BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P08202 (500 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2AJT-A nrPDB 1040 0.0 4R1O-A nrPDB 636 0.0 4LQL-A nrPDB 425 e-119 3EU4-A nrPDB 35 0.057 6CXM-A nrPDB 35 0.097 3VIK-A nrPDB 32 0.59 1TQ1-A nrPDB 29 5.0 4Q1V-A nrPDB 29 5.7 >2AJT-A nrPDB Length = 500 Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/500 (99%), Positives = 498/500 (99%) Query: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI Sbjct: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60 Query: 61 TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 TAICRDANYDD CAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF Sbjct: 61 TAICRDANYDDPCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR Sbjct: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT Sbjct: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 PATQIHG+KRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG Sbjct: 241 PATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIA Sbjct: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAV 360 Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP Sbjct: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420 Query: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT Sbjct: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480 Query: 481 RLPAFKDALRWNEVYYGFRR 500 RLPAFKDALRWNEVYYGFRR Sbjct: 481 RLPAFKDALRWNEVYYGFRR 500 >4R1O-A nrPDB Length = 497 Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust. Identities = 300/493 (60%), Positives = 373/493 (75%), Gaps = 3/493 (0%) Query: 7 YEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRD 66 YE WFV GSQHLYG E L+QV +H+ +VN N ++ P V K + TTP+EI +C + Sbjct: 8 YEFWFVTGSQHLYGEEALKQVEEHSRIMVNEWNRDSVFPFPFVFKSVVTTPEEIRRVCLE 67 Query: 67 ANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQT 126 AN ++CAG+V W+HTFSPAKMWI GL L KPLL HTQFN +PWDSIDMDFMNLNQ+ Sbjct: 68 ANASEQCAGVVTWMHTFSPAKMWIGGLLELRKPLLHLHTQFNRDIPWDSIDMDFMNLNQS 127 Query: 127 AHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMR 186 AHG RE+GFIGARM VV GHW+D + ER+ WMR AV+ ++R+LKV RFGDNMR Sbjct: 128 AHGDREYGFIGARMGVARKVVVGHWEDPEVRERLAKWMRTAVAFAESRNLKVARFGDNMR 187 Query: 187 EVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIH 246 EVAVT+GDKV AQI+FG+SVN + +GDLVQ + +S+ VN L+DEYE Y + PA + Sbjct: 188 EVAVTEGDKVGAQIQFGWSVNGYGIGDLVQYIRDVSEQKVNELLDEYEELYDIVPAGRQE 247 Query: 247 GKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGE 306 G R+++ E ARIELG+K FL+ G F AFTTTFEDLHG+KQLPGLAVQRLM +GYGF GE Sbjct: 248 GPVRESIREQARIELGLKAFLQDGNFTAFTTTFEDLHGMKQLPGLAVQRLMAEGYGFGGE 307 Query: 307 GDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPIL 366 GDWKTAAL+R+MKVM+ G GTSFMEDYTYHFE GN+L+LG+HMLEVCP+IAA +P + Sbjct: 308 GDWKTAALVRLMKVMADG--KGTSFMEDYTYHFEPGNELILGAHMLEVCPTIAA-TRPRV 364 Query: 367 DVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVAN 426 +V L IGGK+DPARL+F+ G A+ ASLIDLG R+RL+VN +D VK H +PKLPVA Sbjct: 365 EVHPLSIGGKEDPARLVFDGGEGAAVNASLIDLGHRFRLIVNEVDAVKPEHDMPKLPVAR 424 Query: 427 ALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFK 486 LWK +P L ++EAWILAGGAHHT FS A+ ++ FAEM IE VI+ T + +FK Sbjct: 425 ILWKPRPSLRDSAEAWILAGGAHHTCFSFAVTTEQLQDFAEMAGIECVVINEHTSVSSFK 484 Query: 487 DALRWNEVYYGFR 