BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P07108
         (87 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2FJ9-A nrPDB                                                          177   7e-46
1HB8-A nrPDB                                                          167   9e-43
3EPY-A nrPDB                                                          110   2e-25
3FP5-A nrPDB                                                           99   3e-22
5H3G-A nrPDB                                                           84   9e-18
1ST7-A nrPDB                                                           84   2e-17
2WH5-A nrPDB                                                           77   2e-15
2COP-A nrPDB                                                           74   2e-14
5H3I-A nrPDB                                                           72   5e-14
2CQU-A nrPDB                                                           72   5e-14
2LBB-A nrPDB                                                           71   8e-14
3FLV-A nrPDB                                                           67   1e-12
5IJM-A nrPDB                                                           67   2e-12
1HBK-A nrPDB                                                           49   5e-07
4MKI-B nrPDB                                                           28   0.91 
4Y1B-A nrPDB                                                           27   2.3  
3UE1-A nrPDB                                                           25   5.6  
5AWQ-A nrPDB                                                           25   7.5  
2I1J-A nrPDB                                                           25   8.8  

>2FJ9-A nrPDB
          Length = 86

 Score =  177 bits (450), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 2  SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 61
          SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE
Sbjct: 1  SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 60

Query: 62 LKGTSKEDAMKAYINKVEELKKKYGI 87
          LKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 61 LKGTSKEDAMKAYINKVEELKKKYGI 86


>1HB8-A nrPDB
          Length = 86

 Score =  167 bits (423), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 80/86 (93%), Positives = 84/86 (97%)

Query: 2  SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 61
          SQAEF+KAAEEV+HLKTKP+DEEMLFIY HYKQATVGDINTERPGMLDF GKAKWDAWNE
Sbjct: 1  SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNE 60

Query: 62 LKGTSKEDAMKAYINKVEELKKKYGI 87
          LKGTSKEDAMKAYI+KVEELKKKYGI
Sbjct: 61 LKGTSKEDAMKAYIDKVEELKKKYGI 86


>3EPY-A nrPDB
          Length = 89

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 64/85 (75%)

Query: 3  QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNEL 62
          QA+F++AAE+VR LK +P D E+  +YG YKQA VGDIN   PGMLD  GKAKW+AWN  
Sbjct: 5  QADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLK 64

Query: 63 KGTSKEDAMKAYINKVEELKKKYGI 87
          KG S EDA  AYI+K +EL +KYGI
Sbjct: 65 KGLSTEDATSAYISKAKELIEKYGI 89


>3FP5-A nrPDB
          Length = 106

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 65/88 (73%), Gaps = 4/88 (4%)

Query: 1  MSQAEFEKAAEEVRHLK----TKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKW 56
          MS+A+F+KA E V+ L      KP+ +E L+ Y ++KQATVGD+N  RPG++DFTGKAKW
Sbjct: 3  MSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKW 62

Query: 57 DAWNELKGTSKEDAMKAYINKVEELKKK 84
          DAW  ++GTSKE A + Y+ K+ E+ KK
Sbjct: 63 DAWKSVEGTSKEVAYQKYVEKLLEILKK 90


>5H3G-A nrPDB
          Length = 94

 Score = 84.3 bits (207), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query: 3  QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNEL 62
          Q +FE+ AE+ + L    S+E  L +YG YKQATVGD+NT RPG+     +AKWDAW  +
Sbjct: 7  QEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTARPGIFAQRDRAKWDAWKAV 66

Query: 63 KGTSKEDAMKAYINKVEE 80
          +G SKE+AM  YI KV++
Sbjct: 67 EGKSKEEAMSDYITKVKQ 84


>1ST7-A nrPDB
          Length = 86

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 55/81 (67%)

Query: 6  FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 65
          FE+ A+ V  L TKPS +E+L +Y  YKQATVGD + E+PG+ +   + KW+AW  LKG 
Sbjct: 5  FEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGK 64

Query: 66 SKEDAMKAYINKVEELKKKYG 86
          S+EDA K YI  V++L  KY 
Sbjct: 65 SQEDAEKEYIALVDQLIAKYS 85


>2WH5-A nrPDB
          Length = 106

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 2  SQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWD 57
           Q +F+ A   +++L      +PS EEML  Y +YKQAT+G     RPG  D  G+ KWD
Sbjct: 8  CQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWD 67

Query: 58 AWNELKGTSKEDAMKAYINKVEELKKK 84
          AWN L   S+E+AM AYI +++ + +K
Sbjct: 68 AWNSLGKMSREEAMSAYITEMKLVAQK 94


>2COP-A nrPDB
          Length = 109

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query: 6  FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 65
          FEKAA  ++ L    S E++L++Y  YKQ  VG+ NT +P   DF GK KW+AW  L  +
Sbjct: 12 FEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDS 71

Query: 66 SKEDAMKAYINKVEEL 81
          S   AM+ YI  V++L
Sbjct: 72 SPSQAMQEYIAVVKKL 87


>5H3I-A nrPDB
          Length = 95

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 21 SDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEE 80
          S+E+ L +YG YKQATVG + T RPG+ +   + KWDAW  ++G SKE+AM  YI KV++
Sbjct: 26 SNEDKLLLYGLYKQATVGPVTTGRPGIFNLKDRYKWDAWKAVEGKSKEEAMADYITKVKQ 85

Query: 81 L 81
          L
Sbjct: 86 L 86


>2CQU-A nrPDB
          Length = 116

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%)

