BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P08202
         (500 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2AJT-A nrPDB                                                         1040   0.0  
4R1O-A nrPDB                                                          636   0.0  
4LQL-A nrPDB                                                          425   e-119
3EU4-A nrPDB                                                           35   0.057
6CXM-A nrPDB                                                           35   0.097
3VIK-A nrPDB                                                           32   0.59 
1TQ1-A nrPDB                                                           29   5.0  
4Q1V-A nrPDB                                                           29   5.7  

>2AJT-A nrPDB
          Length = 500

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/500 (99%), Positives = 498/500 (99%)

Query: 1   MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60
           MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI
Sbjct: 1   MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60

Query: 61  TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120
           TAICRDANYDD CAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF
Sbjct: 61  TAICRDANYDDPCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120

Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180
           MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR
Sbjct: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180

Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240
           FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT
Sbjct: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240

Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300
           PATQIHG+KRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG
Sbjct: 241 PATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300

Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360
           YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIA 
Sbjct: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAV 360

Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420
           EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP
Sbjct: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420

Query: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480
           KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT
Sbjct: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480

Query: 481 RLPAFKDALRWNEVYYGFRR 500
           RLPAFKDALRWNEVYYGFRR
Sbjct: 481 RLPAFKDALRWNEVYYGFRR 500


>4R1O-A nrPDB
          Length = 497

 Score =  636 bits (1641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/493 (60%), Positives = 373/493 (75%), Gaps = 3/493 (0%)

Query: 7   YEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRD 66
           YE WFV GSQHLYG E L+QV +H+  +VN  N ++  P   V K + TTP+EI  +C +
Sbjct: 8   YEFWFVTGSQHLYGEEALKQVEEHSRIMVNEWNRDSVFPFPFVFKSVVTTPEEIRRVCLE 67

Query: 67  ANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQT 126
           AN  ++CAG+V W+HTFSPAKMWI GL  L KPLL  HTQFN  +PWDSIDMDFMNLNQ+
Sbjct: 68  ANASEQCAGVVTWMHTFSPAKMWIGGLLELRKPLLHLHTQFNRDIPWDSIDMDFMNLNQS 127

Query: 127 AHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMR 186
           AHG RE+GFIGARM     VV GHW+D +  ER+  WMR AV+  ++R+LKV RFGDNMR
Sbjct: 128 AHGDREYGFIGARMGVARKVVVGHWEDPEVRERLAKWMRTAVAFAESRNLKVARFGDNMR 187

Query: 187 EVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIH 246
           EVAVT+GDKV AQI+FG+SVN + +GDLVQ +  +S+  VN L+DEYE  Y + PA +  
Sbjct: 188 EVAVTEGDKVGAQIQFGWSVNGYGIGDLVQYIRDVSEQKVNELLDEYEELYDIVPAGRQE 247

Query: 247 GKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGE 306
           G  R+++ E ARIELG+K FL+ G F AFTTTFEDLHG+KQLPGLAVQRLM +GYGF GE
Sbjct: 248 GPVRESIREQARIELGLKAFLQDGNFTAFTTTFEDLHGMKQLPGLAVQRLMAEGYGFGGE 307

Query: 307 GDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPIL 366
           GDWKTAAL+R+MKVM+ G   GTSFMEDYTYHFE GN+L+LG+HMLEVCP+IAA  +P +
Sbjct: 308 GDWKTAALVRLMKVMADG--KGTSFMEDYTYHFEPGNELILGAHMLEVCPTIAA-TRPRV 364

Query: 367 DVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVAN 426
           +V  L IGGK+DPARL+F+   G A+ ASLIDLG R+RL+VN +D VK  H +PKLPVA 
Sbjct: 365 EVHPLSIGGKEDPARLVFDGGEGAAVNASLIDLGHRFRLIVNEVDAVKPEHDMPKLPVAR 424

Query: 427 ALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFK 486
            LWK +P L  ++EAWILAGGAHHT FS A+    ++ FAEM  IE  VI+  T + +FK
Sbjct: 425 ILWKPRPSLRDSAEAWILAGGAHHTCFSFAVTTEQLQDFAEMAGIECVVINEHTSVSSFK 484

Query: 487 DALRWNEVYYGFR 499
           + L+WNEV++  R
Sbjct: 485 NELKWNEVFWRGR 497


>4LQL-A nrPDB
          Length = 474

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/477 (44%), Positives = 300/477 (62%), Gaps = 5/477 (1%)

