+ L QKGK ++D D Sbjct: 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 >1YR7-A nrPDB Length = 262 Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNL 46 MA +IVV G G GKTT + L + K ++ D G++ L Sbjct: 12 MASMIVVFVGTAGSGKTTLTGEFGRYL-EDNYKVAYVNLDTGVKEL 56 >4M4W-J nrPDB Length = 317 Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 19/28 (67%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVI 37 GK GVGKT AAIA LA+K ++++ Sbjct: 168 GKFGVGKTFMLAAIANELAEKEYSSMIV 195 >3OHM-B nrPDB Length = 885 Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Query: 59 DFVNVIQGDATLNQALIKDKRTENLYIL-----PASQTRDKDALTREGVAKVL 106 DF+N Q D LN+ L R +L P Q ++D ++ EG ++ L Sbjct: 247 DFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYL 299 >4QJ3-B nrPDB Length = 793 Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Query: 59 DFVNVIQGDATLNQALIKDKRTENLYIL-----PASQTRDKDALTREGVAKVL 106 DF+N Q D LN+ L R +L P Q ++D ++ EG ++ L Sbjct: 249 DFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYL 301 >1ATT-A nrPDB Length = 429 Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 194 LSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLG 248 + +ED+ + +L G++ E +S L S+ L++N + +A A TV + G Sbjct: 335 MGLEDLFSPEKSRLPGIVAEGRSDLYVSDAFHKAFLEVNEEGSEAAASTVISIAG 389 >3P4X-A nrPDB Length = 413 Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust. Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 13 GVGKTTSSAAIATGLAQKGKKTVVI 37 GVGKTT A LA+KGKK+ ++ Sbjct: 45 GVGKTTFGMMTALWLARKGKKSALV 69 >4GBM-A nrPDB Length = 323 Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust. Identities = 14/26 (53%), Positives = 18/26 (69%) Query: 60 FVNVIQGDATLNQALIKDKRTENLYI 85 F+ V DAT +QALIKD ++NL I Sbjct: 92 FMEVKNLDATASQALIKDLESQNLSI 117 >3LKD-A nrPDB Length = 542 Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 203 LRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGE 249 L K +G P+ Q+ A+ E +LD+ AG D E L+G+ Sbjct: 141 LYSKKLGATPQKQNQTVAAVMKELAVLDVAGHAGDMLGDAYEYLIGQ 187 >3DO6-A nrPDB Length = 543 Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 20/33 (60%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 + VT G GKTT+S ++ L + GKK++V Sbjct: 48 VTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 >3CR8-A nrPDB Length = 552 Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTV-VIDFDIGLRNLDLIMG 51 V +G G GK+T + A+A L + G + V ++D DI R+L +G Sbjct: 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELG 418 >6QEL-G nrPDB Length = 245 Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 + SGK G GK +AAI L +GK ++I Sbjct: 103 IFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 >4OI0-A nrPDB Length = 431 Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 20/96 (20%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNL---------------D 47 R+++V G VGKTT S + ++G+ + ++ D+G ++ D Sbjct: 119 RLLLV--GPTDVGKTTVSRILCNYSVRQGRTPIFVELDVGQNSVSVPGTVAAVLVQKTAD 176 Query: 48 LIMGCERR--VVYDFVNVI-QGDATLNQALIKDKRT 80 +I G ER +V++F + + +L +AL K+ T Sbjct: 177 VIDGFERNQPIVFNFGHTSPSANLSLYEALFKEMAT 212 >5GAF-i nrPDB Length = 398 Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 20/33 (60%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 +V+ +G G GKTTS + L +K KK V++ Sbjct: 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 >3CIO-A nrPDB Length = 299 Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 I+++T GKT S+ +A +AQ +K + ID D+ Sbjct: 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 >1MU2-A nrPDB Length = 555 Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 139 AIITTNPEVSSVRDSDRILGILASKSRRAENG------EEPIKEHLLLTRYNPGR 187 A+ + P+V+ + DS ++GI+AS+ +E+ EE IK+ + + P Sbjct: 484 ALTDSGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAH 538 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3R9I-A nrPDB 329 8e-91 4V03-A nrPDB 272 1e-73 4RZ3-A nrPDB 230 5e-61 1ION-A nrPDB 217 6e-57 1G3Q-A nrPDB 217 6e-57 1HYQ-A nrPDB 198 1e-51 5JVF-A nrPDB 167 6e-42 5AUQ-A nrPDB 141 3e-34 3KB1-A nrPDB 138 3e-33 6G2G-A nrPDB 134 3e-32 1WCV-1 nrPDB 130 6e-31 2PH1-A nrPDB 129 1e-30 4JMP-A nrPDB 114 5e-26 Sequences not found previously or not previously below threshold: 4JLV-A nrPDB 95 4e-20 1G21-E nrPDB 70 1e-12 6Q93-A nrPDB 65 4e-11 1CP2-A nrPDB 60 8e-10 3LA6-A nrPDB 59 2e-09 3CIO-A nrPDB 58 5e-09 1IHU-A nrPDB 53 2e-07 3FWY-A nrPDB 52 3e-07 3EZ6-A nrPDB 51 8e-07 2YNM-A nrPDB 50 1e-06 1ZU4-A nrPDB 48 4e-06 3FKQ-A nrPDB 46 2e-05 5ZME-A nrPDB 46 2e-05 2YVU-A nrPDB 41 4e-04 1YR7-A nrPDB 41 7e-04 2GKS-A nrPDB 39 0.002 5L3R-A nrPDB 39 0.002 3UG7-A nrPDB 39 0.002 5CB6-A nrPDB 38 0.004 5L3S-A nrPDB 38 0.006 1QZX-A nrPDB 38 0.006 3MD0-A nrPDB 37 0.008 2IY3-A nrPDB 37 0.009 3ZQ6-A nrPDB 36 0.016 2FFH-A nrPDB 35 0.027 1J8M-F nrPDB 35 0.028 3C8U-A nrPDB 35 0.032 3CR8-A nrPDB 35 0.033 3DM5-A nrPDB 35 0.035 1RJ9-B nrPDB 35 0.036 4JYC-A nrPDB 35 0.040 3NXS-A nrPDB 35 0.041 3A4L-A nrPDB 35 0.041 6BS4-A nrPDB 34 0.056 5L3Q-B nrPDB 34 0.062 4ZIR-B nrPDB 34 0.066 6CUM-A nrPDB 34 0.072 3UIE-A nrPDB 34 0.083 3TK1-A nrPDB 34 0.083 6EJ5-A nrPDB 34 0.096 2WJV-A nrPDB 34 0.096 1FP7-A nrPDB 33 0.14 3J8G-X nrPDB 33 0.15 6NRP-A nrPDB 33 0.16 3D8N-A nrPDB 33 0.21 2P67-A nrPDB 32 0.26 3IBG-A nrPDB 32 0.32 2FGK-A nrPDB 32 0.34 4CVN-A nrPDB 31 0.42 6QEL-G nrPDB 31 0.45 4AK9-A nrPDB 31 0.48 2WOO-A nrPDB 31 0.48 2WWW-A nrPDB 31 0.48 5A5G-A nrPDB 31 0.52 6CS8-A nrPDB 31 0.54 3HJ6-A nrPDB 31 0.55 6BS5-B nrPDB 31 0.60 3IQW-A nrPDB 31 0.60 5GAD-l nrPDB 31 0.69 4BZX-A nrPDB 30 0.98 2PEY-A nrPDB 30 1.1 2OFX-A nrPDB 30 1.1 1X6V-B nrPDB 30 1.1 3JAJ-z nrPDB 30 1.3 3GP8-A nrPDB 30 1.3 6FRK-x nrPDB 30 1.3 5L3Q-A nrPDB 29 1.5 3P4X-A nrPDB 29 1.7 3DO6-A nrPDB 29 1.7 4OI0-A nrPDB 29 1.9 3NVA-A nrPDB 29 2.3 5OFO-C nrPDB 29 2.4 4B3F-X nrPDB 29 2.5 5A4J-A nrPDB 28 3.3 5LKM-A nrPDB 28 4.1 4CIU-A nrPDB 28 4.5 6CY1-A nrPDB 28 4.6 2V3C-C nrPDB 28 4.7 5GAF-i nrPDB 27 6.1 2IYT-A nrPDB 27 6.2 5GAD-i nrPDB 27 6.5 6D00-1 nrPDB 27 6.5 2J28-9 nrPDB 27 6.8 1NKS-A nrPDB 27 8.0 4C7O-A nrPDB 27 8.3 >3R9I-A nrPDB Length = 260 Score = 329 bits (843), Expect = 8e-91, Method: Composition-based stats. Identities = 259/260 (99%), Positives = 259/260 (99%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDF IGLRNLDLIMGCERRVVYDF Sbjct: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDF 60 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCD 120 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCD Sbjct: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCD 120 Query: 121 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL 180 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL Sbjct: 121 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL 180 Query: 181 TRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA 240 TRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA Sbjct: 181 TRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA 240 Query: 241 DTVERLLGEERPFRFIEEEK 260 DTVERLLGEERPFRFIEEEK Sbjct: 241 DTVERLLGEERPFRFIEEEK 260 >4V03-A nrPDB Length = 257 Score = 272 bits (695), Expect = 1e-73, Method: Composition-based stats. Identities = 116/255 (45%), Positives = 179/255 (70%), Gaps = 9/255 (3%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 MA +IV+TSGKGGVGKTT +A I T LA+ GKK ++ID DIGLRNLD+I+G E R+VYD Sbjct: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLK-AMDFEFIVC 119 ++V++G +AL+KDKR +L++LPA+Q +KD + E K ++++K + ++++I+ Sbjct: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120 Query: 120 DSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLL 179 DSPAGIE G +A+ AD+A+I NPEVSS+RD+DR++G+L S +R ++ Sbjct: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR--------NYKVI 172 Query: 180 LTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAY 239 + R V RG MLS+ED+++IL+ +++G+IPE+ ++ +N+GEP++LD A +A Sbjct: 173 VNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAI 232 Query: 240 ADTVERLLGEERPFR 254 DT RL+GE P + Sbjct: 233 IDTARRLMGESIPLK 247 >4RZ3-A nrPDB Length = 295 Score = 230 bits (586), Expect = 5e-61, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 21/275 (7%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVN 62 R I VTSGKGGVGK+ S + L++ G + +++D IG+ N+D+++G + + Sbjct: 31 RTIAVTSGKGGVGKSNVSLNFSLSLSKLGFRVLLLDMAIGMGNIDILLGESSSLA--LAD 88 Query: 63 VIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAM--DFEFIVCD 120 L++ L+K YI + L + + L +L+A+ +++++ D Sbjct: 89 WFSARLPLSE-LVKSGPEHLSYIAGGTGAAQWQGLDTASIDRFLTELQAVASQYDYLIFD 147 Query: 121 SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLL 180 AG L L D+ + T PE +++ D+ ++ K A E P +++ Sbjct: 148 MGAGASGERLYFLKSVDDVFVVTTPEPTAMTDAYAMM-----KYMHAAGSEAPFS--VIV 200 Query: 181 TRYNPGRVS---RGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEP-VILDINADAG 236 R R + + I L+G+IPED++V RA P V+LD A A Sbjct: 201 NRAGKEREGYEVFERLKHVTGRFLNKDIALLGIIPEDRTVARAVVSQTPFVLLDPAAKAS 260 Query: 237 K-----AYADTVERLLGEERPFRFIEEEKKGFLKR 266 K A+ +R G ER RF + ++ FL+R Sbjct: 261 KAVRQMAFRYAPQREEGTERASRFFAKLRQLFLER 295 >1ION-A nrPDB Length = 243 Score = 217 bits (551), Expect = 6e-57, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 19/249 (7%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 M RII + SGKGG GKTT +A ++ L + G+K + +D D+ + NL L++G + V Sbjct: 1 MTRIISIVSGKGGTGKTTVTANLSVALGEMGRKVLAVDGDLTMANLSLVLGVDD-VNITL 59 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKA--MDFEFIV 118 +V+ GDA L A I + EN+YILP + D + + + K+ + +K+ ++FI+ Sbjct: 60 HDVLAGDAKLEDA-IYMTQFENVYILPGAV--DWEHVIKADPRKLPEVIKSLKGKYDFIL 116 Query: 119 CDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHL 178 D PAG++ A+ A+ +EAI+ TNPE+S + D+ ++ G++ K+ A G Sbjct: 117 IDCPAGLQLRAMSAMLSGEEAILVTNPEISCLTDTMKV-GMVLKKAGLAILG-------F 168 Query: 179 LLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-LDINADAGK 237 +L RY GR R + E +++ + L+ VIPED + + +G P + + + Sbjct: 169 ILNRY--GRSERD--IPPEAAQDVMDVPLLAVIPEDPVIREGTLEGIPAVKYKPESKGAQ 224 Query: 238 AYADTVERL 246 A+ E + Sbjct: 225 AFIKLAEEV 233 >1G3Q-A nrPDB Length = 237 Score = 217 bits (551), Expect = 6e-57, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 M RII + SGKGG GKTT +A ++ L +G+K + +D D+ + NL L++G + V Sbjct: 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDV-TL 59 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKA--MDFEFIV 118 +V+ G+A + A I + +N+Y+LP + D + + + K+ + +K+ F+FI+ Sbjct: 60 HDVLAGEANVEDA-IYMTQFDNVYVLPGAV--DWEHVLKADPRKLPEVIKSLKDKFDFIL 116 Query: 119 CDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHL 178 D PAG++ A+ A+ +EA++ TNPE+S + D+ ++ GI+ K+ A G Sbjct: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV-GIVLKKAGLAILG-------F 168 Query: 179 LLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-LDINADAGK 237 +L RY GR R + E +++ + L+ VIPED ++ + +G P + + K Sbjct: 169 VLNRY--GRSDRD--IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAK 224 Query: 238 AYADTVERLL 247 A+ E + Sbjct: 225 AFVKLAEEIE 234 >1HYQ-A nrPDB Length = 263 Score = 198 bits (504), Expect = 1e-51, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 41/283 (14%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 M R I V SGKGG GKTT +A + LAQ G ++D DI + NL+LI+G E V Sbjct: 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPV-TL 59 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKV----LDDLKAMDF-- 114 NV+ G+A +++A +Y+ P ++ EG+ K L+D+ Sbjct: 60 QNVLAGEARIDEA---------IYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMES 110 Query: 115 -EFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEP 173 + ++ D+PAG+E A++A+ A E ++ NPE+SS+ D + Sbjct: 111 TDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLK----------------TK 154 Query: 174 IKEHLLLTRYNPGRVSRGDMLSME----DVLEILRIKLVGVIPEDQSVLRASNQGEPVIL 229 I L T+ V+R L +E ++ IL K++G+IPED V RA+ G+PV+L Sbjct: 155 IVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVL 214 Query: 230 -DINADAGKAYADTVERLLGEER---PFRFIEEEKKGFLKRLF 268 N+ A +A + + G + P E++K+G L ++ Sbjct: 215 RSPNSPAARAIVELANYIAGGAKKKVPAEVKEKKKEGALAKML 257 >5JVF-A nrPDB Length = 285 Score = 167 bits (422), Expect = 6e-42, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 111/261 (42%), Gaps = 25/261 (9%) Query: 18 TSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKD 77 S +A LA G++ +++D D+GL N+D+++G + +VI+G L L+ Sbjct: 31 NVSVNLALALADLGRRVMLLDADLGLANVDVLLGLTPK--RTLADVIEGRCELRDVLLLG 88 Query: 78 KRTENLYILPASQTRDK----DALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMAL 133 + I+PA+ + G+ + D+ + + + +V D+ AGI + + Sbjct: 89 P--GGVRIVPAASGTQSMVHLSPMQHAGLIQAFSDI-SDNLDVLVVDTAAGIGDSVVSFV 145 Query: 134 YFADEAIITTNPEVSSVRDSDRILGIL-----ASKSRRAENGEEPIKEHLLLTRYNPGRV 188 A E ++ E +S+ D+ ++ +L ++ R N +E GR Sbjct: 146 RAAQEVLLVVCDEPTSITDAYALIKLLNRDHGMTRFRVLANMAHSPQE---------GRN 196 Query: 189 SRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILD-INADAGKAYADTVERLL 247 + + D + ++ VGVIP D+SV +A + V + A A+ +++ Sbjct: 197 LFAKLTKVTDRFLDVALQYVGVIPYDESVRKAVQKQRAVYEAFPRSKASLAFKAVAQKVD 256 Query: 248 GEERPFRFIEEEKKGFLKRLF 268 P + F++RL Sbjct: 257 SWPLPANPRGHL-EFFVERLV 276 >5AUQ-A nrPDB Length = 248 Score = 141 bits (355), Expect = 3e-34, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 26/222 (11%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVN 62 RII V SGKGGVGK+ S +A LA+KG + ++D D + +I+G E + +F Sbjct: 20 RIIPVVSGKGGVGKSLVSTTLALVLAEKGYRVGLLDLDFHGASDHVILGFEPK---EFPE 76 Query: 63 VIQGDATLNQALIKDKRTENLYILPASQTRDKDALTR-----EGVAKVLDDLKAMDFEFI 117 +G IK ++ A T D+ R + + ++L + + +++ Sbjct: 77 EDRGVVPPTVHGIK-------FMTIAYYTEDRPTPLRGKEISDALIELLTITRWDELDYL 129 Query: 118 VCDSPAGIETGALMALYFAD--EAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIK 175 V D P G+ L L F E ++ P S+ +++ +L + + Sbjct: 130 VIDMPPGLGDQLLDVLRFLKRGEFLVVATPSKLSLNVVRKLIELLKEEGHKVIG------ 183 Query: 176 EHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSV 217 ++ D +E + E + + IP + Sbjct: 184 ---VVENMKLRSEQLDDEKDVEKLAEEFGVPYLVGIPFYPDL 222 >3KB1-A nrPDB Length = 262 Score = 138 bits (346), Expect = 3e-33, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 15/228 (6%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 I V SGKGGVGK+T +A +A A++GKK ++D D ++ + G E+ V Sbjct: 20 RIAVMSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLGPSIPHLFGLEKG------KV 73 Query: 64 IQGDATLNQALIKD---KRTENLYILPASQTR--DKDALTREGVAKVLDDLKAMDFEFIV 118 D L L + K ++LP +T + L + + L + + ++++ Sbjct: 74 AVSDEGLEPVLTQRLGIKVMSIQFLLPKRETPVIWRGPLIAGMIREFLGRVAWGELDYLL 133 Query: 119 CDSPAGIETGALMALYFA--DEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKE 176 D P G L + A + A+I + P+ + ++ + + E + Sbjct: 134 IDLPPGTGDAPLTVMQDAKPNGAVIVSTPQELTAAVVEKAITMAEQTKTAVLGIVENMAY 193 Query: 177 HLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQG 224 R ++ +I+ + IP D +L+ S+ G Sbjct: 194 FECPN--CGERTYLFGEGKASELARKYKIEFITEIPIDSDLLKLSDLG 239 >6G2G-A nrPDB Length = 310 Score = 134 bits (337), Expect = 3e-32, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 87/238 (36%), Gaps = 17/238 (7%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYD--- 59 II+V SGKGGVGK++ + +A L+Q G V+D D+ ++ + E V Sbjct: 8 HIILVLSGKGGVGKSSVTTQLALSLSQAGYSVGVLDVDLTGPSIPRMFAVEDAKVKQGSG 67 Query: 60 -FVNVIQGDATLNQALIKDKRTENLYILPASQTR--DKDALTREGVAKVLDDLKAMDFEF 116 ++ V+ +A + + + ++LP + V + + D+ + +F Sbjct: 68 GWLPVVVHEANPSTGIGSLRVMSLGFLLPRRGDAVIWRGPKKTAMVRQFMSDVLWDELDF 127 Query: 117 IVCDSPAGIETGALMALYF---------ADEAIITTNPEVSSVRDSDRILGILASKSRRA 167 ++ D+P G + AI+ T P+ + D + L R Sbjct: 128 LLVDTPPGTSDEHISLAETLLQEARPGQLSGAIVVTTPQAVATADVRKELNFCKKTGIRV 187 Query: 168 ENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGE 225 E + + + E + ++ +G +P D L G+ Sbjct: 188 LGVVENMSGFVCPN--CSECTNIFSSGGGEIMANDFNVRFLGRVPIDPQFLVLIETGK 243 >1WCV-1 nrPDB Length = 257 Score = 130 bits (326), Expect = 6e-31, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 14/250 (5%) Query: 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI-GLRNLDLIMGCERRVVYDF 60 R I + + KGGVGKTT++ +A LA+ GK+ +++D D G L + ER V + Sbjct: 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYH-- 63 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVL-DDLKAMDFEFIVC 119 ++QG+ + L+ + ++LPA+ + G L + L+ ++ ++ Sbjct: 64 --LLQGEPL--EGLVH--PVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLL 117 Query: 120 DSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLL 179 D+P + L AL A+ ++ E ++ + + G+LA+ ++ + Sbjct: 118 DAPPSLSPLTLNALAAAEGVVVPVQAEYYAL---EGVAGLLATLEEVRAGLNPRLRLLGI 174 Query: 180 LTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVIL-DINADAGKA 238 L GR + + VIP + + A + G+ + + A Sbjct: 175 LVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHA 234 Query: 239 YADTVERLLG 248 Y E ++ Sbjct: 235 YRRLAEEVMA 244 >2PH1-A nrPDB Length = 262 Score = 129 bits (324), Expect = 1e-30, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 71/182 (39%), Gaps = 7/182 (3%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 I V SGKGGVGK+T +A +A A++GKK ++D D ++ ++ G + Sbjct: 20 RIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAV---S 76 Query: 64 IQGDATLNQALIKDKRTENLYILPA--SQTRDKDALTREGVAKVLDDLKAMDFEFIVCDS 121 +G + K ++LP + + L + + L + + + ++ D Sbjct: 77 AEGLEPVLTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDL 136 Query: 122 PAGIETGALMALYFAD--EAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLL 179 P G L + A ++ + P+ + ++ + + + E + + Sbjct: 137 PPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVC 196 Query: 180 LT 181 Sbjct: 197 PN 198 >4JMP-A nrPDB Length = 269 Score = 114 bits (284), Expect = 5e-26, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 7/171 (4%) Query: 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFV 61 + IV+TS G GK+T +A +A AQ G KT+++D D+ I + + Sbjct: 80 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNN---EGL 136 Query: 62 NVIQGDATLNQALIKDKRTENLYILPAS--QTRDKDALTREGVAKVLDDLKAMDFEFIVC 119 + + + + Q I E+L +L + + +T A + D L M++ F++ Sbjct: 137 SSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVII 195 Query: 120 DSPA-GIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAEN 169 D+P T A + F + N E ++ + + ++ + + Sbjct: 196 DTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLG 246 >4JLV-A nrPDB Length = 269 Score = 94.5 bits (233), Expect = 4e-20, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 6/171 (3%) Query: 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFV 61 + ++VTS K G GK+T + +A AQ G KT+VID D+ + I + Sbjct: 82 VKRLLVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMRKPTQNYIFNEQNN--NGLS 139 Query: 62 NVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVA-KVLDDLKAMDFEFIVCD 120 ++I G T+++A I ENL +L A + K L DL ++ I+ D Sbjct: 140 SLIIGRTTMSEA-ITSTEIENLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVD 198 Query: 121 SPA-GIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENG 170 +P T A + ++++ + E + + + L K+ G Sbjct: 199 TPPVNTVTDAQLYARAIKDSLLVIDNEKNDKNEVKK-AKALMEKAGSNILG 248 >1G21-E nrPDB Length = 289 Score = 69.9 bits (169), Expect = 1e-12, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 17/255 (6%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIM-GCERRVVYD 59 MA GKGG+GK+T++ + LA+ GKK +++ D + LI+ + + + Sbjct: 1 MAMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIME 60 Query: 60 FVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLK-----AMDF 114 L + + + + GV ++ L+ D Sbjct: 61 MAAEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDL 120 Query: 115 EFIVCDSPAGIETGALMALYF--ADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEE 172 +F+ D + G M + A E I + E+ ++ ++ I + + N Sbjct: 121 DFVFYDVGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIV----KYANSGS 176 Query: 173 PIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-LDI 231 L+ N R + + L +++ +P D V RA + VI D Sbjct: 177 VRLGGLICNSRNTDREDEL----IIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDP 232 Query: 232 NADAGKAYADTVERL 246 A Y ++ Sbjct: 233 KAKQADEYRALARKV 247 >6Q93-A nrPDB Length = 290 Score = 64.9 bits (156), Expect = 4e-11, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 87/256 (33%), Gaps = 18/256 (7%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIM-GCERRVVYD 59 MA GKGG+GK+T++ + LA+ GKK +++ D + LI+ + V + Sbjct: 1 MALRQCAIYGKGGIGKSTTTQNLVAALAEAGKKVMIVGCDPKADSTRLILHSKAQGTVME 60 Query: 60 FVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLK-----AMDF 114 L + + + + GV ++ L+ + D Sbjct: 61 MAASAGSVEDLELEDVLQIGFGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYSDDL 120 Query: 115 EFIVCD-SPAGIETGALMALYF--ADEAIITTNPEVSSVRDSDRILGILASKSRRAENGE 171 +F+ D + G M + A E I + E+ ++ ++ I + + Sbjct: 121 DFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNIAKGIVKYAH----SG 176 Query: 172 EPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-LD 230 L+ R M + + +++ +P D V A + VI D Sbjct: 177 SVRLGGLICNSRKTDREDELIM----ALAAKIGTQMIHFVPRDNVVQHAEIRRMTVIEYD 232 Query: 231 INADAGKAYADTVERL 246 A Y ++ Sbjct: 233 PKAGQADEYRALARKI 248 >1CP2-A nrPDB Length = 269 Score = 60.2 bits (144), Expect = 8e-10, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 92/253 (36%), Gaps = 24/253 (9%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGD-A 68 GKGG+GK+T++ + +GL GK +V+ D + L++G ++ ++ + Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLG--GLAQKSVLDTLREEGE 65 Query: 69 TLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLK-----AMDFEFIVCD-SP 122 + I + + + + G+ ++ L+ D +++ D Sbjct: 66 DVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLG 125 Query: 123 AGIETGALMALYF--ADEAIITTNPEVSSVRDSDRILGILAS--KSRRAENGEEPIKEHL 178 + G M + A E I + E+ ++ ++ I + KS G Sbjct: 126 DVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRK 185 Query: 179 LLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRA-SNQGEPVILDINADAGK 237 + Y ++ + L +L+ +P V +A N+ + D + + Sbjct: 186 VANEYEL----------LDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPTCEQAE 235 Query: 238 AYADTVERLLGEE 250 Y + ++ E Sbjct: 236 EYRELARKVDANE 248 >3LA6-A nrPDB Length = 286 Score = 59.5 bits (142), Expect = 2e-09, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 ++++T +G T A +A ++Q K+ ++ID D+ ++G V + Sbjct: 94 VLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNN--VNGLSEI 151 Query: 64 IQGDATLNQALIKDKRTENLYILPAS--QTRDKDALTREGVAKVLDDLKAMDFEFIVCDS 121 + G + A K ++P + L E A++++ + +++ ++ D+ Sbjct: 152 LIGQGDITTAA-KPTSIAKFDLIPRGQVPPNPSELLMSERFAELVN-WASKNYDLVLIDT 209 Query: 122 PA 123 P Sbjct: 210 PP 211 >3CIO-A nrPDB Length = 299 Score = 57.9 bits (138), Expect = 5e-09, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 I+++T GKT S+ +A +AQ +K + ID D+ + + Sbjct: 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE--HGLSEY 163 Query: 64 IQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPA 123 + G LN+ + + I + L + L + ++ ++ D+P Sbjct: 164 LAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPP 223 >1IHU-A nrPDB Length = 589 Score = 52.5 bits (124), Expect = 2e-07, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 24/231 (10%) Query: 9 SGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDA 68 +GKGGVGKT+ S A A LA++GK+ +++ D N+ + + + G + Sbjct: 14 TGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTIQAIASVPGLS 72 Query: 69 TLN--------------QALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAM-- 112 L IK +++ Q + L Sbjct: 73 ALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASL 132 Query: 113 --DFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENG 170 F+ I+ D+ T L+ L A + I +NPE +S L + A Sbjct: 133 LTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEA 192 Query: 171 EEPIKEH--LLLTRYNPGRVSRGDMLSMEDVLEILRIKLV---GVIPEDQS 216 K +L+ R + +E L+ + + GV+P+ ++ Sbjct: 193 LSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEA 243 Score = 44.4 bits (103), Expect = 5e-05, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 75/241 (31%), Gaps = 36/241 (14%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 +++ GKGGVGKTT +AAIA LA G + D L M + V+ I Sbjct: 329 LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSMTLNGSLNNLQVSRI 385 Query: 65 QGDATLNQALIKDKRTENLYILPASQTRDKDAL------TREGVAKVLDDLKAMDFEFIV 118 + T+ + A + ++ L ++ F+V Sbjct: 386 DPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVV 445 Query: 119 CDSPA-------------------------GIETGALMALYFAD--EAIITTNPEVSSVR 151 D+ G T +M L + + ++ T PE + V Sbjct: 446 MDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVL 505 Query: 152 DSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVI 211 ++ + L + TR R+ L + ++ V ++ Sbjct: 506 EAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHASRVALV 565 Query: 212 P 212 P Sbjct: 566 P 566 >3FWY-A nrPDB Length = 314 Score = 52.2 bits (123), Expect = 3e-07, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 14/228 (6%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFV-NVIQGDA 68 GKGG+GK+T+S+ ++ + GK+ + I D + + G V D + +V Sbjct: 55 GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPE 114 Query: 69 TLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLK----AMDFEFIVCD-SPA 123 L + + + A V + + LK D + ++ D Sbjct: 115 ELRPEDFVFEGFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGD 174 Query: 124 GIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKS-----RRAENGEEPIKEHL 178 + G L AD+A++ T + S+ +RI+ + +KS R A + Sbjct: 175 VVCGGFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD 234 Query: 179 LLTRYNPGRV-SRGDMLSMEDVL--EILRIKLVGVIPEDQSVLRASNQ 223 + R+ R + D + L+ K + + EDQ VL A + Sbjct: 235 EVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMDEDQDVLAARAE 282 >3EZ6-A nrPDB Length = 398 Score = 50.6 bits (119), Expect = 8e-07, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 29/189 (15%) Query: 2 ARIIVVTSGKGGVGKTTSSAAIA------TGLAQKGKKTVVIDFDIGLR-----NLDLIM 50 A +I +++ KGGV KT S+ ++A L + + +VID D + + Sbjct: 108 AYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSI 167 Query: 51 GCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQT-----RDKDAL-------- 97 G + L + I + ++PAS D L Sbjct: 168 GIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQ 227 Query: 98 -TREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEV----SSVRD 152 + + + D D++FI+ DS ++ AL A+ P SS++ Sbjct: 228 NIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPLPPATVDFHSSLKY 287 Query: 153 SDRILGILA 161 R+ ++ Sbjct: 288 VARLPELVK 296 >2YNM-A nrPDB Length = 301 Score = 49.8 bits (117), Expect = 1e-06, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 6/168 (3%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI-GLRNLDLIMGCERRVVYDFVN 62 +++ GKGG+GK+T+S+ ++ ++ GKK + I D L V+ Sbjct: 35 LVIAVYGKGGIGKSTTSSNLSAAFSKLGKKVLQIGCDPKHDSTFTLTHKMVPTVIDILEE 94 Query: 63 VIQGDATLNQALIKDKRTENLYILPASQTRDKDA----LTREGVAKVLDDLKAMDFEFIV 118 V L + + + + +T + V + + D + ++ Sbjct: 95 VDFHSEELRPQDFMFEGFNGVQCVESGGPPAGTGCGGYVTGQTVKLLKEHHLLEDTDVVI 154 Query: 119 CD-SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSR 165 D + G L A+ +I T + S+ +RI+ + +K++ Sbjct: 155 FDVLGDVVCGGFAAPLQHANYCLIVTANDFDSIFAMNRIVAAINAKAK 202 >1ZU4-A nrPDB Length = 320 Score = 47.9 bits (112), Expect = 4e-06, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 73/209 (34%), Gaps = 29/209 (13%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 I + G G GKTTS A +A A+ G K ++ D I Sbjct: 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD----------TFRAGATQQLEEWI 156 Query: 65 QGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAG 124 + L+K + D ++ + + K K +++ ++ D+ Sbjct: 157 KTRLNNKVDLVKANKLN----------ADPASVVFDAIKKA----KEQNYDLLLIDTAGR 202 Query: 125 IETGALMALYFADEA-IITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHL--LLT 181 ++ + ++ I E S+ + ++ ++ + E + ++ Sbjct: 203 LQNKT-NLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIIL 261 Query: 182 RYNPGRVSRGDMLSMEDVLEILRIKLVGV 210 G L+++++L I IK++GV Sbjct: 262 TKMDSTSKGGIGLAIKELLNI-PIKMIGV 289 >3FKQ-A nrPDB Length = 373 Score = 46.0 bits (107), Expect = 2e-05, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 +++ TS GGVG +T +AA A A GKK ++ + + D + Sbjct: 145 VVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYS 204 Query: 64 IQGD----ATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAM-DFEFIV 118 ++ ++ IK + Y D ++ + ++ +++ M +++ I+ Sbjct: 205 LKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEII 264 Query: 119 CDSPAGIETGALMALYFADEAIIT 142 D P +E L L A I+ Sbjct: 265 VDLPFSLEIEKLKLLSKAWRIIVV 288 >5ZME-A nrPDB Length = 687 Score = 45.6 bits (106), Expect = 2e-05, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 4/117 (3%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVN 62 R ++ SGKGGVGKT+ SA++A LA G T+V+ D D + V Sbjct: 12 RKYIMISGKGGVGKTSLSASLAVKLAAAGHTTLVVSTDPAHSLSD---SLAQDVSGGRPV 68 Query: 63 VIQG-DATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIV 118 ++QG D L I + + + + +D +A ++V D + M F++ Sbjct: 69 LLQGTDLPLWGLEIDPEEAKREFFEGSGAGQDGEAGGPSAASQVSDFMNRMGMGFVI 125 Score = 27.9 bits (60), Expect = 5.1, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 10/137 (7%) Query: 17 TTSSAAIATGLAQKGKKTVVIDFDIGLR-----NLDLIMGCERRVVYDFVNVIQGDATLN 71 T+ S+++A A G T+V+ D + DL G ++ + + L Sbjct: 370 TSCSSSLAVHFANDGLPTLVVSTDPAHSLSDAFDQDLSGGSPVKITSPLGDELPL-WGLQ 428 Query: 72 QALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALM 131 + K + + + L G+ + D LK + ++ P G++ Sbjct: 429 LDPEQAKAELRAVLADDGGKKLNETLDGLGLGVISDQLKDLQLGELLDTPPPGVDE---- 484 Query: 132 ALYFADEAIITTNPEVS 148 A+ A PE S Sbjct: 485 AIAIAKVVQFLKAPEYS 501 >2YVU-A nrPDB Length = 186 Score = 41.4 bits (95), Expect = 4e-04, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 9/131 (6%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 I+V +G G GKTT + +A L ++G + V+D D + G R + Sbjct: 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKR 73 Query: 64 IQ--GDATLNQALIKDKRTENLYILPASQTRD--KDALTREGVAKVLDDLKAMDFEFIVC 119 I +I ++ P Q R+ + + EG+ L+ E ++ Sbjct: 74 IAWIARLLARNGVI----VICSFVSPYKQARNMVRRIVEEEGIP-FLEIYVKASLEEVIR 128 Query: 120 DSPAGIETGAL 130 P G+ AL Sbjct: 129 RDPKGLYKKAL 139 >1YR7-A nrPDB Length = 262 Score = 40.6 bits (93), Expect = 7e-04, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 20/129 (15%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 MA +IVV G G GKTT + L K ++ D G++ L + R Sbjct: 12 MASMIVVFVGTAGSGKTTLTGEFGRYLED-NYKVAYVNLDTGVKELPYEPSIDVREFVTV 70 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDF--EFIV 118 +++ N A+++ E + L+ + ++ ++++ Sbjct: 71 EEIMREGYGPNGAIVESYDR-----------------LMEKFNEYLNKILRLEKENDYVL 113 Query: 119 CDSPAGIET 127 D+P +ET Sbjct: 114 IDTPGQMET 122 >2GKS-A nrPDB Length = 546 Score = 39.1 bits (89), Expect = 0.002, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 25/47 (53%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCER 54 +G GK+T + +AT L +G+K ++D D+ +L +G + Sbjct: 377 LTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSK 423 >5L3R-A nrPDB Length = 301 Score = 39.1 bits (89), Expect = 0.002, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR---NLDLIMGCERRVVYDF 60 +++ +G GVGKTT A +A L ++GK ++I D+ + +I+G + V Sbjct: 107 TVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYT 166 Query: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFE--FIV 118 A + + +K+ + N+ ++ T + + + + ++ D K ++ +V Sbjct: 167 AGTDVKPADIAKQGLKEAKKNNVDVVI-MDTAGRLQIDKGMMDELKDVKKFLNPTEVLLV 225 Query: 119 CDSPAGIETGAL 130 D+ G E AL Sbjct: 226 VDAMTGQEAAAL 237 >3UG7-A nrPDB Length = 349 Score = 39.1 bits (89), Expect = 0.002, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 91/264 (34%), Gaps = 23/264 (8%) Query: 19 SSAAIATGLAQKGKKTVVIDFDIGLRNLDLI---MGCERRVVYDFVNVIQGDATLNQAL- 74 SAA LA+KG K V++ D D+ G E V + N+ + +A+ Sbjct: 42 MSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAME 101 Query: 75 -----IKDKRTENLYILPASQTR------DKDALTREGVAKVLDDLKAMDFEFIVCDSPA 123 +K + EN ++ + + L + + +F+ ++ D+ Sbjct: 102 EYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAP 161 Query: 124 GIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 T + + + +T ++ +R + K +E I +L Sbjct: 162 TGHTLRFLGMPEVMDKYMT---KLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEEL 218 Query: 184 NPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTV 243 + ++ E +LV VIPE+ S+L S + + Sbjct: 219 EKMKERIVRARNILSDPERTAFRLV-VIPEEMSILE-SERAMKALQKYGIPIDAVIV--- 273 Query: 244 ERLLGEERPFRFIEEEKKGFLKRL 267 +L+ E+ F ++ LKRL Sbjct: 274 NQLIPEDVQCDFCRARRELQLKRL 297 >5CB6-A nrPDB Length = 197 Score = 38.3 bits (87), Expect = 0.004, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCER 54 +G G GKTT + A+ L G + V+D D+ NL +G + Sbjct: 30 