BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P08397
         (361 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3EQ1-A nrPDB                                                          739   0.0  
1YPN-A nrPDB                                                          243   1e-64
5H6O-A nrPDB                                                          231   3e-61
4MLQ-A nrPDB                                                          231   4e-61
4HTG-A nrPDB                                                          176   2e-44
3GPC-A nrPDB                                                           30   1.6  
1EZW-A nrPDB                                                           29   3.3  
4CBV-A nrPDB                                                           29   3.6  
6JEB-A nrPDB                                                           28   4.8  
5N9Y-A nrPDB                                                           28   6.5  

>3EQ1-A nrPDB
          Length = 361

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/361 (99%), Positives = 361/361 (100%)

Query: 1   MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG 60
           MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
Sbjct: 1   MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG 60

Query: 61  DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH 120
           DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
Sbjct: 61  DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH 120

Query: 121 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ 180
           DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSI+GNLNTRLRKLDEQ
Sbjct: 121 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIQGNLNTRLRKLDEQ 180

Query: 181 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD 240
           QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
Sbjct: 181 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD 240

Query: 241 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH 300
           PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
Sbjct: 241 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH 300

Query: 301 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA 360
           VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
Sbjct: 301 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA 360

Query: 361 H 361
           H
Sbjct: 361 H 361


>1YPN-A nrPDB
          Length = 313

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/332 (43%), Positives = 192/332 (57%), Gaps = 33/332 (9%)

Query: 20  VIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTK 79
           V+R+ TR+S LA  Q   V   L AS+PGL  E++ M T GD ILDT L+K+G + LF K
Sbjct: 5   VLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGQGLFVK 64

Query: 80  ELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPE 139
           ELE AL +N  D+ VHS+KD+P   P G  +  IC+RE+P DA V +      +L+ LP 
Sbjct: 65  ELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNY---DSLDALPA 121

Query: 140 KSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWH 199
            S+VGTSSLRR  QL  + P L  RS+RGN+ TRL KLD   E+ AIILA AGL+R+G  
Sbjct: 122 GSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD-NGEYDAIILAVAGLKRLGLE 180

Query: 200 NRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEG 259
           +R+   L PE  + AVGQGA+G+E R  D    +L+  L+  ET LR  AERA    LEG
Sbjct: 181 SRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEG 240

Query: 260 GCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGIT 319
           GC VP+  +  + DG+++L   V + DGS  I+           +    P+D        
Sbjct: 241 GCQVPIGSYAELIDGEIWLRALVGAPDGSQIIR----------GERRGAPQD-------- 282

Query: 320 ARNIPRGPQLAAQNLGISLANLLLSKGAKNIL 351
                      A+ +GISLA  LL+ GA+ IL
Sbjct: 283 -----------AEQMGISLAEELLNNGAREIL 303


>5H6O-A nrPDB
          Length = 317

 Score =  231 bits (589), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/332 (41%), Positives = 189/332 (56%), Gaps = 33/332 (9%)

Query: 21  IRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKE 80
           IR+ TR+S LA  Q + V   L A++PGLQ E++ M T GD ILDT L+K+G K LF KE
Sbjct: 12  IRIATRQSPLALWQANYVKDALMAAHPGLQVELVTMVTRGDVILDTPLAKVGGKGLFVKE 71

Query: 81  LEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEK 140
           LE A+ +   DL VHS+KD+P   P G  +  IC+RE+P DA V +       +E LP  
Sbjct: 72  LEIAMLEGRADLAVHSMKDVPVDFPDGLGLVTICEREDPRDAFVSNTY---AKIEDLPSG 128

Query: 141 SVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHN 200
           ++VGT SLRR  QL+   P L  + +RGN+ TRL KLD   E+ AIILA AGL+R+   +
Sbjct: 129 AIVGTCSLRRQCQLKAARPDLVIKELRGNVGTRLSKLD-AGEYDAIILAAAGLKRLELES 187

Query: 201 RVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGG 260
           R+   + PE+ + AVGQGA+G+E R  DQ +  L+  L+  +T  R   ERA    L+GG
Sbjct: 188 RIRSFIEPEQSLPAVGQGAVGIECRVNDQRVRALLAPLNHADTADRVRCERAMNLTLQGG 247

