BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P09936 (223 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4JKJ-A nrPDB 459 e-130 6ISU-A nrPDB 266 5e-72 2WDT-A nrPDB 120 3e-28 1CMX-A nrPDB 81 4e-16 6CGA-A nrPDB 69 1e-12 6HGC-B nrPDB 69 1e-12 4UF6-A nrPDB 66 1e-11 4I6N-A nrPDB 64 4e-11 4IG7-A nrPDB 64 5e-11 3RII-A nrPDB 63 8e-11 2NNL-D nrPDB 33 0.13 5MTO-A nrPDB 29 1.8 5Z70-A nrPDB 28 3.1 6QVC-B nrPDB 28 4.0 5CAX-A nrPDB 27 5.3 4W4G-QR nrPDB 27 7.4 6GZQ-R2 nrPDB 27 8.5 4YHH-R nrPDB 27 8.6 >4JKJ-A nrPDB Length = 228 Score = 459 bits (1181), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/223 (99%), Positives = 222/223 (99%) Query: 1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE 60 MQLKPMEINPEMLNKVL RLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE Sbjct: 6 MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE 65 Query: 61 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE 120 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE Sbjct: 66 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE 125 Query: 121 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP 180 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP Sbjct: 126 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP 185 Query: 181 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 223 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA Sbjct: 186 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 228 >6ISU-A nrPDB Length = 230 Score = 266 bits (680), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 123/223 (55%), Positives = 168/223 (75%), Gaps = 5/223 (2%) Query: 5 PMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRK 64 P+E NPE+ N+ L +LG+ W+FVDV G++ E L VP P CA+LLLFP+T ++E FR Sbjct: 8 PLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRT 67 Query: 65 KQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETE 122 ++ E++K GQ+V+ VYFMKQTI N+CGTIGLIHA+ANN+DK+ FE GS LK+FL E+ Sbjct: 68 EEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESV 127 Query: 123 KMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHLYELDGRM 179 MSPE+RA+ E +AI+ H+ A EGQ +D+KV+ HFI +VDGHLYELDGR Sbjct: 128 SMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRK 187 Query: 180 PFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKA 222 PFP+NHG +S++TLL+DA +VC++F ER+ E+RF+A+AL A Sbjct: 188 PFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 230 >2WDT-A nrPDB Length = 232 Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 10/220 (4%) Query: 5 PMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLT---AQHEN 61 P+E NP+ L +LG + +FVD+ G + L +P P A++ L+P+ N Sbjct: 9 PLESNPDSLYLYSCKLG-QSKLKFVDIYGFNNDLLDMIPQPVQAVIFLYPVNDNIVSENN 67 Query: 62 FRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSET 121 K +E V+F+KQ I NSCGTI L+H N ++K + SVL F ++ Sbjct: 68 TNDKH----NLKENFDNVWFIKQYIPNSCGTIALLHLYGNLRNKFELDKDSVLDDFFNKV 123 Query: 122 EKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDD-KVNFHFILFNNVDGHLYELDGRMP 180 +MS E R + + N++I+ H + + R D V+ HFI+F ++G + ELDGR Sbjct: 124 NEMSAEKRGQELKNNKSIENLHHEFCGQVENRDDILDVDTHFIVFVQIEGKIIELDGRKD 183 Query: 181 FPVNHGASSEDTLLKDAAKVCRE-FTEREQGEVRFSAVAL 219 P H ++ D L D K+ ++ F E+ + ++RFSA+A+ Sbjct: 184 HPTVHCFTNGDNFLYDTGKIIQDKFIEKCKDDLRFSALAV 223 >1CMX-A nrPDB Length = 235 Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 20/184 (10%) Query: 5 PMEINPEMLNKVLSRLGVAGQWRFVDVLGLEE-ESLGSVPAPACALLLLFPLTAQHENFR 63 P+E NPE+ +LG+ +W + D+ L E E L +P P A++LLFP+ Sbjct: 10 PIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPIN------E 63 Query: 64 KKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFL-SETE 122 ++ + S V + KQ++ N+CG ++H+++NNQ L E GS L FL S+++ Sbjct: 64 DRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLL--EPGSDLDNFLKSQSD 121 Query: 123 