BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P09172
(617 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4ZEL-A nrPDB 1210 0.0
3MIC-A nrPDB 100 2e-21
5WM0-A nrPDB 100 3e-21
1K1Y-A nrPDB 30 2.3
5Z96-A nrPDB 30 3.2
6D6Q-K nrPDB 29 4.6
6G1K-A nrPDB 29 4.7
>4ZEL-A nrPDB
Length = 578
Score = 1210 bits (3131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/578 (100%), Positives = 578/578 (100%)
Query: 40 SAPRESPLPYHIPLDPEGSLELSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENAD 99
SAPRESPLPYHIPLDPEGSLELSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENAD
Sbjct: 1 SAPRESPLPYHIPLDPEGSLELSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENAD 60
Query: 100 LVVLWTDGDTAYFADAWSDQKGQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDY 159
LVVLWTDGDTAYFADAWSDQKGQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDY
Sbjct: 61 LVVLWTDGDTAYFADAWSDQKGQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDY 120
Query: 160 LIEDGTVHLVYGILEEPFRSLEAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAP 219
LIEDGTVHLVYGILEEPFRSLEAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAP
Sbjct: 121 LIEDGTVHLVYGILEEPFRSLEAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAP 180
Query: 220 NIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHF 279
NIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHF
Sbjct: 181 NIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHF 240
Query: 280 SGPCDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLV 339
SGPCDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLV
Sbjct: 241 SGPCDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLV 300
Query: 340 IEGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLAL 399
IEGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLAL
Sbjct: 301 IEGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLAL 360
Query: 400 PPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPG 459
PPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPG
Sbjct: 361 PPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPG 420
Query: 460 DVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLI 519
DVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLI
Sbjct: 421 DVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLI 480
Query: 520 NRFNNEDVCTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNL 579
NRFNNEDVCTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNL
Sbjct: 481 NRFNNEDVCTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNL 540
Query: 580 QPLPKVISTLEEPTPQCPTSQGRSPAGPTVVSIGGGKG 617
QPLPKVISTLEEPTPQCPTSQGRSPAGPTVVSIGGGKG
Sbjct: 541 QPLPKVISTLEEPTPQCPTSQGRSPAGPTVVSIGGGKG 578
>3MIC-A nrPDB
Length = 314
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 136/304 (44%), Gaps = 33/304 (10%)
Query: 205 PELPSDAC--TMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVH 262
P P DA ++++ P + P + TY+C LP +I ++P + + VH
Sbjct: 11 PVTPLDASDFALDIRMPGVT-PKESDTYFCMSMRLPVD-EEAFVIDFKP---RASMDTVH 65
Query: 263 HMEVFQCAPEMDSVPHFSGP---CDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAF 319
HM +F C ++P +G CD D+ N +L AWA A P+ G
Sbjct: 66 HMLLFGC-----NMPSSTGSYWFCDEGTCTDKAN----ILYAWARNAPPTRLPKGVGFRV 116
Query: 320 GGPGSSRYLRLEVHYHNPLVI-EGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIP 378
GG S+Y L+VHY + + D SG+ ++ T + AG+ + V T IP
Sbjct: 117 GGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMSVDT---VIP 173
Query: 379 PRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDN 438
P E D Q + P +H+FA ++HTH G+ V VR+G +W ++ + N
Sbjct: 174 PGEKVV-----NADISCQYKMYP--MHVFAYRVHTHHLGKVVSGYRVRNG-QWTLIGRQN 225
Query: 439 HYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQT 498
P Q ++ V V GD+L C + E R AT G +EMC Y+ YY +
Sbjct: 226 PQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEA 283
Query: 499 QLEL 502
+ L
Sbjct: 284 KYAL 287
>5WM0-A nrPDB
Length = 976
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 136/304 (44%), Gaps = 33/304 (10%)
Query: 205 PELPSDAC--TMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVH 262
P P DA ++++ P + P + TY+C LP +I ++P + + VH
Sbjct: 53 PVTPLDASDFALDIRMPGV-TPKESDTYFCMSMRLPVD-EEAFVIDFKP---RASMDTVH 107
Query: 263 HMEVFQCAPEMDSVPHFSGP---CDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAF 319
HM +F C ++P +G CD D+ N +L AWA A P+ G
Sbjct: 108 HMLLFGC-----NMPSSTGSYWFCDEGTCTDKAN----ILYAWARNAPPTRLPKGVGFRV 158
Query: 320 GGPGSSRYLRLEVHYHNPLVI-EGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIP 378
