BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P07143 (309 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6GIQ-D nrPDB 645 0.0 1KYO-D nrPDB 527 e-150 3H1H-D nrPDB 300 6e-82 6FO2-Q nrPDB 290 5e-79 5NMI-D nrPDB 285 2e-77 5XTH-AH nrPDB 285 2e-77 5KLI-B nrPDB 143 1e-34 2YIU-B nrPDB 136 1e-32 1ZRT-D nrPDB 119 2e-27 1QCR-D nrPDB 77 1e-14 1F1C-A nrPDB 34 0.073 2GPY-A nrPDB 31 0.80 2YEV-B nrPDB 30 1.9 6CUK-A nrPDB 29 2.5 1CCR-A nrPDB 29 2.8 5NCU-A nrPDB 28 4.4 5NCS-A nrPDB 28 4.5 5GLA-A nrPDB 27 9.4 >6GIQ-D nrPDB Length = 309 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/309 (100%), Positives = 309/309 (100%) Query: 1 MFSNLSKRWAQRTLSKSFYSTATGAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAE 60 MFSNLSKRWAQRTLSKSFYSTATGAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAE Sbjct: 1 MFSNLSKRWAQRTLSKSFYSTATGAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAE 60 Query: 61 AMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSH 120 AMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSH Sbjct: 61 AMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSH 120 Query: 121 TNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLI 180 TNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLI Sbjct: 121 TNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLI 180 Query: 181 VKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT 240 VKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT Sbjct: 181 VKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT 240 Query: 241 PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKF 300 PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKF Sbjct: 241 PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKF 300 Query: 301 VFNPPKPRK 309 VFNPPKPRK Sbjct: 301 VFNPPKPRK 309 >1KYO-D nrPDB Length = 248 Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust. Identities = 248/248 (100%), Positives = 248/248 (100%) Query: 62 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 121 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT Sbjct: 1 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60 Query: 122 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 181 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV Sbjct: 61 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120 Query: 182 KARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTP 241 KARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTP Sbjct: 121 KARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTP 180 Query: 242 ATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFV 301 ATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFV Sbjct: 181 ATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFV 240 Query: 302 FNPPKPRK 309 FNPPKPRK Sbjct: 241 FNPPKPRK 248 >3H1H-D nrPDB Length = 241 Score = 300 bits (767), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 145/242 (59%), Positives = 184/242 (76%), Gaps = 1/242 (0%) Query: 65 AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEE 124 E LH PA+ WSH GP DH+S+RRG+QVY++VC+ACHS+D VA+R L+GV+HT E Sbjct: 1 GELELHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAE 60 Query: 125 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 184 + +AEE E D PDE G RPGK+SDY P PYPN +AARAAN GALPPDLS IV AR Sbjct: 61 AKALAEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNAR 120 Query: 185 HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATT 244 HGG DY+FSLLTGY D PPAGV + G +YNPYFPG +I MA ++++++EY+DGTPAT Sbjct: 121 HGGEDYVFSLLTGYCD-PPAGVVVREGLHYNPYFPGQAIGMAPPIYNEILEYDDGTPATM 179 Query: 245 SQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNP 304 SQ+AKDV TFL W AEPEHD+RKR+GLK ++I + L L ++K+ KW+ +K+RK + P Sbjct: 180 SQIAKDVCTFLRWAAEPEHDQRKRMGLKMLLISALLTSLLYYMKRHKWSVLKSRKMAYRP 239 Query: 305 PK 306 PK