BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P07737 (140 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4X25-A nrPDB 289 3e-79 3UB5-P nrPDB 280 1e-76 1D1J-A nrPDB 189 5e-49 2V8C-A nrPDB 187 1e-48 4QWO-A nrPDB 77 3e-15 1K0K-A nrPDB 42 8e-05 3DAV-A nrPDB 42 1e-04 3NUL-A nrPDB 40 5e-04 5YSZ-A nrPDB 29 0.55 2BTU-A nrPDB 28 1.4 2J42-A nrPDB 27 2.2 3BYN-A nrPDB 27 2.3 3OM6-A nrPDB 26 5.0 1Q9J-A nrPDB 25 7.8 1NVM-B nrPDB 25 9.6 1HDG-O nrPDB 25 9.8 >4X25-A nrPDB Length = 140 Score = 289 bits (739), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 139/140 (99%), Positives = 139/140 (99%) Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY Sbjct: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLL GKEGVH Sbjct: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLTGKEGVH 120 Query: 121 GGLINKKCYEMASHLRRSQY 140 GGLINKKCYEMASHLRRSQY Sbjct: 121 GGLINKKCYEMASHLRRSQY 140 >3UB5-P nrPDB Length = 140 Score = 280 bits (716), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 132/139 (94%), Positives = 137/139 (98%) Query: 2 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYV 61 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVG+LVGKDRSSF+V Sbjct: 2 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGILVGKDRSSFFV 61 Query: 62 NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHG 121 NGLTLGGQKCSVIRDSLLQDGEF+MDLRTKSTGGAPTFN+TVT T KTLVLLMGKEGVHG Sbjct: 62 NGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNITVTMTAKTLVLLMGKEGVHG 121 Query: 122 GLINKKCYEMASHLRRSQY 140 G+INKKCYEMASHLRRSQY Sbjct: 122 GMINKKCYEMASHLRRSQY 140 >1D1J-A nrPDB Length = 139 Score = 189 bits (479), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 86/137 (62%), Positives = 107/137 (78%) Query: 2 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYV 61 AGW +Y+DNLM DG CQ+AAIVGY D+ VWAA G F +ITP E+ ++VGKDR F+ Sbjct: 1 AGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFFT 60 Query: 62 NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHG 121 NGLTLG +KCSVIRDSL DG+ +MD+RTKS GG PT+NV V + + LV++MGKEGVHG Sbjct: 61 NGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVHG 120 Query: 122 GLINKKCYEMASHLRRS 138 G +NKK YE+A +LRRS Sbjct: 121 GTLNKKAYELALYLRRS 137 >2V8C-A nrPDB Length = 140 Score = 187 bits (475), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 86/140 (61%), Positives = 106/140 (75%) Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60 MAGW +Y+DNLM DG CQ+AAIVGY D+ VWAA G F +ITP E+ ++VGKDR F+ Sbjct: 1 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIVGKDREGFF 60 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 NGLTLG +KCSVIRDSL DG+ +MD+RTKS GG PT+NV V + + LV +MGKEGVH Sbjct: 61 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH 120 Query: 121 GGLINKKCYEMASHLRRSQY 140 GG +NKK Y MA +LR S + Sbjct: 121 GGGLNKKAYSMAKYLRDSGF 140 >4QWO-A nrPDB Length = 157 Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 7/136 (5%) Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60 MA W+ I+++ + +DAAIV YK + +V AA+P +TF I P EV L+ ++ Sbjct: 25 MAEWHKIIEDISKNNKFEDAAIVDYKTTKNVLAAIPNRTFAKINPGEVIPLI----TNHN 80 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 + +G + C V +SL+ + ++M+L TG AP + + +T L+ LMGK Sbjct: 81 ILKPLIGQKFCIVYTNSLMDENTYAMELL---TGYAPVSPIVIARTHTALIFLMGKPTTS 137 