Query: 261 CSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITA 320
           C VP+  +  ++   ++L   V   DGS                         Q+V    
Sbjct: 248 CQVPIGSYALLEGDTIWLRALVGEPDGS-------------------------QIV---- 278

Query: 321 RNIPRGPQLAAQNLGISLANLLLSKGAKNILD 352
           R   RGP+  A+ LGI+LA  LLS+GAK IL+
Sbjct: 279 RGEIRGPRTQAEQLGITLAEQLLSQGAKEILE 310


>4MLQ-A nrPDB
          Length = 312

 Score =  231 bits (589), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 132/278 (47%), Positives = 174/278 (62%), Gaps = 6/278 (2%)

Query: 18  MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLF 77
           MR I VG+R+S+LA  QT  V+  LK      +FEI  M T GD+IL+  LSK+G K LF
Sbjct: 3   MRKIIVGSRRSKLALTQTKWVIEQLKKQGLPFEFEIKEMVTKGDQILNVTLSKVGGKGLF 62

Query: 78  TKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETL 137
            KE+E A+   E+D+ VHS+KD+P VLP G TIG I  RE+  DA++      G+  E L
Sbjct: 63  VKEIEQAMLDKEIDMAVHSMKDMPAVLPEGLTIGCIPLREDHRDALISKN---GERFEEL 119

Query: 138 PEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMG 197
           P  +V+GTSSLRR AQL      +E + IRGN++TRL KL + +++ AIILA AGL RMG
Sbjct: 120 PSGAVIGTSSLRRGAQLLSMRSDIEIKWIRGNIDTRLEKL-KNEDYDAIILAAAGLSRMG 178

Query: 198 W-HNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRH 256
           W  + V Q L PE  + AVGQGAL +E R  D ++L L+  L+  ET     AER FL+ 
Sbjct: 179 WSKDTVTQYLEPEISVPAVGQGALAIECRENDHELLSLLQALNHDETARAVRAERVFLKE 238

Query: 257 LEGGCSVPVAVHTAMKD-GQLYLTGGVWSLDGSDSIQE 293
           +EGGC VP+A +  + D G + LT  V S DG    +E
Sbjct: 239 MEGGCQVPIAGYGRILDGGNIELTSLVASPDGKTIYKE 276


>4HTG-A nrPDB
          Length = 320

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 161/307 (52%), Gaps = 18/307 (5%)

Query: 9   ATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYP------GLQFEIIAMSTTGDK 62
             A E   +  +IR+GTR S LA  Q       LK  +P       +  EII   TTGDK
Sbjct: 1   CVAVEQKTRTAIIRIGTRGSPLALAQAYETREKLKKKHPELVEDGAIHIEII--KTTGDK 58

Query: 63  ILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDA 122
           IL   L+ IG K LFTKE++ AL    +D+ VHS+KD+PT LP    +     RE+  DA
Sbjct: 59  ILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDA 118

Query: 123 VVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEF-RSIRGNLNTRLRKLDEQQ 181
            +        TL  LP  SVVGT+SLRR +Q+  K+P L    + RGN+ TRL KL +  
Sbjct: 119 FIC---LTAATLAELPAGSVVGTASLRRKSQILHKYPALHVEENFRGNVQTRLSKL-QGG 174

Query: 182 EFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDP 241
           +  A +LA AGL+R+     V  IL  +E + AV QGA+G+  R  D  +   +  L+  
Sbjct: 175 KVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMATYLASLNHE 234

Query: 242 ETLLRCIAERAFLRHLEGGCSVPVAVHTAM-KDGQLYLTGGVWSLDGSDSIQETMQATIH 300
           ET L    ERAFL  L+G C  P+A + +  ++G     G V S DG+  ++ + +    
Sbjct: 235 ETRLAISCERAFLETLDGSCRTPIAGYASKDEEGNCIFRGLVASPDGTKVLETSRKG--- 291

Query: 301 VPAQHED 307
            P  +ED
Sbjct: 292 -PYVYED 297


>3GPC-A nrPDB
          Length = 570

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 66  TALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENP------ 119
           + L K+ E S  +  L+  ++     L    +  + T+   G+ +  +C    P      
Sbjct: 218 SGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI--MWTISDTGWILNILCSLMEPWALGAC 275

