BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P0ADV9 (191 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6MI7-C nrPDB 392 e-110 3MY2-A nrPDB 350 2e-97 6MIT-C nrPDB 346 3e-96 6MJP-C nrPDB 92 1e-19 5OR1-A nrPDB 30 0.43 5D0Q-A nrPDB 30 0.57 2QCZ-A nrPDB 30 0.91 4PK1-A nrPDB 29 1.1 3EFC-A nrPDB 29 1.1 4XGA-B nrPDB 29 1.2 6IRT-A nrPDB 28 1.6 1YW4-A nrPDB 27 5.1 2DH2-A nrPDB 27 6.1 6HIZ-DW nrPDB 27 6.4 >6MI7-C nrPDB Length = 208 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY 60 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY Sbjct: 18 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY 77 Query: 61 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL 120 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL Sbjct: 78 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL 137 Query: 121 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT 180 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT Sbjct: 138 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT 197 Query: 181 SYEIQNKQTQP 191 SYEIQNKQTQP Sbjct: 198 SYEIQNKQTQP 208 >3MY2-A nrPDB Length = 175 Score = 350 bits (898), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 23 NMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPV 82 NMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPV Sbjct: 7 NMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPV 66 Query: 83 LTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQD 142 LTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQD Sbjct: 67 LTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQD 126 Query: 143 VTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP 191 VTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP Sbjct: 127 VTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP 175 >6MIT-C nrPDB Length = 195 Score = 346 bits (888), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 158/191 (82%), Positives = 181/191 (94%) Query: 1 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY 60 MSK RRWVII+LSL L++IG+N+A++DDT V+NNNDPTYKS+H+DT+VY+PEGAL+Y Sbjct: 1 MSKTRRWVIILLSLVALILIGVNLADRDDTQTEVINNNDPTYKSDHSDTVVYSPEGALNY 60 Query: 61 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL 120 RLIAQHVEY+SD +SWFTQPV+TTFDKDK+PTWS+K+D+AKLTNDRMLYLYGHVEVNAL Sbjct: 61 RLIAQHVEYFSDDGISWFTQPVMTTFDKDKVPTWSIKSDRAKLTNDRMLYLYGHVEVNAL 120 Query: 121 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT 180 DSQLR+ITTDNAQINLVTQDVTS+DLVTLYGTTFNSSGL+MRGNLRSKNAELIEKVRT Sbjct: 121 TADSQLRKITTDNAQINLVTQDVTSQDLVTLYGTTFNSSGLRMRGNLRSKNAELIEKVRT 180 Query: 181 SYEIQNKQTQP 191 SYEIQNKQTQP Sbjct: 181 SYEIQNKQTQP 191 >6MJP-C nrPDB Length = 191 Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 93/183 (50%) Query: 1 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY 60 MS +R +++L +A + + E+D QV N P + E+ + + Y+ +G +Y Sbjct: 1 MSLSRIVYVLLLFIASWSLYYLLGQEQDSKIQVAPNLELPMFSGENLENISYDEQGIRNY 60 Query: 61 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL 120 + + H+++Y+ + F P+L + + + W + A + L+ D++L LY V L Sbjct: 61 VITSIHLDHYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSKDQVLTLYDDVLAKNL 120 Query: 121 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT 180 +PDS +TT I L ++D ++ V L G F + G M+GN +AEL +V+ Sbjct: 121 LPDSGFDTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMKGNFADHSAELYNQVQG 180 Query: 181 SYE 183 YE Sbjct: 181 RYE 183 >5OR1-A nrPDB Length = 804 Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 23/120 (19%) Query: 65 