Query: 121 GGLINKKCYEMASHLR 136 + + C + A+ +R Sbjct: 138 RRDVYRTCRDHATRVR 153 >1K0K-A nrPDB Length = 125 Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 17/139 (12%) Query: 4 WNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-GKDRSS-FYV 61 W AY DNL+ G D A++ + +VWA G +++ P E+G +V G D + Sbjct: 2 WQAYTDNLIGTGKV-DKAVIYSRAGDAVWATSGG---LSLQPNEIGEIVQGFDNPAGLQS 57 Query: 62 NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHG 121 NGL + GQK ++R + S+ R + G V +T +T+++ V Sbjct: 58 NGLHIQGQKFMLLRAD-----DRSIYGRHDAEG------VVCVRTKQTVIIAHYPPTVQA 106 Query: 122 GLINKKCYEMASHLRRSQY 140 G K ++A +L QY Sbjct: 107 GEATKIVEQLADYLIGVQY 125 >3DAV-A nrPDB Length = 127 Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 4 WNAYID-NLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEV-GVLVG-KDRSSFY 60 W AY+D +L+ G AAIV + SVWAA G N++P E+ G+ G +D S + Sbjct: 3 WQAYVDTSLLGTGKIDRAAIVS-RAGDSVWAASAG---FNLSPQEIQGLAAGFQDPPSMF 58 Query: 61 VNGLTLGGQKCSVIR 75 G+ L GQK IR Sbjct: 59 GTGIILAGQKYITIR 73 >3NUL-A nrPDB Length = 130 Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 18/141 (12%) Query: 4 WNAYIDN-LMAD--GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEV-GVLVGKDRSSF 59 W +Y+D+ LM D G AA + +D SVWA F + P E+ G+ + F Sbjct: 2 WQSYVDDHLMCDVEGNHLTAAAILGQDG-SVWAQ--SAKFPQLKPQEIDGIKKDFEEPGF 58 Query: 60 YV-NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEG 118 GL LGG+K VI+ GE +R K G VT+ KT++ LV E Sbjct: 59 LAPTGLFLGGEKYMVIQ------GEQGAVIRGKKGPGG----VTIKKTNQALVFGFYDEP 108 Query: 119 VHGGLINKKCYEMASHLRRSQ 139 + GG N + +L S+ Sbjct: 109 MTGGQCNLVVERLGDYLIESE 129 >5YSZ-A nrPDB Length = 360 Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 18 QDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYVNGLTLGGQKCSVIR 75 +D A+VGY DS A P T VN P E L+G++ + V+ +T G+ +R Sbjct: 296 EDVAVVGYDDSTVAEHAEPPMTSVN-QPTE---LMGREMARLLVDRIT--GETTEPVR 347 >2BTU-A nrPDB Length = 346 Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 7/38 (18%) Query: 50 VLVGKDRSSFYVNGLTLGGQKCSVIRDSLLQDGEFSMD 87 VL+G S + NG +L +R LL+DGE S+D Sbjct: 177 VLIGLASSGIHSNGYSL-------VRKVLLEDGELSLD 207 >2J42-A nrPDB Length = 721 Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%) Query: 87 DLRTKSTGGAPTFNVTVTKT----DKTLVLLMGKEGVHGGLIN 125 ++R +TG AP +NVT T T +++ + G+E + G +N Sbjct: 365 NIRYYNTGTAPVYNVTPTTTIVIDKQSVATIKGQESLIGDYLN 407 >3BYN-A nrPDB Length = 473 Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 19/24 (79%) Query: 64 LTLGGQKCSVIRDSLLQDGEFSMD 87 L + G+K SV++DS+L+ G+ +++ Sbjct: 449 LNIKGKKTSVVKDSILEQGQLTVN 472 >3OM6-A nrPDB Length = 456 Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Query: 58 SFYVNGLTLGGQKCSVIRDSLLQDGEFSMD 87 SF VN + G K SV++D +L+ G+ ++D Sbjct: 428 SFLVN---IDGSKTSVVKDRVLEQGQLTVD 454 >1Q9J-A nrPDB Length = 422 Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 2 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYV 61 GWN D+L+ G C SPS A + V++ ++ + G + Y+ Sbjct: 63 GGWNLVADDLLHSGICVIDGTAATNGSPSGNAELRLDQSVSLLHLQLILREGGAELTLYL 122 Query: 62 NGLTLGGQKCSVIRDSLL 79 + G +V+ D L Sbjct: 123 HHCMADGHHGAVLVDELF 140 >1NVM-B nrPDB Length = 312 Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 11/79 (13%) Query: 34 AVPGKTFVNITPAEVG------VLVGKDRSSFYVNGLTLGGQK-----CSVIRDSLLQDG 82 A PG +++TPA +G V + + VN +T GGQ +V R + + Sbjct: 94 AKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYA 153 Query: 83 EFSMDLRTKSTGGAPTFNV 101 E + +KS G N+ Sbjct: 154 EIVASISSKSAGPGTRANI 172 >1HDG-O nrPDB Length = 332 Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 22 IVGYKDSPSVWAAVPGKTFVNITPAEVGVLVG 53 I+GY D P V + + G TF I A + ++G Sbjct: 271 IIGYNDEPIVSSDIIGTTFSGIFDATITNVIG 302 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4X25-A nrPDB 225 5e-60 3UB5-P nrPDB 223 1e-59 2V8C-A nrPDB 211 9e-56 1D1J-A nrPDB 208 6e-55 4QWO-A nrPDB 165 5e-42 1K0K-A nrPDB 134 1e-32 3NUL-A nrPDB 129 4e-31 3DAV-A nrPDB 102 6e-23 Sequences not found previously or not previously below threshold: 5FEF-A nrPDB 104 1e-23 5FDS-A nrPDB 104 1e-23 5NZC-A nrPDB 101 8e-23 4ESP-A nrPDB 100 2e-22 1G5U-A nrPDB 96 4e-21 5EM0-A nrPDB 94 3e-20 5EM1-A nrPDB 91 2e-19 2ACG-A nrPDB 68 9e-13 1PRQ-A nrPDB 59 7e-10 3NEC-A nrPDB 34 0.018 2BMQ-A nrPDB 28 1.7 4K8X-A nrPDB 28 2.0 >4X25-A nrPDB Length = 140 Score = 225 bits (573), Expect = 5e-60, Method: Composition-based stats. Identities = 139/140 (99%), Positives = 139/140 (99%) Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY Sbjct: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLL GKEGVH Sbjct: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLTGKEGVH 120 Query: 121 GGLINKKCYEMASHLRRSQY 140 GGLINKKCYEMASHLRRSQY Sbjct: 121 GGLINKKCYEMASHLRRSQY 140 >3UB5-P nrPDB Length = 140 Score = 223 bits (569), Expect = 1e-59, Method: Composition-based stats. Identities = 132/139 (94%), Positives = 137/139 (98%) Query: 2 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYV 61 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVG+LVGKDRSSF+V Sbjct: 2 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGILVGKDRSSFFV 61 Query: 62 NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHG 121 NGLTLGGQKCSVIRDSLLQDGEF+MDLRTKSTGGAPTFN+TVT T KTLVLLMGKEGVHG Sbjct: 62 NGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNITVTMTAKTLVLLMGKEGVHG 121 Query: 122 GLINKKCYEMASHLRRSQY 140 G+INKKCYEMASHLRRSQY Sbjct: 122 GMINKKCYEMASHLRRSQY 140 >2V8C-A nrPDB Length = 140 Score = 211 bits (536), Expect = 9e-56, Method: Composition-based stats. Identities = 86/140 (61%), Positives = 106/140 (75%) Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60 MAGW +Y+DNLM DG CQ+AAIVGY D+ VWAA G F +ITP E+ ++VGKDR F+ Sbjct: 1 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIVGKDREGFF 60 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 NGLTLG +KCSVIRDSL DG+ +MD+RTKS GG PT+NV V + + LV +MGKEGVH Sbjct: 61 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH 120 Query: 121 GGLINKKCYEMASHLRRSQY 140 GG +NKK Y MA +LR S + Sbjct: 121 GGGLNKKAYSMAKYLRDSGF 140 >1D1J-A nrPDB Length = 139 Score = 208 bits (529), Expect = 6e-55, Method: Composition-based stats. Identities = 86/138 (62%), Positives = 107/138 (77%) Query: 2 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYV 61 AGW +Y+DNLM DG CQ+AAIVGY D+ VWAA G F +ITP E+ ++VGKDR F+ Sbjct: 1 AGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFFT 60 Query: 62 NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHG 121 NGLTLG +KCSVIRDSL DG+ +MD+RTKS GG PT+NV V + + LV++MGKEGVHG Sbjct: 61 NGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVHG 120 Query: 122 GLINKKCYEMASHLRRSQ 