Query: 120 ---HDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQ----RKFPHLE 162
              H    F P  + KTL + P KS++G   + R    Q     KFPHL+
Sbjct: 276 TFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQ 325


>1EZW-A nrPDB
          Length = 349

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 209 EECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAE 250
           E+   A+G+G  G  +   D+D+++   +  DP+T++  I E
Sbjct: 272 EQIAEAIGKGDFGTAIGLVDEDMIEAFSIAGDPDTVVDKIEE 313


>4CBV-A nrPDB
          Length = 256

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 78  TKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVF 125
            +E E  +E +EV+ +     D+  +   GF +  + +  NP+  +VF
Sbjct: 39  VREFEEYIENDEVNQLYFLAIDIHGIEKKGFEVAQLIRHYNPYAIIVF 86


>6JEB-A nrPDB
          Length = 469

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 172 TRLRKLDEQQEFSAIILATAGLQRMG------WHNRVGQILHPEECMYAVGQG 218
           TR    DEQ++  A    TA L          W+     I HP E +YA  QG
Sbjct: 275 TRAAMKDEQEQMKAFFAKTAALLAKNGQTPQFWYEGNAGIYHPGETVYAWRQG 327


>5N9Y-A nrPDB
          Length = 327

 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 262 SVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPE 310
           +VP AV   M DG+    GGV  L+ +D I E     +H+   H D  +
Sbjct: 10  NVPDAVFAWMLDGR----GGVKPLENTDVIDEAHPCWLHLNYVHHDSAQ 54


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3EQ1-A nrPDB                                                          573   e-164
5H6O-A nrPDB                                                          434   e-122
1YPN-A nrPDB                                                          428   e-120
4MLQ-A nrPDB                                                          386   e-107
4HTG-A nrPDB                                                          384   e-107

Sequences not found previously or not previously below threshold:

3DMP-A nrPDB                                                           35   0.069
4Q1T-A nrPDB                                                           30   1.4  
1NR0-A nrPDB                                                           30   2.2  
4DU6-A nrPDB                                                           29   4.1  


CONVERGED!
>3EQ1-A nrPDB
          Length = 361

 Score =  573 bits (1477), Expect = e-164,   Method: Composition-based stats.
 Identities = 360/361 (99%), Positives = 361/361 (100%)

Query: 1   MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG 60
           MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
Sbjct: 1   MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG 60

Query: 61  DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH 120
           DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
Sbjct: 61  DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH 120

Query: 121 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ 180
           DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSI+GNLNTRLRKLDEQ
Sbjct: 121 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIQGNLNTRLRKLDEQ 180

Query: 181 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD 240
           QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
Sbjct: 181 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD 240

Query: 241 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH 300
           PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
Sbjct: 241 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH 300

Query: 301 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA 360
           VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
Sbjct: 301 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA 360

Query: 361 H 361
           H
Sbjct: 361 H 361


>5H6O-A nrPDB
          Length = 317

 Score =  434 bits (1115), Expect = e-122,   Method: Composition-based stats.
 Identities = 136/332 (40%), Positives = 187/332 (56%), Gaps = 33/332 (9%)

Query: 21  IRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKE 80
           IR+ TR+S LA  Q + V   L A++PGLQ E++ M T GD ILDT L+K+G K LF KE
Sbjct: 12  IRIATRQSPLALWQANYVKDALMAAHPGLQVELVTMVTRGDVILDTPLAKVGGKGLFVKE 71

Query: 81  LEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEK 140
           LE A+ +   DL VHS+KD+P   P G  +  IC+RE+P DA V +       +E LP  
Sbjct: 72  LEIAMLEGRADLAVHSMKDVPVDFPDGLGLVTICEREDPRDAFVSNTY---AKIEDLPSG 128

Query: 141 SVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHN 200
           ++VGT SLRR  QL+   P L  + +RGN+ TRL KLD   E+ AIILA AGL+R+   +
Sbjct: 129 AIVGTCSLRRQCQLKAARPDLVIKELRGNVGTRLSKLD-AGEYDAIILAAAGLKRLELES 187