Sbjct: 240 PK 241 >6FO2-Q nrPDB Length = 325 Score = 290 bits (742), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 142/246 (57%), Positives = 186/246 (75%), Gaps = 1/246 (0%) Query: 61 AMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSH 120 A++A++ LH P+Y WSH G + DH SIRRG+QVY++VC++CHS+D VA+R LVGV + Sbjct: 81 AVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCY 140 Query: 121 TNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLI 180 T +E + +AEE E D P+E G RPGKLSDY P PYPN +AARAAN GALPPDLS I Sbjct: 141 TEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYI 200 Query: 181 VKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT 240 V+ARHGG DY+FSLLTGY EPP GV+L G +NPYFPG +I MA ++++++E++DGT Sbjct: 201 VRARHGGEDYVFSLLTGY-CEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGT 259 Query: 241 PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKF 300 PAT SQ+AKDV TFL W AEPEHD RKR+GLK ++++ L L +K+ KW+ +K+RK Sbjct: 260 PATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 319 Query: 301 VFNPPK 306 + PPK Sbjct: 320 AYRPPK 325 >5NMI-D nrPDB Length = 240 Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 140/238 (58%), Positives = 180/238 (75%), Gaps = 1/238 (0%) Query: 69 LHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNM 128 LH P+Y WSH G + DH SIRRG+QVY++VC++CHS+D VA+R LVGV +T +E + + Sbjct: 4 LHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKAL 63 Query: 129 AEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGC 188 AEE E D P+E G RPGKLSDY P PYPN +AARAAN GALPPDLS IV+ARHGG Sbjct: 64 AEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGE 123 Query: 189 DYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMA 248 DY+FSLLTGY EPP GV+L G +NPYFPG +I MA ++++++E++DGTPAT SQ+A Sbjct: 124 DYVFSLLTGY-CEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVA 182 Query: 249 KDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPK 306 KDV TFL W AEPEHD RKR+GLK ++++ L L +K+ KW+ +K+RK + PPK Sbjct: 183 KDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK 240 >5XTH-AH nrPDB Length = 241 Score = 285 bits (728), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 140/238 (58%), Positives = 179/238 (75%), Gaps = 1/238 (0%) Query: 69 LHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNM 128 LH P+Y WSH G + DH SIRRG+QVY++VCA+CHS+D VA+R LVGV +T +E + + Sbjct: 5 LHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKEL 64 Query: 129 AEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGC 188 A E E D P+E G RPGKL DY P PYPN +AARAAN GALPPDLS IV+ARHGG Sbjct: 65 AAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSYIVRARHGGE 124 Query: 189 DYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMA 248 DY+FSLLTGY EPP GV+L G +NPYFPG +IAMA ++ D++E++DGTPAT SQ+A Sbjct: 125 DYVFSLLTGY-CEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATMSQIA 183 Query: 249 KDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPK 306 KDV TFL W +EPEHD RKR+GLK +++++ L L +K+ KW+ +K+RK + PPK Sbjct: 184 KDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRPPK 241 >5KLI-B nrPDB Length = 272 Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/272 (37%), Positives = 133/272 (48%), Gaps = 55/272 (20%) Query: 68 GLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLV---GVSHTNEE 124 G H +S GPF TFD ++RG QVY EVCAACH + V R+L G ++ Sbjct: 3 GGHVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQ 62 Query: 125 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 184 VR A +F DE E G + R GK +D+ P +A + A PDLSL+ KAR Sbjct: 63 VRAYATQFTVTDE--ETG--EDREGKPTDHFP---------HSALENA--PDLSLMAKAR 107 Query: 185 HG-----------------GCDYIFSLLTGYPDEPP--AGVALPPGSNYNPYFPGGS--- 222 G G +YI+S+LTG+P+EPP A P G YN F GS Sbjct: 108 AGFHGPMGTGISQLFNGIGGPEYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPD 167 Query: 223 ---------------IAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERK 267 IAM L DD+VEY DG A+ MA+DV+ FL W AEP+ RK Sbjct: 168 TCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARK 227 Query: 268 RLGLKTVIILSSLYLLSIWVKKFKWAGIKTRK 299 + G V+ L+ L +L K WAG+K +K Sbjct: 228 QAGFTAVMFLTVLSVLLYLTNKRLWAGVKGKK 259 >2YIU-B nrPDB Length = 263 Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/266 (38%), Positives = 127/266 (47%), Gaps = 45/266 (16%) Query: 58 TAEAMTAAEHG-LHAPAY----AWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAW 112 TA A A E G HA A+ ++S GPF FD ++RG QVY EVC+ACH L V Sbjct: 10 TAPAGAAQEAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPL 69 Query: 113 RTLV---GVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAAN 169 RTL G ++VR A F+ D E+ P+ P + + Sbjct: 70 RTLADEGGPQLPEDQVRAYAANFDITDPETEEDRPR-------------VPTDHFPTVSG 116 Query: 170 QGALPPDLSLIVKARHG-----------------GCDYIFSLLTGYPDEP--PAGVALPP 210 +G + PDLSL+ KAR G G +YI ++LTGY E AG L Sbjct: 117 EG-MGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLTGYDGEEKEEAGAVL-- 173 Query: 211 GSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLG 270 +N F G I MA L DD V YEDGTPAT QMA DV FL W AEP+ +RK++G Sbjct: 174 --YHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVG 231 Query: 271 LKTVIILSSLYLLSIWVKKFKWAGIK 296 +VI L L L K W IK Sbjct: 232 FVSVIFLIVLAALLYLTNKKLWQPIK 257 >1ZRT-D nrPDB Length = 258 Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 123/265 (46%), Gaps = 45/265 (16%) Query: 70 HAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMA 129 + P +A+S G F +D A +RRG+QVY EVC+ACH + V RTL + + Sbjct: 3 NVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVR 62 Query: 130 EEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR----- 184 E D ++ + ++R K +D P R + + PDLS++ KAR Sbjct: 63 EYAAGLDTIIDKDSGEERDRKETDMFP--------TRVGD--GMGPDLSVMAKARAGFSG 112 Query: 185 ------------HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSI--------- 223 GG +YI++ + G+ + P G YN F G + Sbjct: 113 PAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAAG 172 Query: 224 ------AMARV---LFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTV 274 + AR+ L DD V YEDGTPAT QMA+DV+ FL W AEP+ RK++GL + Sbjct: 173 VKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAM 232 Query: 275 IILSSLYLLSIWVKKFKWAGIKTRK 299 ++L L ++ K WA K K Sbjct: 233 VMLGLLSVMLYLTNKRLWAPYKGHK 257 >1QCR-D nrPDB Length = 75 Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 40/75 (53%), Positives = 57/75 (76%) Query: 232 DMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFK 291 +++E++DGTPAT SQ+AKDV TFL W AEPEHD RKR+GLK ++++ L L +K+ K Sbjct: 1 EVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHK 60 Query: 292 WAGIKTRKFVFNPPK 306 W+ +K+RK + PPK Sbjct: 61 WSVLKSRKLAYRPPK 75 >1F1C-A nrPDB Length = 129 Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Query: 90 IRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPG 149 I++G QV+ CA CH+L GV+ TN +V N++ E P P+ Sbjct: 24 IKKGQQVFNAACAQCHAL---------GVTRTNPDV-NLSPEALALATP-----PRDNIA 68 Query: 150 KLSDYIPGP 158 L DYI P Sbjct: 69 ALVDYIKNP 77 >2GPY-A nrPDB Length = 233 Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 214 YNPYF-PGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAE-PEHDER 266 Y+P PGG I VLF +V D Q+A + T+ W E P++D R Sbjct: 146 YSPMVRPGGLILSDNVLFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTR 200 >2YEV-B nrPDB Length = 337 Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust. Identities = 10/18 (55%), Positives = 14/18 (77%) Query: 92 RGYQVYREVCAACHSLDR 109 RG QV+++ CAACH + R Sbjct: 238 RGQQVFQQNCAACHGVAR 255 >6CUK-A nrPDB Length = 123 Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 83 ETFDHASIRRGYQVYREVCAACHSLD 108 E D A ++G Q++ C ACH LD Sbjct: 26 EQIDAALAQQGEQLFNTYCTACHRLD 