Query: 1   MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60
           M    +Y+ WFV+GSQ LYGPE L +V + A  +V+ LN   KL   +  K + TT D I
Sbjct: 1   MRKMQDYKFWFVVGSQPLYGPEALAEVEKDARKLVDGLNKGGKLDYPVEFKLVATTADSI 60

Query: 61  TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120
           T   ++ANY+D  AG++ W+HTFSPAK WI G  +L KPLL   TQF   +P+DSIDMD+
Sbjct: 61  TKFMKEANYNDDVAGVITWMHTFSPAKNWIRGTELLQKPLLHLATQFLNNIPFDSIDMDY 120

Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180
           MNL+Q+AHG RE+ +I +R+    A V G W D    E+I  W   AV+  ++ H+K+ R
Sbjct: 121 MNLHQSAHGDREYAYINSRLNVPAASVYGWWGDADVQEQIADWQHVAVAYNESFHIKIAR 180

Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240
           FGD MR+VAVT+GDKVAAQIK G++V+ +   +LV VVN I++ +++A   + E+ Y + 
Sbjct: 181 FGDTMRDVAVTEGDKVAAQIKLGWTVDYYPTNELVAVVNGIAEDEIDAAYKDLEANYDLV 240

Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300
                H K   NV    R  LG+K+FL+  G+ AFT  F+DL GL+QLPGLAVQ LM  G
Sbjct: 241 EGDNDHEKYVHNVRYQLREYLGIKKFLDDNGYDAFTDNFQDLEGLEQLPGLAVQLLMIDG 300

Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360
           YGF  EGD+K A L R++K+ +   Q  T+ MEDYT     G++ ++GSHMLEV P++A+
Sbjct: 301 YGFGPEGDFKMAGLTRLLKIAADNKQ--TALMEDYTLDLRHGHEAIMGSHMLEVDPTLAS 358

Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHS-L 419
            +KP ++V  LGIGGKDDPARL+F    G     +L    D Y+ +   +D  KTP + +
Sbjct: 359 -DKPRVEVHPLGIGGKDDPARLVFTGAEGKGYDITLSYFDDGYKFIGYPVD-CKTPEAEM 416

Query: 420 PKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVI 476
           PKLPVA  +W  +  L   ++ W+  GG HHTV + AL+   + Q A +  ++   I
Sbjct: 417 PKLPVAKQMWTPEIGLAEGAKQWMKYGGGHHTVLTLALSEEQLEQLARLFKVDFINI 473


>3EU4-A nrPDB
          Length = 202

 Score = 35.4 bits (80), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 17/119 (14%)

Query: 340 EKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDL 399
           E+GND V G   ++  P +  ++ P+  V+    G    P+  +FN+   P I    ID 
Sbjct: 6   EQGNDAVSGQPSIKGQPVLGKDDAPVTVVE---FGDYKCPSCKVFNSDIFPKIQKDFIDK 62

Query: 400 GDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPD------------LPTASEAWILAG 446
           GD     VN +   K    L  L  +  +WK  PD             P   + W+  G
Sbjct: 63  GDVKFSFVNVMFHGKGSR-LAAL-ASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPG 119


>6CXM-A nrPDB
          Length = 164

 Score = 34.7 bits (78), Expect = 0.097,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 434 DLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDA 488
           DLP   +AW++ G     +++ AL   D  +  E+ DI +T +D D R P   D+
Sbjct: 90  DLPDEPDAWVIGGA---QIYAMALARADRCEVTEV-DIALTPLDGDARAPVLDDS 140


>3VIK-A nrPDB
          Length = 487

 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 146 VVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVC--RFGDNMR-----EVAVTDGDKVAA 198
           V   HW   QA + +G W    ++K    + +V    FGD ++        +T  D  A+
Sbjct: 125 VTMYHWDLPQALQDLGGWPNLVLAKYSENYARVLFKNFGDRVKLWLTFNSPLTFMDGYAS 184

Query: 199 QIKFGFSVNTWAVGDLV 215
           +I    S+NT  +GD +
Sbjct: 185 EIGMAPSINTPGIGDYL 201


>1TQ1-A nrPDB
          Length = 129

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 318 MKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKD 377
           M   ++G+   T F+E  + HF + +++++G      C S     K   D+ H G  G  
Sbjct: 58  MNRGASGMSKNTDFLEQVSSHFGQSDNIIVG------CQSGGRSIKATTDLLHAGFTGVK 111

