BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P07250
         (355 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2IF8-A nrPDB                                                          721   0.0  
6E7F-A nrPDB                                                           75   5e-14
5W2G-A nrPDB                                                           71   8e-13
4O4C-A nrPDB                                                           60   1e-09
4FRF-A nrPDB                                                           47   2e-05
1W2F-A nrPDB                                                           33   0.20 
1TJU-A nrPDB                                                           31   0.78 
2A98-A nrPDB                                                           29   2.6  
1L0Y-B nrPDB                                                           29   2.9  

>2IF8-A nrPDB
          Length = 363

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MDTVNNYRVLEHKAAGHDGTLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDA 60
           MDTVNNYRVLEHKAAGHDGTLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDA
Sbjct: 1   MDTVNNYRVLEHKAAGHDGTLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDA 60

Query: 61  PLCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENL 120
           PLCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENL
Sbjct: 61  PLCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENL 120

Query: 121 LYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLN 180
           LYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLN
Sbjct: 121 LYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLN 180

Query: 181 QLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQLKKTFLKRL 240
           QLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQLKKTFLKRL
Sbjct: 181 QLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQLKKTFLKRL 240

Query: 241 QLFYNTMLEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDD 300
           QLFYNTMLEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDD
Sbjct: 241 QLFYNTMLEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDD 300

Query: 301 DAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIFMKF 355
           DAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIFMKF
Sbjct: 301 DAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIFMKF 355


>6E7F-A nrPDB
          Length = 278

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 45/241 (18%)

Query: 114 YLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQ 173
           YL LE++ + F+KP I+D+K+G+  YD  AS EK +  ++VS+      +GF + GM++ 
Sbjct: 73  YLKLEDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQ--QQVSKYPLMEEIGFLVLGMRV- 129

Query: 174 KNPSVLNQLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHL--SDARKHQ 231
                        Y   +DS Y   N+ YGRS T + + D +  +F+N +    DA    
Sbjct: 130 -------------YHVHSDS-YETENQHYGRSLTKETIKDGVSRFFHNGYCLRKDAVAAS 175

Query: 232 LKKTFLKRLQLFYNTMLEEEVRMISSSLLFIYEGDPERWEL-LNDVDKLMRDDFIDDDDD 290
           ++K   K LQ F N   ++++   +SSLLF+YEG  +     LN  D+ + + F+     
Sbjct: 176 IQKI-EKILQWFEN---QKQLNFYASSLLFVYEGSSQPTTTKLN--DRTLAEKFLSGGGG 229

Query: 291 DDDNDDDDDDDAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLD 350
                  +  + E                 + +IDFAH  + P    DE  + G++ L+ 
Sbjct: 230 SGGGGSQEIAEVE-----------------VRMIDFAH--VFPSNTIDEGYVYGLKHLIS 270

Query: 351 I 351
           +
Sbjct: 271 V 271


>5W2G-A nrPDB
          Length = 257

 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 67/262 (25%)

Query: 12  HKAAGH--DGTLTDGDGLLIFK----PAFPQELEFYKAIQVRDVSRRKSSADGDA-PLCS 64
           H+ AGH     L   DG ++ +    P  P+ELEFY  +   D        DG    L  
Sbjct: 6   HQVAGHMYGKILQHPDGTVLKQLQPPPRGPRELEFYNMVYAAD------CFDGVLLELRK 59

Query: 65  WMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLLYGF 124
           ++P Y G+ +                                 +  +  YL LE++ + F
Sbjct: 60  YLPKYYGIWSP-------------------------------PTAPNDLYLKLEDVTHKF 88

Query: 125 SKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLNQLSL 184
           +KP I+D+K+G+  YD  AS EK +  ++VS+      +GF + GM++            
Sbjct: 89  NKPCIMDVKIGQKSYDPFASSEKIQ--QQVSKYPLMEEIGFLVLGMRV------------ 134

Query: 185 EYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHL--SDARKHQLKKTFLKRLQL 242
             Y   +DS Y   N+ YGRS T + + D +  +F+N +    DA    ++K   K LQ 
Sbjct: 135 --YHVHSDS-YETENQHYGRSLTKETIKDGVSRFFHNGYCLRKDAVAASIQKI-EKILQW 190

