BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P07884 (428 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3EPJ-A nrPDB 854 0.0 3D3Q-A nrPDB 188 3e-48 3EXA-A nrPDB 178 3e-45 2ZXU-A nrPDB 121 6e-28 3A8T-A nrPDB 115 3e-26 3CRQ-A nrPDB 109 3e-24 6EMW-B nrPDB 32 0.47 3GS2-A nrPDB 32 0.47 6EM8-A nrPDB 31 0.83 1KAG-A nrPDB 31 0.89 1KNQ-A nrPDB 31 1.2 3IIK-A nrPDB 30 1.9 6QI8-A nrPDB 29 3.2 2GAO-A nrPDB 29 3.3 2XSZ-A nrPDB 29 3.3 5D1F-A nrPDB 29 3.6 1R6B-X nrPDB 29 3.8 2JAQ-A nrPDB 29 4.2 3EMC-A nrPDB 29 4.6 5HJ5-A nrPDB 28 5.3 5DI3-B nrPDB 28 6.3 4M9Q-A nrPDB 28 6.5 1JB1-A nrPDB 28 6.5 4CVN-A nrPDB 28 6.5 3TAV-A nrPDB 28 7.9 >3EPJ-A nrPDB Length = 409 Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/409 (100%), Positives = 409/409 (100%) Query: 13 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH 72 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH Sbjct: 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH 60 Query: 73 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK 132 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK Sbjct: 61 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK 120 Query: 133 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE 192 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE Sbjct: 121 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE 180 Query: 193 QKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCEN 252 QKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCEN Sbjct: 181 QKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCEN 240 Query: 253 GVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDI 312 GVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDI Sbjct: 241 GVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDI 300 Query: 313 YLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTH 372 YLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTH Sbjct: 301 YLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTH 360 Query: 373 YTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADFEKWKI 421 YTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADFEKWKI Sbjct: 361 YTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADFEKWKI 409 >3D3Q-A nrPDB Length = 340 Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 109/290 (37%), Positives = 169/290 (58%), Gaps = 17/290 (5%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMN 75 +IVI G T GK++LSI++A+KFNGE+I+ DSMQVY+ + I T K +E EGIPH++++ Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68 Query: 76 HVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQT-LFNKRVDTKS-SERKL 133 + + ++ F+ I+DI RRGK+PI+ GGT Y+Q+ L+N + +S SE K+ Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKM 128 Query: 134 TRKQLDI--LESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFN 191 + +L + LE + + ++ L D + A HPN+ +RV R +E Y KT K S Sbjct: 129 KQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKK 188 Query: 192 EQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCE 251 Q+ T +DTL + + E L+ R++ RVD ML G E++ L E F Q Sbjct: 189 VQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVE----QGFEASQS- 243 Query: 252 NGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIK 301 Q IG+KE +P + G + +E+ +E++K +RQYAKRQ+ W K Sbjct: 244 ---MQAIGYKELVPVIKG-----NISMENAVEKLKQHSRQYAKRQLTWFK 285 >3EXA-A nrPDB Length = 322 Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 108/313 (34%), Positives = 177/313 (56%), Gaps = 25/313 (7%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPH 71 M +K++ I G T VGK++ S+ LA++ NGEVI+ DSMQVY+ + I T K +E +G+PH Sbjct: 1 MKEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPH 60 Query: 72 HVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNK--RVDTKSS 129 H+++ D SE + F+ I +IH RG++P +VGGT Y+ + ++ D ++ Sbjct: 61 HLIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRAD 120 Query: 130 ERKLTRKQLD-ILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSE 188 E R +L+ + S +++ L K DP A HPN+YRRV R LEI TGK +E Sbjct: 121 ED--YRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTE 178 Query: 189 -TFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTP 247 +E++ ++ + + L + + L+ R++ RVD M+E G + E K+LY+ ++ Sbjct: 179 QARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRGIRD---- 234 Query: 248 EQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPD 307 C++ Q IG+KE +L D V LE+ I+ +K +R+YAKRQ+ W + Sbjct: 235 --CQS--VQAIGYKEMYDYL-----DGNVTLEEAIDTLKRNSRRYAKRQLTWFRN----- 280 Query: 308 IKGDIYLLDATDL 320 K ++ D TD+ Sbjct: 281 -KANVTWFDMTDV 292 >2ZXU-A nrPDB Length = 316 Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 14/289 (4%) Query: 15 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVM 74 K I + G T GK+ L+I+L + E+I+ DS +YK + I T K +E PH ++ Sbjct: 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL 70 Query: 75 NHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLT 134 + D S+ Y + F + + + DI G+IP++VGGT Y + L S++ ++ Sbjct: 71 DIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVR 130 Query: 135 RKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQK 194 + + ++ L + DP A + HPND +R+ R LE+++ +GK +E Sbjct: 131 ARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSG 190 Query: 195 ITLKFDT-LFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPE-QCEN 252 L + F + E L QR++ R ML G E++ L+ + P +C Sbjct: 191 DALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRC-- 248 Query: 253 GVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIK 301 +G+++ +L G+ + ++ + R TRQ AKRQ+ W++ Sbjct: 249 -----VGYRQMWSYLEGE-----ISYDEMVYRGVCATRQLAKRQITWLR 287 >3A8T-A nrPDB Length = 339 Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/322 (27%), Positives = 135/322 (41%), Gaps = 74/322 (22%) Query: 14 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 73 +K++V+ G TG GKS+LSI LA F EVINSD MQVYK + I TNK + +R G+PHH+ Sbjct: 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHL 99 Query: 74 MNHVDWSE-EYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK 132 + VD + E F + A+ +I R K+P++VGG++ ++ L R D+ Sbjct: 100 LGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGP--- 156 Query: 133 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE 192 + E V+ + L Sbjct: 157 ------GVFEEGSHSVVSSEL--------------------------------------- 171 Query: 193 QKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCEN 252 ++D FLW+ + L L RVDDMLE G E+ + Y ++ Sbjct: 172 -----RYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRT 226 Query: 253 GVWQVIGFKEFLPWL------------TGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWI 300 G+ + IG EF + G+ E+ + +K T AKRQ+ I Sbjct: 227 GLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKI 286 Query: 301 KKMLIPDIKG---DIYLLDATD 319 ++ KG D+ LDAT+ Sbjct: 287 LRL-----KGAGWDLRRLDATE 303 >3CRQ-A nrPDB Length = 323 Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 23/299 (7%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMN 75 I + G T GK+ L++ LA E+I+ DS +Y+ + I T K + PH +++ Sbjct: 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66 Query: 76 HVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTR 135 D +E Y + F + + A+ RG+IP++VGGT Y + L D ++ ++ Sbjct: 67 IRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRA 126 Query: 136 KQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKI 195 ++ + ++ L + DP+ A + HPND +R+ R LE+Y G S+ Q Sbjct: 127 AIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSA 186 Query: 196 T-LKFDT--------LFLWLYSKPEP---LFQRLDDRVDDMLERGALQEIKQLYEYYSQN 243 FD L PE L R+ R MLE+G + E++ L+ + Sbjct: 187 EKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSDLH 246 Query: 244 KFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKK 302 P + +G+++ +L GK + + ER TRQ AKRQ W++ Sbjct: 247 AGLPS------IRAVGYRQVWDYLDGK-----LSYAEMTERGIIATRQLAKRQFTWLRS 294 >6EMW-B nrPDB Length = 225 Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH 76 + G TGVGK++L+ LA+ G+ D + D+ KH + G P + H Sbjct: 54 FIFLGPTGVGKTELARALAESMFGD----DDAMIRVDMSEFMEKHAVSRLVGAPPGYVGH 109 Query: 77 VDWSE 81 D + Sbjct: 110 DDGGQ 114 >3GS2-A nrPDB Length = 111 Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 11/88 (12%) Query: 320 LSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWT--HYTCNV 377 L + D +A R I S + + K ALEEL SKGE+ LD + YT + Sbjct: 14 LMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYI 73 Query: 378 CRNADGKNVV--------AIGEKYWKIH 397 A G+ V + EKYWK++ Sbjct: 74 A-TASGQFTVLDGSFSLELVSEKYWKVN 100 >6EM8-A nrPDB Length = 818 Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHV 77 + G TGVGK++L+ LA+ G+ D + D+ KH + G P + H Sbjct: 542 IFLGPTGVGKTELARALAESMFGD----DDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHD 597 Query: 78 DWSE 81 D + Sbjct: 598 DGGQ 601 >1KAG-A nrPDB Length = 173 Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 14 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 46 K+ I + G G GKS + QLAQ+ N E +SD Sbjct: 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 >1KNQ-A nrPDB Length = 175 Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 11 NMSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 N + V+ G +G GKS ++ ++A + + ++ D + ++I + + PL + + P Sbjct: 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 64 >3IIK-A nrPDB Length = 180 Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 23/45 (51%) Query: 4 GPLKGCLNMSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 48 GPL M I++ GT GVGK+ L +LA K + IN + Sbjct: 1 GPLGSPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL 45 >6QI8-A nrPDB Length = 456 Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust. Identities = 10/31 (32%), Positives = 21/31 (67%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFNGEV 42 M+ + +++AG G GK+ L++ +AQ+ +V Sbjct: 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKV 91 >2GAO-A nrPDB Length = 208 Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 18/102 (17%) Query: 296 QVKWIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFISNRPI-----KQERAP 350 Q + + K +P I G ++L+D D S+ + + ++++ ISN PI K +R Sbjct: 91 QARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTD 150 Query: 351 KALEELL-----------SKGETTMKKLDD--WTHYTCNVCR 379 EE L KG T+K+L+ + C+V + Sbjct: 151 AISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLK 192 >2XSZ-A nrPDB Length = 367 Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust. Identities = 10/31 (32%), Positives = 21/31 (67%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFNGEV 42 M+ + +++AG G GK+ L++ +AQ+ +V Sbjct: 75 MAGRAVLLAGPPGTGKTALALAIAQELGSKV 105 >5D1F-A nrPDB Length = 413 Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 19/27 (70%) Query: 11 NMSKKVIVIAGTTGVGKSQLSIQLAQK 37 N+ + IV+AG + GK+ LSI LAQK Sbjct: 270 NLYRADIVLAGVSRTGKTPLSIYLAQK 296 >1R6B-X nrPDB Length = 758 Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 21/29 (72%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSD 46 + AG TGVGK+++++QL++ E++ D Sbjct: 492 LFAGPTGVGKTEVTVQLSKALGIELLRFD 520 >2JAQ-A nrPDB Length = 205 Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVI------NSDSMQVYKDI 54 I I GT G GKS +S ++++K E+ N Q YKD+ Sbjct: 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDL 46 >3EMC-A nrPDB Length = 331 Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 9/66 (13%) Query: 295 RQVKWIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALE 354 R KW++ + G+ YL+ A +++ A A+ ND+ P+K+E+ + Sbjct: 144 RDTKWLRLL------GEDYLVQAFNMAH---EADPNALLFYNDYNETDPVKREKIYNLVR 194 Query: 355 ELLSKG 360 LL +G Sbjct: 195 SLLDQG 200 >5HJ5-A nrPDB Length = 267 Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 61 HPLQEREGIPHHVMNHVDWSEEYY------SHRFETECMNAIEDIHRRGKIPIVVGGTHY 114 HP R + ++ NH+D EE + E EC + I GKI + +GG Sbjct: 81 HPESYRSFMYNNFFNHIDIQEENINLLNGNTDDHEAECKRYEDKIKSYGKINLFMGGVGN 140 Query: 115 YLQTLFNKRVDTKSSERKL 133 FN+ + SS ++ Sbjct: 141 DGHIAFNEPASSLSSRTRI 159 >5DI3-B nrPDB Length = 263 Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust. Identities = 10/50 (20%), Positives = 28/50 (56%) Query: 295 RQVKWIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFISNRPI 344 + ++ + K + ++ +Y++DA D +++ + A + N F+ ++PI Sbjct: 59 KNIRGVWKKYLAEVHAIVYVVDAADPGRFEESKMTMAEVLENQFMRDKPI 108 >4M9Q-A nrPDB Length = 227 Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust. Identities = 10/50 (20%), Positives = 28/50 (56%) Query: 295 RQVKWIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFISNRPI 344 + ++ + K + ++ +Y++DA D +++ + A + N F+ ++PI Sbjct: 59 KNIRGVWKKYLAEVHAIVYVVDAADPGRFEESKMTMAEVLENQFMRDKPI 108 >1JB1-A nrPDB Length = 205 Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYK 52 ++I G +GVGKS+ +++L Q+ + +I D + VY+ Sbjct: 37 VLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQ 71 >4CVN-A nrPDB Length = 191 Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNGEVIN 44 +I I GT GVGK+ ++ LA+K E +N Sbjct: 13 LIAITGTPGVGKTTIAKLLAEKLGYEYVN 41 >3TAV-A nrPDB Length = 286 Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 352 ALEELLSKGETTMKKL-DDWTHYTCNVCRNADGKNVVAIGEKYWKI 396 A+E +L+ G T + L DDWT T + R A ++ VA+ E +I Sbjct: 236 AIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRI 281 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3EPJ-A nrPDB 671 0.0 3EXA-A nrPDB 384 e-107 2ZXU-A nrPDB 378 e-105 3D3Q-A nrPDB 355 2e-98 3CRQ-A nrPDB 342 1e-94 3A8T-A nrPDB 309 2e-84 Sequences not found previously or not previously below threshold: 2CHV-A nrPDB 40 0.002 2ZE6-A nrPDB 39 0.003 1KAG-A nrPDB 37 0.013 1UM8-A nrPDB 37 0.014 6EMW-B nrPDB 37 0.020 6EM8-A nrPDB 36 0.028 1SXJ-D nrPDB 36 0.045 2PZ8-A nrPDB 35 0.054 1R6B-X nrPDB 35 0.054 3W34-A nrPDB 35 0.061 1OFI-A nrPDB 35 0.083 6E11-1 nrPDB 34 0.093 3IIK-A nrPDB 34 0.12 1IM2-A nrPDB 34 0.17 3GS2-A nrPDB 34 0.18 5OFO-C nrPDB 33 0.23 4CIU-A nrPDB 33 0.24 2PJZ-A nrPDB 33 0.25 1SXJ-C nrPDB 33 0.26 6QI8-A nrPDB 33 0.26 2XSZ-A nrPDB 33 0.26 6ED3-A nrPDB 33 0.30 5JP0-A nrPDB 33 0.31 5IKK-A nrPDB 32 0.32 4I5O-A nrPDB 32 0.35 1E94-E nrPDB 32 0.38 1NSY-A nrPDB 32 0.41 2CHG-A nrPDB 32 0.42 4XZE-A nrPDB 32 0.48 3J3U-A nrPDB 32 0.50 3H3A-A nrPDB 32 0.55 4D81-A nrPDB 32 0.57 3B0H-A nrPDB 32 0.67 1KNQ-A nrPDB 32 0.68 4LJ8-A nrPDB 32 0.70 1M6E-X nrPDB 31 0.74 3EMC-A nrPDB 31 0.86 2VP0-A nrPDB 31 0.86 2D3W-A nrPDB 31 0.86 1Z6G-A nrPDB 31 1.2 1Q0U-A nrPDB 31 1.3 1QVR-A nrPDB 31 1.4 6EF2-J nrPDB 31 