139 G +NKK YE+A +LRRS Sbjct: 121 GTLNKKAYELALYLRRSD 138 >4QWO-A nrPDB Length = 157 Score = 165 bits (418), Expect = 5e-42, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%) Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60 MA W+ I+++ + +DAAIV YK + +V AA+P +TF I P EV L+ ++ Sbjct: 25 MAEWHKIIEDISKNNKFEDAAIVDYKTTKNVLAAIPNRTFAKINPGEVIPLI----TNHN 80 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 + +G + C V +SL+ + ++M+L TG AP + + +T L+ LMGK Sbjct: 81 ILKPLIGQKFCIVYTNSLMDENTYAMELL---TGYAPVSPIVIARTHTALIFLMGKPTTS 137 Query: 121 GGLINKKCYEMASHLRRSQ 139 + + C + A+ +R + Sbjct: 138 RRDVYRTCRDHATRVRATG 156 >1K0K-A nrPDB Length = 125 Score = 134 bits (337), Expect = 1e-32, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 17/139 (12%) Query: 4 WNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-GKDRS-SFYV 61 W AY DNL+ G D A++ + +VWA G +++ P E+G +V G D Sbjct: 2 WQAYTDNLIGTGKV-DKAVIYSRAGDAVWATSGG---LSLQPNEIGEIVQGFDNPAGLQS 57 Query: 62 NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHG 121 NGL + GQK ++R + S+ R + G V +T +T+++ V Sbjct: 58 NGLHIQGQKFMLLRAD-----DRSIYGRHDAEG------VVCVRTKQTVIIAHYPPTVQA 106 Query: 122 GLINKKCYEMASHLRRSQY 140 G K ++A +L QY Sbjct: 107 GEATKIVEQLADYLIGVQY 125 >3NUL-A nrPDB Length = 130 Score = 129 bits (324), Expect = 4e-31, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 18/141 (12%) Query: 4 WNAYIDN-LMAD--GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEV-GVLVGKDRSSF 59 W +Y+D+ LM D G AA + +D SVWA F + P E+ G+ + F Sbjct: 2 WQSYVDDHLMCDVEGNHLTAAAILGQDG-SVWAQSA--KFPQLKPQEIDGIKKDFEEPGF 58 Query: 60 YV-NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEG 118 GL LGG+K VI+ GE +R K G VT+ KT++ LV E Sbjct: 59 LAPTGLFLGGEKYMVIQ------GEQGAVIRGKKGPGG----VTIKKTNQALVFGFYDEP 108 Query: 119 VHGGLINKKCYEMASHLRRSQ 139 + GG N + +L S+ Sbjct: 109 MTGGQCNLVVERLGDYLIESE 129 >5FEF-A nrPDB Length = 132 Score = 104 bits (259), Expect = 1e-23, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 18/142 (12%) Query: 4 WNAYIDN-LMAD--GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEV-GVLVGKDRSSF 59 W AY+D+ L+ D G AA + D SVWA F + P EV G++ D Sbjct: 4 WQAYVDDHLLCDIEGQHLSAAAIVGHDG-SVWAQSEN--FPELKPEEVAGMIKDFDEPGT 60 Query: 60 YV-NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEG 118 GL +GG K VI+ GE + +R K G +T+ KT +L++ + E Sbjct: 61 LAPTGLFVGGTKYMVIQ------GEPGVVIRGKKGTGG----ITIKKTGMSLIIGIYDEP 110 Query: 119 VHGGLINKKCYEMASHLRRSQY 140 + G N + +L + Sbjct: 111 MTPGQCNMVVERLGDYLIEQGF 132 >5FDS-A nrPDB Length = 131 Score = 104 bits (259), Expect = 1e-23, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 18/142 (12%) Query: 4 WNAYIDN-LMAD--GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEV-GVLVGKDRSSF 59 W AY+D+ LM + G AA + +D SVWA F E+ G++ Sbjct: 3 WQAYVDDHLMCEIEGNHLSAAAIIGQDG-SVWAQSAN--FPQFKSEEITGIMSDFHEPGT 59 Query: 60 YV-NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEG 118 GL +GG K VI+ GE +R K G VTV KT++ L++ + E Sbjct: 60 LAPTGLYIGGTKYMVIQ------GEPGAVIRGKKGPGG----VTVKKTNQALIIGIYDEP 109 Query: 119 VHGGLINKKCYEMASHLRRSQY 140 + G N + +L Y Sbjct: 110 MTPGQCNMIVERLGDYLIDQGY 131 >3DAV-A nrPDB Length = 127 Score = 102 bits (253), Expect = 6e-23, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 18/140 (12%) Query: 4 