KMSPEDRAKCFEKN--------EAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYE 174 S ++R + E +Q ++ + D N H+I + +G ++E Sbjct: 122 TSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATAD--TNLHYITYVEENGGIFE 179 Query: 175 LDGR 178 LDGR Sbjct: 180 LDGR 183 >6CGA-A nrPDB Length = 365 Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 29/181 (16%) Query: 63 RKKQIEE-----LKGQEVSPKVYFMKQTIGNSCGTIGLIHAVAN-NQDKLGFEDGSVLKQ 116 R+K +E +K +E ++F +Q + NSC T L+ + N N++ L G L + Sbjct: 60 RRKIVETTAEIFVKDEEAISSIFFAQQVVPNSCATHALLSVLLNCNENNLQL--GDTLSR 117 Query: 117 FLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQE-------------GQCRVDDKVNFHFI 163 + T+ MSPE++ + AH++ A CR + FHF+ Sbjct: 118 LKTHTKGMSPENKGLAIGNTPELACAHNSHAMPQARRRLERTGAGVSSCRFTGEA-FHFV 176 Query: 164 LFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTER-----EQGEVRFSAVA 218 F ++G L+ELDG P+P+NHG + D K R ER + ++RF+ +A Sbjct: 177 SFVPINGQLFELDGLKPYPMNHGGWEDSEDWTD--KFRRVMAERLGIATGEQDIRFNLMA 234 Query: 219 L 219 + Sbjct: 235 V 235 >6HGC-B nrPDB Length = 310 Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 29/181 (16%) Query: 63 RKKQIEE-----LKGQEVSPKVYFMKQTIGNSCGTIGLIHAVAN-NQDKLGFEDGSVLKQ 116 R+K +E +K +E ++F +Q + NSC T L+ + N N++ L G L + Sbjct: 57 RRKIVETTAEIFVKDEEAISSIFFAQQVVPNSCATHALLSVLLNCNENNLQL--GDTLSR 114 Query: 117 FLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQE-------------GQCRVDDKVNFHFI 163 + T+ MSPE++ + AH++ A CR + FHF+ Sbjct: 115 LKTHTKGMSPENKGLAIGNTPELACAHNSHAMPQARRRLERTGAGVSSCRFTGEA-FHFV 173 Query: 164 LFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTER-----EQGEVRFSAVA 218 F ++G L+ELDG P+P+NHG + D K R ER + ++RF+ +A Sbjct: 174 SFVPINGQLFELDGLKPYPMNHGGWEDSEDWTD--KFRRVMAERLGIATGEQDIRFNLMA 231 Query: 219 L 219 + Sbjct: 232 V 232 >4UF6-A nrPDB Length = 331 Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 27/228 (11%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65 ME +P + +++ G G + ++ LE E+ + P L+ LF + + Sbjct: 14 MESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF---------KWQ 62 Query: 66 QIEELKGQEVSPK----VYFMKQTIGNSCGTIGLIHAVAN--NQDKLGFEDGSVLKQFLS 119 EE G V ++F KQ I N+C T ++ + N +QD G L +F Sbjct: 63 PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQD---VHLGETLSEFKE 119 Query: 120 ETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLY 173 ++ + ++ I+ H++ A++ D K + FHF+ + V+G LY Sbjct: 120 FSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLY 179 Query: 174 ELDGRMPFPVNHGASSEDTLLKDAAKVC-REFTEREQGEVRFSAVALC 220 ELDG P++ GA ++D + V + + +GE+RF+ +A+ Sbjct: 180 ELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIV 227 >4I6N-A nrPDB Length = 231 Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 17/222 (7%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65 +E +P + +++ G G V+ L + +ES+ + P + LF + +K Sbjct: 14 IESDPGIFTEMIHGFGCTGLQ--VEELVVLDESIEHL-KPIHGFIFLFRWLKKE---MRK 67 Query: 66 QIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMS 125 ++++ + VYF +Q I N+C + LI+ + N D + G LK+F T + Sbjct: 68 EVDD--SPQTCTDVYFSQQVIQNACASQALINLLLNC-DHPDVDLGPTLKEFKDFTYDLD 124 Query: 126 PEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYELDGRM 179 R C +E I+A H++ ++ +DD+ FHF+ + V+ +YELDG Sbjct: 125 SASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLR 184 Query: 180 PFPVNHGASSEDTLLKDAA-KVCRE-FTEREQGEVRFSAVAL 219 P+ G + D + A K +E + EVRF+ +A+ Sbjct: 185 AAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLMAV 226 >4IG7-A nrPDB Length = 343 Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 17/222 (7%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65 +E +P + +++ G G V+ L + +ES+ + P + LF + +K Sbjct: 43 IESDPGIFTEMIHGFGCTGLQ--VEELVVLDESIEHLK-PIHGFIFLFRWLKKE---MRK 96 Query: 66 QIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMS 125 ++++ + VYF +Q I N+C + LI+ + N D + G LK+F T + Sbjct: 97 