1.4 3JCO-J nrPDB 31 1.4 1S4Q-A nrPDB 31 1.5 2QSZ-A nrPDB 31 1.5 5JZV-A nrPDB 30 1.7 4FIQ-A nrPDB 30 2.0 2SHK-A nrPDB 30 2.2 3PXI-A nrPDB 30 2.3 4Y0A-A nrPDB 30 2.3 2IPX-A nrPDB 30 2.4 5WRU-A nrPDB 30 2.7 4XGU-A nrPDB 29 2.8 3LVG-A nrPDB 29 2.8 6EPA-A nrPDB 29 2.9 5X7K-A nrPDB 29 2.9 2GZA-A nrPDB 29 2.9 2BDT-A nrPDB 29 2.9 5VQ9-D nrPDB 29 3.3 3K1J-A nrPDB 29 3.6 6D00-1 nrPDB 29 3.7 4KBG-A nrPDB 29 4.2 4LCB-A nrPDB 29 4.8 4FWI-B nrPDB 29 5.1 2YR0-A nrPDB 29 5.9 5A9Q-8 nrPDB 28 6.7 5ZFQ-A nrPDB 28 7.1 5FL3-A nrPDB 28 7.3 4EUN-A nrPDB 28 7.4 2H92-A nrPDB 28 8.0 CONVERGED! >3EPJ-A nrPDB Length = 409 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 409/409 (100%), Positives = 409/409 (100%) Query: 13 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH 72 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH Sbjct: 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH 60 Query: 73 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK 132 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK Sbjct: 61 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK 120 Query: 133 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE 192 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE Sbjct: 121 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE 180 Query: 193 QKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCEN 252 QKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCEN Sbjct: 181 QKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCEN 240 Query: 253 GVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDI 312 GVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDI Sbjct: 241 GVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDI 300 Query: 313 YLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTH 372 YLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTH Sbjct: 301 YLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTH 360 Query: 373 YTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADFEKWKI 421 YTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADFEKWKI Sbjct: 361 YTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADFEKWKI 409 >3EXA-A nrPDB Length = 322 Score = 384 bits (986), Expect = e-107, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 174/312 (55%), Gaps = 23/312 (7%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPH 71 M +K++ I G T VGK++ S+ LA++ NGEVI+ DSMQVY+ + I T K +E +G+PH Sbjct: 1 MKEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPH 60 Query: 72 HVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNK--RVDTKSS 129 H+++ D SE + F+ I +IH RG++P +VGGT Y+ + ++ D ++ Sbjct: 61 HLIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRAD 120 Query: 130 ERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSE- 188 E + + S +++ L K DP A HPN+YRRV R LEI TGK +E Sbjct: 121 ED-YRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQ 179 Query: 189 TFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPE 248 +E++ ++ + + L + + L+ R++ RVD M+E G + E K+LY+ ++ Sbjct: 180 ARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRGIRD----- 234 Query: 249 QCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDI 308 C++ Q IG+KE +L G V LE+ I+ +K +R+YAKRQ+ W + Sbjct: 235 -CQS--VQAIGYKEMYDYLDG-----NVTLEEAIDTLKRNSRRYAKRQLTWFRN------ 280 Query: 309 KGDIYLLDATDL 320 K ++ D TD+ Sbjct: 281 KANVTWFDMTDV 292 >2ZXU-A nrPDB Length = 316 Score = 378 bits (970), Expect = e-105, Method: Composition-based stats. Identities = 80/309 (25%), Positives = 144/309 (46%), Gaps = 18/309 (5%) Query: 15 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVM 74 K I + G T GK+ L+I+L + E+I+ DS +YK + I T K +E PH ++ Sbjct: 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL 70 Query: 75 NHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLT 134 + D S+ Y + F + + + DI G+IP++VGGT Y + L S++ ++ Sbjct: 71 DIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVR 130 Query: 135 RKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQK 194 + + ++ L + DP A + HPND +R+ R LE+++ +GK +E Sbjct: 131 ARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSG 190 Query: 195 ITLKFDT-LFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENG 253 L + F + E L QR++ R ML G E++ L+ + P Sbjct: 191 DALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPS----- 245 Query: 254 VWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIY 313 + +G+++ +L G+ + ++ + R TRQ AKRQ+ W++ ++ Sbjct: 246 -IRCVGYRQMWSYLEGE-----ISYDEMVYRGVCATRQLAKRQITWLRGWEG------VH 293 Query: 314 LLDATDLSQ 322 LD+ Q Sbjct: 294 WLDSEKPEQ 302 >3D3Q-A nrPDB Length = 340 Score = 355 bits (911), Expect = 2e-98, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 177/310 (57%), Gaps = 23/310 (7%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMN 75 +IVI G T GK++LSI++A+KFNGE+I+ DSMQVY+ + I T K +E EGIPH++++ Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68 Query: 76 HVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQT-LFNKRVDTKS-SERKL 133 + + ++ F+ I+DI RRGK+PI+ GGT Y+Q+ L+N + +S SE K+ Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKM 128 Query: 134 TRKQLDI--LESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFN 191 + +L + LE + + ++ L D + A HPN+ +RV R +E Y KT K S Sbjct: 129 KQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKK 188 Query: 192 EQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCE 251 Q+ T +DTL + + E L+ R++ RVD ML G E++ L E F Q Sbjct: 189 VQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVE----QGFEASQS- 243 Query: 252 NGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGD 311 Q IG+KE +P + G + +E+ +E++K +RQYAKRQ+ W K K + Sbjct: 244 ---MQAIGYKELVPVIKG-----NISMENAVEKLKQHSRQYAKRQLTWFKN------KMN 289 Query: 312 IYLLDATDLS 321 ++ L+ +S Sbjct: 290 VHWLNKERMS 299 >3CRQ-A nrPDB Length = 323 Score = 342 bits (878), Expect = 1e-94, Method: Composition-based stats. Identities = 77/314 (24%), Positives = 138/314 (43%), Gaps = 29/314 (9%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMN 75 I + G T GK+ L++ LA E+I+ DS +Y+ + I T K + PH +++ Sbjct: 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66 Query: 76 HVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTR 135 D +E Y + F + + A+ RG+IP++VGGT Y + L D ++ ++ Sbjct: 67 IRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRA 126 Query: 136 KQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKI 195 ++ + ++ L + DP+ A + HPND +R+ R LE+Y G S+ Q Sbjct: 127 AIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSA 186 Query: 196 T-LKFD-----------TLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQN 243 FD + + L R+ R MLE+G + E++ L+ + Sbjct: 187 EKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSDLH 246 Query: 244 KFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKM 303 P + +G+++ +L GK + + ER TRQ AKRQ W++ Sbjct: 247 AGLPS------IRAVGYRQVWDYLDGK-----LSYAEMTERGIIATRQLAKRQFTWLRSW 295 Query: 304 LIPDIKGDIYLLDA 317 ++ +D+ Sbjct: 296 ------SHLHWMDS 303 >3A8T-A nrPDB Length = 339 Score = 309 bits (790), Expect = 2e-84, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 133/320 (41%), Gaps = 68/320 (21%) Query: 13 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH 72 +K++V+ G TG GKS+LSI LA F EVINSD MQVYK + I TNK + +R G+PHH Sbjct: 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHH 98 Query: 73 VMNHVDWSE-EYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSER 131 ++ VD + E F + A+ +I R K+P++VGG++ ++ L R D+ Sbjct: 99 LLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGP-- 156 Query: 132 KLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFN 191 + E V+ + L Sbjct: 157 -------GVFEEGSHSVVSSEL-------------------------------------- 171 Query: 192 EQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCE 251 ++D FLW+ + L L RVDDMLE G E+ + Y ++ Sbjct: 172 ------RYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATR 225 Query: 252 NGVWQVIGFKEFLPWL------------TGKTDDNTVKLEDCIERMKTRTRQYAKRQVKW 299 G+ + IG EF + G+ E+ + +K T AKRQ+ Sbjct: 226 TGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGK 285 Query: 300 IKKMLIPDIKGDIYLLDATD 319 I ++ D+ LDAT+ Sbjct: 286 ILRLKGAGW--DLRRLDATE 303 >2CHV-A nrPDB Length = 319 Score = 39.8 bits (91), Expect = 0.002, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 42/246 (17%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV----YKDIPIITNKHP----LQEREG 68 ++ +G G GK+ +I LA+ GE + +++ + I ++ +K G Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG 100 Query: 69 IPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVD--- 125 P ++ +D ++ + +E + + + + Y+ + Sbjct: 101 APFKII-FLDEADALT-ADAQAALRRTMEMYSKSCRFIL----SCNYVSRIIEPIQSRCA 154 Query: 126 ----TKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYK 181 + + ++ L+I E + + L + D+R+ L+ Sbjct: 155 VFRFKPVPKEAMKKRLLEICEKEGVKITEDGL-----EALIYISGGDFRKAINALQGAAA 209 Query: 182 TGK--------KPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQE- 232 G+ + + T +++T T + + L RL M+E G E Sbjct: 210 IGEVVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRL------MVEYGMSGED 263 Query: 233 -IKQLY 237 + QL+ Sbjct: 264 IVAQLF 269 >2ZE6-A nrPDB Length = 253 Score = 39.4 bits (90), Expect = 0.003, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHV 77 +I G T GK+ ++IQ+AQ+ V+ D +Q I + + E + ++ Sbjct: 5 LIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSR 64 Query: 78 DWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQ 137 +E + D + + I+ GG+ L + + + R + Sbjct: 65 PLTEGILDAESAHRRLIFEVDWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLR 124 Query: 138 LD 139 L Sbjct: 125 LG 126 >1KAG-A nrPDB Length = 173 Score = 37.5 bits (85), Expect = 0.013, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 21/100 (21%) Query: 13 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYK-DIPIITNKHPLQEREGIPH 71 K+ I + G G GKS + QLAQ+ N E +SD + + + + EG Sbjct: 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGW----VFDLEG--- 55 Query: 72 HVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGG 111 F I ++ + I + GG Sbjct: 56 -------------EEGFRDREEKVINELTEKQGIVLATGG 82 >1UM8-A nrPDB Length = 376 Score = 37.1 bits (84), Expect = 0.014, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 13 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH 72 SK I++ G TG GK+ ++ LA+ + + SD+ + + + ++ E I Sbjct: 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVG------EDVENILTR 124 Query: 73 VMNHVDWS 80 ++ DW+ Sbjct: 125 LLQASDWN 132 >6EMW-B nrPDB Length = 225 Score = 36.7 bits (83), Expect = 0.020, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHV 77 + G TGVGK++L+ LA+ G+ D + D+ KH + G P + H Sbjct: 55 IFLGPTGVGKTELARALAESMFGD----DDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHD 110 Query: 78 D 78 D Sbjct: 111 D 111 >6EM8-A nrPDB Length = 818 Score = 36.3 bits (82), Expect = 0.028, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHV 77 + G TGVGK++L+ LA+ G+ D + D+ KH + G P + H Sbjct: 542 IFLGPTGVGKTELARALAESMFGD----DDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHD 597 Query: 78 D 78 D Sbjct: 598 D 598 >1SXJ-D nrPDB Length = 353 Score = 35.6 bits (80), Expect = 0.045, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 52/276 (18%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNG---------EVINSDSMQVYKDIPI----------- 56 ++ G G GK+ + L ++ G E+ SD + I I Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE----RGISIVREKVKNFARL 116 Query: 57 ITNKHPLQEREGI--PHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHY 114 +K + E P + + +D ++ ++ +E + ++ Sbjct: 117 TVSKPSKHDLENYPCPPYKIIILDEADSMT-ADAQSALRRTMETYSGVTRFCLICNYVTR 175 Query: 115 YLQTLFNK-------RVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPN 167 + L ++ +D ++ +L D V+ L Sbjct: 176 IIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL---------DISAG 226 Query: 168 DYRRVQRMLEI------YYKTGKKPSETFNEQKI-TLKFDTLFLWLYSKPEPLFQRLDDR 220 D RR +L+ Y GK + T E+ + D L + F + Sbjct: 227 DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKY 286 Query: 221 VDDMLERGALQE--IKQLYEYYSQNKFTPEQCENGV 254 V+ ++ G + QL+EYY N +N + Sbjct: 287 VNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 322 >2PZ8-A nrPDB Length = 284 Score = 35.2 bits (79), Expect = 0.054, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 20/217 (9%) Query: 97 EDIHRRGKIPIVV-------GGTHYYLQTLFNKRVDTKSSERKLTRKQLDILES------ 143 +D G++ + GG ++ +V + +L + + +S Sbjct: 50 QDSTLAGRLAQLAVEEIRNEGGNATFIAVRLPYKVQKDEDDAQLALQFIQADQSVAFDIA 109 Query: 144 TDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKK---PSETFNEQKITLKFD 200 + D N + T ++ + + RM+ Y G+K T + + F Sbjct: 110 STVDAFSNQYENLLDESLTDFNKGNVKARIRMVTQYAIGGQKGLLVIGTDHAAEAVTGFF 169 Query: 201 TLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGF 260 T F + PL + +L+ E L + + I + Sbjct: 170 TKFGDGGADLLPLTGLTKRQGRALLQELGADERLYLKMPTADLLDEKPGQADETELGITY 229 Query: 261 KEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQV 297 + +L GKT V + IE+ T + KRQV Sbjct: 230 DQLDDYLEGKTVPADVA--EKIEKRYTVSEH--KRQV 262 >1R6B-X nrPDB Length = 758 Score = 35.2 bits (79), Expect = 0.054, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 + AG TGVGK+++++QL++ E++ D M Y +H + G P Sbjct: 492 LFAGPTGVGKTEVTVQLSKALGIELLRFD-MSEY------MERHTVSRLIGAP 537 >3W34-A nrPDB Length = 211 Score = 35.2 bits (79), Expect = 0.061, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 62/176 (35%), Gaps = 27/176 (15%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM-QVYKDIPIITNKHPLQEREGIPHHVM 74 VI IAG T GK+ L+ LA+ GE + M YKD+ PL+ER + + Sbjct: 8 VIGIAGGTASGKTTLAQALARTL-GERVALLPMDHYYKDL----GHLPLEERLRVNYDHP 62 Query: 75 NHVDWS--------------EEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTL- 119 + D + E + F + R + I+ G Y + L Sbjct: 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELR 122 Query: 120 ----FNKRVDTKSSERKLTRKQLDILESTDP--DVIYNTLVKCDPDIATKYHPNDY 169 VD + ER + R + D+LE V+ L + P P Sbjct: 123 DLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKR 178 >1OFI-A nrPDB Length = 310 Score = 34.8 bits (78), Expect = 0.083, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 28/136 (20%) Query: 2 LKGPLKGCLNMSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQ------------ 49 L+ PL+ ++ K I++ G TGVGK++++ +LA+ N I ++ + Sbjct: 40 LQEPLRH--EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVD 97 Query: 50 -VYKDI-PIITNKHPLQEREGIPHHVMNHVD---WSEEYYSHRFETECMNAIEDIHRRGK 