BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P09119 (513 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5V8F-9 nrPDB 1048 0.0 4XGC-A nrPDB 102 5e-22 5UJM-A nrPDB 97 1e-20 5UJ7-A nrPDB 84 2e-16 5V8F-A nrPDB 69 7e-12 2QBY-A nrPDB 52 6e-07 2V1U-A nrPDB 49 6e-06 2QBY-B nrPDB 35 0.066 2CHG-A nrPDB 34 0.14 2CHV-A nrPDB 34 0.15 1SXJ-C nrPDB 34 0.19 4XGU-A nrPDB 33 0.31 1T9M-A nrPDB 31 1.1 1FNN-A nrPDB 30 2.1 4M4W-J nrPDB 30 2.3 3PVS-A nrPDB 30 2.4 1Y63-A nrPDB 30 2.6 1ELJ-A nrPDB 30 2.7 6AZ0-A nrPDB 29 4.4 3JCM-G nrPDB 28 9.6 5UJ7-C nrPDB 28 9.9 >5V8F-9 nrPDB Length = 513 Score = 1048 bits (2709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/513 (100%), Positives = 513/513 (100%) Query: 1 MSAIPITPTKRIRRNLFDDAPATPPRPLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKA 60 MSAIPITPTKRIRRNLFDDAPATPPRPLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKA Sbjct: 1 MSAIPITPTKRIRRNLFDDAPATPPRPLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKA 60 Query: 61 LLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM 120 LLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM Sbjct: 61 LLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM 120 Query: 121 IIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSS 180 IIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSS Sbjct: 121 IIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSS 180 Query: 181 IFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVR 240 IFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVR Sbjct: 181 IFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVR 240 Query: 241 TILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV 300 TILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV Sbjct: 241 TILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV 300 Query: 301 IQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSL 360 IQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSL Sbjct: 301 IQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSL 360 Query: 361 NSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCT 420 NSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCT Sbjct: 361 NSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCT 420 Query: 421 IIQSLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCKG 480 IIQSLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCKG Sbjct: 421 IIQSLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCKG 480 Query: 481 KTKRFVDKIDVDLDMREFYDEMTKISILKPFLH 513 KTKRFVDKIDVDLDMREFYDEMTKISILKPFLH Sbjct: 481 KTKRFVDKIDVDLDMREFYDEMTKISILKPFLH 513 >4XGC-A nrPDB Length = 393 Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 142/298 (47%), Gaps = 60/298 (20%) Query: 58 TKALLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQ 117 +K+ LQ + E ++++ +LP R E+E + FL I + +Y++G PGTGKTA Sbjct: 17 SKSELQLAREQLHVSVVPKSLPCREREFENIYAFLEGKIQDQCGGCMYVSGVPGTGKTAT 76 Query: 118 LDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLS-WFELPDGRLESVAVTSINCISLG 176 + +IR LQ ++ ELP + IN + L Sbjct: 77 VTGVIR------------------------TLQRMAKQNELP-----AFEYLEINGMRLT 107 Query: 177 EPSSIFQKIFDSFQDLNGPTLQIKNMQHL--QKFLEPYHKKTTFVVVLDEMDRLLHANTS 234 EP + +I+ + L G T+ + L ++F P ++ T V+++DE+D L + Sbjct: 108 EPRQAYVQIY---KQLTGKTVSWEQAHALLEKRFTTPAPRRVTTVLLVDELDILCN---- 160 Query: 235 ETQSVRTILELFLLAKLPTVS---FVLIGMANSLDMKDRFL-----SRLNLDRGLLPQTI 286 Q V ++ L PT S V++ +AN++D+ +R L SRL L R + Sbjct: 161 RRQDV-----VYNLLDWPTKSAAKLVVVTIANTMDLPERLLMGKVTSRLGLTR------L 209 Query: 287 VFQPYTAEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEI 344 FQPY+ +Q+ EIV ++ T F+ A++ A+K A +GD R+ D+ R + EI Sbjct: 210 TFQPYSHKQLQEIVTARLGGSET--FKGEAVQLVARKVAAVSGDARRALDICRRATEI 265 >5UJM-A nrPDB Length = 522 Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 103/445 (23%), Positives = 194/445 (43%), Gaps = 89/445 (20%) Query: 48 QFGSQSIFLRTKALLQKSSEL------VNLNSSDGALPARTAEYEQVMNFLAKAISEHRS 101 Q G+ I R+ A + +S L +++++ +LP R E++ + NF+ + +H Sbjct: 129 QIGAPQIRSRSLAAQEPASVLEEARLRLHVSAVPESLPCREQEFQDIYNFVESKLLDHTG 188 Query: 102 DSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGR 161 +YI+G PGTGKTA + +IR Q+ ++ DV P Q + Sbjct: 189 GCMYISGVPGTGKTATVHEVIRCLQQA-------AQANDV-----PPFQYIE-------- 228 Query: 162 LESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHL--QKFLEPYHKKTTFV 219 +N + L EP ++ +I Q L G + L ++F + T V Sbjct: 229 --------VNGMKLTEPHQVYVQIL---QKLTGQKATANHAAELLAKQFCTRGSPQETTV 277 Query: 220 VVLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFL-----SR 274 +++DE+D L T + LF V++ +AN++D+ +R + SR Sbjct: 278 LLVDELDILW------THKQDIMYNLFDWPTHKEARLVVLAIANTMDLPERIMMNRVSSR 331 Query: 275 LNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKL 334 L L R + FQPYT Q+ +I+ ++ L F+ AI+ A+K A +GD R+ Sbjct: 332 LGLTR------MCFQPYTYSQLQQILRSRLKHLKA--FEDDAIQLVARKVAALSGDARRC 383 Query: 335 FDVLRGSIEIYELEKRFLLSPTRGSLNSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVF 394 D+ R + EI E S Q P +P + S + + ++F Sbjct: 384 LDICRRATEICEF--------------SQQKPDSPGLVTIAHS---------MEAVDEMF 420 Query: 395 SKFVNNNSTRTRIAKLNIQQKLILCTIIQSLKLNS--DATIDESFDHYIKAITKTDTLAP 452 S +S T I ++ ++ L I+ + + +AT + + ++ A+ + + L Sbjct: 421 S-----SSYITAIKNSSVLEQSFLRAILAEFRRSGLEEATFQQIYSQHV-ALCRMEGLPY 474 Query: 453 LQRNEFLEICTILETCGLVSIKKTK 477 +E + +C+ L +C L+ ++ ++ Sbjct: 475 PTMSETMAVCSHLGSCRLLLVEPSR 499 >5UJ7-A nrPDB Length = 391 Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 95/431 (22%), Positives = 185/431 (42%), Gaps = 91/431 (21%) Query: 60 ALLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLD 119 ++L+++ +++++ +LP R E++ + NF+ + +H +YI+G PGTGKTA + Sbjct: 16 SVLEEARLRLHVSAVPESLPCREQEFQDIYNFVESKLLDHTGGCMYISGVPGTGKTATVH 75 Query: 120 MIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPS 179 +IR Q+ ++ DV P Q + +N + L EP Sbjct: 76 EVIRCLQQA-------AQANDV-----PPFQYIE----------------VNGMKLTEPH 107 Query: 180 SIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYH------KKTTFVVVLDEMDRLLHANT 233 ++ +I Q L G Q H + L ++TT ++V + H Sbjct: 108 QVYVQIL---QKLTG---QKATANHAAELLAKQFCTRGSPQETTVLLVDELDLLWTHKQD 161 Query: 234 SETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFL-----SRLNLDRGLLPQTIVF 288 + LF V++ +AN++D+ +R + SRL L R + F Sbjct: 162 -------IMYNLFDWPTHKEARLVVLAIANTMDLPERIMMNRVSSRLGLTR------MCF 208 Query: 289 QPYTAEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELE 348 QPYT Q+ +I+ ++ L F+ AI+ A+K A +GD R+ D+ R + EI E Sbjct: 209 QPYTYSQLQQILRSRLKHLKA--FEDDAIQLVARKVAALSGDARRCLDICRRATEICEF- 265 Query: 349 KRFLLSPTRGSLNSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIA 408 S Q P +P + S + + ++FS +S T I Sbjct: 266 -------------SQQKPDSPGLVTIAHS---------MEAVDEMFS-----SSYITAIK 298 Query: 409 KLNIQQKLILCTIIQSLKLNS--DATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILE 466 ++ ++ L I+ + + +AT + + ++ A+ + + L +E + +C+ L Sbjct: 299 NSSVLEQSFLRAILAEFRRSGLEEATFQQIYSQHV-ALCRMEGLPYPTMSETMAVCSHLG 357 Query: 467 TCGLVSIKKTK 477 +C L+ ++ ++ Sbjct: 358 SCRLLLVEPSR 368 >5V8F-A nrPDB Length = 913 Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 79/342 (23%), Positives = 142/342 (41%), Gaps = 90/342 (26%) Query: 52 QSIFLRTKALLQKS---SELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITG 108 ++IF + K L S E++ + LPAR E+ + AI + ++Y+ G Sbjct: 420 ETIFSKVKKQLNSSYVKEEILKSANFQDYLPARENEFASIYLSAYSAIESDSATTIYVAG 479 Query: 109 PPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVT 168 PG GKT + +R+ + L LS S R E+PD Sbjct: 480 TPGVGKT----LTVREVVKEL-LSSSAQR------------------EIPD-----FLYV 511 Query: 169 SINCISLGEPSSIFQKIFDSFQDLNGPTL-QIKNMQHLQKFLE--PYHKKTTFVVVLDEM 225 IN + + +P+ ++ +++ ++G L +M+ L+ + + P +KK T VV+LDE+ Sbjct: 512 EINGLKMVKPTDCYETLWNK---VSGERLTWAASMESLEFYFKRVPKNKKKTIVVLLDEL 568 Query: 226 DRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFL-----SRLNLDRG 280 D ++ T+S + F ++I +AN++D+ +R L SR+ R Sbjct: 569 DAMV------TKSQDIMYNFFNWTTYENAKLIVIAVANTMDLPERQLGNKITSRIGFTR- 621 Query: 281 LLPQTIVFQPYTAEQMYEIVIQKMSSL----------------------PTIIFQPM--- 315 I+F YT E++ I+ ++ L T + Q + Sbjct: 622 -----IMFTGYTHEELKNIIDLRLKGLNDSFFYVDTKTGNAILIDAAGNDTTVKQTLPED 676 Query: 316 -----------AIKFAAKKCAGNTGDLRKLFDVLRGSIEIYE 346 AI+ A++K A +GD R+ V + + EI E Sbjct: 677 VRKVRLRMSADAIEIASRKVASVSGDARRALKVCKRAAEIAE 718 >2QBY-A nrPDB Length = 386 Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 97/433 (22%), Positives = 172/433 (39%), Gaps = 96/433 (22%) Query: 78 LPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPR 137 LP R + ++ + LA E + ++++I G GTGKTA + ++ + + Sbjct: 22 LPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL------- 74 Query: 138 SKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGP-- 195 G+ + V IN + P + + +S D+ P Sbjct: 75 ----------------------GKFKHV---YINTRQIDTPYRVLADLLESL-DVKVPFT 108 Query: 196 TLQIKNM-QHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPT- 253 L I + + L K + Y + V+VLDE+D + + L+ L+++ + Sbjct: 109 GLSIAELYRRLVKAVRDYGSQV--VIVLDEIDAFVKKYNDDI--------LYKLSRINSE 158 Query: 254 -----VSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQK--MSS 306 +SF IG+ N + D R+ L + I+F PY AE++ +I+ ++ M+ Sbjct: 159 VNKSKISF--IGITNDVKFVDLLDPRVK--SSLSEEEIIFPPYNAEELEDILTKRAQMAF 214 Query: 307 LPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSLNSAQVP 366 P ++ + IK A A GD R+ D+LR S EI E K Sbjct: 215 KPGVLPDNV-IKLCAALAAREHGDARRALDLLRVSGEIAERMK----------------- 256 Query: 367 LTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCTIIQ-SL 425 + VK+ Y Y+AK + + + R I L KL+L ++ S Sbjct: 257 ----DTKVKEEYV---------YMAK---EEIERDRVRDIILTLPFHSKLVLMAVVSISS 300 Query: 426 KLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCK--GKTK 483 + N +T ++ Y+ K A QR +I L+ G+++ K GKTK Sbjct: 301 EENVVSTTGAVYETYLNICKKLGVEAVTQRR-VSDIINELDMVGILTAKVVNRGRYGKTK 359 Query: 484 RFVDKIDVDLDMR 496 +D ++ +R Sbjct: 360 EIGLAVDKNIIVR 372 >2V1U-A nrPDB Length = 387 Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/281 (23%), Positives = 110/281 (39%), Gaps = 60/281 (21%) Query: 78 LPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQ---KFQSLPLSLS 134 LP R AE ++ LA A+ + + + G GTGKTA +++R+ + SL + L Sbjct: 21 LPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGV-LV 79 Query: 135 TPRSKDVLRHTNPNLQNLSWFELPDGRLESVAV-TSINCISLGEPSSIFQKIFDSFQDLN 193 P + P + + E+V V +S+GE +++++ L Sbjct: 80 KPIYVNARHRETP-------YRVASAIAEAVGVRVPFTGLSVGE---VYERLVKRLSRLR 129 Query: 194 GPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMD---------RLLHANTSETQSVRTILE 244 G +++VLDE+D LL+ T Q + Sbjct: 130 G----------------------IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD--- 164 Query: 245 LFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV-IQK 303 V L+G+ NSL + R+ G + +VF PYTA Q+ +I+ + Sbjct: 165 --------RVWVSLVGITNSLGFVENLEPRVKSSLGEV--ELVFPPYTAPQLRDILETRA 214 Query: 304 MSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEI 344 + + P + A A GD R+ D+LR + EI Sbjct: 215 EEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 >2QBY-B nrPDB Length = 384 Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust. Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 27/221 (12%) Query: 125 KFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGE-PSSIFQ 183 KF +L L L+ V ++ ++ + D + V +NC +G P ++ Sbjct: 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKK---EDEEYKDVKQAYVNCREVGGTPQAVLS 101 Query: 184 KIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTIL 243 + + P I +++ K ++ + ++ LDE+D L+ + I+ Sbjct: 102 SLAGKLTGFSVPKHGINLGEYIDK-IKNGTRNIRAIIYLDEVDTLVKRRGGD------IV 154 Query: 244 ELFLLAKLPTVSFVLIGMANSLDMKD----RFLSRLNLDRGLLPQTIVFQPYTAEQMYEI 299 LL +S ++I +N ++++D R LS L +++F+PY AEQ+ + Sbjct: 155 LYQLLRSDANISVIMI--SNDINVRDYMEPRVLSSLG-------PSVIFKPYDAEQL-KF 204 Query: 300 VIQKMSSLPTI--IFQPMAIKFAAKKCAGNTGDLRKLFDVL 338 ++ K + I + + + A A GD RK ++L Sbjct: 205 ILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLL 245 >2CHG-A nrPDB Length = 226 Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 86 EQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQS------LPLSLSTPRSK 139 ++V+ L + L +GPPGTGKTA + R F + ++ S R Sbjct: 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 Query: 140 DVLRH 144 DV+RH Sbjct: 83 DVVRH 87 >2CHV-A nrPDB Length = 319 Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 86 EQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQS------LPLSLSTPRSK 139 ++V+ L + L +GPPGTGKTA + R F + ++ S R Sbjct: 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 Query: 140 DVLRH 144 DV+RH Sbjct: 83 DVVRH 87 >1SXJ-C nrPDB Length = 340 Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%) Query: 87 QVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQS------LPLSLSTPRSKD 140 +V+ + K + E + L GPPGTGKT+ + + R+ + L L+ S R D Sbjct: 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID 91 Query: 141 VLRH 144 V+R+ Sbjct: 92 VVRN 95 >4XGU-A nrPDB Length = 424 Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 24/89 (26%) Query: 104 LYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLE 163 + +TGPPGTGKT+ + + Q L + ++ SK V+ N + WF Sbjct: 175 ILLTGPPGTGKTS----LCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWF-------- 222 Query: 164 SVAVTSINCISLGEPSSIFQKIFDSFQDL 192 E + QK+FD +L Sbjct: 223 ------------SESGKLVQKMFDQIDEL 239 >1T9M-A nrPDB Length = 214 Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 16/92 (17%) Query: 48 QFGSQSIFLRTKALLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYIT 107 + G + + T A QK EL + G L R + + ++N A+ + + R+D+ +++ Sbjct: 71 ELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLS 130 Query: 108 GPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSK 139 P +Q+ P+S+++ +S+ Sbjct: 131 RP----------------YQTHPMSIASRQSE 146 >1FNN-A nrPDB Length = 389 Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 11/74 (14%) Query: 276 NLD---RGLLPQTIV-FQPYTAEQMYEIVIQKM------SSLPTIIFQPMA-IKFAAKKC 324 NLD RG++ + ++ F PYT +Q+++I++ + S I Q +A I A Sbjct: 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 Query: 325 AGNTGDLRKLFDVL 338 N GD R D+L Sbjct: 234 DTNRGDARLAIDIL 247 >4M4W-J nrPDB Length = 317 Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 21/43 (48%) Query: 79 PARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMI 121 P+R A ++ V +FL + LY+ G G GKT L I Sbjct: 139 PSRLAMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAI 181 >3PVS-A nrPDB Length = 447 Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 92 LAKAISEHRSDSLYITGPPGTGKTAQLDMIIR 123 L +AI S+ + GPPGTGKT ++I R Sbjct: 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR 72 >1Y63-A nrPDB Length = 184 Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Query: 103 SLYITGPPGTGKTAQLDMIIRQ--KFQSLPLS 132 ++ ITG PGTGKT+ +MI + FQ L + Sbjct: 12 NILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 >1ELJ-A nrPDB Length = 381 Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Query: 357 RGSLNSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKV---------FSKFVNNNSTRTRI 407 + +N VPL P K+ +P P G + L Y A F+K++ + + Sbjct: 237 KAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKT 296 Query: 408 AKLNIQQKLILCTIIQSLKLNSDATI 433 L + +L ++ ++ +D I Sbjct: 297 LALELGYIPVLTKVLDDPEIKNDPVI 322 >6AZ0-A nrPDB Length = 439 Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%) Query: 76 GALPARTAEYEQVMNFLA-----KAISEHRSDSLYITGPPGTGKT 115 G AR AE E++++FL +++ + +TGPPGTGKT Sbjct: 7 GCDEAR-AELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKT 50 >3JCM-G nrPDB Length = 899 Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 11/132 (8%) Query: 186 FDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILEL 245 F +QDLN ++ N + L+ F P K F + ++ ++ H+ + S T L Sbjct: 642 FLRYQDLNEEAIKFLNERCLKSF--PICHK--FFL---QLGQIYHSMGNIEMSRETYLSG 694 Query: 246 FLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLL--PQTIVFQPYTAEQMYEIVIQK 303 L + +V + + +D+K+ +R LDRGLL P ++F Y A+ EI + Sbjct: 695 TRLVPNCPLLWVSLSKIDEIDLKNPVRARSILDRGLLKNPDDVLF--YIAKIQMEIRLGN 752 Query: 304 MSSLPTIIFQPM 315 + ++ Q + Sbjct: 753 LDQAELLVTQAL 764 >5UJ7-C nrPDB Length = 436 Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust. Identities = 11/42 (26%), Positives = 23/42 (54%) Query: 83 AEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQ 124 +Y+ + L + S+S+ I GP G+GKT ++ +++ Sbjct: 42 VQYKHLSELLKRTALHGESNSVLIIGPRGSGKTMLINHALKE 83 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5V8F-9 nrPDB 701 0.0 5UJM-A nrPDB 409 e-114 5UJ7-A nrPDB 388 e-108 2QBY-A nrPDB 311 3e-85 4XGC-A nrPDB 277 6e-75 2V1U-A nrPDB 246 2e-65 5V8F-A nrPDB 237 1e-62 Sequences not found previously or not previously below threshold: 2QBY-B nrPDB 125 6e-29 1FNN-A nrPDB 67 2e-11 5UJ7-C nrPDB 54 1e-07 5V8F-D nrPDB 49 4e-06 4XGC-D nrPDB 48 1e-05 4XGC-E nrPDB 38 0.011 5C18-A nrPDB 36 0.030 2EWW-A nrPDB 36 0.043 2XSZ-D nrPDB 35 0.066 6MCK-A nrPDB 35 0.095 3PVS-A nrPDB 35 0.097 6B4I-E nrPDB 35 0.11 5KWA-A nrPDB 35 0.11 3HU1-A nrPDB 35 0.11 1SXJ-D nrPDB 35 0.12 5V8F-E nrPDB 34 0.13 4M4W-J nrPDB 34 0.14 1SXJ-A nrPDB 34 0.15 5VHP-E nrPDB 34 0.17 2X8A-A nrPDB 34 0.17 3CLM-A nrPDB 34 0.18 2XSZ-A nrPDB 34 0.18 3FMO-B nrPDB 33 0.22 3FHC-B nrPDB 33 0.23 6FWS-A nrPDB 33 0.26 6MSD-E nrPDB 33 0.34 2R65-A nrPDB 33 0.35 4D81-A nrPDB 33 0.38 1Y63-A nrPDB 33 0.44 5WDH-A nrPDB 32 0.57 4LJ8-A nrPDB 32 0.58 4LGM-A nrPDB 32 0.70 1YE8-A nrPDB 32 0.74 1IN6-A nrPDB 32 0.78 2CHG-A nrPDB 32 0.80 6AZ0-A nrPDB 31 0.86 1QVR-A nrPDB 31 0.95 4ON9-A nrPDB 31 0.98 1JNY-A nrPDB 31 0.98 5V7X-A nrPDB 31 1.1 2CHV-A nrPDB 31 1.1 2EYU-A nrPDB 31 1.1 4XGU-A nrPDB 31 1.3 4B3F-X nrPDB 31 1.3 6EF1-K nrPDB 31 1.4 6EF0-L nrPDB 31 1.5 3M6A-A nrPDB 31 1.5 5W3D-A nrPDB 31 1.5 1SXJ-C nrPDB 31 1.6 6EF0-H nrPDB 30 1.8 5WVI-K nrPDB 30 1.9 1SXJ-B nrPDB 30 2.0 3H4M-A nrPDB 30 2.1 4OZQ-A nrPDB 30 2.1 2OWM-A nrPDB 30 2.1 5G4G-A nrPDB 30 2.2 6FVU-L nrPDB 30 2.3 5Z3Q-B nrPDB 30 2.3 6EPG-B nrPDB 30 2.4 6ED3-A nrPDB 30 2.6 6EF3-H nrPDB 30 2.7 5WVI-L nrPDB 30 2.7 6E11-1 nrPDB 30 2.7 6QI8-A nrPDB 30 2.7 5VY8-A nrPDB 30 2.8 5UBV-A nrPDB 30 3.1 6AMN-A nrPDB 30 3.1 6EM8-A nrPDB 30 3.6 5EUL-A nrPDB 30 3.8 1TF2-A nrPDB 30 3.9 5D4W-A nrPDB 29 4.5 4HSE-A nrPDB 29 4.5 2GA8-A nrPDB 29 5.0 6HE4-H nrPDB 29 5.5 6HE9-H nrPDB 29 6.7 3BIC-A nrPDB 29 6.7 6MAT-A nrPDB 28 8.4 5VHF-B nrPDB 28 8.8 >5V8F-9 nrPDB Length = 513 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 513/513 (100%), Positives = 513/513 (100%) Query: 1 MSAIPITPTKRIRRNLFDDAPATPPRPLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKA 60 MSAIPITPTKRIRRNLFDDAPATPPRPLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKA Sbjct: 1 MSAIPITPTKRIRRNLFDDAPATPPRPLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKA 60 Query: 61 LLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM 120 LLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM Sbjct: 61 LLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM 120 Query: 121 IIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSS 180 IIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSS Sbjct: 121 IIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSS 180 Query: 181 IFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVR 240 IFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVR Sbjct: 181 IFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVR 240 Query: 241 TILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV 300 TILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV Sbjct: 241 TILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV 300 Query: 301 IQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSL 360 IQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSL Sbjct: 301 IQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSL 360 Query: 361 NSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCT 420 NSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCT Sbjct: 361 NSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCT 420 Query: 421 IIQSLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCKG 480 IIQSLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCKG Sbjct: 421 IIQSLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCKG 480 Query: 481 KTKRFVDKIDVDLDMREFYDEMTKISILKPFLH 513 KTKRFVDKIDVDLDMREFYDEMTKISILKPFLH Sbjct: 481 KTKRFVDKIDVDLDMREFYDEMTKISILKPFLH 513 >5UJM-A nrPDB Length = 