Query: 243 FYNTMLEEEVRMISSSLLFIYE 264
           F N   ++++   +SSLLF+YE
Sbjct: 191 FEN---QKQLNFYASSLLFVYE 209


>4O4C-A nrPDB
          Length = 255

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 25/155 (16%)

Query: 113 QYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMK- 171
           +++ +ENL+Y + +P +LD+K+G   +D + +  K ++   V  T+T+ SLG R  GM+ 
Sbjct: 66  EFIRMENLMYKYKRPFVLDLKIGTQTWDPETASSKMKKRLVVDSTSTTTSLGVRFSGMER 125

Query: 172 -IQKNPSVLNQLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKH 230
            I +   +L             S Y+  +++     T  ++ + I+L+FN     D +K+
Sbjct: 126 NIGEEKPILY------------SRYLCTHEV----NTRDSLKEYIKLFFN-----DGKKY 164

Query: 231 --QLKKTFLKRLQLFYNTMLEEEVRMISSSLLFIY 263
             +L   F+ +L      M + E +M SSS+LF+Y
Sbjct: 165 RKELVPYFISQLDKMIEVMKKREYKMFSSSVLFVY 199


>4FRF-A nrPDB
          Length = 275

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 106 VKSEKSKQYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGF 165
           V+       +VLENLL  ++KP+++D+K+G   +   AS E  ++  +    TT+ S GF
Sbjct: 62  VEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGF 121

Query: 166 RICGMKI 172
           RI G ++
Sbjct: 122 RISGFEV 128


>1W2F-A nrPDB
          Length = 276

 Score = 33.1 bits (74), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 114 YLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRERMK 152
           YL L++LL GF  P +LD K+G   Y  +   + RER K
Sbjct: 60  YLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPK 98


>1TJU-A nrPDB
          Length = 474

 Score = 31.2 bits (69), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 203 GRSRTDQNVSDAIELYFNNPHLSDARKH--QLKKTFLKRLQLFYNTMLEEEVRMISSSLL 260
           GRSR DQ V+D ++L+  N  LS    H  QL KT ++R  +        E+ +I     
Sbjct: 112 GRSRNDQVVTD-LKLFMKNS-LSIISTHLLQLIKTLVERAAI--------EIDVILPGYS 161

Query: 261 FIYEGDPERWE--LLNDVDKLMRD 282
            + +  P RW   LL+    L RD
Sbjct: 162 HLQKAQPIRWSQFLLSHAVALTRD 185


>2A98-A nrPDB
          Length = 259

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 117 LENLLYGFSKPNILDIKLGKTLYDSKASLEKRER 150
           +E+LL  F  P+I+D K+G   Y  +  ++ RER
Sbjct: 46  MEDLLADFEGPSIMDCKMGSRTYLEEELVKARER 79


>1L0Y-B nrPDB
          Length = 221

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 258 SLLFIYEGDPERWELLNDVDKLMRDDFI 285
           ++ F+YEGDP   E +  VD+L+  D I
Sbjct: 20  NIYFLYEGDPVTHENVKSVDQLLSHDLI 47


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2IF8-A nrPDB                                                          525   e-149
6E7F-A nrPDB                                                          302   1e-82
5W2G-A nrPDB                                                          287   5e-78
4O4C-A nrPDB                                                          168   3e-42
4FRF-A nrPDB                                                          113   1e-25

Sequences not found previously or not previously below threshold:

1W2F-A nrPDB                                                           50   2e-06
2AQX-A nrPDB                                                           45   4e-05
2A98-A nrPDB                                                           40   0.002
5TG9-A nrPDB                                                           31   0.57 
5VY8-A nrPDB                                                           28   8.6  

>2IF8-A nrPDB
          Length = 363

 Score =  525 bits (1351), Expect = e-149,   Method: Composition-based stats.
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MDTVNNYRVLEHKAAGHDGTLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDA 60
           MDTVNNYRVLEHKAAGHDGTLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDA
Sbjct: 1   MDTVNNYRVLEHKAAGHDGTLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDA 60

Query: 61  PLCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENL 120
           PLCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENL
Sbjct: 61  PLCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENL 120

