BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P07347
(238 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4HNX-B nrPDB 494 e-140
6C9M-B nrPDB 168 2e-42
5C88-A nrPDB 73 1e-13
2PSW-A nrPDB 51 5e-07
5K04-B nrPDB 45 2e-05
4PV6-C nrPDB 39 0.003
4V0N-B nrPDB 30 0.84
5US1-A nrPDB 29 1.4
4EVY-A nrPDB 29 2.0
3JVN-A nrPDB 27 6.2
2LR8-A nrPDB 27 7.3
>4HNX-B nrPDB
Length = 248
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MPINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQ 60
MPINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQ
Sbjct: 1 MPINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQ 60
Query: 61 DENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSV 120
DENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSV
Sbjct: 61 DENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSV 120
Query: 121 MRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSY 180
MRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSY
Sbjct: 121 MRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSY 180
Query: 181 YQDGEDAYAMKKVLKLEELQISNFTHRRLKENEEKLEDDLESDLLEDIIKQGVNDIIV 238
YQDGEDAYAMKKVLKLEELQISNFTHRRLKENEEKLEDDLESDLLEDIIKQGVNDIIV
Sbjct: 181 YQDGEDAYAMKKVLKLEELQISNFTHRRLKENEEKLEDDLESDLLEDIIKQGVNDIIV 238
>6C9M-B nrPDB
Length = 236
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/192 (47%), Positives = 118/192 (61%), Gaps = 41/192 (21%)
Query: 3 INIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDE 62
+NIR A D++ MQ+ NL LPENY MKYY YH LSWP+ S++A +DE
Sbjct: 2 MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIA------------EDE 49
Query: 63 NDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMR 122
N K+VGYVL KM +DPD + P+GHITSL+V R
Sbjct: 50 NG--------------------------KIVGYVLAKMEEDPD---DVPHGHITSLAVKR 80
Query: 123 TYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQ 182
++RR+G+A+ LM QA A+ E A+YVSLHVR+SNRAALHLY +TL F++ +E YY
Sbjct: 81 SHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYA 140
Query: 183 DGEDAYAMKKVL 194
DGEDAYAMK+ L
Sbjct: 141 DGEDAYAMKRDL 152
>5C88-A nrPDB
Length = 173
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 44/196 (22%)
Query: 3 INIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDE 62
+R A ++DI + N LPENY +++ H+ + A FVA
Sbjct: 12 FTLRNARMDDIDQIIKINRLTLPENYPYYFFVEHLKEYGLAFFVAIVDN----------- 60
Query: 63 NDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPN----GHITSL 118
+VGY++ ++ + P+ GH+ S+
Sbjct: 61 ----------------------------SVVGYIMPRIEWGFSNIKQLPSLVRKGHVVSI 92
Query: 119 SVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEK 178
+V+ YRR GIA L+ ++ +++ + AE + L VR SN A+ LY + L F+ + + K
Sbjct: 93 AVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALY-EKLNFKKVKVLK 151
Query: 179 SYYQDGEDAYAMKKVL 194
YY DGEDAY M + L
Sbjct: 152 GYYADGEDAYLMARPL 167
>2PSW-A nrPDB
Length = 170
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 93 VGYVLVKMNDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSL 152
VG V +++ +Q+ +I +L + YRR+GI ++ L + + + L
Sbjct: 57 VGAVCCRVDHSQNQKRL----YIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYL 112
Query: 153 HVRQSNRAALHLYRDTLAFEVLSIEKSYYQDGE--DAYAMKKVLKLEELQ 200
HV+ SN +A+ YR FE++ +K+YY+ E DA+ ++K LK+ Q
Sbjct: 113 HVQISNESAIDFYR-KFGFEIIETKKNYYKRIEPADAHVLQKNLKVPSGQ 161