QHVEYYSDQAVSWFTQPVLTTFD-KDKIPTWSVKAD----KAKLTND----RMLYL-YGH 114 Q + + A S T+ +++ F +D++P W+V D K KL D R YL G+ Sbjct: 178 QQINIVGNHAFS--TEELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGY 235 Query: 115 VEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAEL 174 N DS +T D I +T ++T D L SG+++ GNL +AE+ Sbjct: 236 ARFNI---DSTQVSLTPDKKGI-YITVNITEGDQYKL-------SGVQVSGNLAGHSAEI 284 >5D0Q-A nrPDB Length = 810 Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 20/96 (20%) Query: 88 KDKIPTWSVKAD----KAKLTND----RMLYL-YGHVEVNALVPDSQLRRITTDNAQINL 138 +D++P W+V D K KL D R YL G+ N DS +T D I Sbjct: 200 RDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI---DSTQVSLTPDKKGI-Y 255 Query: 139 VTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAEL 174 VT ++T D L SG+++ GNL +AE+ Sbjct: 256 VTVNITEGDQYKL-------SGVEVSGNLAGHSAEI 284 >2QCZ-A nrPDB Length = 335 Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 28/122 (22%) Query: 62 LIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKAD----KAKLTND----RMLYL-Y 112 ++ H + +D+ +S F +D++P W+V D K KL D R YL Sbjct: 166 IVGNHA-FTTDELISHFQL-------RDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDR 217 Query: 113 GHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNA 172 G+ N DS +T D I VT ++T G + SG+++ GNL +A Sbjct: 218 GYARFNI---DSTQVSLTPDKKGI-YVTVNITE-------GDQYKLSGVEVSGNLAGHSA 266 Query: 173 EL 174 E+ Sbjct: 267 EI 268 >4PK1-A nrPDB Length = 645 Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 28/122 (22%) Query: 62 LIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKAD----KAKLTND----RMLYL-Y 112 ++ H + +D+ +S F +D++P W+V D K KL D R YL Sbjct: 12 IVGNHA-FTTDELISHFQL-------RDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDR 63 Query: 113 GHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNA 172 G+ N DS +T D I VT ++T D L SG+++ GNL +A Sbjct: 64 GYARFNI---DSTQVSLTPDKKGI-YVTVNITEGDQYKL-------SGVEVSGNLAGHSA 112 Query: 173 EL 174 E+ Sbjct: 113 EI 114 >3EFC-A nrPDB Length = 395 Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 28/122 (22%) Query: 62 LIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKAD----KAKLTND----RMLYL-Y 112 ++ H + +D+ +S F +D++P W+V D K KL D R YL Sbjct: 165 IVGNHA-FTTDELISHFQL-------RDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDR 216 Query: 113 GHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNA 172 G+ N DS +T D I VT ++T G + SG+++ GNL +A Sbjct: 217 GYARFNI---DSTQVSLTPDKKGI-YVTVNITE-------GDQYKLSGVEVSGNLAGHSA 265 Query: 173 EL 174 E+ Sbjct: 266 EI 267 >4XGA-B nrPDB Length = 246 Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 28/122 (22%) Query: 62 LIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKAD----KAKLTND----RMLYL-Y 112 ++ H + +D+ +S F +D++P W+V D K KL D R YL Sbjct: 8 IVGNHA-FTTDELISHFQL-------RDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDR 59 Query: 113 GHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNA 172 G+ N DS +T D I VT ++T G + SG+++ GNL +A Sbjct: 60 GYARFNI---DSTQVSLTPDKKGI-YVTVNITE-------GDQYKLSGVEVSGNLAGHSA 108 Query: 173 EL 174 E+ Sbjct: 109 EI 110 >6IRT-A nrPDB Length = 647 Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 3 KARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS-EHTDTLVYNPEGALSYR 61 K R + L + LV+ I+ +KDD AQ + DP + S E D+L+ + + S R Sbjct: 260 KGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKK-SIR 318 Query: 62 LIAQHVEYYSDQAVSWFTQPVLT--TFDKDKIPTW 94 +I Y + SWF+ V T T KD + W Sbjct: 319 VILDLTPNYRGEN-SWFSTQVDTVATKVKDALEFW 