LTGLSGAGKTTITHALEKKLRDSGYRLEVLDGDVVRTNLTKGLGFSK 76 >5L3S-A nrPDB Length = 298 Score = 37.5 bits (85), Expect = 0.006, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 8/127 (6%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNL-DLIMGCERRVVYDFVNV 63 I++ G G GKTT++ +A ++G K ++ D+ D ++ ++ Sbjct: 104 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGE 163 Query: 64 IQGDATLN------QALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFI 117 + +K+K + ++ E + ++ D LK D + Sbjct: 164 PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDV-IL 222 Query: 118 VCDSPAG 124 V D+ G Sbjct: 223 VIDASIG 229 >1QZX-A nrPDB Length = 440 Score = 37.5 bits (85), Expect = 0.006, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 8/127 (6%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNL-DLIMGCERRVVYDFVNV 63 I++ G G GKTT++ +A ++G K ++ D+ D ++ ++ Sbjct: 106 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGE 165 Query: 64 IQGDATLN------QALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFI 117 + +K+K + ++ E + ++ D LK D + Sbjct: 166 PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDV-IL 224 Query: 118 VCDSPAG 124 V D+ G Sbjct: 225 VIDASIG 231 >3MD0-A nrPDB Length = 355 Score = 37.1 bits (84), Expect = 0.008, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 20/142 (14%) Query: 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFV 61 A + +T G GVGK+T+ A+ L ++G + V + + Sbjct: 79 AHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAV-------------LAVDPSSTRTGG 124 Query: 62 NVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDS 121 +++ + + + N YI P+ + +TR + + L+A F+ I+ ++ Sbjct: 125 SILGDKTRMARLAVHP----NAYIRPSPTSGTLGGVTRAT-RETVVLLEAAGFDVILIET 179 Query: 122 PAGIETGALMALYFADEAIITT 143 G+ + D ++ T Sbjct: 180 -VGVGQSEVAVANMVDTFVLLT 200 >2IY3-A nrPDB Length = 432 Score = 36.7 bits (83), Expect = 0.009, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 10/212 (4%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVV-YDFVNVIQGDA 68 G G GKTT++A +A KG++ +++ D + V + V+ G++ Sbjct: 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGES 164 Query: 69 TLN----QALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAG 124 + +L ++ + D +A++ + L + +V D A Sbjct: 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEV-LLVLD--AM 221 Query: 125 IETGALMALYFADEAIITTNPEVSSVR-DSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 AL DE + T ++ + D+ + A + E Sbjct: 222 TGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEP 281 Query: 184 NPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQ 215 G +L M D+ IL K+ G+ D+ Sbjct: 282 FYPERLAGRILGMGDIESILE-KVKGLEEYDK 312 >3ZQ6-A nrPDB Length = 324 Score = 36.0 bits (81), Expect = 0.016, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 96/271 (35%), Gaps = 40/271 (14%) Query: 19 SSAAIATGLAQKGKKTVVIDFDIGLR---NLDLIMGCERRVVYDFVNVIQGDATLNQALI 75 SAA A +A+ GKKT+VI D +L+ +G + + + ++ D + Sbjct: 30 ISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEY 89 Query: 76 KDKRTENLYILPASQ----------TRDKDALT-REGVAKVLDDLKAMDFEFIVCDS-PA 123 + K E + P + + L + +++ ++ D+ P Sbjct: 90 QAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPT 149 Query: 124 GIETGALMA---LYFADEAIITTNPEVSSVRDSDR----ILGILASKSRRAENGEEPIKE 176 G L + +I ++ S+ + + +G + R ++ E K Sbjct: 150 GHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKK- 208 Query: 177 HLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAG 236 + N R D E K+V VIPE+ S+ + E + + + Sbjct: 209 -----QINAAREVMSDP-------ERTSFKMV-VIPEEMSIYES----ERAMKALEKYSI 251 Query: 237 KAYADTVERLLGEERPFRFIEEEKKGFLKRL 267 A V ++L EE F +K +RL Sbjct: 252 HADGVIVNQVLPEESDCEFCNARRKLQQERL 282 >2FFH-A nrPDB Length = 425 Score = 35.2 bits (79), Expect = 0.027, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 8/139 (5%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVV-YDFVNVIQGDA 68 G G GKTT++A +A KG++ +++ D + V + V+ G++ Sbjct: 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGES 164 Query: 69 TLN----QALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAG 124 + +L ++ + D +A++ + L + +V D A Sbjct: 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEV-LLVLD--AM 221 Query: 125 IETGALMALYFADEAIITT 143 AL DE + T Sbjct: 222 TGQEALSVARAFDEKVGVT 240 >1J8M-F nrPDB Length = 297 Score = 35.2 bits (79), Expect = 0.028, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR 44 +++ G G GKTT++ +A +KG K ++ D+ Sbjct: 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 >3C8U-A nrPDB Length = 208 Score = 35.2 bits (79), Expect = 0.032, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 18/129 (13%) Query: 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD-IGLRN---LDLIM----GCE 53 R +V SG G GK+T S +A L+ +G V+ D L N + G Sbjct: 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAP 80 Query: 54 RRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMD 113 ++ + + +I I A + ++ Sbjct: 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPEC----------RVAIIE 130 Query: 114 FEFIVCDSP 122 +++ D+P Sbjct: 131 GNYLLFDAP 139 >3CR8-A nrPDB Length = 552 Score = 35.2 bits (79), Expect = 0.033, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 9 SGKGGVGKTTSSAAIATGLAQKGKK-TVVIDFDIGLRNLDLIMGCERR 55 +G G GK+T + A+A L + G + ++D DI R+L +G + Sbjct: 375 TGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKA 422 >3DM5-A nrPDB Length = 443 Score = 34.8 bits (78), Expect = 0.035, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 I++ G G GKTT+ A +A ++G K V+ D + R+++ + Sbjct: 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQL---RQLLDRYHIE 157 Query: 64 IQGDATLNQALIKDKRTENLY 84 + G+ A+ K + + Sbjct: 158 VFGNPQEKDAIKLAKEGVDYF 178 >1RJ9-B nrPDB Length = 300 Score = 34.8 bits (78), Expect = 0.036, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 8/139 (5%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVV-YDFVNVIQGDA 68 G G GKTT++A +A KG++ +++ D + V + V+ G++ Sbjct: 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGES 164 Query: 69 TLN----QALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAG 124 + +L ++ + D +A++ + L + +V D A Sbjct: 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEV-LLVLD--AM 221 Query: 125 IETGALMALYFADEAIITT 143 AL DE + T Sbjct: 222 TGQEALSVARAFDEKVGVT 240 >4JYC-A nrPDB Length = 337 Score = 34.8 bits (78), Expect = 0.040, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 6/180 (3%) Query: 2 ARIIVV-TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI-GLRNLDLIMGCERRVVYD 59 R I V +G GVGK+T+ A+ + L G K V+ D R I+G + R+ Sbjct: 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARL 112 Query: 60 FVNVIQ-GDATLNQALIKD--KRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEF 116 ++ + + + +T +L + D + GV + + + +F Sbjct: 113 AIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLT-DF 171 Query: 117 IVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKE 176 + G E + D +R AS+ R A + P Sbjct: 172 FLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSA 231 >3NXS-A nrPDB Length = 329 Score = 34.8 bits (78), Expect = 0.041, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 19/136 (13%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGD 67 +G GVGK+T+ A+ L + G + V + + +++ Sbjct: 62 ITGVPGVGKSTTIEALGMHLIEAGHRVAV-------------LAVDPSSTRTGGSILGDK 108 Query: 68 ATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET 127 + + + + YI P+ + + + + + L+A ++ I+ ++ G+ Sbjct: 109 TRMARLAVHP----DAYIRPSPTSGTLGGVAKAT-RETIVLLEAAGYDVILVET-VGVGQ 162 Query: 128 GALMALYFADEAIITT 143 + D + T Sbjct: 163 SEVTVAGMVDTFVFLT 178 >3A4L-A nrPDB Length = 260 Score = 34.8 bits (78), Expect = 0.041, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDL 48 ++++ +G GVGK+T S +A L++ +V+ D+ + + Sbjct: 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV 49 >6BS4-A nrPDB Length = 340 Score = 34.4 bits (77), Expect = 0.056, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 26/142 (18%) Query: 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYD------- 59 + +GKGG GK+T +AA+A LA G+K ++++ + G + + + + Sbjct: 25 LVTGKGGTGKSTIAAALALTLAAGGRKVLLVEVE-GRQGIAQLFDVPPLPYQELKIATAE 83 Query: 60 ---------------FVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAK 104 F+ + L A +R + +D L + + Sbjct: 84 RGGQVNALAIDIEAAFLEYLDMFYNLGIAGRAMRRIGAVEFATTIAPGLRDVLLTGKIKE 143 Query: 105 V---LDDLKAMDFEFIVCDSPA 123 LD K ++ IV D+P Sbjct: 144 TVVRLDKNKLPVYDAIVVDAPP 165 >5L3Q-B nrPDB Length = 638 Score = 34.0 bits (76), Expect = 0.062, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 17/154 (11%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 +V G GVGK+T+ A I+ L + G ++ D + R + Sbjct: 420 VVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH--- 476 Query: 65 QGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAG 124 + + + + +D + E +A + F+ ++ D+ Sbjct: 477 ----PPEKHGGRTM----VQLFEKGYGKDAAGIAMEAIAFA----RNQGFDVVLVDTAGR 524 Query: 125 IETGALMALYFADEAIITTNPEVSSVRDSDRILG 158 ++ A + A +IT N + + ++G Sbjct: 525 MQDNAPLMTALAK--LITVNTPDLVLFVGEALVG 556 >4ZIR-B nrPDB Length = 268 Score = 34.0 bits (76), Expect = 0.066, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 60/179 (33%), Gaps = 29/179 (16%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 I V GK G GKTT +A LA G+ + +D G ++ V+ + Sbjct: 39 IYVVVGKNGSGKTTLLKILAGLLAAAGE--IFLD---GSPADPFLLRKNVGYVFQNPSSQ 93 Query: 65 QGDATLNQALIKDKRTENLY-------------ILPASQTRDKDALTREGVAK---VLDD 108 AT+ + + L ++ S D L G K + Sbjct: 94 IIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIAS 153 Query: 109 LKAMDFEFIVCDSPAGIET--------GALMALYFADEAIITTNPEVSSVRDSDRILGI 159 + A D F+ D P + L +L + II E+ + D D IL I Sbjct: 154 MLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHI 212 >6CUM-A nrPDB Length = 315 Score = 34.0 bits (76), Expect = 0.072, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 22/144 (15%) Query: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVN 62 R+I VT G G GK+T+ A+ ++G + V+ D Sbjct: 69 RVIGVT-GPPGAGKSTTVGAMVGAYRERGLRVAVLAVDPSSP------------------ 109 Query: 63 VIQGDATLNQALIKDKRTENLYILPASQTRDKD-ALTREGVAKVLDDLKAMDFEFIVCDS 121 G A L + + +L S V + L A+ ++ IV ++ Sbjct: 110 -YSGGALLGDRIRMAAHINDPDVLIRSMAARGHLGGLAAAVPAAIRLLAALSYDLIVLET 168 Query: 122 PAGIETGALMALYFADEAIITTNP 145 G+ + AD ++ NP Sbjct: 169 -VGVGQSEIEIAAIADPTVVILNP 191 >3UIE-A nrPDB Length = 200 Score = 33.7 bits (75), Expect = 0.083, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD--IGLRNLDLIMGCERR 55 +G G GK+T + A+ L QKGK ++D D N DL E R Sbjct: 30 VTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDR 79 >3TK1-A nrPDB Length = 330 Score = 33.7 bits (75), Expect = 0.083, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 19/136 (13%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGD 67 +G GVGK+TS A+ L ++G + V + + V +++ Sbjct: 61 ITGVPGVGKSTSIEALGMHLIEQGHRVAV-------------LAVDPSSVRSGGSILGDK 107 Query: 68 ATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET 127 + + + + Y+ P+ + + + + + L+A F+ ++ ++ G+ Sbjct: 108 TRMARLAVHP----DAYVRPSPSSGTLGGVAKAT-RETIVLLEAAGFDVVLVET-VGVGQ 161 Query: 128 GALMALYFADEAIITT 143 + D + T Sbjct: 162 SEVTVADMVDTFVFLT 177 >6EJ5-A nrPDB Length = 637 Score = 33.7 bits (75), Expect = 0.096, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 27/168 (16%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 + R + + G G GKT +SA I LA++G V++ + + ++ Sbjct: 206 LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA----PSNIAVDQLTEKIHQTG 261 Query: 61 VNVIQGDATLNQA-------LIKDKRTENLYILPASQTRDK-----------DALTREGV 102 + V++ A +A L + N+ +P Q + D + Sbjct: 262 LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL 321 Query: 103 AKVLDDLKAMDFEFIVCDSPAGIETGALMALYF----ADEAIITTNPE 146 + + M+ + I C G L + F DE+ T PE Sbjct: 322 KRTAERELLMNADVICCTC-VGAGDPRLAKMQFRSILIDESTQATEPE 368 >2WJV-A nrPDB Length = 800 Score = 33.7 bits (75), Expect = 0.096, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 27/168 (16%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60 + R + + G G GKT +SA I LA++G V++ + + ++ Sbjct: 369 LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA----PSNIAVDQLTEKIHQTG 424 Query: 61 VNVIQGDATLNQA-------LIKDKRTENLYILPASQTRDK-----------DALTREGV 102 + V++ A +A L + N+ +P Q + D + Sbjct: 425 LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL 484 Query: 103 AKVLDDLKAMDFEFIVCDSPAGIETGALMALYF----ADEAIITTNPE 146 + + M+ + I C G L + F DE+ T PE Sbjct: 485 KRTAERELLMNADVICCTC-VGAGDPRLAKMQFRSILIDESTQATEPE 531 >1FP7-A nrPDB Length = 557 Score = 32.9 bits (73), Expect = 0.14, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 + +T G GKTT+S + LA+ GK+ +V Sbjct: 62 VTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 >3J8G-X nrPDB Length = 490 Score = 32.9 bits (73), Expect = 0.15, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 40/144 (27%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDAT 69 G+ VGK+T + + I+G ER VVYD + Sbjct: 209 GRPNVGKSTLT--------------------------NRILGEERVVVYDMPGTTR---- 238 Query: 70 LNQALIKDKRTENLYILPASQTRDK-----DALTREGVAKVLDDLKAMDFEFIVCDSPAG 124 + I +R Y+L + K DA+ + V K L ++ + +V D+ G Sbjct: 239 -DSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 125 IETGALM----ALYFADEAIITTN 144 I L L +I N Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVN 321 >6NRP-A nrPDB Length = 263 Score = 32.9 bits (73), Expect = 0.16, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 34/225 (15%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIM----GCERRV 56 M R I+VT G+GK AIA LA+ G + + ++ + Sbjct: 23 MTRRILVTGSSRGIGK-----AIALQLAKAGFDVT-VHARSRQAEAEQVVQEIQALGQNS 76 Query: 57 VYDFVNVIQGDATLNQALIKDKRTENLY---ILPASQTRDK--DALTREGVAKVLDDLKA 111 Y +V + T+ Q L +D + +L A T D ALT + +V+ Sbjct: 77 HYLMFDVNE-RQTVQQILEQDVEQHGGFYGVVLNAGLTHDGAFPALTDQDWDEVISTSLD 135 Query: 112 MDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRA---- 167 + + + + ++ I T VS + + + A+K+ Sbjct: 136 GFYNVL--------KPLIMPMIHLRKGGRIVTLSSVSGIMGNRGQVNYSAAKAGLIGATK 187 Query: 168 ENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIP 212 E K + + PG ++ E V + ++ + +IP Sbjct: 188 ALALELAKRKITVNCVAPG------LIETEMVTDEVKEHALKMIP 226 >3D8N-A nrPDB Length = 286 Score = 32.5 bits (72), Expect = 0.21, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 1/94 (1%) Query: 151 RDSDRILGILASKSRRAENGEEPIKEHLLLTR-YNPGRVSRGDMLSMEDVLEILRIKLVG 209 + +L + + E P+ + L R R + L V + L+ Sbjct: 91 TTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLP 150 Query: 210 VIPEDQSVLRASNQGEPVILDINADAGKAYADTV 243 ++P+ + V G+P+ L NA A + Y Sbjct: 151 LLPQGRGVAALQLYGKPLPLLENALAERGYRVLP 184 >2P67-A nrPDB Length = 341 Score = 32.1 bits (71), Expect = 0.26, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 19/133 (14%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGD 67 +G G GK+T A L ++G K VI D + + G ++ + + Sbjct: 61 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD---PSSPVTGGSILGDKTRMNDLARAE 117 Query: 68 ATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET 127 A A I+ + ++ ASQ +++ +A ++ ++ ++ G+ Sbjct: 118 A----AFIRPVPSSG-HLGGASQRA----------RELMLLCEAAGYDVVIVET-VGVGQ 161 Query: 128 GALMALYFADEAI 140 D I Sbjct: 162 SETEVARMVDCFI 174 >3IBG-A nrPDB Length = 348 Score = 31.7 bits (70), Expect = 0.32, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 16/137 (11%) Query: 20 SAAIATGLAQKGKKTVVIDFDIGLRNLDLI---MGCERRVVYDFVNVIQGDATLN---QA 73 S ++A LA+ K ++I D D G E R+V + N+ + N Q Sbjct: 43 SCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDGYSNLSAMEIDPNGSIQD 102 Query: 74 LIKDKRTENLYILPASQTRDK--------DALTREG-VAKVLDDLKAMDFEFIVCDS-PA 123 L+ ++ L + + A+VL +K++ +E IV D+ P Sbjct: 103 LLASGDSQGDDPLAGLGMGNMMQDLAFSIPGVDEAMSFAEVLKQVKSLSYEVIVFDTAPT 162 Query: 124 GIETGALMALYFADEAI 140 G L ++A+ Sbjct: 163 GHTLRFLQFPTVLEKAL 179 >2FGK-A nrPDB Length = 247 Score = 31.7 bits (70), Expect = 0.34, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 20/193 (10%) Query: 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFV 61 +I + G+ G GK+T + I + + ++ D+ L + +++ Sbjct: 35 GEVIGIV-GRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD------------PNWL 81 Query: 62 NVIQGDATLNQALIKDKRTENLYILPASQTRDKD--ALTREGVAKVLDDLKAMDFEFIVC 119 G + L+ +N+ + + +K A G + +L+ + IV Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR-EGYNTIVG 140 Query: 120 DSPAGIETGALMALYFADEAI----ITTNPEVSSVRDSDRILGILASKSRRAENGEEPIK 