>5K04-B nrPDB
Length = 170
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 52/202 (25%)
Query: 4 NIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDEN 63
+I+ + D+ + NL L EN+ + +Y +++ WP+ + + T
Sbjct: 3 SIKPFQMEDLFELNPVNLDPLTENFNVSFYSQYLIEWPQLFYKSVET------------- 49
Query: 64 DKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMRT 123
P + GY++ K ++ + HIT+++V+
Sbjct: 50 ------------------------PNGQASGYMMAKTEGQLSKKEW--HTHITAVTVLDQ 83
Query: 124 YRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYY-- 181
YRR+G+A L + L L +V ++ L V+ +N LY + L + V YY
Sbjct: 84 YRRIGLASKLCLE-LENLTQVKDTLFIDLFVKVTNTLGRILY-EKLGYSVFRRVVGYYGR 141
Query: 182 ---------QDGEDAYAMKKVL 194
D DA+ M+K+L
Sbjct: 142 EIQKDRNKIDDSVDAFDMRKLL 163
>4PV6-C nrPDB
Length = 162
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 124 YRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQD 183
+RRMG+ LM L RE + V L VR N A+ Y+ F + ++ +YY D
Sbjct: 86 FRRMGVGSALMDAFLSLCREQNMLS-VRLEVRTDNDEAIRFYKK-YGFVITAMLPNYYSD 143
Query: 184 GEDAYAMKKVL 194
+AY M +++
Sbjct: 144 SSNAYTMWRIV 154
>4V0N-B nrPDB
Length = 425
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 34 MYHILSWPEASFVATTTTLDCEDSDEQ--DENDKLELTLDGTNDGRTIKLDPTYLA 87
M + W VATT + C D +Q DE D + + GT GR + L+P A
Sbjct: 199 MAFVEHWQGQPLVATTV-ITCMDVVKQAIDEPDAVSCLVVGTESGRILILNPAGTA 253
>5US1-A nrPDB
Length = 189
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 90 EKLVGYVLVKMNDDPDQQNEPPN-GHITSLSVMRTYRRMGIAENLMRQ 136
+KLVG+V + + N P + G++ ++ V ++YRR GI LM Q
Sbjct: 64 QKLVGHVAI-IQRHMALDNTPISVGYVEAMVVEQSYRRQGIGRQLMLQ 110
>4EVY-A nrPDB
Length = 166
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 111 PNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVS 151
P G + + V+ +RR G+A L+RQA ++ E+ S
Sbjct: 94 PVGFLEGIYVLPAHRRSGVATMLIRQAEVWAKQFSCTEFAS 134
>3JVN-A nrPDB
Length = 166
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 115 ITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLY 165
I L + + YRR G+AE LM + L++ E + + V N+ AL Y
Sbjct: 91 IDELYIEKEYRREGVAEQLMMRIEQELKDYGVKE-IFVEVWDFNKGALEFY 140
>2LR8-A nrPDB
Length = 70
Score = 26.9 bits (58), Expect = 7.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 74 NDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNE 109
ND R I L+ P K Y+ K++ +P+Q +E
Sbjct: 20 NDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSE 55
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4HNX-B nrPDB 346 6e-96
6C9M-B nrPDB 203 4e-53
5C88-A nrPDB 182 1e-46
5K04-B nrPDB 166 9e-42
2PSW-A nrPDB 139 1e-33
Sequences not found previously or not previously below threshold:
4PV6-C nrPDB 68 3e-12
5ISV-A nrPDB 53 2e-07
2CNT-A nrPDB 48 5e-06
5HGZ-A nrPDB 44 6e-05
1TIQ-A nrPDB 43 8e-05
3PP9-A nrPDB 39 0.002
3JVN-A nrPDB 36 0.013
6HD5-v nrPDB 35 0.036
4U9V-B nrPDB 35 0.044
4MI4-A nrPDB 34 0.070
1Y9K-A nrPDB 34 0.071
4NCZ-A nrPDB 34 0.079
5US1-A nrPDB 33 0.10
4R9M-A nrPDB 33 0.11
6CY6-A nrPDB 33 0.12
3FIX-A nrPDB 33 0.14
3K9U-A nrPDB 33 0.17
3EC4-A nrPDB 32 0.18
4EVY-A nrPDB 30 0.76
3OWC-A nrPDB 29 1.3
1UFH-A nrPDB 29 2.0
1ON0-A nrPDB 29 2.1
3TTH-A nrPDB 29 2.5
4OGD-A nrPDB 28 4.7
2VRN-A nrPDB 28 5.5
3CPF-A nrPDB 27 6.3
4RI1-A nrPDB 27 6.9
>4HNX-B nrPDB
Length = 248
Score = 346 bits (886), Expect = 6e-96, Method: Composition-based stats.