352 >1YW4-A nrPDB Length = 341 Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 86 FDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNA 134 D+DK+P + K D K + L L VE L+PD L I D A Sbjct: 250 LDEDKLPLFRAKYDLVKHSEAFKLNLADSVENFTLLPDGML--IAEDGA 296 >2DH2-A nrPDB Length = 424 Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 3 KARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS-EHTDTLVYNPEGALSYR 61 K R + L + LV+ I+ +KDD AQ + DP + S E D+L+ + + S R Sbjct: 39 KGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKK-SIR 97 Query: 62 LIAQHVEYYSDQAVSWFTQPV--LTTFDKDKIPTW 94 +I Y + SWF+ V + T KD + W Sbjct: 98 VILDLTPNYRGEN-SWFSTQVDTVATKVKDALEFW 131 >6HIZ-DW nrPDB Length = 179 Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 67 VEYYSDQAVSWFTQPVLTTFDK-DKIPTWSVKA 98 V +Y V W +PV T+D D++ W+++A Sbjct: 45 VAWYDKGPVEWLPRPVRLTYDHLDQLQQWTMRA 77 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6MI7-C nrPDB 314 2e-86 6MIT-C nrPDB 307 1e-84 6MJP-C nrPDB 292 7e-80 3MY2-A nrPDB 278 9e-76 Sequences not found previously or not previously below threshold: 5OR1-A nrPDB 36 0.008 5D0Q-A nrPDB 36 0.012 3EFC-A nrPDB 35 0.013 4PK1-A nrPDB 35 0.013 2QCZ-A nrPDB 35 0.014 4XGA-B nrPDB 35 0.023 6HIZ-DW nrPDB 29 1.5 4G56-B nrPDB 28 2.4 3UIU-A nrPDB 28 2.5 2Q3N-B nrPDB 28 2.7 3KZ4-A nrPDB 27 3.5 6OJ5-A nrPDB 27 3.6 1ABR-B nrPDB 27 3.8 6C4A-A nrPDB 27 5.0 CONVERGED! >6MI7-C nrPDB Length = 208 Score = 314 bits (804), Expect = 2e-86, Method: Composition-based stats. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY 60 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY Sbjct: 18 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY 77 Query: 61 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL 120 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL Sbjct: 78 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL 137 Query: 121 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT 180 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT Sbjct: 138 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT 197 Query: 181 SYEIQNKQTQP 191 SYEIQNKQTQP Sbjct: 198 SYEIQNKQTQP 208 >6MIT-C nrPDB Length = 195 Score = 307 bits (787), Expect = 1e-84, Method: Composition-based stats. Identities = 158/191 (82%), Positives = 181/191 (94%) Query: 1 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY 60 MSK RRWVII+LSL L++IG+N+A++DDT V+NNNDPTYKS+H+DT+VY+PEGAL+Y Sbjct: 1 MSKTRRWVIILLSLVALILIGVNLADRDDTQTEVINNNDPTYKSDHSDTVVYSPEGALNY 60 Query: 61 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL 120 RLIAQHVEY+SD +SWFTQPV+TTFDKDK+PTWS+K+D+AKLTNDRMLYLYGHVEVNAL Sbjct: 61 RLIAQHVEYFSDDGISWFTQPVMTTFDKDKVPTWSIKSDRAKLTNDRMLYLYGHVEVNAL 120 Query: 121 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT 180 DSQLR+ITTDNAQINLVTQDVTS+DLVTLYGTTFNSSGL+MRGNLRSKNAELIEKVRT Sbjct: 121 TADSQLRKITTDNAQINLVTQDVTSQDLVTLYGTTFNSSGLRMRGNLRSKNAELIEKVRT 180 Query: 181 SYEIQNKQTQP 191 SYEIQNKQTQP Sbjct: 181 SYEIQNKQTQP 191 >6MJP-C nrPDB Length = 191 Score = 292 bits (747), Expect = 7e-80, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 93/183 (50%) Query: 1 MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSY 60 MS +R +++L +A + + E+D QV N P + E+ + + Y+ +G +Y Sbjct: 1 MSLSRIVYVLLLFIASWSLYYLLGQEQDSKIQVAPNLELPMFSGENLENISYDEQGIRNY 60 Query: 61 RLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNAL 120 + + H+++Y+ + F P+L + + + W + A + L+ D++L LY V L Sbjct: 61 VITSIHLDHYAKSGNTLFKAPILKVYREGTLQEWEITARRGILSKDQVLTLYDDVLAKNL 120 Query: 121 VPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT 180 +PDS +TT I L ++D ++ V L G F + G M+GN +AEL +V+ Sbjct: 121 LPDSGFDTLTTSEMSIQLKSRDFWADKPVELRGPQFETHGQAMKGNFADHSAELYNQVQG 180 Query: 181 SYE 183 YE Sbjct: 181 RYE 183 >3MY2-A nrPDB Length = 175 Score = 278 bits (711), Expect = 9e-76, Method: Composition-based stats. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 23 NMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPV 82 NMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPV Sbjct: 7 NMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPV 66 Query: 83 LTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQD 142 LTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQD Sbjct: 67 LTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQD 126 Query: 143 VTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP 191 VTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP Sbjct: 127 VTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP 175 >5OR1-A nrPDB Length = 804 Score = 36.3 bits (82), Expect = 0.008, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 88 KDKIPTWSVKADKAKLTNDRMLYLYGHVE-VNALVPDSQLRRITTDNAQINLVTQDVTSE 146 +D++P W+V D+ + L G +E + + D R D+ Q++L Sbjct: 200 RDEVPWWNVVGDR----KYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIY 255 Query: 147 DLVTL-YGTTFNSSGLKMRGNLRSKNAELIE 176 V + G + SG+++ GNL +AE+ Sbjct: 256 ITVNITEGDQYKLSGVQVSGNLAGHSAEIEN 286 >5D0Q-A nrPDB Length = 810 Score = 35.9 bits (81), Expect = 0.012, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 88 KDKIPTWSVKADKAKLTNDRMLYLYGHVE-VNALVPDSQLRRITTDNAQINLVTQDVTSE 146 +D++P W+V D+ + L G +E + + D R D+ Q++L Sbjct: 200 RDEVPWWNVVGDR----KYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIY 255 Query: 147 DLVTL-YGTTFNSSGLKMRGNLRSKNAEL 174 V + G + SG+++ GNL +AE+ Sbjct: 256 VTVNITEGDQYKLSGVEVSGNLAGHSAEI 284 >3EFC-A nrPDB Length = 395 Score = 35.5 bits (80), Expect = 0.013, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 88 KDKIPTWSVKADKAKLTNDRMLYLYGHVE-VNALVPDSQLRRITTDNAQINLVTQDVTSE 146 +D++P W+V D+ + L G +E + + D R D+ Q++L Sbjct: 183 RDEVPWWNVVGDR----KYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIY 238 Query: 147 DLVTL-YGTTFNSSGLKMRGNLRSKNAEL 174 V + G + SG+++ GNL +AE+ Sbjct: 239 VTVNITEGDQYKLSGVEVSGNLAGHSAEI 267 >4PK1-A nrPDB Length = 645 Score = 35.5 bits (80), Expect = 0.013, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 88 KDKIPTWSVKADKAKLTNDRMLYLYGHVE-VNALVPDSQLRRITTDNAQINLVTQDVTSE 146 +D++P W+V D+ + L G +E + + D R D+ Q++L Sbjct: 30 RDEVPWWNVVGDR----KYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIY 85 Query: 147 DLVTL-YGTTFNSSGLKMRGNLRSKNAEL 174 V + G + SG+++ GNL +AE+ Sbjct: 86 VTVNITEGDQYKLSGVEVSGNLAGHSAEI 114 >2QCZ-A nrPDB Length = 335 Score = 35.5 bits (80), Expect = 0.014, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 88 KDKIPTWSVKADKAKLTNDRMLYLYGHVE-VNALVPDSQLRRITTDNAQINLVTQDVTSE 146 +D++P W+V D+ + L G +E + + D R D+ Q++L Sbjct: 184 RDEVPWWNVVGDR----KYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIY 239 Query: 147 DLVTL-YGTTFNSSGLKMRGNLRSKNAEL 174 V + G + SG+++ GNL +AE+ Sbjct: 240 VTVNITEGDQYKLSGVEVSGNLAGHSAEI 268 >4XGA-B nrPDB Length = 246 Score = 34.7 bits (78), Expect = 0.023, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 88 KDKIPTWSVKADKAKLTNDRMLYLYGHVE-VNALVPDSQLRRITTDNAQINLVTQDVTSE 146 +D++P W+V D+ + L G +E + + D R D+ Q++L Sbjct: 26 RDEVPWWNVVGDR----KYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIY 81 Query: 