522 Score = 409 bits (1051), Expect = e-114, Method: Composition-based stats. Identities = 102/445 (22%), Positives = 194/445 (43%), Gaps = 89/445 (20%) Query: 48 QFGSQSIFLRTKA------LLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRS 101 Q G+ I R+ A +L+++ +++++ +LP R E++ + NF+ + +H Sbjct: 129 QIGAPQIRSRSLAAQEPASVLEEARLRLHVSAVPESLPCREQEFQDIYNFVESKLLDHTG 188 Query: 102 DSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGR 161 +YI+G PGTGKTA + +IR Q+ ++ DV P Q Sbjct: 189 GCMYISGVPGTGKTATVHEVIRCLQQA-------AQANDV-----PPFQ----------- 225 Query: 162 LESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHL--QKFLEPYHKKTTFV 219 +N + L EP ++ +I Q L G + L ++F + T V Sbjct: 226 -----YIEVNGMKLTEPHQVYVQIL---QKLTGQKATANHAAELLAKQFCTRGSPQETTV 277 Query: 220 VVLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFL-----SR 274 +++DE+D L T + LF V++ +AN++D+ +R + SR Sbjct: 278 LLVDELDILW------THKQDIMYNLFDWPTHKEARLVVLAIANTMDLPERIMMNRVSSR 331 Query: 275 LNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKL 334 L L R + FQPYT Q+ +I+ ++ L F+ AI+ A+K A +GD R+ Sbjct: 332 LGLTR------MCFQPYTYSQLQQILRSRLKHLKA--FEDDAIQLVARKVAALSGDARRC 383 Query: 335 FDVLRGSIEIYELEKRFLLSPTRGSLNSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVF 394 D+ R + EI E S Q P +P + S + + ++F Sbjct: 384 LDICRRATEICEF--------------SQQKPDSPGLVTIAHS---------MEAVDEMF 420 Query: 395 SKFVNNNSTRTRIAKLNIQQKLILCTIIQSLKLNS--DATIDESFDHYIKAITKTDTLAP 452 S +S T I ++ ++ L I+ + + +AT + + ++ A+ + + L Sbjct: 421 S-----SSYITAIKNSSVLEQSFLRAILAEFRRSGLEEATFQQIYSQHV-ALCRMEGLPY 474 Query: 453 LQRNEFLEICTILETCGLVSIKKTK 477 +E + +C+ L +C L+ ++ ++ Sbjct: 475 PTMSETMAVCSHLGSCRLLLVEPSR 499 >5UJ7-A nrPDB Length = 391 Score = 388 bits (997), Expect = e-108, Method: Composition-based stats. Identities = 100/442 (22%), Positives = 192/442 (43%), Gaps = 89/442 (20%) Query: 51 SQSIFLRTKA------LLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSL 104 + I R+ A +L+++ +++++ +LP R E++ + NF+ + +H + Sbjct: 1 APQIRSRSLAAQEPASVLEEARLRLHVSAVPESLPCREQEFQDIYNFVESKLLDHTGGCM 60 Query: 105 YITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLES 164 YI+G PGTGKTA + +IR Q+ ++ DV P Q Sbjct: 61 YISGVPGTGKTATVHEVIRCLQQA-------AQANDV-----PPFQ-------------- 94 Query: 165 VAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHL--QKFLEPYHKKTTFVVVL 222 +N + L EP ++ +I Q L G + L ++F + T V+++ Sbjct: 95 --YIEVNGMKLTEPHQVYVQIL---QKLTGQKATANHAAELLAKQFCTRGSPQETTVLLV 149 Query: 223 DEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFL-----SRLNL 277 DE+D L T + LF V++ +AN++D+ +R + SRL L Sbjct: 150 DELDLLW------THKQDIMYNLFDWPTHKEARLVVLAIANTMDLPERIMMNRVSSRLGL 203 Query: 278 DRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDV 337 R + FQPYT Q+ +I+ ++ L F+ AI+ A+K A +GD R+ D+ Sbjct: 204 TR------MCFQPYTYSQLQQILRSRLKHLKA--FEDDAIQLVARKVAALSGDARRCLDI 255 Query: 338 LRGSIEIYELEKRFLLSPTRGSLNSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKF 397 R + EI E S Q P +P + S + + ++FS Sbjct: 256 CRRATEICEF--------------SQQKPDSPGLVTIAHS---------MEAVDEMFS-- 290 Query: 398 VNNNSTRTRIAKLNIQQKLILCTIIQSLKLNS--DATIDESFDHYIKAITKTDTLAPLQR 455 +S T I ++ ++ L I+ + + +AT + + ++ A+ + + L Sbjct: 291 ---SSYITAIKNSSVLEQSFLRAILAEFRRSGLEEATFQQIYSQHV-ALCRMEGLPYPTM 346 Query: 456 NEFLEICTILETCGLVSIKKTK 477 +E + +C+ L +C L+ ++ ++ Sbjct: 347 SETMAVCSHLGSCRLLLVEPSR 368 >2QBY-A nrPDB Length = 386 Score = 311 bits (797), Expect = 3e-85, Method: Composition-based stats. Identities = 95/454 (20%), Positives = 173/454 (38%), Gaps = 90/454 (19%) Query: 66 SELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQK 125 E + + LP R + ++ + LA E + ++++I G GTGKTA + ++ + Sbjct: 10 REYLLPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 Query: 126 FQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKI 185 + G+ + V IN + P + + Sbjct: 70 HKKFL-----------------------------GKFKHV---YINTRQIDTPYRVLADL 97 Query: 186 FDSFQDLNGP--TLQIKNM-QHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTI 242 +S D+ P L I + + L K + Y + V+VLDE+D + + Sbjct: 98 LESL-DVKVPFTGLSIAELYRRLVKAVRDYGSQV--VIVLDEIDAFVKKYNDDI------ 148 Query: 243 LELFLLAKLPT----VSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYE 298 L+ L+++ + IG+ N + D R+ L + I+F PY AE++ + Sbjct: 149 --LYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSS--LSEEEIIFPPYNAEELED 204 Query: 299 IVIQKMS-SLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTR 357 I+ ++ + + IK A A GD R+ D+LR S EI E K Sbjct: 205 ILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK-------- 256 Query: 358 GSLNSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLI 417 + VK+ Y Y+AK + + + R I L KL+ Sbjct: 257 -------------DTKVKEEYV---------YMAK---EEIERDRVRDIILTLPFHSKLV 291 Query: 418 LCTIIQ-SLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKT 476 L ++ S + N +T ++ Y+ K A QR +I L+ G+++ K Sbjct: 292 LMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRR-VSDIINELDMVGILTAKVV 350 Query: 477 KCK--GKTKRFVDKIDVDLDMREFYDEMTKISIL 508 GKTK +D ++ +R + ++ + L Sbjct: 351 NRGRYGKTKEIGLAVDKNIIVRSLIESDSRFADL 384 >4XGC-A nrPDB Length = 393 Score = 277 bits (709), Expect = 6e-75, Method: Composition-based stats. Identities = 94/445 (21%), Positives = 174/445 (39%), Gaps = 90/445 (20%) Query: 43 SPEKLQFGSQSIFLRTKALLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSD 102 SP Q +K+ LQ + E ++++ +LP R E+E + FL I + Sbjct: 2 SPSMQQRTDLPAKDSSKSELQLAREQLHVSVVPKSLPCREREFENIYAFLEGKIQDQCGG 61 Query: 103 SLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRL 162 +Y++G PGTGKTA + +IR + ELP Sbjct: 62 CMYVSGVPGTGKTATVTGVIRTLQR-----------------------MAKQNELP---- 94 Query: 163 ESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHL--QKFLEPYHKKTTFVV 220 + IN + L EP + +I+ L G T+ + L ++F P ++ T V+ Sbjct: 95 -AFEYLEINGMRLTEPRQAYVQIYK---QLTGKTVSWEQAHALLEKRFTTPAPRRVTTVL 150 Query: 221 VLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFL-----SRL 275 ++DE+D L + + L V++ +AN++D+ +R L SRL Sbjct: 151 LVDELDILCNR------RQDVVYNLLDWPTKSAAKLVVVTIANTMDLPERLLMGKVTSRL 204 Query: 276 NLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLF 335 L R + FQPY+ +Q+ EIV ++ T F+ A++ A+K A +GD R+ Sbjct: 205 GLTR------LTFQPYSHKQLQEIVTARLGGSET--FKGEAVQLVARKVAAVSGDARRAL 256 Query: 336 DVLRGSIEIYELEKRFLLSPTRGSLNSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFS 395 D+ R + EI + T+ VK + + ++ + + Sbjct: 257 DICRRATEIAD------------------------TAAVK--------CVTMLHVQQALA 284 Query: 396 KFVNNNSTRTRIAKLNIQQKLILCTIIQSLKLNS--DATIDESFDHYIKAITKTD-TLAP 452 + + + + I + +++ L I + + T + T P Sbjct: 285 EMIASAKVQ-AIRNCSRMEQIFLQAIAAEVTRTGVEETTFMGVYQQVETIAAFMGVTFPP 343 Query: 453 LQRNEFLEICTILETCGLVSIKKTK 477 R L +C+ L L+ + ++ Sbjct: 344 PGRA--LRLCSKLGAERLIISEHSR 366 >2V1U-A nrPDB Length = 387 Score = 246 bits (628), Expect = 2e-65, Method: Composition-based stats. Identities = 86/433 (19%), Positives = 148/433 (34%), Gaps = 94/433 (21%) Query: 74 SDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKF--QSLPL 131 LP R AE ++ LA A+ + + + G GTGKTA +++R+ S Sbjct: 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLG 76 Query: 132 SLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAV-TSINCISLGEPSSIFQKIFDSFQ 190 L P + P + + E+V V +S+GE +++++ Sbjct: 77 VLVKPIYVNARHRETP-------YRVASAIAEAVGVRVPFTGLSVGE---VYERLVKRLS 126 Query: 191 DLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMD---------RLLHANTSETQSVRT 241 L G +++VLDE+D LL+ T Q + Sbjct: 127 RLRG----------------------IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD 164 Query: 242 ILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV- 300 V L+G+ NSL + R+ G + +VF PYTA Q+ +I+ Sbjct: 165 -----------RVWVSLVGITNSLGFVENLEPRVKSSLGEV--ELVFPPYTAPQLRDILE 211 Query: 301 IQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSL 360 + + + P + A A GD R+ D+LR + EI E + + Sbjct: 212 TRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYS 271 Query: 361 NSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCT 420 A + + + L + KL+L + Sbjct: 272 ARA---------------------------------EIERDRVSEVVRTLPLHAKLVLLS 298 Query: 421 IIQSLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCK- 479 I+ A+ E ++ Y K +T T L + I + L+ G+V + Sbjct: 299 IMMLEDGGRPASTGEIYERY-KELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGR 357 Query: 480 -GKTKRFVDKIDV 491 GKT+ D Sbjct: 358 YGKTREVSLDADR 370 >5V8F-A nrPDB Length = 913 Score = 237 bits (603), Expect = 1e-62, Method: Composition-based stats. Identities = 86/450 (19%), Positives = 171/450 (38%), Gaps = 108/450 (24%) Query: 43 SPEKLQFGSQSIFLRTKALLQKS---SELVNLNSSDGALPARTAEYEQVMNFLAKAISEH 99 + +K Q ++IF + K L S E++ + LPAR E+ + AI Sbjct: 412 TTQKHQI-VETIFSKVKKQLNSSYVKEEILKSANFQDYLPARENEFASIYLSAYSAIESD 470 Query: 100 RSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPD 159 + ++Y+ G PG GKT + ++++ S + E+PD Sbjct: 471 SATTIYVAGTPGVGKTLTVREVVKELLSS-----------------------SAQREIPD 507 Query: 160 GRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTL-QIKNMQHLQKFLE--PYHKKT 216 IN + + +P+ ++ +++ ++G L +M+ L+ + + P +KK Sbjct: 508 -----FLYVEINGLKMVKPTDCYETLWN---KVSGERLTWAASMESLEFYFKRVPKNKKK 559 Query: 217 TFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFL---- 272 T VV+LDE+D ++ T+S + F ++I +AN++D+ +R L Sbjct: 560 TIVVLLDELDAMV------TKSQDIMYNFFNWTTYENAKLIVIAVANTMDLPERQLGNKI 613 Query: 273 -SRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIF------------------- 312 SR+ R I+F YT E++ I+ ++ L F Sbjct: 614 TSRIGFTR------IMFTGYTHEELKNIIDLRLKGLNDSFFYVDTKTGNAILIDAAGNDT 667 Query: 313 -----------------QPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELE------- 348 AI+ A++K A +GD R+ V + + EI E Sbjct: 668 TVKQTLPEDVRKVRLRMSADAIEIASRKVASVSGDARRALKVCKRAAEIAEKHYMAKHGY 727 Query: 349 ----KRFLLSPTRGSLNSAQVPLTPTTSPVKKSYPEPQGKIGLN-----YIAKVFSKFVN 399 K + + + ++ K + G+ ++ K ++ +N Sbjct: 728 GYDGKTVIEDENEEQIYDDEDKDLIESNKAKDDNDDDDDNDGVQTVHITHVMKALNETLN 787 Query: 400 NNSTRTRIAKLNIQQKLILCTIIQSLKLNS 429 + T + +L+ KL + ++ +K N Sbjct: 788 -SHVITFMTRLSFTAKLFIYALLNLMKKNG 816 >2QBY-B nrPDB Length = 384 Score = 125 bits (312), Expect = 6e-29, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 