GG S+Y L+VHY + + D SG+ ++ T + AG+ + V T IP
Sbjct: 159 GGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMSVDT---VIP 215
Query: 379 PRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDN 438
P E D Q + P +H+FA ++HTH G+ V VR+G +W ++ + N
Sbjct: 216 PGEKVV-----NADISCQYKMYP--MHVFAYRVHTHHLGKVVSGYRVRNG-QWTLIGRQN 267
Query: 439 HYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQT 498
P Q ++ V V GD+L C + E R AT G +EMC Y+ YY +
Sbjct: 268 PQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEA 325
Query: 499 QLEL 502
+ L
Sbjct: 326 KYAL 329
>1K1Y-A nrPDB
Length = 659
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 264 MEVFQCAPEMDSVPHFSGPC---DSKMKPDRLNYCRHVLAAWALG--AKAFYYPEEAGLA 318
ME+ + PEM HFSGP + KPD L+ R ++ L FY P A +
Sbjct: 35 MEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAI- 93
Query: 319 FGGPGSSRYLRLEV 332
P R +++E+
Sbjct: 94 ---PKEDRLVQIEM 104
>5Z96-A nrPDB
Length = 755
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKV-- 585
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 586 --ISTLEEPTPQC 596
S EE + QC
Sbjct: 236 EFKSEYEELSRQC 248
>6D6Q-K nrPDB
Length = 960
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 183 INGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAP 219
++ S LQ R+ L++P IP +P+D M++ P
Sbjct: 915 LDSSNLQHQKIRMSLVEPQIPGISIPTDTSNMDLNGP 951
>6G1K-A nrPDB
Length = 921
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVIS 587
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV +
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 588 TL----EEPTPQC 596
EE + QC
Sbjct: 236 EFKAEYEELSHQC 248
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4ZEL-A nrPDB 1153 0.0
5WM0-A nrPDB 425 e-119
3MIC-A nrPDB 425 e-119
Sequences not found previously or not previously below threshold:
6D6Q-K nrPDB 31 1.5
5Z96-A nrPDB 31 1.6
6G1K-A nrPDB 30 3.1
3VR3-D nrPDB 30 3.2
CONVERGED!
>4ZEL-A nrPDB
Length = 578
Score = 1153 bits (2982), Expect = 0.0, Method: Composition-based stats.
Identities = 578/578 (100%), Positives = 578/578 (100%)
Query: 40 SAPRESPLPYHIPLDPEGSLELSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENAD 99
SAPRESPLPYHIPLDPEGSLELSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENAD
Sbjct: 1 SAPRESPLPYHIPLDPEGSLELSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENAD 60
Query: 100 LVVLWTDGDTAYFADAWSDQKGQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDY 159
LVVLWTDGDTAYFADAWSDQKGQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDY
Sbjct: 61 LVVLWTDGDTAYFADAWSDQKGQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDY 120
Query: 160 LIEDGTVHLVYGILEEPFRSLEAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAP 219
LIEDGTVHLVYGILEEPFRSLEAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAP
Sbjct: 121 LIEDGTVHLVYGILEEPFRSLEAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAP 180
Query: 220 NIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHF 279
NIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHF
Sbjct: 181 NIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHF 240
Query: 280 SGPCDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLV 339
SGPCDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLV
Sbjct: 241 SGPCDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLV 300
Query: 340 IEGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLAL 399
IEGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLAL
Sbjct: 301 IEGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLAL 360
Query: 400 PPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPG 459
PPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPG
Sbjct: 361 PPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPG 420
Query: 460 DVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLI 519
DVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLI
Sbjct: 421 DVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLI 480
Query: 520 NRFNNEDVCTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNL 579
NRFNNEDVCTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNL
Sbjct: 481 NRFNNEDVCTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNL 540
Query: 580 QPLPKVISTLEEPTPQCPTSQGRSPAGPTVVSIGGGKG 617
QPLPKVISTLEEPTPQCPTSQGRSPAGPTVVSIGGGKG
Sbjct: 541 QPLPKVISTLEEPTPQCPTSQGRSPAGPTVVSIGGGKG 578
>5WM0-A nrPDB
Length = 976
Score = 425 bits (1093), Expect = e-119, Method: Composition-based stats.