EVDD--SPQTCTDVYFSQQVIQNACASQALINLLLNC-DHPDVDLGPTLKEFKDFTYDLD 153 Query: 126 PEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYELDGRM 179 R C +E I+A H++ ++ +DD+ FHF+ + V+ +YELDG Sbjct: 154 SASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLR 213 Query: 180 PFPVNHGASSEDTLLKDAA-KVCRE-FTEREQGEVRFSAVAL 219 P+ G + D + A K +E + EVRF+ +A+ Sbjct: 214 AAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLMAV 255 >3RII-A nrPDB Length = 233 Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 27/227 (11%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65 ME +P + +++ G G + ++ LE E+ + P L+ LF + + Sbjct: 16 MESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF---------KWQ 64 Query: 66 QIEELKGQEVSPK----VYFMKQTIGNSCGTIGLIHAVAN--NQDKLGFEDGSVLKQFLS 119 EE G V ++F KQ I N+ T ++ + N +QD G L +F Sbjct: 65 PGEEPAGSVVQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQD---VHLGETLSEFKE 121 Query: 120 ETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLY 173 ++ + ++ I+ H++ A++ D K + FHF+ + V+G LY Sbjct: 122 FSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLY 181 Query: 174 ELDGRMPFPVNHGASSEDTLLKDAAKVC-REFTEREQGEVRFSAVAL 219 ELDG P++ GA ++D + V + + +GE+RF+ +A+ Sbjct: 182 ELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 228 >2NNL-D nrPDB Length = 337 Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 19/138 (13%) Query: 67 IEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSP 126 +E + ++++ +YF+ +T+ +A NN D + V+ F+ + S Sbjct: 150 MEFCRAKKMTAWMYFVSKTLAEQAA---WKYAKENNIDFITIIPTLVVGPFIMSSMPPSL 206 Query: 127 EDRAKCFEKNEAIQAAHDAVAQEGQ-CRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNH 185 NEA H ++ ++GQ +DD N H LF N +GR + Sbjct: 207 ITALSPITGNEA----HYSIIRQGQFVHLDDLCNAHIYLFENPKA-----EGR------Y 251 Query: 186 GASSEDTLLKDAAKVCRE 203 SS D ++ D AK+ RE Sbjct: 252 ICSSHDCIILDLAKMLRE 269 >5MTO-A nrPDB Length = 107 Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 11/64 (17%) Query: 116 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR--VDDKVNFHFILFNNVDGHLY 173 +++S + +SP+ R + +K IQ A+ +C+ DDKV + VD H+ Sbjct: 50 EYISTVKTLSPDQRVERLQK---IQNAY------SKCKEYSDDKVQLAMQTYEMVDKHIR 100 Query: 174 ELDG 177 LD Sbjct: 101 RLDA 104 >5Z70-A nrPDB Length = 605 Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Query: 51 LLFPLTAQHENFRKKQIEELKGQ----EVSPKVYFMKQTIGNSCGTIGLIHAVANNQDK 105 L+FP Q+++F + LKGQ E +VY + T N T+ I A + +D+ Sbjct: 200 LVFPKYNQYDSFVVPLVNYLKGQGVNVEFGTRVYDLDMTDNNGERTVTSILAKVDGRDQ 258 >6QVC-B nrPDB Length = 988 Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 19/41 (46%) Query: 86 IGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSP 126 IG CG +G + + Q LG L QFL++ + P Sbjct: 354 IGICCGLLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYP 394 >5CAX-A nrPDB Length = 101 Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Query: 15 KVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE-----NFRKKQIEE 69 K+L+ LGV ++ FVD+L EE+S + FP T ++ F++KQI E Sbjct: 38 KLLTDLGVDFEYVFVDLLEEEEKSNAIKQVSRFNPSVSFPTTILNDEKAIVGFKEKQIRE 97 Query: 70 LKG 72 G Sbjct: 98 ALG 100 >4W4G-QR nrPDB Length = 88 Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 22/46 (47%) Query: 96 IHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQA 141 + A D + + VLK+FLSET K+ P R K + I A Sbjct: 22 VKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILA 67 >6GZQ-R2 nrPDB Length = 62 Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 19/34 (55%) Query: 108 FEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQA 141 + + VLK+FLSET K+ P R K + I A Sbjct: 8 YRNVEVLKRFLSETGKILPRRRTGLSAKEQRILA 41 >4YHH-R nrPDB Length = 73 Score = 26.6 bits (57), Expect = 8.6, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 22/46 (47%) Query: 96 IHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQA 141 + A D + + VLK+FLSET K+ P R K + I