136/428 (31%), Gaps = 85/428 (19%) Query: 73 SSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLS 132 S +P R + + S G GTGKT I Sbjct: 17 SVFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYI----------- 65 Query: 133 LSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLG-EPSSIFQKIFDSFQD 191 + + D + V +NC +G P ++ + Sbjct: 66 ----------------FNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTG 109 Query: 192 LNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKL 251 + P I +++ K ++ + ++ LDE+D L+ + L+ L + Sbjct: 110 FSVPKHGINLGEYIDK-IKNGTRNIRAIIYLDEVDTLVKRRGGDI-------VLYQLLR- 160 Query: 252 PTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQ-KMSSLPTI 310 + +I ++N ++++D R+ G +++F+PY AEQ+ I+ + L Sbjct: 161 SDANISVIMISNDINVRDYMEPRVLSSLG---PSVIFKPYDAEQLKFILSKYAEYGLIKG 217 Query: 311 IFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSLNSAQVPLTPT 370 + + + A A GD RK ++L + ++ Sbjct: 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA------------------------- 252 Query: 371 TSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCTIIQSLKLNSD 430 G I ++ K + + L KL L ++I+S Sbjct: 253 ---------SGGGIIRKEHVDKAIVDY-EQERLIEAVKALPFHYKLALRSLIES------ 296 Query: 431 ATIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCK--GKTKRFVDK 488 + + Y K R F +I + L+ G+V I+ G K++ Sbjct: 297 EDVMSAHKMYTDLCNKFKQKPLSYRR-FSDIISELDMFGIVKIRIINRGRAGGVKKYALV 355 Query: 489 IDVDLDMR 496 D + +R Sbjct: 356 EDKEKVLR 363 >1FNN-A nrPDB Length = 389 Score = 66.5 bits (160), Expect = 2e-11, Method: Composition-based stats. Identities = 70/420 (16%), Positives = 143/420 (34%), Gaps = 88/420 (20%) Query: 72 NSSDGALPARTAEYEQVMNFLAKAIS--EHRSDSLYITGPPGTGKTAQLDMIIRQKFQSL 129 + LP R + +Q+ L + H + G PGTGKT L +K L Sbjct: 13 SYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL-----RKLWEL 67 Query: 130 PLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSF 189 +T R IN ++I +I S Sbjct: 68 YKDKTTAR-----------------------------FVYINGFIYRNFTAIIGEIARSL 98 Query: 190 QDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLA 249 ++ P + + L +E ++ ++ ++ +D + + + + Sbjct: 99 -NIPFPRRGLSRDEFLALLVEHLRERDLYMFLV--LDDAFNLAPDILSTFIRLGQEADKL 155 Query: 250 KLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIV-FQPYTAEQMYEIV-IQKMSSL 307 ++ V++G +++ + RG++ + ++ F PYT +Q+++I+ + + L Sbjct: 156 GAFRIALVIVGHNDAV--LNNLDP---STRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL 210 Query: 308 PTIIFQPMAIKFAAKKCAGNT------GDLRKLFDVLRGSIEIYELEKRFLLSPTRGSLN 361 + ++ A T GD R D+L S + R ++P Sbjct: 211 AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED---- 266 Query: 362 SAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCTI 421 V+KS SK V + + L + +KL L I Sbjct: 267 ------------VRKS-----------------SKEVLFGISEEVLIGLPLHEKLFLLAI 297 Query: 422 IQSLKLNSDA--TIDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCK 479 ++SLK++ T ++ + Y K + + P ++ L G+V ++ K Sbjct: 298 VRSLKISHTPYITFGDAEESY-KIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRG 356 >5UJ7-C nrPDB Length = 436 Score = 54.2 bits (128), Expect = 1e-07, Method: Composition-based stats. Identities = 60/412 (14%), Positives = 142/412 (34%), Gaps = 68/412 (16%) Query: 84 EYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLR 143 +Y+ + L + S+S+ I GP G+GKT ++ +++ + +S Sbjct: 43 QYKHLSELLKRTALHGESNSVLIIGPRGSGKTMLINHALKELMEIEEVS----------- 91 Query: 144 HTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSF--QDLNGPTLQIKN 201 E+V +N + ++I +++ G + Sbjct: 92 -------------------ENVLQVHLNGLLQINDKIALKEITRQLNLENVVGDKVFGSF 132 Query: 202 MQHLQKFLE-----PYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSF 256 ++L LE + +LDE D H ++ + LF +++ Sbjct: 133 AENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHH-----KNQTLLYNLFDISQSAQTPI 187 Query: 257 VLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPMA 316 +IG+ LD+ + R+ R Q + + Q +I +++S LP + Sbjct: 188 AVIGLTCRLDILELLEKRVK-SRFSHRQIHLMNSFGFPQYVKIFKEQLS-LPAEFPDKVF 245 Query: 317 IKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSLNSAQVPLTPTTSPVKK 376 + + + D R + +VL+ I + +L S + L + V Sbjct: 246 AEKWNENVQYLSED-RSVQEVLQKHFNISK------------NLRSLHMLLMLALNRVTA 292 Query: 377 SYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCTI--IQSLKLNSDATID 434 S+P + S+ + +S + L++ + ++ + + + Sbjct: 293 SHPFMTAVDLMEA-----SQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQ 347 Query: 435 ESFDHYIKAITKTDTLAP-LQRNEFLEICTILETCGLVSIKKTKC-KGKTKR 484 ++ + K + + ++ ++ L+ L IK + G ++R Sbjct: 348 MVYNEFQKFVQRKAHSVYNFEKPVVMKAFEHLQ--QLELIKPMERTSGNSQR 397 >5V8F-D nrPDB Length = 529 Score = 49.2 bits (115), Expect = 4e-06, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 18/210 (8%) Query: 86 EQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHT 145 +++ + ++I + S S+ + GP + KT LD + QS T R + Sbjct: 80 QEIDRIIKQSIIQKESHSVILVGPRQSYKTYLLDYELSLLQQSYKEQFITIRLNGFIHSE 139 Query: 146 NPNL-----QNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIK 200 + Q + G E + TS+ IS G + +F+KI Sbjct: 140 QTAINGIATQLEQQLQKIHGSEEKIDDTSLETISSGSLTEVFEKILLLLDSTT-----KT 194 Query: 201 NMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIG 260 + + K T V + DE+D + LF + + V + G Sbjct: 195 RNEDSGEVDRESITKITVVFIFDEIDTFAGPV-----RQTLLYNLFDMVEHSRVPVCIFG 249 Query: 261 MANSLDMKDRFLSRLNLDRGLLPQTIVFQP 290 L++ + R+ Q +++ P Sbjct: 250 CTTKLNILEYLEKRVK---SRFSQRVIYMP 276 >4XGC-D nrPDB Length = 459 Score = 48.0 bits (112), Expect = 1e-05, Method: Composition-based stats. Identities = 66/413 (15%), Positives = 139/413 (33%), Gaps = 59/413 (14%) Query: 83 AEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVL 142 E V L + S+SL + GP G+GKT ++ ++ Sbjct: 31 KERSNVRLLLQRTAEMGESNSLLLLGPRGSGKTTLINSVLADLL---------------- 74 Query: 143 RHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNM 202 N + + DG L + ++ I++ Q ++ D +N+ Sbjct: 75 --PNKSFGENTLIVHLDGNLHTDDRVALKSITV-------QMQLENAADGKVFGSFAENL 125 Query: 203 QHLQKFLEPYHKKTTFVV-VLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGM 261 L + L+ K + V+ +L+E D + + LF +++ ++G+ Sbjct: 126 AFLLQCLKAGGKHSKSVIFILEEFDLFCAH-----HNQTLLYNLFDVSQSAQAPICVLGV 180 Query: 262 ANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTI---------IF 312 LD+ + R+ R Q +F + Y + + + SLPT I+ Sbjct: 181 TCRLDVIELLEKRVK-SRFSHRQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIY 239 Query: 313 QPMAIKFAAKKCAGNTGD---------LRKLFD--VLRGSIEIYELEKRFLLSPTRGSLN 361 I+ A + N D LR ++ + + + + R L Sbjct: 240 NLQNIQSGALYFSRNHFDPGEYGFSPRLRDAWNKQICKV---LATQQARSTLQALHDFDI 296 Query: 362 SAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQKLILCTI 421 S V P+ I +A V S+F + + L++ + ++ I Sbjct: 297 SEAYLKNFLFRLVAHLRPQ-SPHITAEKMAAVGSQF-EGDDKIELLCGLSVLELCLIIAI 354 Query: 422 IQSLKLNSDAT--IDESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVS 472 ++ + + + + K + T+ ++R+ L+ L L+ Sbjct: 355 KHHSQIYDRDSFNFEIIYARFSKFAKVSTTMQAVERSIVLKAFEHLRIAELIM 407 >4XGC-E nrPDB Length = 460 Score = 38.0 bits (86), Expect = 0.011, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 72 NSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQ 124 +S + P R A E + + + SE ++Y+ G GTGKTA +++ Sbjct: 6 SSLEPLFPCREAAIETLGELIGDS-SETYPSAIYLFGHSGTGKTALTRAFLKE 57 >5C18-A nrPDB Length = 785 Score = 36.5 bits (82), Expect = 0.030, Method: Composition-based stats. Identities = 56/362 (15%), Positives = 99/362 (27%), Gaps = 84/362 (23%) Query: 63 QKSSELVNLNSSDGALPARTAEYEQVMNFLA---------KAISEHRSDSLYITGPPGTG 113 + E +N D R + Q+ + KAI + + GPPGTG Sbjct: 191 EDEEESLNEVGYDDIGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTG 249 Query: 114 KTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCI 173 KT + + L IN Sbjct: 250 KTLIARAVANETGAFFFL--------------------------------------INGP 271 Query: 174 SLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANT 233 + L G + +L+K E K ++ +DE+D + Sbjct: 272 EI-------------MSKLAGESES-----NLRKAFEEAEKNAPAIIFIDELDAIAPKRE 313 Query: 234 SETQSV--RTILELFLLAK--LPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQ 289 V R + +L L +++ N + D L R R I Sbjct: 314 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG--RFDREVDIGIP 371 Query: 290 PYTAE-QMYEIVIQKMSSLPTIIFQPMAIKF---AAKKCAGNTGDL-----RKLFDVLRG 340 T ++ +I + M + + +A + A + RK D++ Sbjct: 372 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 431 Query: 341 SIEIYELEKRFLLSPTRGSLN---SAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKF 397 E + E L+ T S P + V+ + GL + + + Sbjct: 432 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQEL 491 Query: 398 VN 399 V Sbjct: 492 VQ 493 >2EWW-A nrPDB Length = 372 Score = 36.1 bits (81), Expect = 0.043, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 101/273 (36%), Gaps = 38/273 (13%) Query: 25 PR--PLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKALLQKSSELV-----NLNSSDGA 77 PR P +KL ++ V E +KL+ Q F + + V ++ ++ + Sbjct: 53 PRLTPEDTQKLAYS-VMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQRGSVAAALRS 111 Query: 78 LPARTAEYEQVMNFLAKAISE---HRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLS 134 LPA E++++ L + E + + +TGP G+GK+ + +I Q+ + Sbjct: 112 LPAEIPEFKKLG--LPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 169 Query: 135 TPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNG 194 T E P + + +N +GE + F + + Sbjct: 170 T-------------------IEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP 210 Query: 195 PTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPTV 254 + + M+ L+ T +V + + ++ I+++F L + V Sbjct: 211 DVIFVGEMRDLETVETALRAAETGHLVFGTL-----HTNTAIDTIHRIVDIFPLNQQEQV 265 Query: 255 SFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIV 287 VL + + + R L ++ R L + ++ Sbjct: 266 RIVLSFILQGI-ISQRLLPKIGGGRVLAYELLI 297 >2XSZ-D nrPDB Length = 378 Score = 35.3 bits (79), Expect = 0.066, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 97/347 (27%), Gaps = 31/347 (8%) Query: 52 QSIFLRTKALLQKSSELVNLNSSDGALPARTAE--------YEQVMNFLAKAISEHR--S 101 I T+ + + D AL R A + + + I E + Sbjct: 26 PEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAG 85 Query: 102 DSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGR 161 ++ I G PGTGKTA + + P + L + ++ R