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MPINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQ 60
MPINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQ
Sbjct: 1 MPINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQ 60
Query: 61 DENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSV 120
DENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSV
Sbjct: 61 DENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSV 120
Query: 121 MRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSY 180
MRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSY
Sbjct: 121 MRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSY 180
Query: 181 YQDGEDAYAMKKVLKLEELQISNFTHRRLKENEEKLEDDLESDLLEDIIKQGVNDIIV 238
YQDGEDAYAMKKVLKLEELQISNFTHRRLKENEEKLEDDLESDLLEDIIKQGVNDIIV
Sbjct: 181 YQDGEDAYAMKKVLKLEELQISNFTHRRLKENEEKLEDDLESDLLEDIIKQGVNDIIV 238
>6C9M-B nrPDB
Length = 236
Score = 203 bits (517), Expect = 4e-53, Method: Composition-based stats.
Identities = 96/212 (45%), Positives = 127/212 (59%), Gaps = 45/212 (21%)
Query: 3 INIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDE 62
+NIR A D++ MQ+ NL LPENY MKYY YH LSWP+ S++A +DE
Sbjct: 2 MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIA------------EDE 49
Query: 63 NDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMR 122
N K+VGYVL KM +DPD + P+GHITSL+V R
Sbjct: 50 N--------------------------GKIVGYVLAKMEEDPD---DVPHGHITSLAVKR 80
Query: 123 TYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQ 182
++RR+G+A+ LM QA A+ E A+YVSLHVR+SNRAALHLY +TL F++ +E YY
Sbjct: 81 SHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYA 140
Query: 183 DGEDAYAMKKVLKLEELQISNFTHRRLKENEE 214
DGEDAYAMK+ L Q+++ R L+ E+
Sbjct: 141 DGEDAYAMKRDLT----QMADELRRHLELKEK 168
>5C88-A nrPDB
Length = 173
Score = 182 bits (461), Expect = 1e-46, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 44/196 (22%)
Query: 3 INIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDE 62
+R A ++DI + N LPENY +++ H+ + A FVA
Sbjct: 12 FTLRNARMDDIDQIIKINRLTLPENYPYYFFVEHLKEYGLAFFVAIVDN----------- 60
Query: 63 NDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPN----GHITSL 118
+VGY++ ++ + P+ GH+ S+
Sbjct: 61 ----------------------------SVVGYIMPRIEWGFSNIKQLPSLVRKGHVVSI 92
Query: 119 SVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEK 178
+V+ YRR GIA L+ ++ +++ + AE + L VR SN A+ LY + L F+ + + K
Sbjct: 93 AVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALY-EKLNFKKVKVLK 151
Query: 179 SYYQDGEDAYAMKKVL 194
YY DGEDAY M + L
Sbjct: 152 GYYADGEDAYLMARPL 167
>5K04-B nrPDB
Length = 170
Score = 166 bits (419), Expect = 9e-42, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 52/202 (25%)
Query: 4 NIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDEN 63
+I+ + D+ + NL L EN+ + +Y +++ WP+ + + T
Sbjct: 3 SIKPFQMEDLFELNPVNLDPLTENFNVSFYSQYLIEWPQLFYKSVET------------- 49
Query: 64 DKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMRT 123
P + GY++ K ++ + HIT+++V+
Sbjct: 50 ------------------------PNGQASGYMMAKTEGQLSKKEW--HTHITAVTVLDQ 83
Query: 124 YRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYY-- 181