499 + L+WNEV++ R Sbjct: 485 NELKWNEVFWRGR 497 >4LQL-A nrPDB Length = 474 Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust. Identities = 214/477 (44%), Positives = 300/477 (62%), Gaps = 5/477 (1%) Query: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60 M +Y+ WFV+GSQ LYGPE L +V + A +V+ LN KL + K + TT D I Sbjct: 1 MRKMQDYKFWFVVGSQPLYGPEALAEVEKDARKLVDGLNKGGKLDYPVEFKLVATTADSI 60 Query: 61 TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 T ++ANY+D AG++ W+HTFSPAK WI G +L KPLL TQF +P+DSIDMD+ Sbjct: 61 TKFMKEANYNDDVAGVITWMHTFSPAKNWIRGTELLQKPLLHLATQFLNNIPFDSIDMDY 120 Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 MNL+Q+AHG RE+ +I +R+ A V G W D E+I W AV+ ++ H+K+ R Sbjct: 121 MNLHQSAHGDREYAYINSRLNVPAASVYGWWGDADVQEQIADWQHVAVAYNESFHIKIAR 180 Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 FGD MR+VAVT+GDKVAAQIK G++V+ + +LV VVN I++ +++A + E+ Y + Sbjct: 181 FGDTMRDVAVTEGDKVAAQIKLGWTVDYYPTNELVAVVNGIAEDEIDAAYKDLEANYDLV 240 Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 H K NV R LG+K+FL+ G+ AFT F+DL GL+QLPGLAVQ LM G Sbjct: 241 EGDNDHEKYVHNVRYQLREYLGIKKFLDDNGYDAFTDNFQDLEGLEQLPGLAVQLLMIDG 300 Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360 YGF EGD+K A L R++K+ + Q T+ MEDYT G++ ++GSHMLEV P++A+ Sbjct: 301 YGFGPEGDFKMAGLTRLLKIAADNKQ--TALMEDYTLDLRHGHEAIMGSHMLEVDPTLAS 358 Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHS-L 419 +KP ++V LGIGGKDDPARL+F G +L D Y+ + +D KTP + + Sbjct: 359 -DKPRVEVHPLGIGGKDDPARLVFTGAEGKGYDITLSYFDDGYKFIGYPVD-CKTPEAEM 416 Query: 420 PKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVI 476 PKLPVA +W + L ++ W+ GG HHTV + AL+ + Q A + ++ I Sbjct: 417 PKLPVAKQMWTPEIGLAEGAKQWMKYGGGHHTVLTLALSEEQLEQLARLFKVDFINI 473 >3EU4-A nrPDB Length = 202 Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 17/119 (14%) Query: 340 EKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDL 399 E+GND V G ++ P + ++ P+ V+ G P+ +FN+ P I ID Sbjct: 6 EQGNDAVSGQPSIKGQPVLGKDDAPVTVVE---FGDYKCPSCKVFNSDIFPKIQKDFIDK 62 Query: 400 GDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPD------------LPTASEAWILAG 446 GD VN + K L L + +WK PD P + W+ G Sbjct: 63 GDVKFSFVNVMFHGKGSR-LAAL-ASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPG 119 >6CXM-A nrPDB Length = 164 Score = 34.7 bits (78), Expect = 0.097, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 434 DLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDA 488 DLP +AW++ G +++ AL D + E+ DI +T +D D R P D+ Sbjct: 90 DLPDEPDAWVIGGA---QIYAMALARADRCEVTEV-DIALTPLDGDARAPVLDDS 140 >3VIK-A nrPDB Length = 487 Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 146 VVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVC--RFGDNMR-----EVAVTDGDKVAA 198 V HW QA + +G W ++K + +V FGD ++ +T D A+ Sbjct: 125 VTMYHWDLPQALQDLGGWPNLVLAKYSENYARVLFKNFGDRVKLWLTFNSPLTFMDGYAS 184 Query: 199 QIKFGFSVNTWAVGDLV 215 +I S+NT +GD + Sbjct: 185 EIGMAPSINTPGIGDYL 201 >1TQ1-A nrPDB Length = 129 Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 318 MKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKD 377 M ++G+ T F+E + HF + +++++G C S K D+ H G G Sbjct: 58 MNRGASGMSKNTDFLEQVSSHFGQSDNIIVG------CQSGGRSIKATTDLLHAGFTGVK 111 Query: 378 D 378 D Sbjct: 112 D 112 >4Q1V-A nrPDB Length = 710 Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 285 LKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGG 328 LK LP + +R+ G+ F G TA +LR ++ G+ GG Sbjct: 564 LKSLPYVDSERIGVHGWSFGGH--MTTALMLRYPEIFKVGVAGG 605 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2AJT-A nrPDB 916 0.0 4R1O-A nrPDB 842 0.0 4LQL-A nrPDB 756 0.0 Sequences not found previously or not previously below threshold: 3VIK-A nrPDB 31 1.2 6MZD-C nrPDB 30 3.4 3QQ2-A nrPDB 29 4.1 3TTS-A nrPDB 29 4.2 2N5T-A nrPDB 29 4.4 1E3D-B nrPDB 28 8.2 2CZ2-A nrPDB 28 8.6 5VVM-A nrPDB 28 9.1 3EC2-A nrPDB 28 9.5 CONVERGED! >2AJT-A nrPDB Length = 500 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 497/500 (99%), Positives = 498/500 (99%) Query: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI Sbjct: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60 Query: 61 TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 TAICRDANYDD CAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF Sbjct: 61 TAICRDANYDDPCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR Sbjct: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT Sbjct: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 PATQIHG+KRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG Sbjct: 241 PATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIA Sbjct: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAV 360 Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP Sbjct: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420 Query: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT Sbjct: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480 Query: 481 RLPAFKDALRWNEVYYGFRR 500 RLPAFKDALRWNEVYYGFRR Sbjct: 481 RLPAFKDALRWNEVYYGFRR 500 >4R1O-A nrPDB Length = 497 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 301/499 (60%), Positives = 374/499 (74%), Gaps = 3/499 (0%) Query: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60 M YE WFV GSQHLYG E L+QV +H+ +VN N ++ P V K + TTP+EI Sbjct: 2 MLSLRPYEFWFVTGSQHLYGEEALKQVEEHSRIMVNEWNRDSVFPFPFVFKSVVTTPEEI 61 Query: 61 TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 +C +AN ++CAG+V W+HTFSPAKMWI GL L KPLL HTQFN +PWDSIDMDF Sbjct: 62 RRVCLEANASEQCAGVVTWMHTFSPAKMWIGGLLELRKPLLHLHTQFNRDIPWDSIDMDF 121 Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 MNLNQ+AHG RE+GFIGARM VV GHW+D + ER+ WMR AV+ ++R+LKV R Sbjct: 122 MNLNQSAHGDREYGFIGARMGVARKVVVGHWEDPEVRERLAKWMRTAVAFAESRNLKVAR 181 Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 FGDNMREVAVT+GDKV AQI+FG+SVN + +GDLVQ + +S+ VN L+DEYE Y + Sbjct: 182 FGDNMREVAVTEGDKVGAQIQFGWSVNGYGIGDLVQYIRDVSEQKVNELLDEYEELYDIV 241 Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 PA + G R+++ E ARIELG+K FL+ G F AFTTTFEDLHG+KQLPGLAVQRLM +G Sbjct: 242 PAGRQEGPVRESIREQARIELGLKAFLQDGNFTAFTTTFEDLHGMKQLPGLAVQRLMAEG 301 Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360 YGF GEGDWKTAAL+R+MKVM+ G GTSFMEDYTYHFE GN+L+LG+HMLEVCP+IAA Sbjct: 302 YGFGGEGDWKTAALVRLMKVMADGK--GTSFMEDYTYHFEPGNELILGAHMLEVCPTIAA 359 Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420 +P ++V L IGGK+DPARL+F+ G A+ ASLIDLG R+RL+VN +D VK H +P Sbjct: 360 -TRPRVEVHPLSIGGKEDPARLVFDGGEGAAVNASLIDLGHRFRLIVNEVDAVKPEHDMP 418 Query: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480 KLPVA LWK +P L ++EAWILAGGAHHT FS A+ ++ FAEM IE VI+ T Sbjct: 419 KLPVARILWKPRPSLRDSAEAWILAGGAHHTCFSFAVTTEQLQDFAEMAGIECVVINEHT 478 Query: 481 RLPAFKDALRWNEVYYGFR 499 + +FK+ L+WNEV++ R Sbjct: 479 SVSSFKNELKWNEVFWRGR 497 >4LQL-A nrPDB Length = 474 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 214/477 (44%), Positives = 300/477 (62%), Gaps = 5/477 (1%) Query: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60 M +Y+ WFV+GSQ LYGPE L +V + A +V+ LN KL + K + TT D I Sbjct: 1 MRKMQDYKFWFVVGSQPLYGPEALAEVEKDARKLVDGLNKGGKLDYPVEFKLVATTADSI 60 Query: 61 TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 T ++ANY+D AG++ W+HTFSPAK WI G +L KPLL TQF +P+DSIDMD+ Sbjct: 61 TKFMKEANYNDDVAGVITWMHTFSPAKNWIRGTELLQKPLLHLATQFLNNIPFDSIDMDY 120 Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 MNL+Q+AHG RE+ +I +R+ A V G W D E+I W AV+ ++ H+K+ R Sbjct: 121 MNLHQSAHGDREYAYINSRLNVPAASVYGWWGDADVQEQIADWQHVAVAYNESFHIKIAR 180 Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 FGD MR+VAVT+GDKVAAQIK G++V+ + +LV VVN I++ +++A + E+ Y + Sbjct: 181 FGDTMRDVAVTEGDKVAAQIKLGWTVDYYPTNELVAVVNGIAEDEIDAAYKDLEANYDLV 240 Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 H K NV R LG+K+FL+ G+ AFT F+DL GL+QLPGLAVQ LM G Sbjct: 241 EGDNDHEKYVHNVRYQLREYLGIKKFLDDNGYDAFTDNFQDLEGLEQLPGLAVQLLMIDG 300 Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360 YGF EGD+K A L R++K+ + Q T+ MEDYT G++ ++GSHMLEV P++A+ Sbjct: 301 YGFGPEGDFKMAGLTRLLKIAADNKQ--TALMEDYTLDLRHGHEAIMGSHMLEVDPTLAS 358 Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHS-L 419 +KP ++V LGIGGKDDPARL+F G +L D Y+ + +D KTP + + Sbjct: 359 -DKPRVEVHPLGIGGKDDPARLVFTGAEGKGYDITLSYFDDGYKFIGYPVD-CKTPEAEM 416 Query: 420 PKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVI 476 PKLPVA +W + L ++ W+ GG HHTV + AL+ + Q A + ++ I Sbjct: 417 PKLPVAKQMWTPEIGLAEGAKQWMKYGGGHHTVLTLALSEEQLEQLARLFKVDFINI 473 >3VIK-A nrPDB Length = 487 Score = 31.1 bits (69), Expect = 1.2, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Query: 141 RQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVC--RFGDNMR-----EVAVTDG 193 + V HW QA + +G W ++K + +V FGD ++ +T Sbjct: 120 GIEPMVTMYHWDLPQALQDLGGWPNLVLAKYSENYARVLFKNFGDRVKLWLTFNSPLTFM 179 Query: 194 DKVAAQIKFGFSVNTWAVGDLVQ 216 D A++I S+NT +GD + Sbjct: 180 DGYASEIGMAPSINTPGIGDYLA 202 >6MZD-C nrPDB Length = 929 Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%) Query: 393 VASLIDLGDRYRLLV----------NCIDTVKTPHSLPKLPVA--NALWKAQPDLPTASE 440 L D+G+ ++L+ + I+ V PH +P PV+ N L QP A E Sbjct: 60 DPILDDVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEE 119 >3QQ2-A nrPDB Length = 284 Score = 29.2 bits (64), Expect = 4.1, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 126 TAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVC-RFGDN 184 + GGR F + A V W+ R + +R V ++ RFG Sbjct: 141 SLEGGRRFELPNDWFAEPQAEVM-LWRTSGKRYRASNGLRVKVDANTATLGRLGLRFG-- 197 Query: 185 MREVAVTDGDKVAAQIKFGFSVNTWAVGDL 214 R +A+ G+ V + G++ + GD+ Sbjct: 198 -RRIALAGGNIVQPYARLGWTQEFKSTGDV 226 >3TTS-A nrPDB Length = 675 Score = 29.2 bits (64), Expect = 4.2, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 12/131 (9%) Query: 381 RLIFNTQTGPAIVASLIDLGDRYRLLVN----CIDTVKTPHSLPKLPV--ANALWKAQPD 434 R +GP+I + ++ +Y + D + L K V A ++ +P Sbjct: 408 RWALELSSGPSIALNYVNEVHKYYDALYKQNIQTDMISVEEDLSKYKVVIAPVMYMVKPG 