Sbjct: 86 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 145 Query: 162 LESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIK-----NMQHLQKFLEPYHKKT 216 ++ ++ +SL E I + +G T +IK + K Sbjct: 146 IKEGPPGVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAE 205 Query: 217 TF--VVVLDE---MDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRF 271 V+ +DE +D + + L + + + Sbjct: 206 IIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDL 265 Query: 272 LSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTGDL 331 L RL + PY+ + +I+ + + + A + G L Sbjct: 266 LDRLLIVST--------TPYSEKDTKQILRIRCEEEDVEMSE-DAYTVLTRI--GLETSL 314 Query: 332 RKLFDVLRGSIEIYELEKRFLLSPTRGSLNSAQVPLTPTTSPVKKSY 378 R ++ + + K + + ++ K Y Sbjct: 315 RYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEY 361 >6MCK-A nrPDB Length = 606 Score = 34.9 bits (78), Expect = 0.095, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 90/324 (27%), Gaps = 74/324 (22%) Query: 92 LAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQN 151 L KAI + + GPPGTGKT + + L Sbjct: 21 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL-------------------- 60 Query: 152 LSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEP 211 IN + L G + +L+K E Sbjct: 61 ------------------INGPEI-------------MSKLAGESES-----NLRKAFEE 84 Query: 212 YHKKTTFVVVLDEMDRLLHANTSETQSV--RTILELFLLAK--LPTVSFVLIGMANSLDM 267 K ++ +DE+D + V R + +L L +++ N + Sbjct: 85 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 144 Query: 268 KDRFLSRLNLDRGLLPQTIVFQPYTAE-QMYEIVIQKMSSLPTIIFQPMAIKF---AAKK 323 D L R R I T ++ +I + M + + +A + Sbjct: 145 IDPALRRFG--RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD 202 Query: 324 CAGNTGDL-----RKLFDVLRGSIEIYELEKRFLLSPTRGSLN---SAQVPLTPTTSPVK 375 A + RK D++ E + E L+ T S P + V+ Sbjct: 203 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 262 Query: 376 KSYPEPQGKIGLNYIAKVFSKFVN 399 + GL + + + V Sbjct: 263 VPQVTWEDIGGLEDVKRELQELVQ 286 >3PVS-A nrPDB Length = 447 Score = 34.5 bits (77), Expect = 0.097, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 21/164 (12%) Query: 186 FDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILEL 245 + + +I+ + ++T ++ +DE+ R +S + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRT--ILFVDEVHRF-------NKSQQDAF-- 126 Query: 246 FLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMS 305 L + + IG + LN + + + + E + +++ Q M Sbjct: 127 --LPHIEDGTITFIGATT-----ENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAME 179 Query: 306 SL-PTIIFQPMAIKFAAKKCAGN--TGDLRKLFDVLRGSIEIYE 346 Q + + ++ GD R+ + L ++ E Sbjct: 180 DKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAE 223 >6B4I-E nrPDB Length = 430 Score = 34.5 bits (77), Expect = 0.11, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 11/159 (6%) Query: 87 QVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTN 146 ++ + +L GTGKTA ++ Q P + + Sbjct: 68 KIQENALPLMLAEPPQNLIAQSQSGTGKTAA--FVLAMLSQVEPANKYPQCLCLSPTYEL 125 Query: 147 PNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQ 206 ++ E ++ L I ++I + G + + Sbjct: 126 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQI------VIGTPGTVLDWCSKL 179 Query: 207 KFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILEL 245 KF++P K V VLDE D ++ + QS+R L Sbjct: 180 KFIDP---KKIKVFVLDEADVMIATQGHQDQSIRIQRML 215 >5KWA-A nrPDB Length = 497 Score = 34.5 bits (77), Expect = 0.11, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 77/238 (32%), Gaps = 46/238 (19%) Query: 84 EYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLR 143 E + L + S + + GPPG GKT + + + D Sbjct: 164 ELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKM-----AEVRGDDAH 218 Query: 144 HTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQ 203 N+ EL + +GE + IF Sbjct: 219 EAKSYFLNIKGPELLNKF-------------VGETERHIRLIF----------------- 248 Query: 204 HLQKFLEPYHKKTTFVVVLDEMD-RLLHANTSETQSVRTILELFLLAKLPTV----SFVL 258 Q+ E + T +V DEMD T + V T + LL+++ V + ++ Sbjct: 249 --QRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEIDGVEGLENVIV 306 Query: 259 IGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPMA 316 IG +N DM D + R G L I + AE +I + ++ + +A Sbjct: 307 IGASNREDMIDPAILR----PGRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHADDLA 360 >3HU1-A nrPDB Length = 489 Score = 34.5 bits (77), Expect = 0.11, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 88/315 (27%), Gaps = 78/315 (24%) Query: 63 QKSSELVNLNSSDGALPARTAEYEQVMNFLA---------KAISEHRSDSLYITGPPGTG 113 + E +N D R + Q+ + KAI + + GPPGTG Sbjct: 192 EDEEESLNEVGYDDIGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTG 250 Query: 114 KTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCI 173 KT + + L IN Sbjct: 251 KTLIARAVANETGAFFFL--------------------------------------INGP 272 Query: 174 SLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANT 233 + L G + +L+K E K ++ +DE+D + Sbjct: 273 EI-------------MSKLAGESES-----NLRKAFEEAEKNAPAIIFIDELDAIAPKRE 314 Query: 234 SETQSV--RTILELFLLAK--LPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQ 289 V R + +L L +++ N + D L R R I Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG--RFDREVDIGIP 372 Query: 290 PYTAE-QMYEIVIQKMSSLPTIIFQPMAIKF---AAKKCAGNTGDLRKLFDVLRGSIEIY 345 T ++ +I + M + + +A + A + +R +++ Sbjct: 373 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA--ALQAIRKKMDLI 430 Query: 346 ELEKRFLLSPTRGSL 360 +LE + + SL Sbjct: 431 DLEDETIDAEVMNSL 445 >1SXJ-D nrPDB Length = 353 Score = 34.5 bits (77), Expect = 0.12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 10/145 (6%) Query: 57 RTKALLQKSSELVNLNSSDGALPARTAEY---EQVMNFLAKAISEHRSDSLYITGPPGTG 113 R + L L + P E + + L K + + GPPGTG Sbjct: 11 RKISKLAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTG 70 Query: 114 KTAQLDMIIRQKF-------QSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVA 166 KT+ + + ++ + + L L+ S R ++R N L+ + LE+ Sbjct: 71 KTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP 130 Query: 167 VTSINCISLGEPSSIFQKIFDSFQD 191 I L E S+ + + Sbjct: 131 CPPYKIIILDEADSMTADAQSALRR 155 >5V8F-E nrPDB Length = 479 Score = 34.2 bits (76), Expect = 0.13, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 29/220 (13%) Query: 81 RTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKD 140 R + + +++ A + +L + G GTGKT +++ F + P + Sbjct: 11 REYQTNCLASYI-SADPDITPSNLILQGYSGTGKT----YTLKKYFNANP---------N 56 Query: 141 VLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIK 200 + ++ +SW L +V + + P++ + + + P L +K Sbjct: 57 LHAVWLEPVELVSWKPLLQAIARTVQY-KLKTLYPNIPTTDYDPL-----QVEEPFLLVK 110 Query: 201 NMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIG 260 + ++ E +KT ++LD D L + + + EL + F+ Sbjct: 111 TLHNIFVQYESLQEKTCLFLILDGFDSLQDLDAALFNKYIKLNELLPKDSKINIKFIYTM 170 Query: 261 MANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIV 300 + S L T++F Y +++ I+ Sbjct: 171 LETSF---------LQRYSTHCIPTVMFPRYNVDEVSTIL 201 >4M4W-J nrPDB Length = 317 Score = 34.2 bits (76), Expect = 0.14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%) Query: 74 SDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSL 133 D + P+R A ++ V +FL + LY+ G G GKT L I + + S+ Sbjct: 134 VDISDPSRLAMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSM 193 Query: 134 STPRSKDVLRHTN 146 + V N Sbjct: 194 IVYVPEFVRELKN 206 >1SXJ-A nrPDB Length = 516 Score = 34.2 bits (76), Expect = 0.15, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 15/184 (8%) Query: 104 LYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLE 163 + GPPG GKT ++ Q L + + DV T N + + + Sbjct: 80 AMLYGPPGIGKTTAAHLV----AQELGYDILEQNASDVRSKTLLN----AGVKNALDNMS 131 Query: 164 SVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLD 223 V N + F I D ++G + L +F K +T ++++ Sbjct: 132 VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--DRGGVGQLAQFCR---KTSTPLILIC 186 Query: 224 EMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRL-NLDRGLL 282 L + + + + + I + + + RL RG + Sbjct: 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKS-RLMTIAIREKFKLDPNVIDRLIQTTRGDI 245 Query: 283 PQTI 286 Q I Sbjct: 246 RQVI 249 >5VHP-E nrPDB Length = 262 Score = 33.8 bits (75), Expect = 0.17, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 4/153 (2%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDG 160 + GPPGTGKT + Q + +S+ + + ++ + + Sbjct: 40 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQ 99 Query: 161 RLESV--AVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTF 218 + +I E +S ++I + +L + ++ + T Sbjct: 100 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLD 159 Query: 219 VVVL--DEMDRLLHANTSETQSVRTILELFLLA 249 +L +DR +H + Q+ IL++ Sbjct: 160 PALLRPGRLDRKIHIDLPNEQARLDILKIHAGP 192 >2X8A-A nrPDB Length = 274 Score = 33.8 bits (75), Expect = 0.17, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 84/264 (31%), Gaps = 27/264 (10%) Query: 144 HTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDS---------FQDLNG 194 + L+ PD + +++ + + + L P + + F + G Sbjct: 19 REELTMAILAPVRNPD-QFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKG 77 Query: 195 PTL----QIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQ--SVRTILELFLL 248 P L ++ + +++ + V+ DE+D L + SVR + +L Sbjct: 78 PELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTE 137 Query: 249 AKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLP 308 + MA + + D + L V P A+++ + + Sbjct: 138 MDGLEARQQVFIMAAT-NRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK 196 Query: 309 TIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSLNSAQVPLT 368 + + ++ A GDLR D ++ L + + R + + Sbjct: 197 PPLDADVNLEAIA-------GDLR--CD-CYTGADLSALVREASICALRQEMARQKSGNE 246 Query: 369 PTTSPVKKSYPEPQGKIGLNYIAK 392 V + E K + I+K Sbjct: 247 KGELKVSHKHFEEAFKKVRSSISK 270 >3CLM-A nrPDB Length = 352 Score = 33.8 bits (75), Expect = 0.18, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 434 DESFDHYIKAITKTDTLAPLQRNEFLEICTILETCGLVSIKKTKCKGKTKRFVDKIDVDL 493 D + + A+ + L+P QR E + + + C + + GKT ++ +L Sbjct: 55 DALYADEVAALKR-QNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPEL 113 >2XSZ-A nrPDB Length = 367 Score = 33.8 bits (75), Expect = 0.18, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 