Query: 121 LYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLN 180
           LYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLN
Sbjct: 121 LYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLN 180

Query: 181 QLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQLKKTFLKRL 240
           QLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQLKKTFLKRL
Sbjct: 181 QLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQLKKTFLKRL 240

Query: 241 QLFYNTMLEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDD 300
           QLFYNTMLEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDD
Sbjct: 241 QLFYNTMLEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDD 300

Query: 301 DAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIFMKF 355
           DAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIFMKF
Sbjct: 301 DAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIFMKF 355


>6E7F-A nrPDB
          Length = 278

 Score =  302 bits (773), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 87/336 (25%)

Query: 25  DGLLIFK----PAFPQELEFYKAIQVRDVSRRKSSADGDA-PLCSWMPTYLGVLNEGAKI 79
           DG ++ +    P  P+ELEFY  +   D        DG    L  ++P Y G+ +     
Sbjct: 16  DGTVLKQLQPPPRGPRELEFYNMVYAAD------CFDGVLLELRKYLPKYYGIWSP---- 65

Query: 80  EQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLLYGFSKPNILDIKLGKTLY 139
                                       +  +  YL LE++ + F+KP I+D+K+G+  Y
Sbjct: 66  ---------------------------PTAPNDLYLKLEDVTHKFNKPCIMDVKIGQKSY 98

Query: 140 DSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLNQLSLEYYEEEADSDYIFIN 199
           D  AS EK +  ++VS+      +GF + GM++              Y   +DS Y   N
Sbjct: 99  DPFASSEKIQ--QQVSKYPLMEEIGFLVLGMRV--------------YHVHSDS-YETEN 141

Query: 200 KLYGRSRTDQNVSDAIELYFNNPHL--SDARKHQLKKTFLKRLQLFYNTMLEEEVRMISS 257
           + YGRS T + + D +  +F+N +    DA    ++K   K LQ F N   ++++   +S
Sbjct: 142 QHYGRSLTKETIKDGVSRFFHNGYCLRKDAVAASIQKI-EKILQWFEN---QKQLNFYAS 197

Query: 258 SLLFIYEGDPERWEL-LNDVDKLMRDDFIDDDDDDDDNDDDDDDDAEGSSEGPKDKKTTG 316
           SLLF+YEG  +     LN  D+ + + F+            +  + E             
Sbjct: 198 SLLFVYEGSSQPTTTKLN--DRTLAEKFLSGGGGSGGGGSQEIAEVE------------- 242

Query: 317 SLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIF 352
               + +IDFAH  + P    DE  + G++ L+ + 
Sbjct: 243 ----VRMIDFAH--VFPSNTIDEGYVYGLKHLISVL 272


>5W2G-A nrPDB
          Length = 257

 Score =  287 bits (734), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 137/350 (39%), Gaps = 113/350 (32%)

Query: 12  HKAAGH--DGTLTDGDGLLIFK----PAFPQELEFYKAIQVRDVSRRKSSADGDA-PLCS 64
           H+ AGH     L   DG ++ +    P  P+ELEFY  +   D        DG    L  
Sbjct: 6   HQVAGHMYGKILQHPDGTVLKQLQPPPRGPRELEFYNMVYAAD------CFDGVLLELRK 59

Query: 65  WMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLLYGF 124
           ++P Y G+ +                                 +  +  YL LE++ + F
Sbjct: 60  YLPKYYGIWSP-------------------------------PTAPNDLYLKLEDVTHKF 88

Query: 125 SKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLNQLSL 184
           +KP I+D+K+G+  YD  AS EK +  ++VS+      +GF + GM++            
Sbjct: 89  NKPCIMDVKIGQKSYDPFASSEKIQ--QQVSKYPLMEEIGFLVLGMRV------------ 134

Query: 185 EYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHL--SDARKHQLKKTFLKRLQL 242
             Y   +DS Y   N+ YGRS T + + D +  +F+N +    DA    ++K   K LQ 
Sbjct: 135 --YHVHSDS-YETENQHYGRSLTKETIKDGVSRFFHNGYCLRKDAVAASIQKI-EKILQW 190

Query: 243 FYNTMLEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDDDA 302
           F N   ++++   +SSLLF+YE                                      
Sbjct: 191 FEN---QKQLNFYASSLLFVYE-------------------------------------- 209