YRR+G+A L + L L +V ++ L V+ +N LY + L + V YY
Sbjct: 84 YRRIGLASKLCLE-LENLTQVKDTLFIDLFVKVTNTLGRILY-EKLGYSVFRRVVGYYGR 141
Query: 182 ---------QDGEDAYAMKKVL 194
D DA+ M+K+L
Sbjct: 142 EIQKDRNKIDDSVDAFDMRKLL 163
>2PSW-A nrPDB
Length = 170
Score = 139 bits (349), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 89 GEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAE 148
+ VG V +++ +Q+ +I +L + YRR+GI ++ L + +
Sbjct: 53 NDIAVGAVCCRVDHSQNQKRL----YIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFD 108
Query: 149 YVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQDGE--DAYAMKKVLKLEELQ 200
+ LHV+ SN +A+ YR FE++ +K+YY+ E DA+ ++K LK+ Q
Sbjct: 109 NIYLHVQISNESAIDFYR-KFGFEIIETKKNYYKRIEPADAHVLQKNLKVPSGQ 161
>4PV6-C nrPDB
Length = 162
Score = 68.0 bits (164), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 48/191 (25%)
Query: 4 NIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDEN 63
IR + DI + +L E Y + WPE+ V T
Sbjct: 12 TIREFSPKDIESVYRIAQTSLTEYYTQALILDLHREWPESFMVYTV-------------- 57
Query: 64 DKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMRT 123
+VG+++ + I +V
Sbjct: 58 -------------------------AGSVVGFIV-------GSKYSRTEARILLFAVDER 85
Query: 124 YRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQD 183
+RRMG+ LM L RE V L VR N A+ Y+ F + ++ +YY D
Sbjct: 86 FRRMGVGSALMDAFLSLCRE-QNMLSVRLEVRTDNDEAIRFYK-KYGFVITAMLPNYYSD 143
Query: 184 GEDAYAMKKVL 194
+AY M +++
Sbjct: 144 SSNAYTMWRIV 154
>5ISV-A nrPDB
Length = 165
Score = 52.6 bits (124), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 118 LSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIE 177
++V Y+R G+ L+ + L + A + L VR SN AA+ LY ++L F +I
Sbjct: 69 IAVDPDYQRQGLGRALLEHLIDELEKRGVAT-LWLEVRASNAAAIALY-ESLGFNEATIR 126
Query: 178 KSYY--QDG-EDAYAMKKVLKL 196
++YY DG EDA M + +
Sbjct: 127 RNYYPTTDGREDAIIMALPISM 148
>2CNT-A nrPDB
Length = 160
Score = 47.6 bits (111), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 118 LSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIE 177
++V ++R G+ L+ + L + L VR SN AA+ LY ++L F +I
Sbjct: 69 IAVDPDFQRRGLGRMLLEHLIDELETRG-VVTLWLEVRASNAAAIALY-ESLGFNEATIR 126
Query: 178 KSYY---QDGEDAYAMKKVLKL 196
++YY Q EDA M + +
Sbjct: 127 RNYYPTAQGHEDAIIMALPISM 148
>5HGZ-A nrPDB
Length = 243
Score = 43.7 bits (101), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 113 GHITSLSVMRTYRRMGIAENLMRQALFALREVHQ--AEYVSLHVRQSNRAALHLYRDTLA 170
+I SL V++ +R+ GI L+ + Q + + LHV +N A++ Y +
Sbjct: 97 AYILSLGVVKEFRKHGIGSLLLESLKDHISTTAQDHCKAIYLHVLTTNNTAINFYENR-D 155
Query: 171 FEVLSIEKSYYQ 182
F+ YY
Sbjct: 156 FKQHHYLPYYYS 167
>1TIQ-A nrPDB
Length = 180
Score = 43.4 bits (100), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 46 VATTTTLDCEDSDEQDENDKLEL-----TLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKM 100
++ T D EN K L T + + ++ ++ GYV V +
Sbjct: 19 LSIETFNDTFKEQNSPENMKAYLESAFNTEQLEKELSNMSSQFFFIYFDHEIAGYVKVNI 78
Query: 101 NDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRA 160
+D ++ + I + + ++++ G+ ++L+ +A+ E + + L V + N
Sbjct: 79 DDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALE-RNKKNIWLGVWEKNEN 137
Query: 161 ALHLYRDTLAFEVLSIEKSYYQDGEDA-YAMKKVLKLE 197