26/221 (11%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLPL-----SLSTPRSKDVLRHTNPNLQNLSWF 155 ++ + GPPGTGKTA I ++ +P S N + Sbjct: 77 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGL 136 Query: 156 ELPDGRLESVAVTSINCISLGEPS-SIFQKIFDSFQDLNGPT---LQIKNMQHLQKFLEP 211 + +G + +++ + + Q I L P + K + K + Sbjct: 137 RIKEGPPGIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNK 196 Query: 212 YHKKTTF-----VVVLDE---MDRLLHANTSETQSVRTI-LELFLLAKLPTVSFVLIGMA 262 Y + V+ +DE +D + +F + V + Sbjct: 197 YIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDIT 256 Query: 263 NSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQK 303 + + L R+ + R +L YT ++M +I+ + Sbjct: 257 SPHGIPLDLLDRVMIIRTML--------YTPQEMKQIIKIR 289 >3FMO-B nrPDB Length = 300 Score = 33.4 bits (74), Expect = 0.22, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 11/159 (6%) Query: 87 QVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTN 146 ++ + +L GTGKTA ++ Q P + + Sbjct: 117 KIQENALPLMLAEPPQNLIAQSQSGTGKTAA--FVLAMLSQVEPANKYPQCLCLSPTYEL 174 Query: 147 PNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQ 206 ++ E ++ L I ++I + G + + Sbjct: 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQI------VIGTPGTVLDWCSKL 228 Query: 207 KFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILEL 245 KF++P K V VLDE D ++ + QS+R L Sbjct: 229 KFIDP---KKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 >3FHC-B nrPDB Length = 235 Score = 33.4 bits (74), Expect = 0.23, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 11/159 (6%) Query: 87 QVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTN 146 ++ + +L GTGKTA ++ Q P + + Sbjct: 50 KIQENALPLMLAEPPQNLIAQSQSGTGKTAA--FVLAMLSQVEPANKYPQCLCLSPTYEL 107 Query: 147 PNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQ 206 ++ E ++ L I ++I + G + + Sbjct: 108 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQI------VIGTPGTVLDWCSKL 161 Query: 207 KFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILEL 245 KF++P K V VLDE D ++ + QS+R L Sbjct: 162 KFIDP---KKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 >6FWS-A nrPDB Length = 716 Score = 33.4 bits (74), Expect = 0.26, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 18/166 (10%) Query: 74 SDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM----IIRQKFQSL 129 +P Q++ +AK ++ L I P G GKT + I R++ ++L Sbjct: 22 IPDFIPRAPQ--RQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTL 79 Query: 130 PLSLSTPRSKDVLRHTNPNLQNL----SWFELPDGRLESVAVTSINCISLGEPSSIFQKI 185 +S + +D + + L F GR V ++ ++ EP+ Q + Sbjct: 80 VVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQ--QDL 137 Query: 186 FDSFQDLNGPTLQIKNMQ------HLQKFLEPYHKKTTFVVVLDEM 225 D P Q + + L + + T + + D++ Sbjct: 138 LAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDL 183 >6MSD-E nrPDB Length = 403 Score = 33.0 bits (73), Expect = 0.34, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 4/149 (2%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDG 160 + GPPGTGKT + Q + +S+ + + ++ + + Sbjct: 181 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQ 240 Query: 161 RLESV--AVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTF 218 + +I E +S ++I + +L + ++ + T Sbjct: 241 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLD 300 Query: 219 VVVL--DEMDRLLHANTSETQSVRTILEL 245 +L +DR +H + Q+ IL++ Sbjct: 301 PALLRPGRLDRKIHIDLPNEQARLDILKI 329 >2R65-A nrPDB Length = 268 Score = 33.0 bits (73), Expect = 0.35, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 15/137 (10%) Query: 202 MQHLQKFLEPYHKKTTFVVVLDEMDRL---------LHANTSETQSVRTILELFLLAKLP 252 ++ E K+ ++ +DE+D + + N Q++ +L Sbjct: 89 ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 Query: 253 TVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIF 312 +++ N + L Q +V +P ++ EI+ + + + Sbjct: 149 NAPVIVLAATNR---PEILDPALMRPGRFDRQVLVDKPDFNGRV-EILKVHIKGVK--LA 202 Query: 313 QPMAIKFAAKKCAGNTG 329 + ++ AK AG G Sbjct: 203 NDVNLQEVAKLTAGLAG 219 >4D81-A nrPDB Length = 283 Score = 32.6 bits (72), Expect = 0.38, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 76/258 (29%), Gaps = 90/258 (34%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDG 160 + + GPPG GKT + + D Sbjct: 45 PRGILLYGPPGCGKTMIAAAVANEL---------------------------------DS 71 Query: 161 RLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVV 220 V SI LGE KIF + ++L+ + ++ Sbjct: 72 EFIHVDAASIMSKWLGEAEKNVAKIFKTARELS------------------KKENKPAII 113 Query: 221 VLDEMDRLLHANTSETQSVRTILELFL-----LAKLPTVS-FVLIGMANS---------- 264 +DE+D LL + TSE + FL LA +S +IG N Sbjct: 114 FIDELDALLASYTSEVGGEARVRNQFLKEMDGLADKNEISKVYVIGATNKPWRLDEPFLR 173 Query: 265 ----------------LDMKDRFLSRLNLDRGLLPQTI--VFQPYTAEQMYEIVIQK--- 303 L++ + S++ LD + + + + YTA + +IV Sbjct: 174 RFQKRIYITLPDKAHRLELLKHYSSKVKLDPNVNLEELAELTDGYTASDIRDIVQSAHMR 233 Query: 304 --MSSLPTIIFQPMAIKF 319 + +P AI Sbjct: 234 VVKEMFEKNLQEPRAINM 251 >1Y63-A nrPDB Length = 184 Score = 32.6 bits (72), Expect = 0.44, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 94 KAISEHRSDSLYITGPPGTGKTAQLDMIIRQK 125 ++ + + ++ ITG PGTGKT+ +MI + Sbjct: 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAEL 34 >5WDH-A nrPDB Length = 376 Score = 32.2 bits (71), Expect = 0.57, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 40 PESSPEKLQFGSQSIFLRTKALLQKSSELVNLNSSDGALP---ARTAEYEQVMNFLAKAI 96 P P +L T + + + S D P + +E++ + A+ Sbjct: 54 PSDPPTRLSLSRSDERRGTLSG-APAPPPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSAL 112 Query: 97 SEHRSDSLYITGPPGTGKTAQLDM 120 + ++ G G+GKT ++ Sbjct: 113 DGY-PVCIFAYGQTGSGKTFTMEG 135 >4LJ8-A nrPDB Length = 339 Score = 32.2 bits (71), Expect = 0.58, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 35/219 (15%) Query: 102 DSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGR 161 S GP G GKT + ++L +L + ++ + L Sbjct: 74 GSFLFLGPTGVGKT--------ELAKTLAATLFDTEEAMIQIDMTEYMEKHAVSRLIGAP 125 Query: 162 LESVAVTSINCISLGE-----PSSI--FQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHK 214 V L E P S+ F +I + D+ LQI + L Sbjct: 126 PGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVD 183 Query: 215 KTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFLSR 274 V++L TS S + L + + + + FL+R Sbjct: 184 FRNTVIIL----------TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE-FLNR 232 Query: 275 LNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQ 313 L + +VF+P T EQ+ +IV ++S L + + Sbjct: 233 L-------DEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 264 >4LGM-A nrPDB Length = 295 Score = 31.8 bits (70), Expect = 0.70, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 21/205 (10%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDG 160 + + GPPG GKT + + + L N+ N+ + Sbjct: 57 PRGILLYGPPGCGKTMIAAAVANEIDSIFMQLDAASVMSKWLGEAEKNVANVFKMAREES 116 Query: 161 RLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVV 220 + +P+ IF D+ + + + Q E Sbjct: 117 K------------KQNKPAIIFIDQLDALLGVYSTEVGGEARVRNQFLKEMDG------- 157 Query: 221 VLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRG 280 +LD+ + T + E FL + L L + + S++ LD Sbjct: 158 LLDKSENYKVYVIGATNKPWRLDEAFLRRFQKRIYVPLPDYEQRLSLFKYYTSKIKLDTE 217 Query: 281 LLPQTI--VFQPYTAEQMYEIVIQK 303 + + + + + YTA + +IV Sbjct: 218 VSLEELAKLTEGYTASDIRDIVQAA 242 >1YE8-A nrPDB Length = 178 Score = 31.8 bits (70), Expect = 0.74, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 19/152 (12%) Query: 104 LYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLE 163 + ITG PG GKT + I+ + + + T +D + ++ +G+ + Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRTGFRIITT----EGKKK 57 Query: 164 SVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLD 223 + L + + F+ + L++ K V+++D Sbjct: 58 IFSSKFFTSKKLVGSYGVNVQYFEELA-----------IPILERAYREAKKDRRKVIIID 106 Query: 224 E---MDRLLHANTSETQSVRTILELFLLAKLP 252 E M+ + + + ++A +P Sbjct: 107 EIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 >1IN6-A nrPDB Length = 334 Score = 31.8 bits (70), Expect = 0.78, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 13/91 (14%) Query: 43 SPEKLQFGSQSIFLRTKALLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISEHRSD 102 +PE+ + S FLR K+L E + + L + A + D Sbjct: 6 TPERTVYDSGVQFLRPKSL----DEFIGQENVKKKLS---------LALEAAKMRGEVLD 52 Query: 103 SLYITGPPGTGKTAQLDMIIRQKFQSLPLSL 133 + + GPPG G+T +I + ++ ++ Sbjct: 53 HVLLAGPPGLGRTTLAHIIASELQTNIHVTS 83 >2CHG-A nrPDB Length = 226 Score = 31.8 bits (70), Expect = 0.80, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 104 LYITGPPGTGKTAQLDMIIRQKFQS------LPLSLSTPRSKDVLRHTNPNLQNLS 153 L +GPPGTGKTA + R F + ++ S R DV+RH + Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 >6AZ0-A nrPDB Length = 439 Score = 31.5 bits (69), Expect = 0.86, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 74 SDGALPARTA--EYEQVMNFL-----AKAISEHRSDSLYITGPPGTGKTAQLDMI 121 D A E E++++FL +++ + +TGPPGTGKT Sbjct: 2 FDDVCGCDEARAELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARAT 56 >1QVR-A nrPDB Length = 854 Score = 31.5 bits (69), Expect = 0.95, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 35/219 (15%) Query: 102 DSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGR 161 S GP G GKT + ++L +L + ++ + L Sbjct: 589 GSFLFLGPTGVGKT--------ELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAP 640 Query: 162 LESVAVTSINCISLGE-----PSSI--FQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHK 214 V L E P S+ F +I + D+ LQI + L Sbjct: 641 PGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVD 698 Query: 215 KTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFLSR 274 V++L TS S + L + + + + FL+R Sbjct: 699 FRNTVIIL----------TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE-FLNR 747 Query: 275 LNLDRGLLPQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQ 313 L + +VF+P T EQ+ +IV ++S L + + Sbjct: 748 L-------DEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 Score = 29.5 bits (64), Expect = 3.3, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Query: 81 RTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQ 127 R E +V+ L ++ + G PG GKTA ++ + ++ + Sbjct: 175 RDEEIRRVIQIL----LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 >4ON9-A nrPDB Length = 580 Score = 31.5 bits (69), Expect = 0.98, Method: Composition-based stats. Identities = 60/463 (12%), Positives = 142/463 (30%), Gaps = 59/463 (12%) Query: 71 LNSSDGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLP 130 ++ ++ P + Y+ L A+ + + I P G GKT +I + P Sbjct: 19 VSDTNLYSPFKPRNYQ-----LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP 73 Query: 131 LSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQ 190 + V+ N + E + IS ++ + Sbjct: 74 ----QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGY-RVTGISGATAENVPVEQIVENN 128 Query: 191 DLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAK 250 D+ T QI + +L+K P T ++ + H + + + Sbjct: 129 DIIILTPQIL-VNNLKKGTIPSLSIFTLMIFDE-----CHNTSKQHPYNMIMFNYLDQKL 182 Query: 251 LPTVSFV--LIGMANSLDM------KDRFLSRLNLDRGLLPQTIVFQPYTAEQMYEIVIQ 302 + + +IG+ S+ + + L L I + E++ ++V + Sbjct: 183 GGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYK 242 Query: 303 KMSSLPTIIFQ-PMAIKFAAKKCAGNTGD-LRKLFDVLRGSIEIYELE-----KRFLLSP 355 + + K+ + +T +++ L +I E + Sbjct: 243 PQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVT 302 Query: 356 TRGSLNSAQVPLTPTTSPVKKSYPEPQGKIGLNYIAKVFSKFVNNNSTRTRIAKLNIQQK 415 + + Q+P S + K+ + A + S+ + Sbjct: 303 VQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD------ 356 Query: 416 LILCTIIQSLKLNSDATIDESFDHYIKAITKTDTLAPLQRNEFLEICTIL--------ET 467 + + + + + F+ ++ + + + ++C IL ET Sbjct: 357 -FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 415 Query: 468 CGLVSIKKTKCKGKTKRFVDKIDVDLDMREFYDEMTKISILKP 510 ++ + KT+ VD ++ + + K+S LKP Sbjct: 416 ITILFV-------KTRALVDA------LKNWIEGNPKLSFLKP 445 >1JNY-A nrPDB Length = 435 Score = 31.5 bits (69), Expect = 0.98, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 14/202 (6%) Query: 174 SLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANT 233 LG+ S F + D ++ + I N+ ++ + Y T + D + + T Sbjct: 47 KLGKESEKFAFLLDRLKEERERGVTI-NLTFMRFETKKYF--FTIIDAPGHRDFVKNMIT 103 Query: 234 SETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYTA 293 +Q+ IL + + G + + + L + + PY Sbjct: 104 GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 Query: 294 EQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLL 353 ++ EIV Q + + F ++F +GD E K + Sbjct: 164 KRYKEIVDQVSKFMRSYGFNTNKVRFVP--VVAPSGD---------NITHKSENMKWYNG 212 Query: 354 SPTRGSLNSAQVPLTPTTSPVK 375 L+ ++P P P++ Sbjct: 213 PTLEEYLDQLELPPKPVDKPLR 234 >5V7X-A nrPDB Length = 752 Score = 31.1 bits (68), Expect = 1.1, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 13/91 (14%) Query: 73 SSDGALPARTAEYEQ---------VMNFLAKAISE----HRSDSLYITGPPGTGKTAQLD 119 S P + +Y + +A + + ITG G GKT Sbjct: 60 SLPIYSPEKVEDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASK 119 Query: 120 MIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQ 150 +++ + K+ L + P L+ Sbjct: 120 LVMSYVAAVCGKGAEVNQVKEQLLQSTPVLE 150 >2CHV-A nrPDB Length = 319 Score = 31.1 bits (68), Expect = 1.1, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 104 LYITGPPGTGKTAQLDMIIRQKFQS------LPLSLSTPRSKDVLRHTNPNLQNLS 153 L +GPPGTGKTA + R F + ++ S R DV+RH + Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 >2EYU-A nrPDB Length = 261 Score = 31.1 bits (68), Expect = 1.1, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 76/213 (35%), Gaps = 30/213 (14%) Query: 78 LPARTAEYEQVMNFLAKAISE---HRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLS 134 +PA E++++ L + E + + +TGP G+GK+ + +I Q+ + Sbjct: 1 MPAEIPEFKKLG--LPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 Query: 135 TPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNG 194 T E P + + +N +GE + F + + Sbjct: 59 T-------------------IEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP 99 Query: 195 PTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVRTILELFLLAKLPTV 254 + + M+ L+ T +V + + ++ I+++F L + V Sbjct: 100 DVIFVGEMRDLETVETALRAAETGHLVFGTL-----HTNTAIDTIHRIVDIFPLNQQEQV 154 Query: 255 SFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIV 287 VL + + + R L ++ R L ++ Sbjct: 155 RIVLSFILQGI-ISQRLLPKIGGGRVLAYGLLI 186 >4XGU-A nrPDB Length = 424 Score = 31.1 bits (68), Expect = 1.3, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 104 LYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLE 163 + +TGPPGTGKT+ Q L + ++ SK V+ N + WF G+L Sbjct: 175 ILLTGPPGTGKTSLCKG----LAQHLSIRMNDKYSKSVMLEINSHSLFSKWFS-ESGKLV 229 Query: 164 SVAVTSINCISLGEPSSIFQKI 185 I+ ++ E +F I Sbjct: 230 QKMFDQIDELAEDEKCMVFVLI 251 >4B3F-X nrPDB Length = 646 Score = 31.1 bits (68), Expect = 1.3, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%) Query: 104 LYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSK----DVLRHTNPNLQNLSWFELPD 159 I GPPGTGKT + II Q + L S +++ Q + P Sbjct: 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPA 267 Query: 160 GRLESVAVTSINC-ISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKF 208 LES+ S++ ++ + + I I + + ++ + F Sbjct: 268 RLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNF 317 >6EF1-K nrPDB Length = 276 Score = 30.7 bits (67), Expect = 1.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 81 RTA-EYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSL 129 R A E V L + I + + GPPGTGKT + + + Sbjct: 33 REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 82 >6EF0-L nrPDB Length = 273 Score = 30.7 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWF--ELP 158 + + GPPGTGKT + + S ++ + + ++ + + E Sbjct: 52 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHE 111 Query: 159 DGRLESVAVTSINCISLGEPSSIFQKIFDSFQDL 192 + V +I E +S ++I + +L Sbjct: 112 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 145 >3M6A-A nrPDB Length = 543 Score = 30.7 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 10/131 (7%) Query: 89 MNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLP-LSLSTPRSKDVLRHTNP 147 + K + L + GPPG GKT+ I + + +SL R + +R Sbjct: 96 YLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRR 155 Query: 148 NLQNLSWFELPDGRLES------VAVTSINCISL---GEPSSIFQKIFDSFQDLNGPTLQ 198 + G ++ + I+ +S G+PSS ++ D Q+ + Sbjct: 156 TYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHY 215 Query: 199 IKNMQHLQKFL 209 I+ L K L Sbjct: 216 IEETFDLSKVL 226 >5W3D-A nrPDB Length = 412 Score = 30.7 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 20/134 (14%) Query: 24 PPRPLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKALLQKSSELVNLNSSDGALPARTA 83 PP + ++ T + S +LQ + + ++ + SS Sbjct: 69 PPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ-------- 120 Query: 84 EYEQVMNFLAKAISEHRSD---SLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKD 140 + ++ I ++ G G+GKT +D + PR+ D Sbjct: 121 --SDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV-------GVIPRTVD 171 Query: 141 VLRHTNPNLQNLSW 154 +L + +NL W Sbjct: 172 LLFDSIRGYRNLGW 185 >1SXJ-C nrPDB Length = 340 Score = 30.7 bits (67), Expect = 1.6, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 9/100 (9%) Query: 64 KSSELVNLNSSDGALPARTAEY---EQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM 120 + NL + P E +V+ + K + E + L GPPGTGKT+ + Sbjct: 6 EKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 Query: 121 IIRQKFQS------LPLSLSTPRSKDVLRHTNPNLQNLSW 154 + R+ + L L+ S R DV+R+ + + Sbjct: 66 LAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQ 105 >6EF0-H nrPDB Length = 257 Score = 30.3 bits (66), Expect = 1.8, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 9/57 (15%) Query: 82 TAEYEQVMNFLA-KAISEHR--------SDSLYITGPPGTGKTAQLDMIIRQKFQSL 129 + E++ + +S R + + GPPGTGKT + + + Sbjct: 15 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 71 >5WVI-K nrPDB Length = 428 Score = 30.3 bits (66), Expect = 1.9, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 81 RTA-EYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSL 129 R A E V L + I + + GPPGTGKT + + + Sbjct: 185 REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 >1SXJ-B nrPDB Length = 323 Score = 30.3 bits (66), Expect = 2.0, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 10/146 (6%) Query: 104 LYITGPPGTGKTAQLDMIIRQKFQS------LPLSLSTPRSKDVLRHTNPNLQNLSWFEL 157 + I+G PG GKT + + + L L+ S R DV+R+ + L Sbjct: 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQ-KKLHL 103 Query: 158 PDGRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTT 217 P G+ + V + + ++ G ++ + + + + + L+ Sbjct: 104 PPGKHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 Query: 218 FVVVLDEMDRLLHANTSETQSVRTIL 243 + + DE +L + Sbjct: 163 YSKLSDE--DVLKRLLQIIKLEDVKY 186 >3H4M-A nrPDB Length = 285 Score = 30.3 bits (66), Expect = 2.1, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 6/60 (10%) Query: 76 GALPARTAEYEQVMNF------LAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSL 129 G L + E +V+ L + + + + GPPGTGKT + + + Sbjct: 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF 79 >4OZQ-A nrPDB Length = 720 Score = 30.3 bits (66), Expect = 2.1, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 104/312 (33%), Gaps = 51/312 (16%) Query: 38 VTPESSPEKLQFGSQSIFLRTKALL-------QKSSELVNLN--SSDGALPARTAEYEQV 88 V P S EK + SQ +F + + Q S + +++ S D P ++ V Sbjct: 382 VRPFSKREKTEKASQVVFTNGEEITVEHPDMKQVYSFIYDVSFWSFDECHPGYASQ-TTV 440 Query: 89 MNFLAKAISEHR----SDSLYITGPPGTGKTAQL------DMIIRQKFQSLPLSLSTPRS 138 LA + + + L+ G G+GK+ + II + + L ++ ++ Sbjct: 441 YETLAAPLLDRAFEGYNTCLFAYGQTGSGKSYTMMGLNEEPGIIPRFCEDLFAQIAKKQT 500 Query: 139 KDVLRHTNPNLQNLSWFELPD----------------GRLESVAVTSINCISLGEPS--- 179 +V H + + ++ D R V+ + +S+ S Sbjct: 501 SEVSYHLEMSFFEVYNEKIHDLLVCKGENGQRKQPLRAREHPVSGPYVEGLSMNVVSSYS 560 Query: 180 --SIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQ 237 + ++ + + + K+ + F + T VV +E D H TS Sbjct: 561 DIQSWLELGNKQRATAATGMNDKSSRSHSVFTLVMTQTKTEVVEGEEHD---HRITSRIN 617 Query: 238 SVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQ---TIVFQPYTAE 294 V + + G++ + L+ + L Q VF PY Sbjct: 618 LVDLAGSERCSTAHSSGQRLKEGVS----INKSLLTLGKVISALSEQANGKRVFIPYRES 673 Query: 295 QMYEIVIQKMSS 306 + ++ + + Sbjct: 674 TLTWLLKESLGG 685 >2OWM-A nrPDB Length = 443 Score = 30.3 bits (66), Expect = 2.1, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 10/107 (9%) Query: 25 