Query: 378 D 378
           D
Sbjct: 112 D 112


>4Q1V-A nrPDB
          Length = 710

 Score = 28.9 bits (63), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 285 LKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGG 328
           LK LP +  +R+   G+ F G     TA +LR  ++   G+ GG
Sbjct: 564 LKSLPYVDSERIGVHGWSFGGH--MTTALMLRYPEIFKVGVAGG 605


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2AJT-A nrPDB                                                          916   0.0  
4R1O-A nrPDB                                                          842   0.0  
4LQL-A nrPDB                                                          756   0.0  

Sequences not found previously or not previously below threshold:

3VIK-A nrPDB                                                           31   1.2  
6MZD-C nrPDB                                                           30   3.4  
3QQ2-A nrPDB                                                           29   4.1  
3TTS-A nrPDB                                                           29   4.2  
2N5T-A nrPDB                                                           29   4.4  
1E3D-B nrPDB                                                           28   8.2  
2CZ2-A nrPDB                                                           28   8.6  
5VVM-A nrPDB                                                           28   9.1  
3EC2-A nrPDB                                                           28   9.5  


CONVERGED!
>2AJT-A nrPDB
          Length = 500

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/500 (99%), Positives = 498/500 (99%)

Query: 1   MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60
           MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI
Sbjct: 1   MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60

Query: 61  TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120
           TAICRDANYDD CAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF
Sbjct: 61  TAICRDANYDDPCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120

Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180
           MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR
Sbjct: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180

Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240
           FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT
Sbjct: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240

Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300
           PATQIHG+KRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG
Sbjct: 241 PATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300

Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360
           YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIA 
Sbjct: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAV 360

Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420
           EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP
Sbjct: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420

Query: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480
           KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT
Sbjct: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480

Query: 481 RLPAFKDALRWNEVYYGFRR 500
           RLPAFKDALRWNEVYYGFRR
Sbjct: 481 RLPAFKDALRWNEVYYGFRR 500


>4R1O-A nrPDB
          Length = 497

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/499 (60%), Positives = 374/499 (74%), Gaps = 3/499 (0%)

Query: 1   MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60
           M     YE WFV GSQHLYG E L+QV +H+  +VN  N ++  P   V K + TTP+EI
Sbjct: 2   MLSLRPYEFWFVTGSQHLYGEEALKQVEEHSRIMVNEWNRDSVFPFPFVFKSVVTTPEEI 61

Query: 61  TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120
             +C +AN  ++CAG+V W+HTFSPAKMWI GL  L KPLL  HTQFN  +PWDSIDMDF
Sbjct: 62  RRVCLEANASEQCAGVVTWMHTFSPAKMWIGGLLELRKPLLHLHTQFNRDIPWDSIDMDF 121

Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180
           MNLNQ+AHG RE+GFIGARM     VV GHW+D +  ER+  WMR AV+  ++R+LKV R
Sbjct: 122 MNLNQSAHGDREYGFIGARMGVARKVVVGHWEDPEVRERLAKWMRTAVAFAESRNLKVAR 181

Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240
           FGDNMREVAVT+GDKV AQI+FG+SVN + +GDLVQ +  +S+  VN L+DEYE  Y + 
Sbjct: 182 FGDNMREVAVTEGDKVGAQIQFGWSVNGYGIGDLVQYIRDVSEQKVNELLDEYEELYDIV 241

Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300
           PA +  G  R+++ E ARIELG+K FL+ G F AFTTTFEDLHG+KQLPGLAVQRLM +G
Sbjct: 242 PAGRQEGPVRESIREQARIELGLKAFLQDGNFTAFTTTFEDLHGMKQLPGLAVQRLMAEG 301

Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360
           YGF GEGDWKTAAL+R+MKVM+ G   GTSFMEDYTYHFE GN+L+LG+HMLEVCP+IAA
Sbjct: 302 YGFGGEGDWKTAALVRLMKVMADGK--GTSFMEDYTYHFEPGNELILGAHMLEVCPTIAA 359

Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420
             +P ++V  L IGGK+DPARL+F+   G A+ ASLIDLG R+RL+VN +D VK  H +P
Sbjct: 360 -TRPRVEVHPLSIGGKEDPARLVFDGGEGAAVNASLIDLGHRFRLIVNEVDAVKPEHDMP 418

Query: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480
           KLPVA  LWK +P L  ++EAWILAGGAHHT FS A+    ++ FAEM  IE  VI+  T
Sbjct: 419 KLPVARILWKPRPSLRDSAEAWILAGGAHHTCFSFAVTTEQLQDFAEMAGIECVVINEHT 478