175 + AG+ G + A + I + +S D + I+ + + + I Sbjct: 141 EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIII 200 Query: 176 EHLLLTRYNPGRV 188 H L T N R+ Sbjct: 201 AHRLSTVKNADRI 213 >4CVN-A nrPDB Length = 191 Score = 31.4 bits (69), Expect = 0.42, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 23/177 (12%) Query: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKK-TVVIDFDIGLRNLDLIMGCERRVVYD 59 M +I +T G GVGKTT + +A + G + + DF + + G + + Sbjct: 10 MGMLIAIT-GTPGVGKTTIAKLLA---EKLGYEYVNLRDFALEKGCGREVDGEVEVEIDE 65 Query: 60 FVNVIQGDAT-----LNQALIKDKRTENLYILPASQTRDKDALTREGVA--KVLDDLKAM 112 ++ + L+ L + + +L A + L G + K+ ++++A Sbjct: 66 LAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAE 125 Query: 113 DFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAEN 169 + I+ + A+ + I + + I+G++ S +R Sbjct: 126 LVDAILIE-----------AIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVG 171 >6QEL-G nrPDB Length = 245 Score = 31.4 bits (69), Expect = 0.45, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 + SGK G GK +AAI L +GK ++I Sbjct: 103 IFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 >4AK9-A nrPDB Length = 318 Score = 31.4 bits (69), Expect = 0.48, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 27/117 (23%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64 +++ G G GKTT+ +A ++G K ++ D Sbjct: 118 VLMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAG----------------- 160 Query: 65 QGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDS 121 Q + +RT + ++ A+ + V + +++ DF+ ++CD+ Sbjct: 161 ------EQLEVWAQRTGSEIVMAEGPKPRPAAVLSQAVRRAVEE----DFDVVLCDT 207 >2WOO-A nrPDB Length = 329 Score = 31.4 bits (69), Expect = 0.48, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 46/133 (34%), Gaps = 12/133 (9%) Query: 20 SAAIATGLAQKGKKTVVIDFDIG-----------LRNLDLIMGCERRVVYDFVNVIQGDA 68 S ++A +++ ++I D ++ + G + + + Sbjct: 36 SCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQE 95 Query: 69 TLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDS-PAGIET 127 QA ++ ++ A++L +K+M+F+ ++ D+ P G Sbjct: 96 MTEQADQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTL 155 Query: 128 GALMALYFADEAI 140 L ++A+ Sbjct: 156 RFLNFPTVLEKAL 168 >2WWW-A nrPDB Length = 349 Score = 31.4 bits (69), Expect = 0.48, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 19/138 (13%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGD 67 SG G GK+T L ++G K V+ D + ++ + + Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTEL------- 131 Query: 68 ATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET 127 R N YI P+ TR + + + ++ I+ ++ G+ Sbjct: 132 ----------SRDMNAYIRPS-PTRGTLGGVTRTTNEAILLCEGAGYDIILIET-VGVGQ 179 Query: 128 GALMALYFADEAIITTNP 145 D ++ P Sbjct: 180 SEFAVADMVDMFVLLLPP 197 >5A5G-A nrPDB Length = 558 Score = 31.0 bits (68), Expect = 0.52, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGC 52 +T G GKTT++ A L + GKKT+V + +L + G Sbjct: 57 TTAITPTPAGEGKTTTTIGAADALTRLGKKTIV---ALREPSLGPVFGI 102 >6CS8-A nrPDB Length = 303 Score = 31.0 bits (68), Expect = 0.54, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 +++ G GVGKTT+ +A Q+GK ++ D Sbjct: 101 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 136 >3HJ6-A nrPDB Length = 327 Score = 31.0 bits (68), Expect = 0.55, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 13/76 (17%) Query: 21 AAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDK-- 78 A IA L++ GKK +I +G + Y ++V++G+ + + +DK Sbjct: 58 ANIAVNLSRLGKKVALISR----------LGADAFGNY-LLDVLKGEQIITDGIQQDKER 106 Query: 79 RTENLYILPASQTRDK 94 RT +Y+ +++T D Sbjct: 107 RTTIVYVSKSTRTPDW 122 >6BS5-B nrPDB Length = 394 Score = 31.0 bits (68), Expect = 0.60, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 22/151 (14%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 +VV G GGVGKTT++AA+A A+ G+ VV+ D R L +G Sbjct: 20 RVVVCCGAGGVGKTTTAAALALRAAEYGRTVVVLTIDPAKR-LAQALGINDLGNTPQRVP 78 Query: 64 IQGDAT--LNQALIKDKRTENLYILPASQTRDKDAL-----------------TREGVAK 104 + + L+ ++ +RT + ++ S ++ + K Sbjct: 79 LAPEVPGELHAMMLDMRRTFDEMVMQYSGPERAQSILDNQFYQTVATSLAGTQEYMAMEK 138 Query: 105 VLDDLKAMDFEFIVCDSPAGIETGALMALYF 135 + L ++ IV D+P AL L Sbjct: 139 LGQLLSQDRWDLIVVDTPP--SRNALDFLDA 167 >3IQW-A nrPDB Length = 334 Score = 31.0 bits (68), Expect = 0.60, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 13/134 (9%) Query: 20 SAAIATGLAQKGKKTVVIDFDIGLRNLDLI---MGCERRVVYDFVNVIQGDATLN---QA 73 S ++A LA+ + +++ D D G E R+V F N+ + N Q Sbjct: 33 SCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQD 92 Query: 74 LIKDKRTENLYILPASQTRDK-----DALTREG-VAKVLDDLKAMDFEFIVCDS-PAGIE 126 L+ + + + + A+VL + ++ +E IV D+ P G Sbjct: 93 LLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHT 152 Query: 127 TGALMALYFADEAI 140 L ++A+ Sbjct: 153 LRFLQFPTVLEKAL 166 >5GAD-l nrPDB Length = 497 Score = 30.6 bits (67), Expect = 0.69, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 +++ G GVGKTT+ +A Q+GK ++ D Sbjct: 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 >4BZX-A nrPDB Length = 173 Score = 30.2 bits (66), Expect = 0.98, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 10/114 (8%) Query: 9 SGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDA 68 +G G GK++ + + L +KG V+D D NL + + + + + + Sbjct: 10 TGLSGSGKSSVAMLVERKLLEKGISAYVLDGD----NLRHGLNAD--LGFSMADRAENLR 63 Query: 69 TLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSP 122 L+ +L ++PA +A+ + +DF + CD+P Sbjct: 64 RLSHVATLLADCGHLVLVPA----ISPLAEHRALARKVHADAGIDFFEVFCDTP 113 >2PEY-A nrPDB Length = 179 Score = 29.8 bits (65), Expect = 1.1, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 2/94 (2%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGD 67 +G G GKTT S A+ L G +D D + L+ +G + V I Sbjct: 10 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 69 Query: 68 ATLNQALIKDKRTENLYILPASQTRDKDALTREG 101 A L +I P +Q R+ EG Sbjct: 70 AKLFADA--GLVCITSFISPYTQDRNNARQIHEG 101 >2OFX-A nrPDB Length = 207 Score = 29.8 bits (65), Expect = 1.1, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 2/94 (2%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGD 67 +G G GKTT S A+ L G +D D + L+ +G + V I Sbjct: 37 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 96 Query: 68 ATLNQALIKDKRTENLYILPASQTRDKDALTREG 101 A L +I P +Q R+ EG Sbjct: 97 AKLFADA--GLVCITSFISPYTQDRNNARQIHEG 128 >1X6V-B nrPDB Length = 630 Score = 29.8 bits (65), Expect = 1.1, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 2/94 (2%) Query: 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGD 67 +G G GKTT S A+ L G +D D + L+ +G + V I Sbjct: 57 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 116 Query: 68 ATLNQALIKDKRTENLYILPASQTRDKDALTREG 101 A L +I P +Q R+ EG Sbjct: 117 AKLFADA--GLVCITSFISPYTQDRNNARQIHEG 148 >3JAJ-z nrPDB Length = 426 Score = 29.8 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 G G GKTT+ + +A +KG KT +I D Sbjct: 105 GLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 135 >3GP8-A nrPDB Length = 574 Score = 29.8 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 +VV +G G GK+T++ A+A G + + Sbjct: 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 >6FRK-x nrPDB Length = 504 Score = 29.8 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 G G GKTT+ + +A +KG KT +I D Sbjct: 108 GLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 >5L3Q-A nrPDB Length = 442 Score = 29.4 bits (64), Expect = 1.5, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 G G GKTT+ + +A +KG KT +I D Sbjct: 114 GLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 144 >3P4X-A nrPDB Length = 413 Score = 29.4 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 13 GVGKTTSSAAIATGLAQKGKKTVVI 37 GVGKTT A LA+KGKK+ ++ Sbjct: 45 GVGKTTFGMMTALWLARKGKKSALV 69 >3DO6-A nrPDB Length = 543 Score = 29.4 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 20/33 (60%) Query: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 + VT G GKTT+S ++ L + GKK++V Sbjct: 48 VTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 >4OI0-A nrPDB Length = 431 Score = 29.0 bits (63), Expect = 1.9, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 