PRPLKRKKLQFTDVTPESSPEKLQFGSQSIFLRTKALLQKSSELVNLNSSDGALPARTAE 84 PR L+R ++ P + L ++ F + + + D + + E Sbjct: 51 PRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTE 110 Query: 85 ------YEQVMNFLAKAISEHR----SDSLYITGPPGTGKTAQLDMI 121 E V + L + +H ++ G G+GK+ + Sbjct: 111 DEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT 157 >5G4G-A nrPDB Length = 721 Score = 30.3 bits (66), Expect = 2.2, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 47/287 (16%) Query: 83 AEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSL--------- 133 EY Q + + ++ + G G+T L +++ +P+ + Sbjct: 112 EEYVQRALIRRPMLEQD---NISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIR 168 Query: 134 -----------STPRSKDVLRHTNPNLQNLSWFELP---DGRLESVAVTSINCISLGEPS 179 S +D+ + + ELP E + +T + L P Sbjct: 169 EEPASEVLEEVSRISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPP 228 Query: 180 SIFQKIFDS---------FQDLNGPTLQIK----NMQHLQKFLEPYHKKTTFVVVLDEMD 226 + + F +NGP + K + Q L++ + ++ +DE+D Sbjct: 229 GTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEID 288 Query: 227 RLLHANTSETQSV--RTILELFLLAK--LPTVSFVLIGMANSLDMKDRFLSRLNLDRGLL 282 + V R + +L L ++IG N +D D L R R Sbjct: 289 SIAPKREEVQGEVERRVVAQLLTLMDGMKERGHVIVIGATNRIDAIDPALRRPG--RFDR 346 Query: 283 PQTIVFQPYTAEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKCAGNTG 329 I EI++ ++P + + KF + G Sbjct: 347 EIEIGVPDRNGR--KEILMIHTRNMPLGMSEEEKNKFLEEMADYTYG 391 >6FVU-L nrPDB Length = 388 Score = 30.3 bits (66), Expect = 2.3, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWF--ELP 158 + + GPPGTGKT + + S ++ + + ++ + + E Sbjct: 167 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHE 226 Query: 159 DGRLESVAVTSINCISLGEPSSIFQKIFDSFQDL 192 + V +I E +S ++I + +L Sbjct: 227 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 260 >5Z3Q-B nrPDB Length = 214 Score = 30.3 bits (66), Expect = 2.3, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQS 128 L + G PGTGK+ ++I R ++ Sbjct: 7 PVCLLVHGSPGTGKSVATNLIARAIAEA 34 >6EPG-B nrPDB Length = 401 Score = 30.3 bits (66), Expect = 2.4, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 99 HRSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQN 151 + + +++TG PG+G T+ + ++ Q L R + R L+ Sbjct: 100 QKKEVIFVTGIPGSGATSTVKNMMMQDTTKLLFEGQLARPQSAFRKIEQCLER 152 >6ED3-A nrPDB Length = 848 Score = 29.9 bits (65), Expect = 2.6, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Query: 81 RTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKF 126 R E +V+ L++ ++ + G PG GKTA ++ + ++ Sbjct: 183 RDNEIRRVVQVLSRR----TKNNPVLIGEPGVGKTAIVEGLAQRIV 224 >6EF3-H nrPDB Length = 467 Score = 29.9 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 9/57 (15%) Query: 82 TAEYEQVMNFLA-KAISEHR--------SDSLYITGPPGTGKTAQLDMIIRQKFQSL 129 + E++ + +S R + + GPPGTGKT + + + Sbjct: 215 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271 >5WVI-L nrPDB Length = 437 Score = 29.9 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWF--ELP 158 + + GPPGTGKT + + S ++ + + ++ + + E Sbjct: 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHE 274 Query: 159 DGRLESVAVTSINCISLGEPSSIFQKIFDSFQDL 192 + V +I E +S ++I + +L Sbjct: 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 308 >6E11-1 nrPDB Length = 906 Score = 29.9 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 86/272 (31%), Gaps = 25/272 (9%) Query: 63 QKSSELVNL-NSSDGALPARTAEYEQVMNFLAKAISE----HRS-DSLYITGPPGTGKTA 116 + S + L NS ++ + + + + KA + + + GP G GKT Sbjct: 587 ESSKGALKLYNSLSKSIIGNEDIIKSLSDAVVKAATGMKDPEKPIGTFLFLGPTGVGKTE 646 Query: 117 QLDMIIRQKFQS----LPLSLSTPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINC 172 + + F S + +++S + + F E+V + Sbjct: 647 LAKTLAIELFNSKDNLIRVNMSEFTEAHSVSKITGSPPGYVGFSDSGQLTEAVREKPHSV 706 Query: 173 ISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFVVVLDEMDRLLHAN 232 + E +F + G N + F T +++ + L Sbjct: 707 VLFDELEKAHADVFKVLLQILGDGYINDNHRRNIDF------SNTIIIMTSNLGAELFKK 760 Query: 233 TSETQSVRTILELFLLAKLPTVSFVLIGMANSLDMKDRFLSRLNLDRGLLPQTIVFQPYT 292 + + + + V LI + + F++R+ + VF+P Sbjct: 761 KLFFDADNSGTPEYK-RVMEDVRLSLIKKCKKVFKPE-FVNRI-------DKIGVFEPLN 811 Query: 293 AEQMYEIVIQKMSSLPTIIFQPMAIKFAAKKC 324 + +++IV + L + + ++K Sbjct: 812 KKNLHKIVALRFKKLEKRLEEKNIQVSVSEKA 843 Score = 29.9 bits (65), Expect = 3.0, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 86 EQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQ 127 E++ + + +++ + + G PGTGKT ++ ++ + + Sbjct: 214 EEIRAIIESLLRYNKNSPVLV-GNPGTGKTTIVEGLVYRIEK 254 >6QI8-A nrPDB Length = 456 Score = 29.9 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLP 130 ++ + GPPGTGKTA I ++ +P Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSKVP 92 >5VY8-A nrPDB Length = 908 Score = 29.9 bits (65), Expect = 2.8, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 81 RTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQK 125 R E + LA+ I + + G PG GKTA ++ + ++ Sbjct: 189 REEEIRSTIRVLARRIK----SNPCLIGEPGIGKTAIIEGVAQRI 229 >5UBV-A nrPDB Length = 246 Score = 29.9 bits (65), Expect = 3.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%) Query: 82 TAEYEQVMNFL-----AKAISEHRSDSLYITGPPGTGKTAQLDMI 121 E ++++ FL + + + GPPGTGKT + Sbjct: 15 KEELQELVEFLRNPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAV 59 >6AMN-A nrPDB Length = 349 Score = 29.5 bits (64), Expect = 3.1, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 81 RTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQK 125 R E + LA+ I + + G PG GKTA ++ + ++ Sbjct: 186 REEEIRSTIRVLARRIK----SNPCLIGEPGIGKTAIIEGVAQRI 226 >6EM8-A nrPDB Length = 818 Score = 29.5 bits (64), Expect = 3.6, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 12/185 (6%) Query: 43 SPEKLQFGSQSIFLRTKALLQKSSELVNLNSSDGALP---ARTAEYEQVMNFLAKAISEH 99 +PE +Q+ L + + + + DG L R E +V+ L++ Sbjct: 144 NPEMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRR---- 199 Query: 100 RSDSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRHTNPNLQNLSWFELPD 159 ++ + G PG GKTA + + + + + L E + Sbjct: 200 TKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEE 259 Query: 160 GRLESVAVTSINCISLGEPSSIFQKIFDSFQDLNGPTLQIKNMQHLQKFLEPYHKKTTFV 219 + + + +F + G I L+ L + Sbjct: 260 RLKKVMEEIQQAGNVI-----LFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGA 314 Query: 220 VVLDE 224 LDE Sbjct: 315 TTLDE 319 >5EUL-A nrPDB Length = 836 Score = 29.5 bits (64), Expect = 3.8, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 7/70 (10%) Query: 43 SPEKLQFGSQSIFLRTKALLQKSSELVNLNSSDGALPARTAEYEQVMNFLA-------KA 95 + E L+ ++S+ L T L G E+ + N Sbjct: 339 AKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPV 398 Query: 96 ISEHRSDSLY 105 + + R D +Y Sbjct: 399 VRDDRPDLIY 408 >1TF2-A nrPDB Length = 844 Score = 29.5 bits (64), Expect = 3.9, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 7/70 (10%) Query: 43 SPEKLQFGSQSIFLRTKALLQKSSELVNLNSSDGALPARTAEYEQVMNFLA-------KA 95 + E L+ ++S+ L T L G E+ + N Sbjct: 342 AKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPV 401 Query: 96 ISEHRSDSLY 105 + + R D +Y Sbjct: 402 VRDDRPDLIY 411 >5D4W-A nrPDB Length = 926 Score = 29.2 bits (63), Expect = 4.5, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Query: 81 RTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQS 128 R E +V+ L++ ++ + G PG GKT ++ + ++ + Sbjct: 200 REEEIRRVIRILSRR----TKNNPVLIGEPGVGKTTIVEGLAQRIVNA 243 >4HSE-A nrPDB Length = 397 Score = 29.2 bits (63), Expect = 4.5, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Query: 81 RTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDMIIRQKFQ 127 R E +V+ L ++ + G PG GKTA ++ + ++ + Sbjct: 38 RDEEIRRVIQIL----LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 80 >2GA8-A nrPDB Length = 359 Score = 29.2 bits (63), Expect = 5.0, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 3/83 (3%) Query: 87 QVMNFLAKAISEHRSDSLYITGPPGTGKTAQLDM---IIRQKFQSLPLSLSTPRSKDVLR 143 V+ L I ++ + + G PG+GK+ + II +K+ + + Sbjct: 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRL 69 Query: 144 HTNPNLQNLSWFELPDGRLESVA 166 NL + P+ E + Sbjct: 70 KPMVNLVDSLKTLQPNKVAEMIE 92 >6HE4-H nrPDB Length = 267 Score = 28.8 bits (62), Expect = 5.5, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 13/31 (41%) Query: 99 HRSDSLYITGPPGTGKTAQLDMIIRQKFQSL 129 + + GPPGTGKT + Q + Sbjct: 51 EPPKGVLLYGPPGTGKTLLAKAVANQTRATF 81 >6HE9-H nrPDB Length = 390 Score = 28.8 bits (62), Expect = 6.7, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 13/31 (41%) Query: 99 HRSDSLYITGPPGTGKTAQLDMIIRQKFQSL 129 + + GPPGTGKT + Q + Sbjct: 165 EPPKGVLLYGPPGTGKTLLAKAVANQTRATF 195 >3BIC-A nrPDB Length = 762 Score = 28.8 bits (62), Expect = 6.7, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 15/33 (45%) Query: 263 NSLDMKDRFLSRLNLDRGLLPQTIVFQPYTAEQ 295 +++D+ + RG P F+P+T Q Sbjct: 67 DTMDLPEELPGVKPFTRGPYPTMYTFRPWTIRQ 99 >6MAT-A nrPDB Length = 813 Score = 28.4 bits (61), Expect = 8.4, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 13/88 (14%) Query: 55 FLRTKALLQKSSELVNLNSSDGALPARTAEYEQVMNFLAKAISE-------------HRS 101 F + +L+Q +S+ ++ + E V L +I + Sbjct: 476 FRKAVSLVQPASKREGFSTIPDTTWSHVGALEDVRKKLEMSIIGPIKNPELFTRVGIKPA 535 Query: 102 DSLYITGPPGTGKTAQLDMIIRQKFQSL 129 + + GPPG GKT + + + Sbjct: 536 AGILLWGPPGCGKTLVAKAVANESKANF 563 >5VHF-B nrPDB Length = 340 Score = 28.4 bits (61), Expect = 8.8, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 101 SDSLYITGPPGTGKTAQLDMIIRQKFQSLP 130 + + GPPGTGKT + Q + Sbjct: 127 PKGVILYGPPGTGKTLLAKAVANQTSATFL 156 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.308 0.111 0.259 Lambda K H 0.267 0.0344 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,456,467 Number of Sequences: 36641 Number of extensions: 496396 Number of successful extensions: 2105 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 68 Number of HSP's that attempted gapping in prelim test: 1963 Number of HSP's gapped (non-prelim): 161 length of query: 513 length of database: 10,336,785 effective HSP length: 101 effective length of query: 412 effective length of database: 6,636,044 effective search space: 2734050128 effective search space used: 2734050128 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 61 (28.4 bits)