104 + +D+ E+ GI ++ +D EY E + +R Sbjct: 98 SIIRDLTDSAGGAIDAVEQNGIV--FIDEIDKICKKGEYSGADVSREGV-------QRDL 148 Query: 105 IPIVVGGTHYYLQTLF 120 +P+V G T + Sbjct: 149 LPLVEGSTVSTKHGMV 164 >6E11-1 nrPDB Length = 906 Score = 34.4 bits (77), Expect = 0.093, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHV 77 + G TGVGK+ +LA+ E+ NS + ++ T H + + G P + Sbjct: 635 LFLGPTGVGKT----ELAKTLAIELFNSKDNLIRVNMSEFTEAHSVSKITGSPPGYVGFS 690 Query: 78 DWSE 81 D + Sbjct: 691 DSGQ 694 >3IIK-A nrPDB Length = 180 Score = 34.0 bits (76), Expect = 0.12, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 26/190 (13%) Query: 4 GPLKGCLNMSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM----QVYKDIPIITN 59 GPL M I++ GT GVGK+ L +LA K + IN + Q+Y Sbjct: 1 GPLGSPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD---- 56 Query: 60 KHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIP--------IVVGG 111 +E + +D + I D H P ++ Sbjct: 57 ----EEYD------CPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTD 106 Query: 112 THYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRR 171 T+ + L + + K + + +L +V P + N+ + Sbjct: 107 TNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQ 166 Query: 172 VQRMLEIYYK 181 + + +E + K Sbjct: 167 ILKWIEQWIK 176 >1IM2-A nrPDB Length = 444 Score = 33.6 bits (75), Expect = 0.17, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 2 LKGPLKGCLNMSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 47 L+ PL+ ++ K I++ G TGVGK++++ +LA+ N I ++ Sbjct: 40 LQEPLRH--EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 >3GS2-A nrPDB Length = 111 Score = 33.6 bits (75), Expect = 0.18, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 11/88 (12%) Query: 320 LSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWT--HYTCNV 377 L + D +A R I S + + K ALEEL SKGE+ LD + YT + Sbjct: 14 LMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYI 73 Query: 378 CRNADGKNVVAIG--------EKYWKIH 397 A G+ V G EKYWK++ Sbjct: 74 A-TASGQFTVLDGSFSLELVSEKYWKVN 100 >5OFO-C nrPDB Length = 871 Score = 33.2 bits (74), Expect = 0.23, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 + G TGVGK++L LA + +SD V D+ KH + G P Sbjct: 606 LFLGPTGVGKTELCKALANF----MFDSDEAMVRIDMSEFMEKHSVSRLVGAP 654 >4CIU-A nrPDB Length = 727 Score = 33.2 bits (74), Expect = 0.24, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 + G TGVGK++L LA + +SD V D+ KH + G P Sbjct: 460 LFLGPTGVGKTELCKALANF----MFDSDEAMVRIDMSEFMEKHSVSRLVGAP 508 >2PJZ-A nrPDB Length = 263 Score = 33.2 bits (74), Expect = 0.25, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 16/186 (8%) Query: 10 LNMSKKVIVIAGTTGVGKSQLSIQLAQKFNGE-VINSDSMQVYKDIPIITNKHPLQEREG 68 L ++ + ++I G G GK+ L ++ I + M+V K I L E Sbjct: 26 LEVNGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYE 85 Query: 69 IPHHVMNHVDWSEEYYSHRFETE------CMNAIEDIHRRGKIPIVVGGTHYYLQTLFNK 122 I V + V EE + E+I RR + G Q++ + Sbjct: 86 IGVTVNDIVYLYEELKGLD-RDLFLEMLKALKLGEEILRRKLYKLSAG------QSVLVR 138 Query: 123 RVDTKSSERKLTRKQLDI--LESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYY 180 +S+ ++ +++ VI + + + H D + + + Y+ Sbjct: 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYF 198 Query: 181 KTGKKP 186 G + Sbjct: 199 LVGNRL 204 >1SXJ-C nrPDB Length = 340 Score = 32.9 bits (73), Expect = 0.26, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 22/198 (11%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNG--------EVINSDSMQVYKDIPIITNKH----PLQ 64 ++ G G GK+ + LA++ G E+ SD + I ++ N+ + Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD----RGIDVVRNQIKDFASTR 104 Query: 65 EREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV 124 + ++ +D ++ + + IE + + ++ H L ++ Sbjct: 105 QIFSKGFKLI-ILDEADAMTNAA-QNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 Query: 125 DTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGK 184 + + I + + L + D RRV +L+ T Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRVLNVLQSCKATLD 220 Query: 185 KPSETFNEQKITLKFDTL 202 P E +E + ++ Sbjct: 221 NPDE--DEISDDVIYECC 236 >6QI8-A nrPDB Length = 456 Score = 32.9 bits (73), Expect = 0.26, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 21/31 (67%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFNGEV 42 M+ + +++AG G GK+ L++ +AQ+ +V Sbjct: 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKV 91 >2XSZ-A nrPDB Length = 367 Score = 32.9 bits (73), Expect = 0.26, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 21/31 (67%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFNGEV 42 M+ + +++AG G GK+ L++ +AQ+ +V Sbjct: 75 MAGRAVLLAGPPGTGKTALALAIAQELGSKV 105 >6ED3-A nrPDB Length = 848 Score = 32.9 bits (73), Expect = 0.30, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 11 NMSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 N + G TGVGK++L+ LA + + V D+ KH + G P Sbjct: 597 NRPTGAFMFLGPTGVGKTELAKALADFL----FDDERAMVRIDMSEYGEKHTVARLIGAP 652 >5JP0-A nrPDB Length = 772 Score = 32.9 bits (73), Expect = 0.31, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 14/146 (9%) Query: 233 IKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQY 292 +K Y + + K F P+L L + + Sbjct: 212 MKHYMGYGVPVSGKDRTPSSISRSDMREKHFAPFLAA---VRQGALSVMVNSGVDNGLPF 268 Query: 293 -AKRQV--KWIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERA 349 A R++ +W+K+ L D D +L D A+ + A+ + N I Sbjct: 269 HANRELLTEWLKEDLNWDGLIVTDWADINNLCTRDHIAATKKEAVK--IVINAGIDMSMV 326 Query: 350 P------KALEELLSKGETTMKKLDD 369 P L+EL+ +GE +M+++DD Sbjct: 327 PYEVSFCDYLKELVEEGEVSMERIDD 352 >5IKK-A nrPDB Length = 657 Score = 32.5 bits (72), Expect = 0.32, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 14/78 (17%) Query: 150 YNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSK 209 + TL + D HP D RRV R+ E K G + D +FL + ++ Sbjct: 38 HATLSEVDD------HPEDPRRVLRVFEAIKKAG-------YVSNVPSPSD-VFLRIPAR 83 Query: 210 PEPLFQRLDDRVDDMLER 227 L + L +M +R Sbjct: 84 EATLEELLQVHSQEMYDR 101 >4I5O-A nrPDB Length = 363 Score = 32.5 bits (72), Expect = 0.35, Method: Composition-based stats. Identities = 47/308 (15%), Positives = 96/308 (31%), Gaps = 58/308 (18%) Query: 10 LNMSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGI 69 + + K I++ G TG GK+ L+ LA+ + +D+ + + + ++ E I Sbjct: 47 VELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG------EDVENI 100 Query: 70 PHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSS 129 ++ D + + +RG + Y+ + ++ KS Sbjct: 101 IQKLLQKCD-------YDVQK---------AQRGIV---------YIDEI--DKISRKSD 133 Query: 130 ERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSET 189 +TR + V P + HP +I + G Sbjct: 134 NPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA---- 189 Query: 190 FNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQ 249 F L + + RV+ G +K + S+ + + Sbjct: 190 -------------FAGLD-------KVISHRVETGSGIGFGATVKAKSDKASEGELLAQV 229 Query: 250 CENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIK 309 + + EF+ L N + E I+ +K K Q + + + D++ Sbjct: 230 EPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTK-QYQALFNLEGVDLE 288 Query: 310 GDIYLLDA 317 LDA Sbjct: 289 FRDEALDA 296 >1E94-E nrPDB Length = 449 Score = 32.5 bits (72), Expect = 0.38, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 