51 >1CCR-A nrPDB Length = 112 Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 23/82 (28%) Query: 91 RRGYQVYREVCAACHSLDRVAWR---------------TLVGVSHTNEEVRNMAEEFEYD 135 + G ++++ CA CH++D+ A T G S++ + +NMA +E + Sbjct: 13 KAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTAD-KNMAVIWEEN 71 Query: 136 DEPDEQGNPKKRPGKLSDYIPG 157 D NPKK YIPG Sbjct: 72 TLYDYLLNPKK-------YIPG 86 >5NCU-A nrPDB Length = 336 Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Query: 257 WCAEPEHDERKRL-----GLKTVIILSSLYLLSIWVKKFKWAGIKTRKF 300 WCA+ +D+ ++ G + +++++Y IWV +FK + K F Sbjct: 138 WCAQKTNDKITKILDYIPGNAFMYLINAVYFKGIWVTQFKKSDTKRAPF 186 >5NCS-A nrPDB Length = 375 Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Query: 257 WCAEPEHDERKRL-----GLKTVIILSSLYLLSIWVKKFKWAGIKTRKF 300 WCA+ +D+ ++ G + +++++Y IWV +FK + K F Sbjct: 138 WCAQKTNDKITKILDYIPGNAFMYLINAVYFKGIWVTQFKKSDTKRAPF 186 >5GLA-A nrPDB Length = 278 Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 32 LTQKLVTAGVAAAGITASTLLYADSLTAEAMTAAEHGLHA-PAYAWS 77 +T+K V AG+ A + A+TL Y+D+ A + A G A AYA S Sbjct: 87 ITEKHVGAGMTVAELCAATLQYSDNTAANLLIALLGGPQAVTAYARS 133 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6GIQ-D nrPDB 543 e-155 1KYO-D nrPDB 424 e-119 6FO2-Q nrPDB 405 e-113 3H1H-D nrPDB 402 e-112 5NMI-D nrPDB 400 e-112 5XTH-AH nrPDB 397 e-111 1ZRT-D nrPDB 320 4e-88 5KLI-B nrPDB 310 5e-85 2YIU-B nrPDB 306 8e-84 1QCR-D nrPDB 115 3e-26 Sequences not found previously or not previously below threshold: 1F1C-A nrPDB 37 0.009 4WYG-A nrPDB 34 0.11 2YEV-B nrPDB 33 0.13 1YIQ-A nrPDB 33 0.14 4IXR-V nrPDB 33 0.15 1KV9-A nrPDB 33 0.21 1COR-A nrPDB 32 0.31 6NAU-A nrPDB 32 0.39 3JRW-A nrPDB 32 0.41 3A0H-V nrPDB 31 0.51 2CHP-A nrPDB 31 0.78 5ZFR-A nrPDB 31 0.94 2WNE-A nrPDB 30 1.7 4GF4-A nrPDB 29 2.6 2CA3-B nrPDB 27 8.9 CONVERGED! >6GIQ-D nrPDB Length = 309 Score = 543 bits (1398), Expect = e-155, Method: Composition-based stats. Identities = 309/309 (100%), Positives = 309/309 (100%) Query: 1 MFSNLSKRWAQRTLSKSFYSTATGAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAE 60 MFSNLSKRWAQRTLSKSFYSTATGAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAE Sbjct: 1 MFSNLSKRWAQRTLSKSFYSTATGAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAE 60 Query: 61 AMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSH 120 AMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSH Sbjct: 61 AMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSH 120 Query: 121 TNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLI 180 TNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLI Sbjct: 121 TNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLI 180 Query: 181 VKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT 240 VKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT Sbjct: 181 VKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT 240 Query: 241 PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKF 300 PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKF Sbjct: 241 PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKF 300 Query: 301 VFNPPKPRK 309 VFNPPKPRK Sbjct: 301 VFNPPKPRK 309 >1KYO-D nrPDB Length = 248 Score = 424 bits (1090), Expect = e-119, Method: Composition-based stats. Identities = 248/248 (100%), Positives = 248/248 (100%) Query: 62 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 121 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT Sbjct: 1 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60 Query: 122 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 181 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV Sbjct: 61 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120 Query: 182 KARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTP 241 KARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTP Sbjct: 