WNAYID-NLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEV-GVLVGK-DRSSFY 60 W AY+D +L+ G AAIV + SVWAA G N++P E+ G+ G D S + Sbjct: 3 WQAYVDTSLLGTGKIDRAAIV-SRAGDSVWAASAG---FNLSPQEIQGLAAGFQDPPSMF 58 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 G+ L GQK IR S+ + + G + T +++ E Sbjct: 59 GTGIILAGQKYITIRAEG-----RSIYGKLQKEG------IICVATKLCILVSHYPETTL 107 Query: 121 GGLINKKCYEMASHLRRSQY 140 G K +A +L Y Sbjct: 108 PGEAAKITEALADYLVGVGY 127 >5NZC-A nrPDB Length = 132 Score = 101 bits (252), Expect = 8e-23, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 20/143 (13%) Query: 4 WNAYIDN-LMAD----GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEV-GVLVGKDRS 57 W Y+D LM D G A+ + D SVWA F P E+ G++ + Sbjct: 2 WQTYVDEHLMCDIDGQGQQLAASAIVGHDG-SVWAQSSS--FPQFKPQEITGIMKDFEEP 58 Query: 58 SFYV-NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGK 116 GL LGG K VI+ GE +R K G +T+ KT + LV + + Sbjct: 59 GHLAPTGLHLGGIKYMVIQ------GEAGAVIRGKKGSGG----ITIKKTGQALVFGIYE 108 Query: 117 EGVHGGLINKKCYEMASHLRRSQ 139 E V G N + +L Sbjct: 109 EPVTPGQCNMVVERLGDYLIDQG 131 >4ESP-A nrPDB Length = 130 Score = 100 bits (248), Expect = 2e-22, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 18/141 (12%) Query: 4 WNAYIDN-LMAD--GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-GKDRSSF 59 W Y+D+ L+ + G +A + +D SVWA F P E+ ++ Sbjct: 2 WQTYVDDHLLCEIEGNHLSSAAILGQDG-SVWAQSSN--FPQFKPEEITAIMNDFAEPGS 58 Query: 60 YV-NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEG 118 GL LGG K VI+ GE +R K G VT+ KT++ L++ + E Sbjct: 59 LAPTGLYLGGTKYMVIQ------GEPGTVIRGKKGPGG----VTIKKTNQALIIGIYDEP 108 Query: 119 VHGGLINKKCYEMASHLRRSQ 139 + G N ++ +L + Sbjct: 109 MTPGQCNMIVEKLGDYLIDTG 129 >1G5U-A nrPDB Length = 131 Score = 96.5 bits (238), Expect = 4e-21, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 18/141 (12%) Query: 4 WNAYIDN-LMAD--GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVG-VLVGKDRSSF 59 W Y+D+ LM D G AA + D SVWA F EV V+ D Sbjct: 3 WQTYVDDHLMCDIDGHRLTAAAIIGHDG-SVWAQSSS--FPQFKSDEVAAVMKDFDEPGS 59 Query: 60 YV-NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEG 118 GL LGG K VI+ GE +R K G +TV +T + L++ + E Sbjct: 60 LAPTGLHLGGTKYMVIQ------GEPGAVIRGKKGSGG----ITVKRTGQALIIGIYDEP 109 Query: 119 VHGGLINKKCYEMASHLRRSQ 139 + G N + +L Sbjct: 110 LTPGQCNMIVERLGDYLLDQG 130 >5EM0-A nrPDB Length = 135 Score = 93.8 bits (231), Expect = 3e-20, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 20/143 (13%) Query: 4 WNAYIDN-LMAD----GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSS 58 W Y+D+ LM D G +A + D +VWA F P E+ ++ + + Sbjct: 5 WQTYVDDHLMCDIEGTGQHLTSAAIFGTDG-TVWAKSAS--FPEFKPNEIDAIIKEFNEA 61 Query: 59 FYV--NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGK 116 + GL LGG K VI+ GE +R K G + + KT + +V + Sbjct: 62 GQLAPTGLFLGGAKYMVIQ------GEAGAVIRGKKGAGG----ICIKKTGQAMVFGIYD 111 Query: 117 EGVHGGLINKKCYEMASHLRRSQ 139 E V G N + +L Sbjct: 112 EPVAPGQCNMVVERLGDYLLDQG 134 >5EM1-A nrPDB Length = 135 Score = 91.1 bits (224), Expect = 2e-19, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 20/143 (13%) Query: 4 WNAYID-----NLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEV-GVLVGKDRS 57 W Y+D ++ G +A + D +VWA F P E+ ++ Sbjct: 5 WQTYVDEHLMCDIEGTGQHLASAAIFGTDG-NVWAKSSS--FPEFKPDEINAIIKEFSEP 61 Query: 58 SFYV-NGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGK 116 GL L G K VI+ GE +R K G + + KT + +V + + Sbjct: 62 GALAPTGLFLAGAKYMVIQ------GEPGAVIRGKKGAGG----ICIKKTGQAMVFGIYE 111 Query: 117 EGVHGGLINKKCYEMASHLRRSQ 139 E V+ G N + +L Sbjct: 112 EPVNPGQCNMVVERLGDYLVDQG 134 >2ACG-A nrPDB Length = 125 Score = 68.3 bits (165), Expect = 9e-13, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 19/140 (13%) Query: 4 WNAYID-NLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVG--KDRSSFY 60 W Y+D NL+ G AAI+G+ + WA G ++PA L KD ++ Sbjct: 2 WQTYVDTNLVGTGAVTQAAIIGHDG--NTWATSAG---FAVSPANGAALANAFKDATAIR 56 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 NG L G + IR + S+ + S G V KT K +++ + E + Sbjct: 57 SNGFELAGTRYVTIRAD-----DRSVYGKKGSAG------VITVKTSKAILIGVYNEKIQ 105 Query: 121 GGLINKKCYEMASHLRRSQY 140 G ++A +L + Sbjct: 106 PGTAANVVEKLADYLIGQGF 125 >1PRQ-A nrPDB Length = 125 Score = 59.1 bits (141), Expect = 7e-10, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 19/140 (13%) Query: 4 WNAYID-NLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSS--FY 60 W Y+D NL+ G AAI+G + WA G +TPA+ L ++ Sbjct: 2 WQTYVDTNLVGTGAVTQAAILGLDG--NTWATSAG---FAVTPAQGQTLASAFNNADPIR 56 Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120 +G L G +R + S+ + S G V KT K++++ + E + Sbjct: 57 ASGFDLAGVHYVTLRAD-----DRSIYGKKGSAG------VITVKTSKSILVGVYNEKIQ 105 Query: 121 GGLINKKCYEMASHLRRSQY 140 G ++A +L + Sbjct: 106 PGTAANVVEKLADYLIGQGF 125 >3NEC-A nrPDB Length = 166 Score = 34.4 bits (77), Expect = 0.018, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 9/109 (8%) Query: 37 GKTFVNITPAEVGVLVGKDRSSFYVNGLTLGGQKCSVIR-DSLLQDGEFSMDLR--TKST 93 G ++ E + NG+ +GGQK V+R + + + + D+ +S Sbjct: 62 GNACGKVSINEASTIKAAVDDGSAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSK 121 Query: 94 GGAPTFNVTVTKTDKTLVLLMGKEGVHGGLINKKCYEM--ASHLRRSQY 140 GGA + + ++V+ + E N + + A +L +S Y Sbjct: 122 GGAHL----IKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166 >2BMQ-A nrPDB Length = 447 Score = 27.9 bits (60), Expect = 1.7, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 7/52 (13%) Query: 2 AGWNAYIDNLMADGTC---QDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGV 50 A W ++ +N + DG AA + + SV++++ G + P G+ Sbjct: 191 ANWKSFAENFVGDGYHVGWTHAAAL--RAGQSVFSSIAGN--AKLPPEGAGL 238 >4K8X-A nrPDB Length = 775 Score = 27.5 bits (59), Expect = 2.0, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 12/63 (19%) Query: 23 VGYKDSPSVWAAVPG----------KTFVN-ITPAEVGVLVGKDRSSFYVNGLTLGGQKC 71 V Y D+ + A +PG K F+ I P G+L + FYV G + +K Sbjct: 536 VLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLL-ELEYEGFYVRGFFVTKKKY 594 Query: 72 SVI 74 +VI Sbjct: 595 AVI 597 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.304 0.119 0.290 Lambda K H 0.267 0.0367 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,568,191 Number of Sequences: 36641 Number of extensions: 153793 Number of successful extensions: 410 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 366 Number of HSP's gapped (non-prelim): 41 length of query: 140 length of database: 10,336,785 effective HSP length: 87 effective length of query: 53 effective length of database: 7,149,018 effective search space: 378897954 effective search space used: 378897954 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 53 (25.2 bits)