6 VVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQ 65 ++ G VGKTT S + ++G+ + ++ D+G ++ + +V +VI Sbjct: 120 LLLVGPTDVGKTTVSRILCNYSVRQGRTPIFVELDVGQNSVSVPGTVAAVLVQKTADVID 179 Query: 66 G 66 G Sbjct: 180 G 180 >3NVA-A nrPDB Length = 535 Score = 29.0 bits (63), Expect = 2.3, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Query: 5 IVVTSGK-GGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNV 63 IVVT G VGK T A+I L ++G + D +++ G ++ V V Sbjct: 6 IVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKID---PYINVDAGTMNPYMHGEVFV 62 Query: 64 IQGDATLNQALIKDKRTENLYIL 86 + A + L +R ++ + Sbjct: 63 TEDGAETDLDLGHYERFMDVNMT 85 >5OFO-C nrPDB Length = 871 Score = 29.0 bits (63), Expect = 2.4, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 48/291 (16%) Query: 6 VVTSGKGGVGKTTSSAAIA-------TGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVY 58 V G+ GVGKT +A KG++ + +D + E R+ Sbjct: 206 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKG 265 Query: 59 DFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKD--------ALTREGVAKVLDDLK 110 ++ + + + + L+ + + D G + Sbjct: 266 VLNDLAKQEGNV------ILFIDALHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT 319 Query: 111 AMDF-EFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKS----R 165 ++ ++I D A +E + P SV D+ IL L + Sbjct: 320 LDEYRQYIEKD--AALERRFQK--------VFVAEP---SVEDTIAILRGLKERYELHHH 366 Query: 166 RAENGEEPIKEHLLLTRYNPGRVSRGDMLS-MEDVLEILRIKLVGVIPE-----DQSVLR 219 + L RY R + +++ +R++ + PE D+ +++ Sbjct: 367 VQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQ-IDSKPEELDRLDRRIIQ 425 Query: 220 ASNQGEPVILDINADAGKAYADTVERLLGE-ERPFRFIEEEKKGFLKRLFG 269 + + ++ + +A K D + L + ER + +EEE K L G Sbjct: 426 LKLEQQ-ALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSG 475 >4B3F-X nrPDB Length = 646 Score = 28.7 bits (62), Expect = 2.5, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTV 35 + + G G GKTT+ I ++G K + Sbjct: 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVL 237 >5A4J-A nrPDB Length = 559 Score = 28.3 bits (61), Expect = 3.3, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Query: 13 GVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGC 52 G GKTT++ + L + GK ++ + +L + G Sbjct: 70 GEGKTTTTVGLGDALRRLGKNAMI---ALREPSLGPVFGI 106 >5LKM-A nrPDB Length = 452 Score = 28.3 bits (61), Expect = 4.1, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKG 31 +V+ G G+GK+T ++T L+Q G Sbjct: 90 LVLIGGDPGIGKSTLLLQVSTQLSQVG 116 >4CIU-A nrPDB Length = 727 Score = 27.9 bits (60), Expect = 4.5, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 48/291 (16%) Query: 6 VVTSGKGGVGKTTSSAAIA-------TGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVY 58 V G+ GVGKT +A KG++ + +D + E R+ Sbjct: 60 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKG 119 Query: 59 DFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKD--------ALTREGVAKVLDDLK 110 ++ + + + + L+ + + D G + Sbjct: 120 VLNDLAKQEGNV------ILFIDALHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT 173 Query: 111 AMDF-EFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKS----R 165 ++ ++I D A +E + P SV D+ IL L + Sbjct: 174 LDEYRQYIEKD--AALERRFQK--------VFVAEP---SVEDTIAILRGLKERYELHHH 220 Query: 166 RAENGEEPIKEHLLLTRYNPGRVSRGDMLS-MEDVLEILRIKLVGVIPE-----DQSVLR 219 + L RY R + +++ +R++ + PE D+ +++ Sbjct: 221 VQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQ-IDSKPEELDRLDRRIIQ 279 Query: 220 ASNQGEPVILDINADAGKAYADTVERLLGE-ERPFRFIEEEKKGFLKRLFG 269 + + ++ + +A K D + L + ER + +EEE K L G Sbjct: 280 LKLEQQ-ALMKASDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSG 329 >6CY1-A nrPDB Length = 329 Score = 27.9 bits (60), Expect = 4.6, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 10/110 (9%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD-IGLRNLDLIMGCERRVVYDFVNV 63 +++ G GVGKTT+ +A +G K V+ D +D ++ RV Sbjct: 125 VIMVVGVNGVGKTTTIGKLAHQFKSEGLKVVLGAADTFRAAAVDQLVIWSERV------- 177 Query: 64 IQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMD 113 G + QA+ D + + ++ ++D D + + ++ + + M+ Sbjct: 178 --GVPIVKQAMGSDPASVAFDTVQSAVSQDADVVIIDTAGRLHNKVNLMN 225 >2V3C-C nrPDB Length = 432 Score = 27.9 bits (60), Expect = 4.7, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 22/36 (61%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 +++ G G GKTT++A +A + ++G K +I D Sbjct: 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 >5GAF-i nrPDB Length = 398 Score = 27.5 bits (59), Expect = 6.1, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQK-GKKTVVIDFDIGLR-NLDLIMGCERRVVYDFVN 62 +V+ +G G GKTTS + L +K KK +V+ D+ + + +V DF Sbjct: 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 161 Query: 63 VIQGDATLN 71 G ++ Sbjct: 162 SDVGQKPVD 170 >2IYT-A nrPDB Length = 184 Score = 27.5 bits (59), Expect = 6.2, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 10/73 (13%) Query: 6 VVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI-----GLRNLDLIMGCERRVVYDF 60 V G G GK+T +A L ++D D+ R++ I + + Sbjct: 5 AVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVAIEQRTGRSIADIFATDGEQEFRR 59 Query: 61 VNVIQGDATLNQA 73 + A L Sbjct: 60 IEEDVVRAALADH 72 >5GAD-i nrPDB Length = 450 Score = 27.5 bits (59), Expect = 6.5, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQK-GKKTVVIDFDIGLR-NLDLIMGCERRVVYDFVN 62 +V+ +G G GKTTS + L +K KK +V+ D+ + + +V DF Sbjct: 99 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 158 Query: 63 VIQGDATLN 71 G ++ Sbjct: 159 SDVGQKPVD 167 >6D00-1 nrPDB Length = 883 Score = 27.5 bits (59), Expect = 6.5, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 42/296 (14%) Query: 1 MARIIVVTS----------GKGGVGKTTSSAAIATGLAQ------KGKKTVVIDFDIGLR 44 ++R+I V S G+ GVGKT + +A + + KK +D L Sbjct: 187 ISRVIRVLSRRTKNNPCLVGEPGVGKTAIAEGLANRIVKGDIPSSLQKKVYSLDIGSLLA 246 Query: 45 NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAK 104 E R+ + + A + I + G + Sbjct: 247 GAKYRGEFEERLKAVLKELKEAQAIVFIDEIHTVLGAGKSEGAIDAANLLKPMLARGELR 306 Query: 105 VLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKS 164 + ++ V PA F + E SV D+ IL L + Sbjct: 307 CIGATTLTEYRQYVEKDPA-----------FERRFQLVMVEEP-SVTDTISILRGLKERY 354 Query: 165 ----RRAENGEEPIKEHLLLTRYNPGRVSRGDMLS-MEDVLEILRIKLVGVIPE--DQSV 217 + L RY R + +++ R++L PE D+ Sbjct: 355 ETHHGVRIADAAIVAAAQLAARYITQRFMPDKAIDLIDEACANTRVQLDSQ-PEAIDKLE 413 Query: 218 LR-ASNQGEPVILDINADAG-----KAYADTVERLLGEERPFRFIEEEKKGFLKRL 267 R + E L+ DA + + R+ E RP + E +KG L + Sbjct: 414 RRHLQLEVEATALEKEKDAASKQRLQEVRAEMARIQEELRPLKMKYESEKGRLDEI 469 >2J28-9 nrPDB Length = 430 Score = 27.5 bits (59), Expect = 6.8, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQK-GKKTVVIDFDIGLR-NLDLIMGCERRVVYDFVN 62 +V+ +G G GKTTS + L +K KK +V+ D+ + + +V DF Sbjct: 101 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 160 Query: 63 VIQGDATLN 71 G ++ Sbjct: 161 SDVGQKPVD 169 >1NKS-A nrPDB Length = 194 Score = 27.1 bits (58), Expect = 8.0, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID-FDIGLRN 45 I + +G GVGK+T A + L +G +I+ D L Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLAT 44 >4C7O-A nrPDB Length = 298 Score = 27.1 bits (58), Expect = 8.3, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 5 IVVTSGKGGVGKTTSSAAIATGLAQK-GKKTVVIDFDIGLR-NLDLIMGCERRVVYDFVN 62 +V+ +G G GKTTS + L +K KK +V+ D+ + + +V DF Sbjct: 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 161 Query: 63 VIQGDATLN 71 G ++ Sbjct: 162 SDVGQKPVD 170 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.306 0.120 0.269 Lambda K H 0.267 0.0370 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,568,684 Number of Sequences: 36641 Number of extensions: 263248 Number of successful extensions: 1447 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 61 Number of HSP's that attempted gapping in prelim test: 1260 Number of HSP's gapped (non-prelim): 208 length of query: 270 length of database: 10,336,785 effective HSP length: 95 effective length of query: 175 effective length of database: 6,855,890 effective search space: 1199780750 effective search space used: 1199780750 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 58 (27.1 bits)