A Sbjct: 7 VKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILA 52 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4JKJ-A nrPDB 340 3e-94 6ISU-A nrPDB 299 5e-82 2WDT-A nrPDB 256 5e-69 4IG7-A nrPDB 244 2e-65 4I6N-A nrPDB 243 4e-65 4UF6-A nrPDB 238 2e-63 3RII-A nrPDB 238 2e-63 6HGC-B nrPDB 213 5e-56 6CGA-A nrPDB 211 1e-55 1CMX-A nrPDB 188 2e-48 Sequences not found previously or not previously below threshold: 5D68-A nrPDB 30 0.67 3P5B-L nrPDB 29 1.3 3M0C-C nrPDB 29 1.3 1N7D-A nrPDB 29 1.3 CONVERGED! >4JKJ-A nrPDB Length = 228 Score = 340 bits (871), Expect = 3e-94, Method: Composition-based stats. Identities = 222/223 (99%), Positives = 222/223 (99%) Query: 1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE 60 MQLKPMEINPEMLNKVL RLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE Sbjct: 6 MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE 65 Query: 61 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE 120 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE Sbjct: 66 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE 125 Query: 121 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP 180 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP Sbjct: 126 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP 185 Query: 181 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 223 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA Sbjct: 186 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 228 >6ISU-A nrPDB Length = 230 Score = 299 bits (766), Expect = 5e-82, Method: Composition-based stats. Identities = 123/223 (55%), Positives = 168/223 (75%), Gaps = 5/223 (2%) Query: 5 PMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRK 64 P+E NPE+ N+ L +LG+ W+FVDV G++ E L VP P CA+LLLFP+T ++E FR Sbjct: 8 PLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRT 67 Query: 65 KQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETE 122 ++ E++K GQ+V+ VYFMKQTI N+CGTIGLIHA+ANN+DK+ FE GS LK+FL E+ Sbjct: 68 EEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESV 127 Query: 123 KMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHLYELDGRM 179 MSPE+RA+ E +AI+ H+ A EGQ +D+KV+ HFI +VDGHLYELDGR Sbjct: 128 SMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRK 187 Query: 180 PFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKA 222 PFP+NHG +S++TLL+DA +VC++F ER+ E+RF+A+AL A Sbjct: 188 PFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 230 >2WDT-A nrPDB Length = 232 Score = 256 bits (654), Expect = 5e-69, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 10/221 (4%) Query: 5 PMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLT---AQHEN 61 P+E NP+ L +LG + +FVD+ G + L +P P A++ L+P+ N Sbjct: 9 PLESNPDSLYLYSCKLG-QSKLKFVDIYGFNNDLLDMIPQPVQAVIFLYPVNDNIVSENN 67 Query: 62 FRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSET 121 K +E V+F+KQ I NSCGTI L+H N ++K + SVL F ++ Sbjct: 68 TNDKH----NLKENFDNVWFIKQYIPNSCGTIALLHLYGNLRNKFELDKDSVLDDFFNKV 123 Query: 122 EKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDD-KVNFHFILFNNVDGHLYELDGRMP 180 +MS E R + + N++I+ H + + R D V+ HFI+F ++G + ELDGR Sbjct: 124 NEMSAEKRGQELKNNKSIENLHHEFCGQVENRDDILDVDTHFIVFVQIEGKIIELDGRKD 183 Query: 181 FPVNHGASSEDTLLKDAAKVCRE-FTEREQGEVRFSAVALC 220 P H ++ D L D K+ ++ F E+ + ++RFSA+A+ Sbjct: 184 HPTVHCFTNGDNFLYDTGKIIQDKFIEKCKDDLRFSALAVI 224 >4IG7-A nrPDB Length = 343 Score = 244 bits (623), Expect = 2e-65, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 17/224 (7%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65 +E +P + +++ G G V+ L + +ES+ + P + LF + +K Sbjct: 43 IESDPGIFTEMIHGFGCTGLQ--VEELVVLDESIEHL-KPIHGFIFLFRWLKKE---MRK 96 Query: 66 QIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMS 125 ++++ + VYF +Q I N+C + LI+ + N D + G LK+F T + Sbjct: 97 EVDDS--PQTCTDVYFSQQVIQNACASQALINLLLNC-DHPDVDLGPTLKEFKDFTYDLD 