121 KARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTP 180 Query: 242 ATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFV 301 ATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFV Sbjct: 181 ATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFV 240 Query: 302 FNPPKPRK 309 FNPPKPRK Sbjct: 241 FNPPKPRK 248 >6FO2-Q nrPDB Length = 325 Score = 405 bits (1040), Expect = e-113, Method: Composition-based stats. Identities = 142/246 (57%), Positives = 186/246 (75%), Gaps = 1/246 (0%) Query: 61 AMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSH 120 A++A++ LH P+Y WSH G + DH SIRRG+QVY++VC++CHS+D VA+R LVGV + Sbjct: 81 AVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCY 140 Query: 121 TNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLI 180 T +E + +AEE E D P+E G RPGKLSDY P PYPN +AARAAN GALPPDLS I Sbjct: 141 TEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYI 200 Query: 181 VKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGT 240 V+ARHGG DY+FSLLTGY EPP GV+L G +NPYFPG +I MA ++++++E++DGT Sbjct: 201 VRARHGGEDYVFSLLTGY-CEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGT 259 Query: 241 PATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKF 300 PAT SQ+AKDV TFL W AEPEHD RKR+GLK ++++ L L +K+ KW+ +K+RK Sbjct: 260 PATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 319 Query: 301 VFNPPK 306 + PPK Sbjct: 320 AYRPPK 325 >3H1H-D nrPDB Length = 241 Score = 402 bits (1032), Expect = e-112, Method: Composition-based stats. Identities = 145/242 (59%), Positives = 184/242 (76%), Gaps = 1/242 (0%) Query: 65 AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEE 124 E LH PA+ WSH GP DH+S+RRG+QVY++VC+ACHS+D VA+R L+GV+HT E Sbjct: 1 GELELHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAE 60 Query: 125 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 184 + +AEE E D PDE G RPGK+SDY P PYPN +AARAAN GALPPDLS IV AR Sbjct: 61 AKALAEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNAR 120 Query: 185 HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATT 244 HGG DY+FSLLTGY D PPAGV + G +YNPYFPG +I MA ++++++EY+DGTPAT Sbjct: 121 HGGEDYVFSLLTGYCD-PPAGVVVREGLHYNPYFPGQAIGMAPPIYNEILEYDDGTPATM 179 Query: 245 SQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNP 304 SQ+AKDV TFL W AEPEHD+RKR+GLK ++I + L L ++K+ KW+ +K+RK + P Sbjct: 180 SQIAKDVCTFLRWAAEPEHDQRKRMGLKMLLISALLTSLLYYMKRHKWSVLKSRKMAYRP 239 Query: 305 PK 306 PK Sbjct: 240 PK 241 >5NMI-D nrPDB Length = 240 Score = 400 bits (1027), Expect = e-112, Method: Composition-based stats. Identities = 140/241 (58%), Positives = 181/241 (75%), Gaps = 1/241 (0%) Query: 66 EHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEV 125 + LH P+Y WSH G + DH SIRRG+QVY++VC++CHS+D VA+R LVGV +T +E Sbjct: 1 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 60 Query: 126 RNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARH 185 + +AEE E D P+E G RPGKLSDY P PYPN +AARAAN GALPPDLS IV+ARH Sbjct: 61 KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 120 Query: 186 GGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTS 245 GG DY+FSLLTGY EPP GV+L G +NPYFPG +I MA ++++++E++DGTPAT S Sbjct: 121 GGEDYVFSLLTGY-CEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMS 179 Query: 246 QMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPP 305 Q+AKDV TFL W AEPEHD RKR+GLK ++++ L L +K+ KW+ +K+RK + PP Sbjct: 180 QVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPP 239 Query: 306 K 306 K Sbjct: 240 K 240 >5XTH-AH nrPDB Length = 241 Score = 397 bits (1021), Expect = e-111, Method: Composition-based stats. Identities = 140/242 (57%), Positives = 181/242 (74%), Gaps = 1/242 (0%) Query: 65 AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEE 124 ++ LH P+Y WSH G + DH SIRRG+QVY++VCA+CHS+D VA+R LVGV +T +E Sbjct: 1 SDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDE 60 Query: 125 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 184 + +A E E D P+E G RPGKL DY P PYPN +AARAAN GALPPDLS IV+AR Sbjct: 61 AKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSYIVRAR 120 Query: 185 HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATT 244 HGG DY+FSLLTGY EPP GV+L G +NPYFPG +IAMA ++ D++E++DGTPAT Sbjct: 121 HGGEDYVFSLLTGY-CEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATM 179 Query: 245 SQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNP 304 SQ+AKDV TFL W +EPEHD RKR+GLK +++++ L L +K+ KW+ +K+RK + P Sbjct: 180 SQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 239 Query: 305 PK 306 PK Sbjct: 240 PK 241 >1ZRT-D nrPDB Length = 258 Score = 320 bits (820), Expect = 4e-88, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 119/266 (44%), Gaps = 45/266 (16%) Query: 69 LHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNM 128 + P +A+S G F +D A +RRG+QVY EVC+ACH + V RTL + + Sbjct: 2 SNVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFV 61 Query: 129 AEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR---- 184 E D ++ + ++R K +D P R + + PDLS++ KAR Sbjct: 62 REYAAGLDTIIDKDSGEERDRKETDMFP--------TRVGD--GMGPDLSVMAKARAGFS 111 Query: 185 -------------HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFP------------ 219 GG +YI++ + G+ + P G YN F Sbjct: 112 GPAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAA 171 Query: 220 ------GGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKT 273 G M L DD V YEDGTPAT QMA+DV+ FL W AEP+ RK++GL Sbjct: 172 GVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVA 231 Query: 274 VIILSSLYLLSIWVKKFKWAGIKTRK 299 +++L L ++ K WA K K Sbjct: 232 MVMLGLLSVMLYLTNKRLWAPYKGHK 257 >5KLI-B nrPDB Length = 272 Score = 310 bits (794), Expect = 5e-85, Method: Composition-based stats. Identities = 100/272 (36%), Positives = 130/272 (47%), Gaps = 55/272 (20%) Query: 68 GLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLV---GVSHTNEE 124 G H +S GPF TFD ++RG QVY EVCAACH + V R+L G ++ Sbjct: 3 GGHVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQ 62 Query: 125 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 184 VR A +F DE + R GK +D+ P +A + A PDLSL+ KAR Sbjct: 63 VRAYATQFTVTDEET----GEDREGKPTDHFP---------HSALENA--PDLSLMAKAR 107 Query: 185 HG-----------------GCDYIFSLLTGYPDEPP--AGVALPPGSNYNPYFPGG---- 221 G G +YI+S+LTG+P+EPP A P G YN F G Sbjct: 108 AGFHGPMGTGISQLFNGIGGPEYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPD 167 Query: 222 --------------SIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERK 267 IAM L DD+VEY DG A+ MA+DV+ FL W AEP+ RK Sbjct: 168 TCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARK 227 Query: 268 RLGLKTVIILSSLYLLSIWVKKFKWAGIKTRK 299 + G V+ L+ L +L K WAG+K +K Sbjct: 228 QAGFTAVMFLTVLSVLLYLTNKRLWAGVKGKK 259 >2YIU-B nrPDB Length = 263 Score = 306 bits (783), Expect = 8e-84, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 129/281 (45%), Gaps = 51/281 (18%) Query: 54 ADSLTAEAMTAAEHG-----LHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLD 108 A TA A A E G H ++S GPF FD ++RG QVY EVC+ACH L Sbjct: 6 APGTTAPAGAAQEAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLR 65 Query: 109 RVAWRTLV---GVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAA 165 V RTL G ++VR A F+ D E+ P+ P + Sbjct: 66 YVPLRTLADEGGPQLPEDQVRAYAANFDITDPETEEDRPR-------------VPTDHFP 112 Query: 166 RAANQGALPPDLSLIVKARHG-----------------GCDYIFSLLTGYPDEP--PAGV 206 + +G + PDLSL+ KAR G G +YI ++LTGY E AG Sbjct: 113 TVSGEG-MGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLTGYDGEEKEEAGA 171 Query: 207 ALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDER 266 L +N F G I MA L DD V YEDGTPAT QMA DV FL W AEP+ +R Sbjct: 172 