Identities = 88/304 (28%), Positives = 136/304 (44%), Gaps = 33/304 (10%)
Query: 205 PELPSDAC--TMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVH 262
P P DA ++++ P + P + TY+C LP +I ++P + + VH
Sbjct: 53 PVTPLDASDFALDIRMPGVT-PKESDTYFCMSMRLPVD-EEAFVIDFKP---RASMDTVH 107
Query: 263 HMEVFQCAPEMDSVPHFSGP---CDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAF 319
HM +F C ++P +G CD D+ N +L AWA A P+ G
Sbjct: 108 HMLLFGC-----NMPSSTGSYWFCDEGTCTDKAN----ILYAWARNAPPTRLPKGVGFRV 158
Query: 320 GGPGSSRYLRLEVHYHNPLVI-EGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIP 378
GG S+Y L+VHY + + D SG+ ++ T + AG+ + V T IP
Sbjct: 159 GGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMSVDT---VIP 215
Query: 379 PRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDN 438
P E D Q + P +H+FA ++HTH G+ V VR+G +W ++ + N
Sbjct: 216 PGEKVV-----NADISCQYKMYP--MHVFAYRVHTHHLGKVVSGYRVRNG-QWTLIGRQN 267
Query: 439 HYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQT 498
P Q ++ V V GD+L C + E R AT G +EMC Y+ YY +
Sbjct: 268 PQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEA 325
Query: 499 QLEL 502
+ L
Sbjct: 326 KYAL 329
>3MIC-A nrPDB
Length = 314
Score = 425 bits (1093), Expect = e-119, Method: Composition-based stats.
Identities = 88/304 (28%), Positives = 136/304 (44%), Gaps = 33/304 (10%)
Query: 205 PELPSDAC--TMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYEPIVTKGNEALVH 262
P P DA ++++ P + P + TY+C LP +I ++P + + VH
Sbjct: 11 PVTPLDASDFALDIRMPGVT-PKESDTYFCMSMRLPVD-EEAFVIDFKP---RASMDTVH 65
Query: 263 HMEVFQCAPEMDSVPHFSGP---CDSKMKPDRLNYCRHVLAAWALGAKAFYYPEEAGLAF 319
HM +F C ++P +G CD D+ N +L AWA A P+ G
Sbjct: 66 HMLLFGC-----NMPSSTGSYWFCDEGTCTDKAN----ILYAWARNAPPTRLPKGVGFRV 116
Query: 320 GGPGSSRYLRLEVHYHNPLVI-EGRNDSSGIRLYYTAKLRRFNAGIMELGLVYTPVMAIP 378
GG S+Y L+VHY + + D SG+ ++ T + AG+ + V T IP
Sbjct: 117 GGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMSVDT---VIP 173
Query: 379 PRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKVVTVLVRDGREWEIVNQDN 438
P E D Q + P +H+FA ++HTH G+ V VR+G +W ++ + N
Sbjct: 174 PGEKVV-----NADISCQYKMYP--MHVFAYRVHTHHLGKVVSGYRVRNG-QWTLIGRQN 225
Query: 439 HYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEEMCVNYVHYYPQT 498
P Q ++ V V GD+L C + E R AT G +EMC Y+ YY +
Sbjct: 226 PQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEA 283
Query: 499 QLEL 502
+ L
Sbjct: 284 KYAL 287
>6D6Q-K nrPDB
Length = 960
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 183 INGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAP 219
++ S LQ R+ L++P IP +P+D M++ P
Sbjct: 915 LDSSNLQHQKIRMSLVEPQIPGISIPTDTSNMDLNGP 951
>5Z96-A nrPDB
Length = 755
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKV-- 585
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 586 --ISTLEEPTPQC 596
S EE + QC
Sbjct: 236 EFKSEYEELSRQC 248
>6G1K-A nrPDB
Length = 921
Score = 30.1 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 528 CTCPQASVSQQFTSVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVIS 587
C C + S S+ + ++ KAL S + I++ FQ W LQ L KV +
Sbjct: 176 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVEN 235
Query: 588 TL----EEPTPQC 596
EE + QC
Sbjct: 236 EFKAEYEELSHQC 248
>3VR3-D nrPDB
Length = 465
Score = 30.1 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 234 IKELPKGFSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHFS-----GPCDSKMK 288
I +P+ H I +T+G L + P +D +P S G K +
Sbjct: 310 ILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTR 369
Query: 289 PDRLNYCRHVLAAWALGAKA 308
D + AA+A G +A
Sbjct: 370 EDHAATMNQLFAAYAQGKQA 389
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.317 0.132 0.394
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,081,897
Number of Sequences: 36641
Number of extensions: 1177610
Number of successful extensions: 2462
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2422
Number of HSP's gapped (non-prelim): 16
length of query: 617
length of database: 10,336,785
effective HSP length: 103
effective length of query: 514
effective length of database: 6,562,762
effective search space: 3373259668
effective search space used: 3373259668
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)