Query: 303 EGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIF 352
                    +  +G    + +IDFAH  + P    DE  + G++ L+ + 
Sbjct: 210 ------GSSQGGSGGEVEVRMIDFAH--VFPSNTIDEGYVYGLKHLISVL 251


>4O4C-A nrPDB
          Length = 255

 Score =  168 bits (426), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 130/347 (37%), Gaps = 114/347 (32%)

Query: 14  AAGHDGTLT-DGDGLLIFKPAFP-QELEFYKAIQVRDVSRRKSSADGDAPLCSWMPTYLG 71
           A GH G      DG  + KP    +E +FY  + ++D      +          +P + G
Sbjct: 5   AGGHGGPQQLHPDGQYLLKPCLSHRERDFY--LHIKDDKEWTGT--------GIIPKFYG 54

Query: 72  VLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLLYGFSKPNILD 131
           V     ++ + G   L                         +++ +ENL+Y + +P +LD
Sbjct: 55  V-----ELHEFGFGEL-------------------------EFIRMENLMYKYKRPFVLD 84

Query: 132 IKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMK--IQKNPSVLNQLSLEYYEE 189
           +K+G   +D + +  K ++   V  T+T+ SLG R  GM+  I +   +L          
Sbjct: 85  LKIGTQTWDPETASSKMKKRLVVDSTSTTTSLGVRFSGMERNIGEEKPILY--------- 135

Query: 190 EADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKH--QLKKTFLKRLQLFYNTM 247
              S Y+  +++     T  ++ + I+L+FN     D +K+  +L   F+ +L      M
Sbjct: 136 ---SRYLCTHEV----NTRDSLKEYIKLFFN-----DGKKYRKELVPYFISQLDKMIEVM 183

Query: 248 LEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDDDAEGSSE 307
            + E +M SSS+LF+Y+        L D                                
Sbjct: 184 KKREYKMFSSSVLFVYDS----TTTLED-------------------------------- 207

Query: 308 GPKDKKTTGSLSSMSLIDFAHSEITPGK--GYDENVIEGVETLLDIF 352
                       +  +IDFAH+ I   +    ++  + G+  L  I 
Sbjct: 208 ---------KKYNCKMIDFAHNWILSEEECTVEDGFLFGLNNLKSIL 245


>4FRF-A nrPDB
          Length = 275

 Score =  113 bits (283), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 52/248 (20%)

Query: 106 VKSEKSKQYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGF 165
           V+       +VLENLL  ++KP+++D+K+G   +   AS E  ++  +    TT+ S GF
Sbjct: 62  VEGSDGAAMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGF 121

Query: 166 RICGMKI--QKNPSVLNQLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPH 223
           RI G ++   K  S            + D   + + K    +      S     + ++ +
Sbjct: 122 RISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSVY 181

Query: 224 LSDARKHQLKKTFLKRLQLFYNTMLEEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDD 283
                 H +    L+    F N  L       S S+L +YE                 + 
Sbjct: 182 ---GGSHGILTQLLELKTWFENQTL---YHFNSCSILMVYEN----------------ES 219

Query: 284 FIDDDDDDDDNDDDDDDDAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKG-YDENVI 342
            +  +DDD                         +   + L+DFAH  +  G G  D N +
Sbjct: 220 ILKGNDDD-------------------------ARPQVKLVDFAH--VLDGNGVIDHNFL 252

Query: 343 EGVETLLD 350
            G+ + ++
Sbjct: 253 GGLCSFIN 260


>1W2F-A nrPDB
          Length = 276

 Score = 49.5 bits (116), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 16/168 (9%)

Query: 110 KSKQYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRER-MKRVSETTTSGSLGFRIC 168
             + YL L++LL GF  P +LD K+G   Y  +   + RER   R        ++     
Sbjct: 56  DGESYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPKLRKDMYKKMLAVDPEAP 115

Query: 169 GMKIQKNPSVLNQLSLEYYEEEADS-----DYIFINKLYGRSRTD---QNVSDAIELYFN 220
             +     +V     +++ E  + S         I K  G   TD       + +   F 
Sbjct: 116 TEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADGSCSTDFKTTRSREQVLRVFE 175