153 Query: 126 PEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYELDGRM 179 R C +E I+A H++ ++ +DD+ FHF+ + V+ +YELDG Sbjct: 154 SASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLR 213 Query: 180 PFPVNHGASSEDTLLKDAA-KVCRE-FTEREQGEVRFSAVALCK 221 P+ G + D + A K +E + EVRF+ +A+ Sbjct: 214 AAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLMAVIS 257 >4I6N-A nrPDB Length = 231 Score = 243 bits (621), Expect = 4e-65, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 17/224 (7%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65 +E +P + +++ G G V+ L + +ES+ + P + LF + +K Sbjct: 14 IESDPGIFTEMIHGFGCTGLQ--VEELVVLDESIEHL-KPIHGFIFLFRWLKKE---MRK 67 Query: 66 QIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMS 125 ++++ + VYF +Q I N+C + LI+ + N D + G LK+F T + Sbjct: 68 EVDDS--PQTCTDVYFSQQVIQNACASQALINLLLNC-DHPDVDLGPTLKEFKDFTYDLD 124 Query: 126 PEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYELDGRM 179 R C +E I+A H++ ++ +DD+ FHF+ + V+ +YELDG Sbjct: 125 SASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLR 184 Query: 180 PFPVNHGASSEDTLLKDAA-KVCRE-FTEREQGEVRFSAVALCK 221 P+ G + D + A K +E + EVRF+ +A+ Sbjct: 185 AAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLMAVIS 228 >4UF6-A nrPDB Length = 331 Score = 238 bits (607), Expect = 2e-63, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 23/227 (10%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65 ME +P + +++ G G + ++ LE E+ + P L+ LF + + Sbjct: 14 MESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF---------KWQ 62 Query: 66 QIEELKGQEVSPK----VYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSET 121 EE G V ++F KQ I N+C T ++ + N G L +F + Sbjct: 63 PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNC-THQDVHLGETLSEFKEFS 121 Query: 122 EKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYEL 175 + + ++ I+ H++ A++ D K + FHF+ + V+G LYEL Sbjct: 122 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYEL 181 Query: 176 DGRMPFPVNHGASSEDTLLKDAAKVC-REFTEREQGEVRFSAVALCK 221 DG P++ GA ++D + V + + +GE+RF+ +A+ Sbjct: 182 DGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVS 228 >3RII-A nrPDB Length = 233 Score = 238 bits (606), Expect = 2e-63, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 23/227 (10%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65 ME +P + +++ G G + ++ LE E+ + P L+ LF + + Sbjct: 16 MESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF---------KWQ 64 Query: 66 QIEELKGQEVSPK----VYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSET 121 EE G V ++F KQ I N+ T ++ + N G L +F + Sbjct: 65 PGEEPAGSVVQDSRLDTIFFAKQVINNASATQAIVSVLLNC-THQDVHLGETLSEFKEFS 123 Query: 122 EKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYEL 175 + + ++ I+ H++ A++ D K + FHF+ + V+G LYEL Sbjct: 124 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYEL 183 Query: 176 DGRMPFPVNHGASSEDTLLKDAAKVC-REFTEREQGEVRFSAVALCK 221 DG P++ GA ++D + V + + +GE+RF+ +A+ Sbjct: 184 DGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVS 230 >6HGC-B nrPDB Length = 310 Score = 213 bits (542), Expect = 5e-56, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 40/241 (16%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPAC---ALLLLFPLTAQHENF 62 +E +P + +L G + +V L+ P + LF + Sbjct: 7 LESDPGLFTLLLKDFGCH-DVQVEEVYDLQ--------KPIESPYGFIFLFRW-IEERRA 56 Query: 63 RKKQIEE-----LKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQF 117 R+K +E +K +E ++F +Q + NSC T L+ + N + + G L + Sbjct: 57 RRKIVETTAEIFVKDEEAISSIFFAQQVVPNSCATHALLSVLLNCNEN-NLQLGDTLSRL 115 Query: 118 LSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEG-------------QCRVDDKVNFHFIL 164 + T+ MSPE++ + AH++ A CR + FHF+ Sbjct: 116 KTHTKGMSPENKGLAIGNTPELACAHNSHAMPQARRRLERTGAGVSSCRFTGEA-FHFVS 174 Query: 165 FNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTER-----EQGEVRFSAVAL 