A+ Y+ + F Y D E M K L LE
Sbjct: 138 AIAFYK-KMGFVQTGAHSFYMGDEEQTDLIMAKTLILE 174
>3PP9-A nrPDB
Length = 187
Score = 38.7 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 13/127 (10%)
Query: 47 ATTTTLDCEDSDEQDENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQ 106
E S Q++N++L + I + + +++G++++K
Sbjct: 46 TVEDVPSYEKSYLQNDNEELVYNEYINKPNQIIYIALLH----NQIIGFIVLK------- 94
Query: 107 QNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYR 166
+N +I ++V + YR +G+ + L+ QA + + L + +N AA Y
Sbjct: 95 KNWNNYAYIEDITVDKKYRTLGVGKRLIAQA-KQWAKEGNMPGIMLETQNNNVAACKFY- 152
Query: 167 DTLAFEV 173
+ F +
Sbjct: 153 EKCGFVI 159
>3JVN-A nrPDB
Length = 166
Score = 36.0 bits (81), Expect = 0.013, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 29/166 (17%)
Query: 5 IRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQDEND 64
IRRA D+ C+ + M K + H P+ A+ + + D+ +
Sbjct: 5 IRRAKEIDLYCLNSL---------MYKLHDEHHQQCPDLFKTASEIEEEKSIARYLDDPE 55
Query: 65 KLE--LTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMR 122
+ +D G ++ KLV ++ +++ L + +
Sbjct: 56 CMVYVAEMDDVIIGFITGHFCELISTVSKLV--MMATIDE---------------LYIEK 98
Query: 123 TYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDT 168
YRR G+AE LM + L + + + + + V N+ AL Y
Sbjct: 99 EYRREGVAEQLMMRIEQEL-KDYGVKEIFVEVWDFNKGALEFYNKQ 143
>6HD5-v nrPDB
Length = 176
Score = 34.5 bits (77), Expect = 0.036, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 7/136 (5%)
Query: 60 QDENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLS 119
+D D ++ P LV ++ K ++ + I L
Sbjct: 42 EDSLVAKNKKPSSKKDVHFTQMAYYSEIPVGGLVAKLVPKKQNELSLKGI----QIEFLG 97
Query: 120 VMRTYRRMGIAENLMRQALFALREVHQAE-YVSLHV--RQSNRAALHLYRDTLAFEVLSI 176
V+ YR I L++ A E HQ +V L + + + + + V +
Sbjct: 98 VLPNYRHKSIGSKLLKFAEDKCSECHQHNVFVYLPAVDDLTKQWFIAHGFEQVGETVNNF 157
Query: 177 EKSYYQDGEDAYAMKK 192
K D +DA +KK
Sbjct: 158 IKGVNGDEQDAILLKK 173
>4U9V-B nrPDB
Length = 197
Score = 34.5 bits (77), Expect = 0.044, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 125 RRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKS 179
RR G+ + Q L + Q + V L V + N A +R+ L FE+ S
Sbjct: 124 RRKGLG-KFLIQILQLMANSTQMKKVMLTVFKHNHGAYQFFREALQFEIDDSSPS 177
>4MI4-A nrPDB
Length = 197
Score = 33.7 bits (75), Expect = 0.070, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 123 TYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRD 167
++ G A L+ +AL + + LHV N A+HLY +
Sbjct: 116 EHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEE 160
>1Y9K-A nrPDB
Length = 157
Score = 33.7 bits (75), Expect = 0.071, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 89 GEKLVG-YVLVKMNDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQA 147
G ++G YVL++ P I +++V + GI + L+R A+ + +
Sbjct: 45 GGSVIGVYVLLETR--------PKTMEIMNIAVAEHLQGKGIGKKLLRHAVETAKGYGMS 96
Query: 148 EYVSLHVRQSNRAA--LHLYRDTLAFEVLSIEKSYYQD 183
+ L V N + L LY F + SI+ Y+
Sbjct: 97 K---LEVGTGNSSVSQLALY-QKCGFRIFSIDFDYFSK 130
>4NCZ-A nrPDB
Length = 176
Score = 33.7 bits (75), Expect = 0.079, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 123 TYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRD 167