147 DLVTL-YGTTFNSSGLKMRGNLRSKNAEL 174 V + G + SG+++ GNL +AE+ Sbjct: 82 VTVNITEGDQYKLSGVEVSGNLAGHSAEI 110 >6HIZ-DW nrPDB Length = 179 Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Query: 64 AQHVEYYSDQAVSWFTQPVLTTFDK-DKIPTWSVKA 98 + +V +Y V W +PV T+D D++ W+++A Sbjct: 42 SDNVAWYDKGPVEWLPRPVRLTYDHLDQLQQWTMRA 77 >4G56-B nrPDB Length = 357 Score = 28.2 bits (61), Expect = 2.4, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 53 NPEGALSYRLIAQHVEYYSD-QAVSWFTQP-VLTTFDKDKIPTWSVKADKAKLTNDRMLY 110 +PEGA + L V+ + V+W ++ +L D + W + ++ L N Y Sbjct: 77 DPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKY 136 Query: 111 LYGHV 115 + + Sbjct: 137 EHDDI 141 >3UIU-A nrPDB Length = 306 Score = 28.2 bits (61), Expect = 2.5, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 11/77 (14%) Query: 39 DPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKA 98 DP + ++ Y+PE + + + F Q + DK + W K Sbjct: 80 DPETSDDSLESSDYDPENSKNSS---------RSKTKCLFIQ--MEFCDKGTLEQWIEKR 128 Query: 99 DKAKLTNDRMLYLYGHV 115 KL L L+ + Sbjct: 129 RGEKLDKVLALELFEQI 145 >2Q3N-B nrPDB Length = 267 Score = 27.8 bits (60), Expect = 2.7, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 12/103 (11%) Query: 81 PVLTTFDKDKI---PTWSVKADKAKLTNDRMLYLYGHVEVN--------ALVPDSQLRRI 129 P++ KD++ W++K+DK + + L YG+ N + V ++ I Sbjct: 38 PIILWKCKDQLEVNQLWTLKSDKTIRSKGKCLTTYGYAPGNYVMIYDCSSAVAEATYWDI 97 Query: 130 TTDNAQINLVTQDVTSEDLVTLYGT-TFNSSGLKMRGNLRSKN 171 + IN + V S + ++ GT T + +MR R+ N Sbjct: 98 WDNGTIINPKSGLVLSAESSSMGGTLTVQKNDYRMRQGWRTGN 140 >3KZ4-A nrPDB Length = 880 Score = 27.4 bits (59), Expect = 3.5, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 109 LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNS 158 + ++ ++VPD L+ + + AQI ++QD+ E L T F + Sbjct: 321 ITTSNYILARSVVPD--LKELVSTEAQIQKMSQDLQLEALTIQSETQFLT 368 >6OJ5-A nrPDB Length = 887 Score = 27.4 bits (59), Expect = 3.6, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 109 LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNS 158 + ++ ++VPD L+ + + AQI ++QD+ E L T F + Sbjct: 328 ITTSNYILARSVVPD--LKELVSTEAQIQKMSQDLQLEALTIQSETQFLT 375 >1ABR-B nrPDB Length = 267 Score = 27.4 bits (59), Expect = 3.8, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 12/96 (12%) Query: 88 KDKIPT---WSVKADKAKLTNDRMLYLYGHV--------EVNALVPDSQLRRITTDNAQI 136 KD++ W++K+DK +N + L YG+ + + V ++ I + I Sbjct: 45 KDRLEENQLWTLKSDKTIRSNGKCLTTYGYAPGSYVMIYDCTSAVAEATYWEIWDNGTII 104 Query: 137 NLVTQDVTSEDLVTLYGT-TFNSSGLKMRGNLRSKN 171 N + V S + ++ GT T ++ MR R+ N Sbjct: 105 NPKSALVLSAESSSMGGTLTVQTNEYLMRQGWRTGN 140 >6C4A-A nrPDB Length = 442 Score = 27.0 bits (58), Expect = 5.0, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 139 VTQDVTSEDLVTLYGTTFNSSGLKMRG 165 VT+ ++ED+V L G+ L RG Sbjct: 40 VTRTYSAEDVVALQGSVVEEHTLARRG 66 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.306 0.128 0.329 Lambda K H 0.267 0.0392 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,251,548 Number of Sequences: 36641 Number of extensions: 220670 Number of successful extensions: 638 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 28 Number of HSP's that attempted gapping in prelim test: 625 Number of HSP's gapped (non-prelim): 40 length of query: 191 length of database: 10,336,785 effective HSP length: 92 effective length of query: 99 effective length of database: 6,965,813 effective search space: 689615487 effective search space used: 689615487 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 56 (26.2 bits)