24/36 (66%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 47 ++ K I++ G TGVGK++++ +LA+ N I ++ Sbjct: 54 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 89 >1NSY-A nrPDB Length = 271 Score = 32.5 bits (72), Expect = 0.41, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 7/154 (4%) Query: 147 DVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGK---KPSETFNEQKITLKFDTLF 203 + + D T ++ + + RM+ Y G+ T + + F T + Sbjct: 112 SAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKY 171 Query: 204 LWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEF 263 + PL + +L+ E L E + Q + I + E Sbjct: 172 GDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEI 231 Query: 264 LPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQV 297 +L GK V + +E+ + T KRQV Sbjct: 232 DDYLEGKEVSAKVS--EALEKRYSMTEH--KRQV 261 >2CHG-A nrPDB Length = 226 Score = 32.5 bits (72), Expect = 0.42, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 61/176 (34%), Gaps = 26/176 (14%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV----YKDIPIITNKHP----LQEREG 68 ++ +G G GK+ +I LA+ GE + +++ + I ++ +K G Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG 100 Query: 69 IPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVD--- 125 P ++ +D ++ + +E + + + + Y+ + Sbjct: 101 APFKII-FLDEADALT-ADAQAALRRTMEMYSKSCRFIL----SCNYVSRIIEPIQSRCA 154 Query: 126 ----TKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLE 177 + + ++ L+I E + + L + D+R+ L+ Sbjct: 155 VFRFKPVPKEAMKKRLLEICEKEGVKITEDGL-----EALIYISGGDFRKAINALQ 205 >4XZE-A nrPDB Length = 488 Score = 32.1 bits (71), Expect = 0.48, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 24/201 (11%) Query: 7 KGCLNMSKKVIVIAGT-TGVGKSQLSIQLAQKFNGEVINS-----DSMQVYKDIPIITNK 60 K LN K V G T + K ++ + K G VIN+ M ++ I Sbjct: 133 KAALNWRKDVGFSIGEYTSILKKAVAAEY--KVPGTVINNIKEMLSDMIRRRNRIINGGS 190 Query: 61 HPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGK--IPIVVGGTHYYLQT 118 +R + H+DW E+ S +F +I++ GK P++ G Sbjct: 191 DDAPKRGPVGR---EHLDWCREFASGKFLNAFNPPWGEINKAGKSGYPLLATG------- 240 Query: 119 LFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEI 178 K V+ + + + + + I + + + D D A + L + Sbjct: 241 -LAKLVELEG-KDVMDKAKASIAQLEGW--VKENKDQVDQDKAEDLLKGVRESYKTALAL 296 Query: 179 YYKTGKKPSETFNEQKITLKF 199 ++ ++ + + Sbjct: 297 AKQSNAFRAQGAQIDTVFSSY 317 >3J3U-A nrPDB Length = 810 Score = 32.1 bits (71), Expect = 0.50, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 23/196 (11%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYK-DIPIITNKHPLQEREGIPHHVMNH 76 + G TGVGK++L+ LA E I D + + D+ KH G P + + Sbjct: 542 IFLGPTGVGKTELARALA-----ESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGY 596 Query: 77 VDW---SEEYYSHRFETECMNAIEDIH-----------RRGKIPIVVGGTHYYLQTLFNK 122 + +E+ + ++AIE H G++ G T + T+ Sbjct: 597 DEGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 656 Query: 123 RVDTKSSERKLTRKQLDILESTDPDVIYNTLV-KCDPDIATKYHPNDYRRVQRMLEIYYK 181 + +SE L R + D + + K ++ + P R+ ++ + Sbjct: 657 TSNVGASE--LKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSL 714 Query: 182 TGKKPSETFNEQKITL 197 K +E + L Sbjct: 715 EKKHLTEIVSLMSDQL 730 >3H3A-A nrPDB Length = 441 Score = 32.1 bits (71), Expect = 0.55, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 16/169 (9%) Query: 68 GIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTK 127 + H + D + + RFE IE+ R Q + ++ + Sbjct: 164 RVLHTLSFVDDPTRILRAIRFEQRFDFRIEETTER-----------LLKQAVEEGYLE-R 211 Query: 128 SSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPS 187 ++ +L ++ ILE +P + + D + P Y ++ P Sbjct: 212 TTGPRLRQELEKILEEKNPLKSIRRMAQFD--VIKHLFPKTYYTPSMDEKMENLFRNIPW 269 Query: 188 ETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQL 236 N ++ + L ++L + ++ + DR L R + EI+ + Sbjct: 270 VEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYS--LRRNLINEIRHV 316 >4D81-A nrPDB Length = 283 Score = 31.7 bits (70), Expect = 0.57, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 20/34 (58%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV 50 I++ G G GK+ ++ +A + + E I+ D+ + Sbjct: 48 ILLYGPPGCGKTMIAAAVANELDSEFIHVDAASI 81 >3B0H-A nrPDB Length = 588 Score = 31.7 bits (70), Expect = 0.67, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 6/82 (7%) Query: 53 DIPIITNKHPLQEREGIPHHVMNHVDWS---EEYYSHRFETECMNAIEDIHRRGKIPIVV 109 + + N PH +++ ++ +Y + F A+ ++ R+ + V+ Sbjct: 200 GMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSQYVTANFRGN--PAVTNLPRKWNV-CVI 256 Query: 110 GGTHYYLQTLFNKRVDTKSSER 131 G Y N +++ Sbjct: 257 GSHDLYEHPQINDLAYMPATKD 278 >1KNQ-A nrPDB Length = 175 Score = 31.7 bits (70), Expect = 0.68, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 11 NMSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 N + V+ G +G GKS ++ ++A + + ++ D + ++I + + PL + + P Sbjct: 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 64 Query: 71 HHVMNHVDWSEEYYSHRFETECMNAIEDI 99 W + F + N + I Sbjct: 65 --------WLQALNDAAFAMQRTNKVSLI 85 >4LJ8-A nrPDB Length = 339 Score = 31.7 bits (70), Expect = 0.70, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 + G TGVGK++L+ LA +++ + D+ KH + G P Sbjct: 77 LFLGPTGVGKTELAKTLAATL----FDTEEAMIQIDMTEYMEKHAVSRLIGAP 125 >1M6E-X nrPDB Length = 359 Score = 31.3 bits (69), Expect = 0.74, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 20/130 (15%) Query: 174 RMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEI 233 R E+ + + + +W Q L ++ M+ G ++E Sbjct: 195 RAQEVVPGGRMVLTILGRRSEDRASTECCLIW---------QLLAMALNQMVSEGLIEEE 245 Query: 234 KQLYEYYSQNKFTPEQCE---------NGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIER 284 K + ++ ++TP E + + I E K D +E+ Sbjct: 246 K--MDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYN 303 Query: 285 MKTRTRQYAK 294 + R A+ Sbjct: 304 VARCMRAVAE 313 >3EMC-A nrPDB Length = 331 Score = 31.3 bits (69), Expect = 0.86, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 10/100 (10%) Query: 261 KEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDL 320 K+ + + G+ D + E ++ +T R KW++ + G+ YL+ A ++ Sbjct: 111 KQHIDTVVGRYKDQIYAWDVVNEAIEDKT-DLIMRDTKWLRLL------GEDYLVQAFNM 163 Query: 321 SQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKG 360 + A A+ ND+ P+K+E+ + LL +G Sbjct: 164 AH---EADPNALLFYNDYNETDPVKREKIYNLVRSLLDQG 200 >2VP0-A nrPDB Length = 250 Score = 31.3 bits (69), Expect = 0.86, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 202 LFLWLYSKPEPLFQRLDDRVD---DMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQV 257 L ++L + PE ++R+ R + LQE+ +L+E + ++ P+ C+ V Sbjct: 149 LIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA 207 >2D3W-A nrPDB Length = 248 Score = 31.3 bits (69), Expect = 0.86, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREG 68 I G G GKS LS LA + + EV +K ++ ++R G Sbjct: 31 AIMGPNGSGKSTLSATLAGREDYEVTGG--TVEFKGKDLLALSP--EDRAG 77 >1Z6G-A nrPDB Length = 218 Score = 30.9 bits (68), Expect = 1.2, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 8/72 (11%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH 76 +VI G +GVGK L +L +F Y + T K +E+EG+ ++ ++ Sbjct: 26 LVICGPSGVGKGTLIKKLLNEFPN--------YFYFSVSCTTRKKREKEKEGVDYYFIDK 77 Query: 77 VDWSEEYYSHRF 88 + ++ + F Sbjct: 78 TIFEDKLKNEDF 89 >1Q0U-A nrPDB Length = 219 Score = 30.5 bits (67), Expect = 1.3, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 15/139 (10%) Query: 110 GGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDY 169 G TH YL + K ++ ++ + + TL TK+ P D Sbjct: 53 GKTHAYLLPIMEKIKPERA---EVQAVITAPTRELATQIYHETLK------ITKFCPKDR 103 Query: 170 RRVQRMLEIYYKTGKKPSETFNEQ-----KITLKFDTLFLWLYSKPEPLFQRLDDRVDDM 224 V R L I +K E N Q + + + D D M Sbjct: 104 MIVARCL-IGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 Query: 225 LERGALQEIKQLYEYYSQN 243 L+ G + ++ Q+ ++ Sbjct: 163 LDMGFITDVDQIAARMPKD 181 >1QVR-A nrPDB Length = 854 Score = 30.5 bits (67), Expect = 1.