Query: 201 RVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGG 260
           R+   + PE+ + AVGQGA+G+E R  DQ +  L+  L+  +T  R   ERA    L+GG
Sbjct: 188 RIRSFIEPEQSLPAVGQGAVGIECRVNDQRVRALLAPLNHADTADRVRCERAMNLTLQGG 247

Query: 261 CSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITA 320
           C VP+  +  ++   ++L   V   DGS  +                             
Sbjct: 248 CQVPIGSYALLEGDTIWLRALVGEPDGSQIV----------------------------- 278

Query: 321 RNIPRGPQLAAQNLGISLANLLLSKGAKNILD 352
           R   RGP+  A+ LGI+LA  LLS+GAK IL+
Sbjct: 279 RGEIRGPRTQAEQLGITLAEQLLSQGAKEILE 310


>1YPN-A nrPDB
          Length = 313

 Score =  428 bits (1099), Expect = e-120,   Method: Composition-based stats.
 Identities = 144/332 (43%), Positives = 192/332 (57%), Gaps = 33/332 (9%)

Query: 20  VIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTK 79
           V+R+ TR+S LA  Q   V   L AS+PGL  E++ M T GD ILDT L+K+G + LF K
Sbjct: 5   VLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGQGLFVK 64

Query: 80  ELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPE 139
           ELE AL +N  D+ VHS+KD+P   P G  +  IC+RE+P DA V +      +L+ LP 
Sbjct: 65  ELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNY---DSLDALPA 121

Query: 140 KSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWH 199
            S+VGTSSLRR  QL  + P L  RS+RGN+ TRL KLD   E+ AIILA AGL+R+G  
Sbjct: 122 GSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD-NGEYDAIILAVAGLKRLGLE 180

Query: 200 NRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEG 259
           +R+   L PE  + AVGQGA+G+E R  D    +L+  L+  ET LR  AERA    LEG
Sbjct: 181 SRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEG 240

Query: 260 GCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGIT 319
           GC VP+  +  + DG+++L   V + DGS  I+           +    P+D        
Sbjct: 241 GCQVPIGSYAELIDGEIWLRALVGAPDGSQIIR----------GERRGAPQD-------- 282

Query: 320 ARNIPRGPQLAAQNLGISLANLLLSKGAKNIL 351
                      A+ +GISLA  LL+ GA+ IL
Sbjct: 283 -----------AEQMGISLAEELLNNGAREIL 303


>4MLQ-A nrPDB
          Length = 312

 Score =  386 bits (990), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/299 (44%), Positives = 178/299 (59%), Gaps = 6/299 (2%)

Query: 18  MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLF 77
           MR I VG+R+S+LA  QT  V+  LK      +FEI  M T GD+IL+  LSK+G K LF
Sbjct: 3   MRKIIVGSRRSKLALTQTKWVIEQLKKQGLPFEFEIKEMVTKGDQILNVTLSKVGGKGLF 62

Query: 78  TKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETL 137
            KE+E A+   E+D+ VHS+KD+P VLP G TIG I  RE+  DA++      G+  E L
Sbjct: 63  VKEIEQAMLDKEIDMAVHSMKDMPAVLPEGLTIGCIPLREDHRDALISKN---GERFEEL 119

Query: 138 PEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMG 197
           P  +V+GTSSLRR AQL      +E + IRGN++TRL KL + +++ AIILA AGL RMG
Sbjct: 120 PSGAVIGTSSLRRGAQLLSMRSDIEIKWIRGNIDTRLEKL-KNEDYDAIILAAAGLSRMG 178

Query: 198 W-HNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRH 256
           W  + V Q L PE  + AVGQGAL +E R  D ++L L+  L+  ET     AER FL+ 
Sbjct: 179 WSKDTVTQYLEPEISVPAVGQGALAIECRENDHELLSLLQALNHDETARAVRAERVFLKE 238

Query: 257 LEGGCSVPVAVHTAMKD-GQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQ 314
           +EGGC VP+A +  + D G + LT  V S DG    +E +     +    E       Q
Sbjct: 239 MEGGCQVPIAGYGRILDGGNIELTSLVASPDGKTIYKEHITGKDPIAIGSEAAERLTSQ 297


>4HTG-A nrPDB
          Length = 320

 Score =  384 bits (985), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 161/307 (52%), Gaps = 18/307 (5%)