++ G A L+ +AL + + LHV N A+HLY +
Sbjct: 95 EHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEE 139
>5US1-A nrPDB
Length = 189
Score = 33.0 bits (73), Expect = 0.10, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 90 EKLVGYVLVKMNDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQ 146
+KLVG+V + G++ ++ V ++YRR GI LM Q + +Q
Sbjct: 64 QKLVGHVAIIQRHMALDNTPISVGYVEAMVVEQSYRRQGIGRQLMLQTNKIIASCYQ 120
>4R9M-A nrPDB
Length = 210
Score = 33.0 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 123 TYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEV 173
Y+ G+A + A+ V + L V + N A+H+YR L F V
Sbjct: 117 EYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR-KLGFSV 166
>6CY6-A nrPDB
Length = 186
Score = 33.0 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 123 TYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEV 173
Y+ G+A + A+ V + L V + N A+H+YR L F V
Sbjct: 93 EYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR-KLGFSV 142
>3FIX-A nrPDB
Length = 183
Score = 32.6 bits (72), Expect = 0.14, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 35/192 (18%)
Query: 1 MPINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQ 60
M I IR+ +I D+ + + Y Y +I SW +
Sbjct: 25 MSIEIRKLSIEDLETLIEVARESWKWTYAGIYSEEYIESW------------------IR 66
Query: 61 DENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSV 120
++ K +L + + + L+G++ +K+ + L +
Sbjct: 67 EKYSKEKLLNEIVRSQSNLDILFLGAFADSTLIGFIELKI--------IANKAELLRLYL 118
Query: 121 MRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSY 180
Y I + L+ +A +++ L+V + N Y F+V
Sbjct: 119 KPEYTHKKIGKTLLLEAEKIMKKKG-ILECRLYVHRQNSVGFSFYY-KNGFKVEDT---- 172
Query: 181 YQDGEDAYAMKK 192
DG D + M+K
Sbjct: 173 --DGSD-FIMEK 181
>3K9U-A nrPDB
Length = 159
Score = 32.6 bits (72), Expect = 0.17, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 35/192 (18%)
Query: 1 MPINIRRATINDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLDCEDSDEQ 60
M I IR+ +I D+ + + Y Y +I SW +
Sbjct: 1 MSIEIRKLSIEDLETLIEVARESWKWTYAGIYSEEYIESW------------------IR 42
Query: 61 DENDKLELTLDGTNDGRTIKLDPTYLAPGEKLVGYVLVKMNDDPDQQNEPPNGHITSLSV 120
++ K +L + + + L+G++ +K+ + L +
Sbjct: 43 EKYSKEKLLNEIVRSQSNLDILFLGAFADSTLIGFIELKI--------IANKAELLRLYL 94
Query: 121 MRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSY 180
Y I + L+ +A +++ L+V + N Y F+V
Sbjct: 95 KPEYTHKKIGKTLLLEAEKIMKKKG-ILECRLYVHRQNSVGFSFYY-KNGFKVEDT---- 148
Query: 181 YQDGEDAYAMKK 192
DG D + M+K
Sbjct: 149 --DGSD-FIMEK 157
>3EC4-A nrPDB
Length = 228
Score = 32.2 bits (71), Expect = 0.18, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 123 TYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFE 172
YR G+A L+R+ + + E LH SN +A+ LY ++L F
Sbjct: 168 EYRGRGLAARLIRKVIAGMAARG--EVPYLHSYASNASAIRLY-ESLGFR 214
>4EVY-A nrPDB
Length = 166
Score = 30.3 bits (66), Expect = 0.76, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 105 DQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHL 164
+ P G + + V+ +RR G+A L+RQA ++ E+ S N + +
Sbjct: 88 NGTETSPVGFLEGIYVLPAHRRSGVATMLIRQAEVWAKQFSCTEFAS-DAALDNVISHAM 146
Query: 165 YRDTLAFEVLSIEKSYYQDGED 186
+R +L F+ Y+ D