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 + G TGVGK++L+ LA +++ + D+ KH + G P Sbjct: 592 LFLGPTGVGKTELAKTLAATL----FDTEEAMIRIDMTEYMEKHAVSRLIGAP 640 >6EF2-J nrPDB Length = 262 Score = 30.5 bits (67), Expect = 1.4, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 15 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYK 52 K +++ G G GK+ L+ +A + + I ++ + Sbjct: 40 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 77 >3JCO-J nrPDB Length = 405 Score = 30.5 bits (67), Expect = 1.4, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 15 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYK 52 K +++ G G GK+ L+ +A + + I ++ + Sbjct: 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 >1S4Q-A nrPDB Length = 228 Score = 30.5 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Query: 15 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVM 74 +V+V++G + VGKS + L ++ ++ + T E +G+ +H + Sbjct: 24 RVVVLSGPSAVGKSTVVRCLRERIP---------NLHFSVSATTRAPRPGEVDGVDYHFI 74 Query: 75 N 75 + Sbjct: 75 D 75 >2QSZ-A nrPDB Length = 207 Score = 30.5 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFN-GEVINSD 46 +I I+G T GK+ L+ L + VI+ D Sbjct: 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 >5JZV-A nrPDB Length = 206 Score = 30.2 bits (66), Expect = 1.7, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 26/177 (14%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM----QVYKDIPIITNKHPLQEREGIPHH 72 I++ GT GVGK+ L +LA K + IN + Q+Y +E + Sbjct: 40 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD--------EEYD----- 86 Query: 73 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIP--------IVVGGTHYYLQTLFNKRV 124 +D + I H P ++ T+ + L + Sbjct: 87 -CPILDEDRVVDELDNQMREGGVIVGYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGY 145 Query: 125 DTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYK 181 + K + + +L +V P + N+ ++ + +E + K Sbjct: 146 NEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIK 202 >4FIQ-A nrPDB Length = 335 Score = 30.2 bits (66), Expect = 2.0, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 15/105 (14%) Query: 62 PLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIV---VGGTHYYLQT 118 ++E G+P V+ + E + + + +I + G++P+V GG Sbjct: 205 SVKEISGLPKRVLENEPIYEGFTYREIVEDIYKILLEIKKLGRLPVVNFAAGGVATPADA 264 Query: 119 LFNKRVDT-----------KSSERKLTRKQLDILESTD-PDVIYN 151 + S+ K+ R ++ + D PDV+ Sbjct: 265 ALMMAMGMDGVFVGSGIFKSSNPPKMARAIVEAVNHWDEPDVLAE 309 >2SHK-A nrPDB Length = 173 Score = 29.8 bits (65), Expect = 2.2, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDS-MQVYKDIPI 56 I + G G GK+ + +LA+ E +++D MQ + + Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTV 45 >3PXI-A nrPDB Length = 758 Score = 29.8 bits (65), Expect = 2.3, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 10/127 (7%) Query: 18 VIAGTTGVGKSQLSIQLAQKFNGE---VINSDSMQVYKDIPIITNKHPLQEREGIPHHVM 74 + G TGVGK++L+ LA+ G+ +I D M Y + + ++ P+ V+ Sbjct: 525 IFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTSGGQLTEKVRRKPYSVV 583 Query: 75 NHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLT 134 +D E+ + F N + + G++ G T + T+ + +SE+ Sbjct: 584 -LLDAIEKAHPDVF-----NILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKV 637 Query: 135 RKQLDIL 141 +L Sbjct: 638 MGELKRA 644 >4Y0A-A nrPDB Length = 179 Score = 29.8 bits (65), Expect = 2.3, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 21/96 (21%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH 76 I + G G GK+ + LA+ E ++SD H ++ + G Sbjct: 11 IYLVGPMGAGKTTVGRHLAELLGREFLDSD--------------HEIERKTGA------T 50 Query: 77 VDWS-EEYYSHRFETECMNAIEDIHRRGKIPIVVGG 111 + W E+ F T + ++ R + + GG Sbjct: 51 IPWIFEKEGEVGFRTRETVVLNELTSRKALVLATGG 86 >2IPX-A nrPDB Length = 233 Score = 29.8 bits (65), Expect = 2.4, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 7/140 (5%) Query: 56 IITNKHPLQEREGIPHHVMNHVDWSEEYYSHR-FETECMNAIEDIHRRGKIPIVVGGTHY 114 + N P + G ++ D EY + F ++ AI + +I I G Sbjct: 25 VTKNLVPGESVYGEKRVSISEGDDKIEYRAWNPFRSKLAAAI--LGGVDQIHIKPGAKVL 82 Query: 115 YLQT----LFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYR 170 YL + D + + + D + P I HP+ YR Sbjct: 83 YLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR 142 Query: 171 RVQRMLEIYYKTGKKPSETF 190 + M+++ + +P +T Sbjct: 143 MLIAMVDVIFADVAQPDQTR 162 >5WRU-A nrPDB Length = 380 Score = 29.8 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 69 IPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKS 128 PH + ++W Y + + + + ++ + + ++ TH+Y K Sbjct: 261 YPHTLSLLLEWFRSYKMADTKKLNLIS-KQLYDKKESEDLIMKTHHYYLEFREDVKKLKE 319 Query: 129 SERKLTRKQLDILESTDPDVIYNTLVKCDPD 159 K T K+ D + + + Y+ L D + Sbjct: 320 EHSKETIKEHDYVNAQNIQFNYDKLNNNDDE 350 >4XGU-A nrPDB Length = 424 Score = 29.4 bits (64), Expect = 2.8, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 15 KVIVIAGTTGVGKSQLSIQLAQKFNGEV 42 ++I++ G G GK+ L LAQ + + Sbjct: 173 RLILLTGPPGTGKTSLCKGLAQHLSIRM 200 >3LVG-A nrPDB Length = 624 Score = 29.4 bits (64), Expect = 2.8, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 32/189 (16%) Query: 149 IYNTLVKCDPDIATKY-HPNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLY 207 +Y+ + D I T HP D +K G+ + L + + +L Sbjct: 313 LYDKYEEYDNAIITMMNHPTDA----------WKEGQFKDIITKVANVELYYRAIQFYLE 362 Query: 208 SKPEPLFQRLDD---RVDDMLERGALQEIKQL-----YEYYSQNKFTPEQCENGVWQVI- 258 KP L L R+D ++KQL Y QN E+ I Sbjct: 363 FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 Query: 259 --GFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLD 316 ++ + + + + L + K ++ +++ KG+ Sbjct: 423 EEDYQALRTSIDAYDNFDNISLAQ----------RLEKHELIEFRRIAAYLFKGNNRWKQ 472 Query: 317 ATDLSQWDT 325 + +L + D+ Sbjct: 473 SVELCKKDS 481 >6EPA-A nrPDB Length = 187 Score = 29.4 bits (64), Expect = 2.9, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 15/97 (15%) Query: 224 MLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIE 283 + E+G ++ KQ + +KF + F+ F + +D ++ E+ I Sbjct: 43 LTEQGFIKIYKQFFPDGDPSKFA----------SLVFRVFD-----ENNDGAIEFEEFIR 87 Query: 284 RMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDL 320 + +R ++ W ++ D G I + ++ Sbjct: 88 ALSITSRGNLDEKLHWAFRLYDVDNDGYITREEMYNI 124 >5X7K-A nrPDB Length = 268 Score = 29.4 bits (64), Expect = 2.9, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNGE--VINSDSMQVYK 52 V+ I G + GKS L+ L + ++ D+ +Y+ Sbjct: 40 VLGIIGPSASGKSTLARLLVGIWPVSEGIVRLDNADIYQ 78 >2GZA-A nrPDB Length = 361 Score = 29.4 bits (64), Expect = 2.9, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 