Query: 481 RLPAFKDALRWNEVYYGFR 499
            + +FK+ L+WNEV++  R
Sbjct: 479 SVSSFKNELKWNEVFWRGR 497


>4LQL-A nrPDB
          Length = 474

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/477 (44%), Positives = 300/477 (62%), Gaps = 5/477 (1%)

Query: 1   MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60
           M    +Y+ WFV+GSQ LYGPE L +V + A  +V+ LN   KL   +  K + TT D I
Sbjct: 1   MRKMQDYKFWFVVGSQPLYGPEALAEVEKDARKLVDGLNKGGKLDYPVEFKLVATTADSI 60

Query: 61  TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120
           T   ++ANY+D  AG++ W+HTFSPAK WI G  +L KPLL   TQF   +P+DSIDMD+
Sbjct: 61  TKFMKEANYNDDVAGVITWMHTFSPAKNWIRGTELLQKPLLHLATQFLNNIPFDSIDMDY 120

Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180
           MNL+Q+AHG RE+ +I +R+    A V G W D    E+I  W   AV+  ++ H+K+ R
Sbjct: 121 MNLHQSAHGDREYAYINSRLNVPAASVYGWWGDADVQEQIADWQHVAVAYNESFHIKIAR 180

Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240
           FGD MR+VAVT+GDKVAAQIK G++V+ +   +LV VVN I++ +++A   + E+ Y + 
Sbjct: 181 FGDTMRDVAVTEGDKVAAQIKLGWTVDYYPTNELVAVVNGIAEDEIDAAYKDLEANYDLV 240

Query: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300
                H K   NV    R  LG+K+FL+  G+ AFT  F+DL GL+QLPGLAVQ LM  G
Sbjct: 241 EGDNDHEKYVHNVRYQLREYLGIKKFLDDNGYDAFTDNFQDLEGLEQLPGLAVQLLMIDG 300

Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360
           YGF  EGD+K A L R++K+ +   Q  T+ MEDYT     G++ ++GSHMLEV P++A+
Sbjct: 301 YGFGPEGDFKMAGLTRLLKIAADNKQ--TALMEDYTLDLRHGHEAIMGSHMLEVDPTLAS 358

Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHS-L 419
            +KP ++V  LGIGGKDDPARL+F    G     +L    D Y+ +   +D  KTP + +
Sbjct: 359 -DKPRVEVHPLGIGGKDDPARLVFTGAEGKGYDITLSYFDDGYKFIGYPVD-CKTPEAEM 416

Query: 420 PKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVI 476
           PKLPVA  +W  +  L   ++ W+  GG HHTV + AL+   + Q A +  ++   I
Sbjct: 417 PKLPVAKQMWTPEIGLAEGAKQWMKYGGGHHTVLTLALSEEQLEQLARLFKVDFINI 473


>3VIK-A nrPDB
          Length = 487

 Score = 31.1 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 141 RQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVC--RFGDNMR-----EVAVTDG 193
             +  V   HW   QA + +G W    ++K    + +V    FGD ++        +T  
Sbjct: 120 GIEPMVTMYHWDLPQALQDLGGWPNLVLAKYSENYARVLFKNFGDRVKLWLTFNSPLTFM 179

Query: 194 DKVAAQIKFGFSVNTWAVGDLVQ 216
           D  A++I    S+NT  +GD + 
Sbjct: 180 DGYASEIGMAPSINTPGIGDYLA 202


>6MZD-C nrPDB
          Length = 929

 Score = 29.6 bits (65), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 393 VASLIDLGDRYRLLV----------NCIDTVKTPHSLPKLPVA--NALWKAQPDLPTASE 440
              L D+G+ ++L+           + I+ V  PH +P  PV+  N L   QP    A E
Sbjct: 60  DPILDDVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEE 119


>3QQ2-A nrPDB
          Length = 284

 Score = 29.2 bits (64), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 126 TAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVC-RFGDN 184
           +  GGR F        +  A V   W+      R  + +R  V        ++  RFG  
Sbjct: 141 SLEGGRRFELPNDWFAEPQAEVM-LWRTSGKRYRASNGLRVKVDANTATLGRLGLRFG-- 197

Query: 185 MREVAVTDGDKVAAQIKFGFSVNTWAVGDL 214
            R +A+  G+ V    + G++    + GD+
Sbjct: 198 -RRIALAGGNIVQPYARLGWTQEFKSTGDV 226