VL----YHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDR 227 Query: 267 KRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKP 307 K++G +VI L L L K W IK +P KP Sbjct: 228 KQVGFVSVIFLIVLAALLYLTNKKLWQPIK------HPRKP 262 >1QCR-D nrPDB Length = 75 Score = 115 bits (287), Expect = 3e-26, Method: Composition-based stats. Identities = 40/75 (53%), Positives = 57/75 (76%) Query: 232 DMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFK 291 +++E++DGTPAT SQ+AKDV TFL W AEPEHD RKR+GLK ++++ L L +K+ K Sbjct: 1 EVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHK 60 Query: 292 WAGIKTRKFVFNPPK 306 W+ +K+RK + PPK Sbjct: 61 WSVLKSRKLAYRPPK 75 >1F1C-A nrPDB Length = 129 Score = 37.1 bits (84), Expect = 0.009, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 22/128 (17%) Query: 74 YAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFE 133 + + G I++G QV+ CA CH+L GV+ TN +V E Sbjct: 8 FPINAQGDTAVLSLKEIKKGQQVFNAACAQCHAL---------GVTRTNPDVNLSPEALA 58 Query: 134 YDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLS---LIVKARHGGCDY 190 P + L DYI P + + L P L + K R+ D Sbjct: 59 LATPPRDN------IAALVDYIKNPTTYDGFVEISE---LHPSLKSSDIFPKMRNISEDD 109 Query: 191 IFSLLTGY 198 ++++ GY Sbjct: 110 LYNV-AGY 116 >4WYG-A nrPDB Length = 457 Score = 33.6 bits (75), Expect = 0.11, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 24/175 (13%) Query: 52 LYADSLTAEAMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVA 111 L+ D L A+ + PAY+ + + V V + Sbjct: 197 LWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLA---QHAGELAAVVVEPVVQGAGGMRFHD 253 Query: 112 WRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQG 171 R L ++R++ +E DE R G L AA+ Sbjct: 254 PRYL-------HDLRDICRRYEVLLIFDEIATGFGRTGALF--------------AADHA 292 Query: 172 ALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMA 226 + PD+ + KA GG + + L + P F +A A Sbjct: 293 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACA 347 >2YEV-B nrPDB Length = 337 Score = 33.2 bits (74), Expect = 0.13, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 91 RRGYQVYREVCAACHSLDRVAWRTLVGVSH 120 RG QV+++ CAACH + R ++G Sbjct: 237 ERGQQVFQQNCAACHGVARSMPPAVIGPEL 266 >1YIQ-A nrPDB Length = 689 Score = 33.2 bits (74), Expect = 0.14, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 42 AAAGITASTLLYADSLTAEAMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVC 101 A + A YA LT + A+ + P + D ASI G ++Y C Sbjct: 548 GALSLRAGVQPYAQVLTYKLGGTAKLQ-EPAPRPDTPKPPALSNDTASIEAGAKLYDGYC 606 Query: 102 AACHSLDRVA 111 + CH + V+ Sbjct: 607 SQCHGIHAVS 616 >4IXR-V nrPDB Length = 163 Score = 33.2 bits (74), Expect = 0.15, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 16/140 (11%) Query: 64 AAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACH---------SLDRVAWRT 114 AAE + G T G ++++ CA+CH SLD + T Sbjct: 26 AAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLD-LRTET 84 Query: 115 LVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLS----DYIPGPYPNEQAARAANQ 170 L + + + + + + + G + S D P + A Sbjct: 85 LALATPPRDNIEGLVDYMK--NPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIA 142 Query: 171 GALPPDLSLIVKARHGGCDY 190 G + + ++ GG Y Sbjct: 143 GHILVEPKILGDKWGGGKVY 162 >1KV9-A nrPDB Length = 668 Score = 32.8 bits (73), Expect = 0.21, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 22/47 (46%) Query: 89 SIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYD 135 ++ G Q+Y + C+ CH + ++ + + +++ R ++ Sbjct: 579 QVQAGKQLYGQFCSVCHGMGTISGGLIPDLRQSSDATREHFQQIVLQ 625 >1COR-A nrPDB Length = 82 Score = 32.1 bits (71), Expect = 0.31, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Query: 101 CAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYP 160 CAACHS+D LVG + + +A ++ D + + G + P P P Sbjct: 12 CAACHSID----AKLVGPAF-----KEVAAKYAGQDGAADLLAGHIKNGSQGVWGPIPMP 62 >6NAU-A nrPDB Length = 334 Score = 