467 Query: 435 LPTASEAWILAGGAH-HTVFSHALNLNDMRQF----AEMHDIEITVIDN-DTRLPAFKDA 488 E ++ GG T FS +N ND+ E+ ++ + D LP ++ Sbjct: 468 FAERVERFVAQGGTFVTTFFSGIVNENDLVTLGGYPGELRNVMGIWAEEIDALLPGHQNE 527 Query: 489 LRWNEVYYGFR 499 + + + G R Sbjct: 528 IVLRQDWGGLR 538 >2N5T-A nrPDB Length = 575 Score = 29.2 bits (64), Expect = 4.4, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 10/137 (7%) Query: 242 ATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGY 301 A +I +R+ + + R L F + + E++ L++ + Q L +G Sbjct: 359 AIRIAMDRREILRDQLRAILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQELRDEGK 418 Query: 302 GFAGEGDW-------KTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLE- 353 F + A + R + GT+ + YT ++GND++ SH+ + Sbjct: 419 AFDESIEIGVMVETPAAATIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMI--SHLYQP 476 Query: 354 VCPSIAAEEKPILDVQH 370 + PS+ K ++D H Sbjct: 477 MSPSVLNLIKQVIDASH 493 >1E3D-B nrPDB Length = 542 Score = 28.4 bits (62), Expect = 8.2, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 16/156 (10%) Query: 324 GLQGGTSFMEDYTYHFEKGN--DLVLGSHMLEVCPS----IAAEEKPILDVQHLGIGGKD 377 L G FM D+ HF + D V + L P+ +A P + Sbjct: 103 NLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQA 162 Query: 378 DPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKL----PVANALWKAQP 433 + + Q GP A + + Y + + V T H L L VA + A Sbjct: 163 KLKTFVASGQLGPFTNAYFLGGHEGY-YMDPEANLVCTAHYLQALRAQVEVAKGM--AVF 219 Query: 434 DLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMH 469 + +AGG T + AL ++QF E++ Sbjct: 220 GAKNPHTQFTVAGGV--TCYE-ALTPERIKQFRELY 252 >2CZ2-A nrPDB Length = 223 Score = 28.1 bits (61), Expect = 8.6, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 10/54 (18%) Query: 249 KRQNVLEAARIELGMK---------RFLEQGGFHAFTTTFEDLHGLKQLPGLAV 293 R + RI L +K ++ GG FT F+ L+ +KQ+P L + Sbjct: 19 FRSSCSWRVRIALALKGIDYEIVPINLIKDGG-QQFTEEFQTLNPMKQVPALKI 71 >5VVM-A nrPDB Length = 346 Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 364 PILDVQHLGIGGKDDPARLIFNTQTGPAIVAS 395 P L+ +GI KDD RL+ N + A+ + Sbjct: 38 PKLEYHIVGIVAKDDTDRLVPNQEDAFAVNIN 69 >3EC2-A nrPDB Length = 180 Score = 28.1 bits (61), Expect = 9.5, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 20/105 (19%) Query: 78 VWLHTFSPAKMWINGLTMLNKPLL---QFHTQFNAALP---------WDSIDMDFMNLNQ 125 V++H F+P + GLT + P + A+ +D+ D+ F L Sbjct: 28 VFVHNFNPEEG--KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF-RLKH 84 Query: 126 TAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSK 170 G++ F+ + V+ D ER+ W R+ +S Sbjct: 85 LMDEGKDTKFLKTVLNSPVLVL-----DDLGSERLSDWQRELISY 124 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.316 0.138 0.403 Lambda K H 0.267 0.0425 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,470,754 Number of Sequences: 36641 Number of extensions: 911021 Number of successful extensions: 2129 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 2109 Number of HSP's gapped (non-prelim): 29 length of query: 500 length of database: 10,336,785 effective HSP length: 101 effective length of query: 399 effective length of database: 6,636,044 effective search space: 2647781556 effective search space used: 2647781556 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 61 (28.1 bits)