17/26 (65%) Query: 14 KKVIVIAGTTGVGKSQLSIQLAQKFN 39 ++VIV+AG TG GK+ L L Q+ Sbjct: 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 >2BDT-A nrPDB Length = 189 Score = 29.4 bits (64), Expect = 2.9, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Query: 14 KKVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPIITNKHPLQ 64 KK+ +I G GVGKS +LA + N I D + + + + P + Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGD---IINHMVVGGYRPPWE 50 >5VQ9-D nrPDB Length = 432 Score = 29.4 bits (64), Expect = 3.3, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 18/104 (17%) Query: 15 KVIVIAGTTGVGKSQLSIQLAQKFN---------GEVINSDSMQVYKDIPIITNKHPLQE 65 +V+++ G G GK+ L LAQK G++I +S ++ + K + Sbjct: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232 Query: 66 REGIPHHVMN--------HVDWSEEYYSHRFETECMNAIEDIHR 101 + I +++ +D E + R D R Sbjct: 233 FQKI-QDLIDDKDALVFVLIDQVESLTAARNACRAGTEPSDAIR 275 >3K1J-A nrPDB Length = 604 Score = 29.0 bits (63), Expect = 3.6, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 16/222 (7%) Query: 13 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVY-----KDIPIITNKHPLQERE 67 K+ +++ G G GKS L +A+ E + + + V+ +++P I Q R Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETL--EDILVFPNPEDENMPRIKTVPACQGR- 115 Query: 68 GIPHHVMNHVDWSEEYYSHRFETECM----NAIEDIHRRGKIPIVVGGTHYYLQTLFNKR 123 I E S + + D R K P + T + L Sbjct: 116 RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DATGAHAGALLGDV 174 Query: 124 VDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTG 183 L + +E + ++ D + + TG Sbjct: 175 RHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITG 234 Query: 184 KKPSE---TFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVD 222 + + + F + + + L R+ Sbjct: 235 QSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIR 276 >6D00-1 nrPDB Length = 883 Score = 29.0 bits (63), Expect = 3.7, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 141/400 (35%), Gaps = 51/400 (12%) Query: 19 IAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHV 77 + G GVGK+ ++ LA + G++ +S +VY + I + + R + + Sbjct: 204 LVGEPGVGKTAIAEGLANRIVKGDIPSSLQKKVY-SLDIGSLLAGAKYRGEFEERLKAVL 262 Query: 78 DWSEEYYSHRFET---------------ECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNK 122 +E + F + N ++ + RG++ + T + K Sbjct: 263 KELKEAQAIVFIDEIHTVLGAGKSEGAIDAANLLKPMLARGELRCIGATTLTEYRQYVEK 322 Query: 123 RVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKT 182 + ER+ ++ TD I L + + L Y T Sbjct: 323 ---DPAFERRFQLVMVEEPSVTDTISILRGLKERYETHHGVRIADAAIVAAAQLAARYIT 379 Query: 183 GKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQ 242 + + + +T + L S+PE + +L+ R + E++ + Sbjct: 380 QRFMPDKAIDLIDEACANTR-VQLDSQPEAI-DKLERRHLQL-------EVEATALEKEK 430 Query: 243 NKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIERMKTRTRQYAKRQVKWIKK 302 + + ++ + ++ +E L L K + +L++ I + R + K + + ++ Sbjct: 431 DAASKQRLQEVRAEMARIQEELRPLKMKYESEKGRLDE-IRNLSQRLDEL-KAKAEDAER 488 Query: 303 MLIPDIKGDIYLLDATD----LSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLS 358 DI D L+Q SQ ERA L E++ Sbjct: 489 RYDLARAADIRYYAIPDLEKRLAQLQAEKSQ--------------ADAERADGLLAEVVG 534 Query: 359 KGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIHL 398 + M+ + WT + + ++ + ++ + E+Y K H+ Sbjct: 535 P-DQIMEVVSRWTGIPVSNLQRSEKEKLLHM-EEYMKQHV 572 >4KBG-A nrPDB Length = 365 Score = 29.0 bits (63), Expect = 4.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%) Query: 219 DRVDDMLERGALQEIKQLYE--YYSQNKFTPEQCENGVWQVIGFKEF-LPWLTGKTDDNT 275 D D+ML G +E++ L S+ + + + P L D Sbjct: 151 DEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEP 210 Query: 276 VKLED 280 V E+ Sbjct: 211 VTYEE 215 >4LCB-A nrPDB Length = 367 Score = 28.6 bits (62), Expect = 4.8, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV 50 I++ G G GK+ L+ +A + + I+ D+ + Sbjct: 133 ILLYGPPGNGKTMLAAAVANEIDSYFIHVDAASI 166 >4FWI-B nrPDB Length = 334 Score = 28.6 bits (62), Expect = 5.1, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 10/77 (12%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFN--GEVINSDSMQVYKDIPIIT------NKHPL 63 + V I G + GKS + + + G +++ +YK ++T K Sbjct: 32 LENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSG--RVLYKGKDLLTMREEELRKIRW 89 Query: 64 QEREGIPHHVMNHVDWS 80 +E +P ++ + Sbjct: 90 KEIALVPQAAQQSLNPT 106 >2YR0-A nrPDB Length = 263 Score = 28.6 bits (62), Expect = 5.9, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 235 QLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTGKTDDNTVKLEDCIER--MKTRTRQY 292 L E + Q + +PE W+ +E P G ++E+ + R +K RTR+ Sbjct: 136 ALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREV 195 Query: 293 AK 294 A+ Sbjct: 196 AR 197 >5A9Q-8 nrPDB Length = 656 Score = 28.2 bits (61), Expect = 6.7, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 18/184 (9%) Query: 173 QRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQE 232 Q L+++ P N +FD + + D+L+ L + Sbjct: 329 QSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHCKLLQ 388 Query: 233 IKQLYEYYSQNKFTPEQCENGVWQVIGFKEFL----PWLTGKTDDNTVKLEDCIERMKTR 288 LY + +F + +G++ + + V LE IER+ Sbjct: 389 SHNLYFGSNMREFLLLEYASGLF---AHPSLWQLGVDYFDYCPELGRVSLELHIERIPLN 445 Query: 289 TRQYA--------KRQVK-WIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIA--ISND 337 T Q A +RQ+ ++ + + W A A A +S+ Sbjct: 446 TEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRLGSALSWSIRAKDAAFATLVSDR 505 Query: 338 FISN 341 F+ + Sbjct: 506 FLRD 509 >5ZFQ-A nrPDB Length = 390 Score = 28.2 bits (61), Expect = 7.1, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNGE 41 +I++ G TG GKS + K N E Sbjct: 151 LILVTGPTGSGKSTTLAAIIDKINTE 176 >5FL3-A nrPDB Length = 368 Score = 28.2 bits (61), Expect = 7.3, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 12/25 (48%) Query: 16 VIVIAGTTGVGKSQLSIQLAQKFNG 40 +I++ G TG GKS L N Sbjct: 135 LILVTGPTGSGKSTTLAALIDHINL 159 >4EUN-A nrPDB Length = 200 Score = 28.2 bits (61), Expect = 7.4, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%) Query: 17 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 70 +V+ G +G GK+ ++ +A + E +D+ ++I + PL + + P Sbjct: 32 VVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWP 85 >2H92-A nrPDB Length = 219 Score = 27.8 bits (60), Expect = 8.0, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 12 MSKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQE 65 M I + G GKS ++ ++A + + +I D+ +Y+ + K E Sbjct: 1 MKAINIALDGPAAAGKSTIAKRVASELS--MIYVDTGAMYRALTYKYLKLNKTE 52 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.308 0.123 0.318 Lambda K H 0.267 0.0383 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,546,044 Number of Sequences: 36641 Number of extensions: 602674 Number of successful extensions: 2781 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 59 Number of HSP's that attempted gapping in prelim test: 2673 Number of HSP's gapped (non-prelim): 134 length of query: 428 length of database: 10,336,785 effective HSP length: 100 effective length of query: 328 effective length of database: 6,672,685 effective search space: 2188640680 effective search space used: 2188640680 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 60 (27.8 bits)