Query: 221 NPHLSDARKHQLKKTFLKRLQLFYNTMLEEEV----RMISSSLLFIYE 264
                D    ++ + +L RLQ   +T+   E      +I SSLLF+++
Sbjct: 176 EFVQGD---EEVLRRYLNRLQQIRDTLEVSEFFRRHEVIGSSLLFVHD 220


>2AQX-A nrPDB
          Length = 289

 Score = 45.3 bits (105), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 74/184 (40%), Gaps = 18/184 (9%)

Query: 110 KSKQYLVLENLLYGFSKPNILDIKLGKTLY-DSKASLEKRERMKRVSETTTSGSLGFRIC 168
             ++Y  +++LL  F  P ++D K+G   Y + + +  +++   R         +     
Sbjct: 69  DGERYNQMDDLLADFDSPCVMDCKMGVRTYLEEELTKARKKPSLRKDMYQKMVEVDPEAP 128

Query: 169 GMKIQKNPSVLNQLSLEYYEEEADSDYI------------FINKLYGRSRTDQNVSDAIE 216
             + +   +V     +++ E  + +  +             +N+ + +++T + V++A  
Sbjct: 129 TEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGSVNRDFKKTKTREQVTEAFR 188

Query: 217 LYFN-NPHLSDARKHQLKKTFLKRLQLFYNTMLEEEVRMISSSLLFIYEGDPERWELLND 275
            +   N ++  A + +LK            +   +   +I SSLLFI++   +    + D
Sbjct: 189 EFTKGNQNILIAYRDRLKAIRAT----LEISPFFKCHEVIGSSLLFIHDKKEQAKVWMID 244

Query: 276 VDKL 279
             K 
Sbjct: 245 FGKT 248


>2A98-A nrPDB
          Length = 259

 Score = 39.9 bits (91), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 109 EKSKQYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRER-MKRVSETTTSGSL 163
           +  + +  +E+LL  F  P+I+D K+G   Y  +  ++ RER   R        ++
Sbjct: 38  QDGQTFNQMEDLLADFEGPSIMDCKMGSRTYLEEELVKARERPRPRKDMYEKMVAV 93


>5TG9-A nrPDB
          Length = 332

 Score = 31.4 bits (69), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 119 NLLYGFSKPNILDIKLGKTLYDS--KASLEKRERMKRVSETTTSGSLGFRICGMKIQKNP 176
           +L   F    I++ +    +       + E   ++ R S      S+GFR  G++     
Sbjct: 71  DLHLEFKADLIIERRNSSDICYPGRFTNEEALRQIIRESGGIDKESMGFRYSGIRTDGAT 130

Query: 177 SVLNQLSLEYYEEEADSDYIFINKLYGRSR 206
           S   +    +Y E         N+++ +  
Sbjct: 131 SACKRTVSSFYSEMKWLSSSMNNQVFPQLN 160


>5VY8-A nrPDB
          Length = 908

 Score = 27.6 bits (59), Expect = 8.6,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 190 EADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQLKKTFL-KRLQLFYNTML 248
           E +  +   +K Y  + T +   D +  Y    +  D     L +    + L      +L
Sbjct: 790 EIEERFEQNDKHYKLNLTQEA-KDFLAKY---GYSDDMGARPLNRLIQNEILNKLALRIL 845

Query: 249 EEEVRMISSSLLFIYEGDP----------ERWELLNDVDKLMRDDFIDDDDDDDDNDDDD 298
           + E++   +  + + +G            E  E+L + +  +  D + DDD++D  + DD
Sbjct: 846 KNEIKDKETVNVVLKKGKSRDENVPEEAEECLEVLPNHEATIGADTLGDDDNEDSMEIDD 905

Query: 299 DDD 301
           D D
Sbjct: 906 DLD 908


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.308    0.115    0.286 

Lambda     K      H
   0.267   0.0347    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,654,531
Number of Sequences: 36641
Number of extensions: 442029
Number of successful extensions: 2439
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 451
length of query: 355
length of database: 10,336,785
effective HSP length: 98
effective length of query: 257
effective length of database: 6,745,967
effective search space: 1733713519
effective search space used: 1733713519
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.6 bits)