Sbjct: 147 HR-SLGFQETEKVV-YFSKKID 166
>3OWC-A nrPDB
Length = 188
Score = 29.5 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 120 VMRTYRR-MGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYR 166
V+ R G+ ++ L E V L+V N AA HLYR
Sbjct: 100 VLAPSARGQGLGLPMLEALLAEAFADADIERVELNVYDWNAAARHLYR 147
>1UFH-A nrPDB
Length = 180
Score = 28.7 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 92 LVGYVLVKMNDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVS 151
+VG++ + + QQ I + YR G A+ + A R + +S
Sbjct: 96 IVGWLWIHAEPEHPQQE----AFIYDFGLYEPYRGKGYAKQALAALDQAARSMG-IRKLS 150
Query: 152 LHVRQSNRAALHLYRDTLAFEVLSIEKS 179
LHV N+ A LY T F+ + S
Sbjct: 151 LHVFAHNQTARKLYEQT-GFQETDVVMS 177
>1ON0-A nrPDB
Length = 158
Score = 28.7 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 92 LVGYVLVKMNDDPDQQNEPPNGHITSLSVMRTYRRMGIAENLMRQALFALREVHQAEYVS 151
+VG++ + + QQ I + YR G A+ + A R + +S
Sbjct: 72 IVGWLWIHAEPEHPQQE----AFIYDFGLYEPYRGKGYAKQALAALDQAARSMG-IRKLS 126
Query: 152 LHVRQSNRAALHLYRDTLAFEVLSIEKS 179
LHV N+ A LY T F+ + S
Sbjct: 127 LHVFAHNQTARKLYEQT-GFQETDVVMS 153
>3TTH-A nrPDB
Length = 170
Score = 28.7 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 127 MGIAENLMRQALFALREVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQDGE- 185
G A + + + L V + N AALH+YR + E + YY G
Sbjct: 98 KGYATEATDLTVEYAFSILNLHKIYLLVDEDNPAALHIYRKSGFAEEGKLVDEYYSKGRY 157
Query: 186 ----DAYAMKKVL 194
Y +KK L
Sbjct: 158 RTAIRMYVLKKSL 170
>4OGD-A nrPDB
Length = 465
Score = 27.6 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 180 YYQDGEDAYAMKKVLKLEELQ 200
YY D D + M L+ + Q
Sbjct: 94 YYADKADEFLMSTPLETDSGQ 114
>2VRN-A nrPDB
Length = 190
Score = 27.6 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 142 REVHQAEYVSLHVRQSNRAALHLYRDTLAFEVLSIEKSYYQDGEDAYAMKKVL 194
+E ++ ++V V+ S+ L L T+ + L +E+ + D Y K +
Sbjct: 59 QEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPI 111
>3CPF-A nrPDB
Length = 138
Score = 27.2 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 171 FEVLSIEKSYYQDGEDAYAMKKVLKLEELQISNFTHRRLKENEEKL 216
F+++ I+ Y +D+ +++ L+L E + ++ EE L
Sbjct: 76 FQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEIL 121
>4RI1-A nrPDB
Length = 186
Score = 27.2 bits (58), Expect = 6.9, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 113 GHITSLSVMRTYRRMGI---------AENLMRQALFALREVHQAEYVSLHVRQSNRAALH 163
G IT ++ + +GI E +++ F E Q + L V ++N A+
Sbjct: 83 GSITKINFFHKHGYLGIYKNPFLKNGGETILKALEFIAFEEFQLHSLHLEVMENNFKAIA 142
Query: 164 LYRDTLAFEVLSIEKSY 180
Y + +E+ K +
Sbjct: 143 FY-EKNHYELEGRLKGF 158
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.114 0.279
Lambda K H
0.267 0.0352 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,865,457
Number of Sequences: 36641
Number of extensions: 286129
Number of successful extensions: 955
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 74
length of query: 238
length of database: 10,336,785
effective HSP length: 94
effective length of query: 144
effective length of database: 6,892,531
effective search space: 992524464
effective search space used: 992524464
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 57 (26.8 bits)