219 F ++G L+ELDG P+P+NHG + D K R ER + ++RF+ +A+ Sbjct: 175 FVPINGQLFELDGLKPYPMNHGGWEDSEDWTD--KFRRVMAERLGIATGEQDIRFNLMAV 232 Query: 220 C 220 Sbjct: 233 V 233 >6CGA-A nrPDB Length = 365 Score = 211 bits (538), Expect = 1e-55, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 40/241 (16%) Query: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPAC---ALLLLFPLTAQHENF 62 +E +P + +L G + +V L+ P + LF + Sbjct: 10 LESDPGLFTLLLKDFGCH-DVQVEEVYDLQ--------KPIESPYGFIFLFRW-IEERRA 59 Query: 63 RKKQIEE-----LKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQF 117 R+K +E +K +E ++F +Q + NSC T L+ + N + + G L + Sbjct: 60 RRKIVETTAEIFVKDEEAISSIFFAQQVVPNSCATHALLSVLLNCNEN-NLQLGDTLSRL 118 Query: 118 LSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEG-------------QCRVDDKVNFHFIL 164 + T+ MSPE++ + AH++ A CR + FHF+ Sbjct: 119 KTHTKGMSPENKGLAIGNTPELACAHNSHAMPQARRRLERTGAGVSSCRFTGEA-FHFVS 177 Query: 165 FNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTER-----EQGEVRFSAVAL 219 F ++G L+ELDG P+P+NHG + D K R ER + ++RF+ +A+ Sbjct: 178 FVPINGQLFELDGLKPYPMNHGGWEDSEDWTD--KFRRVMAERLGIATGEQDIRFNLMAV 235 Query: 220 C 220 Sbjct: 236 V 236 >1CMX-A nrPDB Length = 235 Score = 188 bits (476), Expect = 2e-48, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 27/232 (11%) Query: 5 PMEINPEMLNKVLSRLGVAGQWRFVDVLGL-EEESLGSVPAPACALLLLFPLTAQHENFR 63 P+E NPE+ +LG+ +W + D+ L E E L +P P A++LLFP+ Sbjct: 10 PIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPIN------E 63 Query: 64 KKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQF-LSETE 122 ++ + S V + KQ++ N+CG ++H+++NNQ L E GS L F S+++ Sbjct: 64 DRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLL--EPGSDLDNFLKSQSD 121 Query: 123 KMSPEDRAKCFEKN--------EAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYE 174 S ++R + E +Q ++ + D N H+I + +G ++E Sbjct: 122 TSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATAD--TNLHYITYVEENGGIFE 179 Query: 175 LDGRM-PFPVNHGASS-EDTLLKDAAKVCREFTER-----EQGEVRFSAVAL 219 LDGR P+ G S T L + V E+ + F+ + L Sbjct: 180 LDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGL 231 >5D68-A nrPDB Length = 486 Score = 30.5 bits (67), Expect = 0.67, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 167 NVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAV 217 D H+ + GR P+N ++ ++AAK+ +E + +VR + Sbjct: 129 ETDRHITDQQGRS--PLNICEENKQNNWEEAAKLLKEAINKPYEKVRIYRM 177 >3P5B-L nrPDB Length = 400 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 4/46 (8%) Query: 157 KVNFHFILFNNVDGH----LYELDGRMPFPVNHGASSEDTLLKDAA 198 H I +V+G + E + R+ P + + D Sbjct: 264 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 309 >3M0C-C nrPDB Length = 791 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 4/46 (8%) Query: 157 KVNFHFILFNNVDGH----LYELDGRMPFPVNHGASSEDTLLKDAA 198 H I +V+G + E + R+ P + + D Sbjct: 576 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 621 >1N7D-A nrPDB Length = 699 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 4/46 (8%) Query: 157 KVNFHFILFNNVDGH----LYELDGRMPFPVNHGASSEDTLLKDAA 198 H I +V+G + E + R+ P + + D Sbjct: 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 603 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.307 0.129 0.322 Lambda K H 0.267 0.0392 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,406,010 Number of Sequences: 36641 Number of extensions: 257113 Number of successful extensions: 757 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 673 Number of HSP's gapped (non-prelim): 35 length of query: 223 length of database: 10,336,785 effective HSP length: 93 effective length of query: 130 effective length of database: 6,929,172 effective search space: 900792360 effective search space used: 900792360 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 57 (26.6 bits)