31.7 bits (70), Expect = 0.39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 35/123 (28%), Gaps = 20/123 (16%) Query: 132 FEYDDEPDEQGNPKKRPGKLSDYIP----------GPYPNEQAARAANQGALPPDLSLIV 181 + D P + P K Y+ P+ A A + ALP + I Sbjct: 32 VQVVDAPGQVQPMVVSPNKEFLYVGVRPEFRVLAYRITPDNGALTFAGEAALPGSPTHIS 91 Query: 182 KARHG----------GCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFD 231 RHG GC + L G P E V G + P L Sbjct: 92 TDRHGRFVFSASYNQGCVSVTPLHDGLPGETITVVEGLEGCHSANISPDNRTLWVPALKQ 151 Query: 232 DMV 234 D + Sbjct: 152 DRI 154 >3JRW-A nrPDB Length = 587 Score = 31.7 bits (70), Expect = 0.41, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 24 GAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAEAMTAAEHGLHAPAYAWSHNGPFE 83 G AS++ KL + L GVA G + + A + A L P WS +G Sbjct: 148 GHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQT--LQVPTLPWSGSGLTV 205 Query: 84 TFDHASIRRGYQV 96 + +++G ++ Sbjct: 206 EWTEDDLQQGKRI 218 >3A0H-V nrPDB Length = 137 Score = 31.3 bits (69), Expect = 0.51, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 16/139 (11%) Query: 65 AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACH---------SLDRVAWRTL 115 AE + G T G ++++ CA+CH SLD + TL Sbjct: 1 AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLD-LRTETL 59 Query: 116 VGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLS----DYIPGPYPNEQAARAANQG 171 + + + + + + + G + S D P + A G Sbjct: 60 ALATPPRDNIEGLVDYMK--NPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAG 117 Query: 172 ALPPDLSLIVKARHGGCDY 190 + + ++ GG Y Sbjct: 118 HILVEPKILGDKWGGGKVY 136 >2CHP-A nrPDB Length = 153 Score = 30.9 bits (68), Expect = 0.78, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%) Query: 103 ACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDY 154 A ++D +A R L V+ E D +E + ++DY Sbjct: 57 AAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDY 108 >5ZFR-A nrPDB Length = 582 Score = 30.5 bits (67), Expect = 0.94, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 14/31 (45%) Query: 98 REVCAACHSLDRVAWRTLVGVSHTNEEVRNM 128 R VC+ C +++ + + L+ EE Sbjct: 469 RRVCSECKAVEEIPIQALIDAGVPPEEAPEY 499 >2WNE-A nrPDB Length = 298 Score = 29.7 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 29/94 (30%), Gaps = 12/94 (12%) Query: 140 EQGNPKKRPGKLSDYIPG---PYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLT 196 E G D I G PN A+P ++ A + CD Sbjct: 104 ETDEGDWPNGGSVDIIEGVNDQSPNAMTLHTGANCAMPASRTMTGHATNNNCD------V 157 Query: 197 GYPDEPPAGVALPPGSNYNPYFP---GGSIAMAR 227 GV P ++Y P F GG AM R Sbjct: 158 NTDGNTGCGVQAPTANSYGPSFNANGGGWYAMER 191 >4GF4-A nrPDB Length = 436 Score = 29.0 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 120 HTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSL 179 H N++V+ AE ++ NP P + ++Y Y N + P+L Sbjct: 356 HVNDDVKKRAELLNAQSGINDYDNPGFVPLQRTEYNAELY---YGFHVTNWLTVRPNLQY 412 Query: 180 IVKARHGGCDYIFSLLT 196 I GG D + + L Sbjct: 413 IKSP--GGVDEVDNALV 427 >2CA3-B nrPDB Length = 81 Score = 27.4 bits (59), Expect = 8.9, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 14/20 (70%) Query: 91 RRGYQVYREVCAACHSLDRV 110 + G++ + CAACHS+D + Sbjct: 19 QPGFEAAQNNCAACHSVDYI 38 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.303 0.125 0.344 Lambda K H 0.267 0.0392 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,970,289 Number of Sequences: 36641 Number of extensions: 479585 Number of successful extensions: 1424 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 1357 Number of HSP's gapped (non-prelim): 55 length of query: 309 length of database: 10,336,785 effective HSP length: 97 effective length of query: 212 effective length of database: 6,782,608 effective search space: 1437912896 effective search space used: 1437912896 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 59 (27.4 bits)