>3TTS-A nrPDB
          Length = 675

 Score = 29.2 bits (64), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 381 RLIFNTQTGPAIVASLIDLGDRYRLLVN----CIDTVKTPHSLPKLPV--ANALWKAQPD 434
           R      +GP+I  + ++   +Y   +       D +     L K  V  A  ++  +P 
Sbjct: 408 RWALELSSGPSIALNYVNEVHKYYDALYKQNIQTDMISVEEDLSKYKVVIAPVMYMVKPG 467

Query: 435 LPTASEAWILAGGAH-HTVFSHALNLNDMRQF----AEMHDIEITVIDN-DTRLPAFKDA 488
                E ++  GG    T FS  +N ND+        E+ ++     +  D  LP  ++ 
Sbjct: 468 FAERVERFVAQGGTFVTTFFSGIVNENDLVTLGGYPGELRNVMGIWAEEIDALLPGHQNE 527

Query: 489 LRWNEVYYGFR 499
           +   + + G R
Sbjct: 528 IVLRQDWGGLR 538


>2N5T-A nrPDB
          Length = 575

 Score = 29.2 bits (64), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 242 ATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGY 301
           A +I   +R+ + +  R  L    F +         + E++  L++   +  Q L  +G 
Sbjct: 359 AIRIAMDRREILRDQLRAILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQELRDEGK 418

Query: 302 GFAGEGDW-------KTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLE- 353
            F    +          A + R +         GT+ +  YT   ++GND++  SH+ + 
Sbjct: 419 AFDESIEIGVMVETPAAATIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMI--SHLYQP 476

Query: 354 VCPSIAAEEKPILDVQH 370
           + PS+    K ++D  H
Sbjct: 477 MSPSVLNLIKQVIDASH 493


>1E3D-B nrPDB
          Length = 542

 Score = 28.4 bits (62), Expect = 8.2,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 324 GLQGGTSFMEDYTYHFEKGN--DLVLGSHMLEVCPS----IAAEEKPILDVQHLGIGGKD 377
            L  G  FM D+  HF   +  D V  +  L   P+    +A    P           + 
Sbjct: 103 NLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQA 162

Query: 378 DPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKL----PVANALWKAQP 433
                + + Q GP   A  +   + Y  +    + V T H L  L     VA  +  A  
Sbjct: 163 KLKTFVASGQLGPFTNAYFLGGHEGY-YMDPEANLVCTAHYLQALRAQVEVAKGM--AVF 219

Query: 434 DLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMH 469
                   + +AGG   T +  AL    ++QF E++
Sbjct: 220 GAKNPHTQFTVAGGV--TCYE-ALTPERIKQFRELY 252


>2CZ2-A nrPDB
          Length = 223

 Score = 28.1 bits (61), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 10/54 (18%)

Query: 249 KRQNVLEAARIELGMK---------RFLEQGGFHAFTTTFEDLHGLKQLPGLAV 293
            R +     RI L +K           ++ GG   FT  F+ L+ +KQ+P L +
Sbjct: 19  FRSSCSWRVRIALALKGIDYEIVPINLIKDGG-QQFTEEFQTLNPMKQVPALKI 71


>5VVM-A nrPDB
          Length = 346

 Score = 28.1 bits (61), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 364 PILDVQHLGIGGKDDPARLIFNTQTGPAIVAS 395
           P L+   +GI  KDD  RL+ N +   A+  +
Sbjct: 38  PKLEYHIVGIVAKDDTDRLVPNQEDAFAVNIN 69


>3EC2-A nrPDB
          Length = 180

 Score = 28.1 bits (61), Expect = 9.5,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 78  VWLHTFSPAKMWINGLTMLNKPLL---QFHTQFNAALP---------WDSIDMDFMNLNQ 125
           V++H F+P +    GLT +  P +           A+          +D+ D+ F  L  
Sbjct: 28  VFVHNFNPEEG--KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF-RLKH 84

Query: 126 TAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSK 170
               G++  F+   +     V+     D    ER+  W R+ +S 
Sbjct: 85  LMDEGKDTKFLKTVLNSPVLVL-----DDLGSERLSDWQRELISY 124


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.316    0.138    0.403 

Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,470,754
Number of Sequences: 36641
Number of extensions: 911021
Number of successful extensions: 2129
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2109
Number of HSP's gapped (non-prelim): 29
length of query: 500
length of database: 10,336,785
effective HSP length: 101
effective length of query: 399
effective length of database: 6,636,044
effective search space: 2647781556
effective search space used: 2647781556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 61 (28.1 bits)