Query: 9   ATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYP------GLQFEIIAMSTTGDK 62
             A E   +  +IR+GTR S LA  Q       LK  +P       +  EII   TTGDK
Sbjct: 1   CVAVEQKTRTAIIRIGTRGSPLALAQAYETREKLKKKHPELVEDGAIHIEII--KTTGDK 58

Query: 63  ILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDA 122
           IL   L+ IG K LFTKE++ AL    +D+ VHS+KD+PT LP    +     RE+  DA
Sbjct: 59  ILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDA 118

Query: 123 VVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFR-SIRGNLNTRLRKLDEQQ 181
            +        TL  LP  SVVGT+SLRR +Q+  K+P L    + RGN+ TRL KL +  
Sbjct: 119 FIC---LTAATLAELPAGSVVGTASLRRKSQILHKYPALHVEENFRGNVQTRLSKL-QGG 174

Query: 182 EFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDP 241
           +  A +LA AGL+R+     V  IL  +E + AV QGA+G+  R  D  +   +  L+  
Sbjct: 175 KVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMATYLASLNHE 234

Query: 242 ETLLRCIAERAFLRHLEGGCSVPVAVHTAM-KDGQLYLTGGVWSLDGSDSIQETMQATIH 300
           ET L    ERAFL  L+G C  P+A + +  ++G     G V S DG+  ++ + +    
Sbjct: 235 ETRLAISCERAFLETLDGSCRTPIAGYASKDEEGNCIFRGLVASPDGTKVLETSRKG--- 291

Query: 301 VPAQHED 307
            P  +ED
Sbjct: 292 -PYVYED 297


>3DMP-A nrPDB
          Length = 217

 Score = 34.7 bits (78), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 1/107 (0%)

Query: 210 ECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPVAVHT 269
           E + +   G +GV  RA D   ++ +  L D E  +  + +           ++ V    
Sbjct: 97  ELIPSARVGHIGVY-RADDHRPVEYLVRLPDLEDRIFILCDPMVATGYSAAHAIDVLKRR 155

Query: 270 AMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLV 316
            +   +L     V + +G    Q+         A  +   +D   +V
Sbjct: 156 GVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIV 202


>4Q1T-A nrPDB
          Length = 376

 Score = 30.5 bits (67), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 190 TAGLQRMGWHNRVGQILHPEECMYAVGQGALG--VEVRAKDQDILDLVGVLHDPETLLR 246
             G+QR+GW  R  +I    +   AVGQ  L    E R  +  I     +L   +   R
Sbjct: 62  AEGMQRLGWSRRPREIDEL-QAAAAVGQMGLAQVYESRFAEHGIRTAQILLTHADLADR 119


>1NR0-A nrPDB
          Length = 611

 Score = 29.7 bits (65), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 280 GGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLA 339
           G  WS DG+     +   TI +        E          + IP G ++  Q LGI   
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVE----------KTIPVGTRIEDQQLGIIWT 293

Query: 340 NLLL 343
              L
Sbjct: 294 KQAL 297


>4DU6-A nrPDB
          Length = 223

 Score = 28.5 bits (62), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 37  SVVATLKASYPGLQFEIIAMSTTGDKILDTA--LSKIGEKSLFTKELEHALEKN---EVD 91
               T   ++      ++ +  T D + DT   ++K     ++  E+   L+     ++ 
Sbjct: 35  ETRKTRIQAHMTEVMHLLNLDLTDDSLADTPRRIAK-----MYVDEIFSGLDYENFPKIT 89

Query: 92  LVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRA 151
           L+ + +K    V     T+ + C+         F       T+  +P+ SV+G S + R 
Sbjct: 90  LIQNKMKVDEMVTVRDITLTSTCEHH-------FVTIDGKATVAYIPKDSVIGLSKINRI 142

Query: 152 AQLQRKFPHLEFR 164
            Q   + P ++ R
Sbjct: 143 VQFFAQRPQVQER 155


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.311    0.129    0.334 

Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,861,438
Number of Sequences: 36641
Number of extensions: 494911
Number of successful extensions: 1300
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 25
length of query: 361
length of database: 10,336,785
effective HSP length: 98
effective length of query: 263
effective length of database: 6,745,967
effective search space: 1774189321
effective search space used: 1774189321
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 60 (27.8 bits)