Query: 2  SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 61
          SQ +FE +  +V+ LK  P +E  L +Y  YKQAT G  N  +PG+ D   KAKWDAWN 
Sbjct: 16 SQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNA 75

Query: 62 LKGTSKEDAMKAYIN 76
          L    KE A + Y++
Sbjct: 76 LGSLPKEAARQNYVD 90


>2LBB-A nrPDB
          Length = 96

 Score = 71.2 bits (173), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 1  MSQAEFEKAAEEVRHLKTK-PSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAW 59
          MS  +F+ A + V +  T   S+++ L  Y +YKQATVGD N  +PGML    K KW+AW
Sbjct: 9  MSADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAW 68

Query: 60 NELKGTSKEDAMKAYINKVEEL 81
          N L+G S E A +AY+  ++ L
Sbjct: 69 NALRGMSTESAKEAYVKLLDTL 90


>3FLV-A nrPDB
          Length = 119

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 7/87 (8%)

Query: 1   MSQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKW 56
           M +  FE A + ++ L      +P++E ML  Y  YKQAT G     RPG  D  G+ KW
Sbjct: 23  MHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKW 82

Query: 57  DAWNELKGTSKEDAMKAYINKVEELKK 83
           DAW+ L   +KE+AM AY   VEE+KK
Sbjct: 83  DAWSSLGDMTKEEAMIAY---VEEMKK 106


>5IJM-A nrPDB
          Length = 106

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 1  MSQAEFEKAAEEVRHL-KTKP---SDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKW 56
          MS A+FE A   VR L K  P    +   L  Y  YKQAT GD+   +P  +    +AKW
Sbjct: 4  MSAADFEAAVAYVRSLPKEGPVQLDNAAKLQFYSLYKQATEGDVTGSQPWAVQVEARAKW 63

Query: 57 DAWNELKGTSKEDAMKAYINKVEELKKKYGI 87
          DAWN  KG   EDA  AY+ ++  L +  GI
Sbjct: 64 DAWNSCKGMKSEDAKAAYVRRLLTLLRSQGI 94


>1HBK-A nrPDB
          Length = 89

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 22 DEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEEL 81
          +E  L +Y +YKQ+T+G+ N + P    +  + K++AW  ++  ++EDA K Y++ V E+
Sbjct: 24 NELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEI 83


>4MKI-B nrPDB
          Length = 298

 Score = 28.1 bits (61), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 23 EEMLFIYGH---YKQATVGDIN-----TERPGMLDFTGKAKWDAWNELKGTSKEDAMKAY 74
          E + FIY     Y    + DIN      E  G++  TG  K     +L G  K    K Y
Sbjct: 10 ENVSFIYNEGTPYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIY 69

Query: 75 INKVEELKKKYGI 87
          IN ++   KK  +
Sbjct: 70 INGIDITDKKVSL 82


>4Y1B-A nrPDB
          Length = 425

 Score = 26.6 bits (57), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 44  RPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKY 85
           R G   +  + ++D W  L  T+ E+AMK +++      +++
Sbjct: 264 RLGAKGWIDRREFDHWGRLPDTTDEEAMKQWLDGARAFGRRF 305


>3UE1-A nrPDB
          Length = 731

 Score = 25.4 bits (54), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 66  SKEDAMKAYINKVEELKKKYGI 87
           SKED +  Y+NK+   K  YGI
Sbjct: 128 SKEDILSLYVNKIFLGKNAYGI 149


>5AWQ-A nrPDB
          Length = 610

 Score = 25.0 bits (53), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 45  PGMLDFTGKAKWDAWNELKGTSKEDA 70
           P  + F G A WD W    GT   DA
Sbjct: 559 PVHVSFPGLATWDTWGVADGTITLDA 584


>2I1J-A nrPDB
          Length = 575

 Score = 24.6 bits (52), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 59  WNELKGTSKEDAMKAYINKVEELKKKYGI 87
           W E +G  +EDAM  Y+   ++L + YG+
Sbjct: 176 WQEHRGMLREDAMMEYLKIAQDL-EMYGV 203


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2FJ9-A nrPDB                                                          122   4e-29
2WH5-A nrPDB                                                          117   9e-28
1HB8-A nrPDB                                                          117   1e-27
3FLV-A nrPDB                                                          114   1e-26
3EPY-A nrPDB                                                          111   6e-26
2CQU-A nrPDB                                                          108   6e-25
5IJM-A nrPDB                                                          106   2e-24
2LBB-A nrPDB                                                          104   1e-23
3FP5-A nrPDB                                                          102   4e-23
5H3G-A nrPDB                                                          101   9e-23
2COP-A nrPDB                                                          100   1e-22
1ST7-A nrPDB                                                           98   8e-22
5H3I-A nrPDB                                                           97   2e-21
1HBK-A nrPDB                                                           89   6e-19

Sequences not found previously or not previously below threshold:

3PZD-A nrPDB                                                           31   0.15 
5T2K-A nrPDB                                                           29   0.48 
2OC2-A nrPDB                                                           28   0.83 
4Y1B-A nrPDB                                                           28   0.95 
6CC2-A nrPDB                                                           27   1.5  
5ZVW-A nrPDB                                                           27   1.7  
5EJY-A nrPDB                                                           27   2.1  
3QPB-A nrPDB                                                           26   3.0  
1H2T-C nrPDB                                                           26   3.0  
2I1J-A nrPDB                                                           26   3.6  
3EPJ-A nrPDB                                                           26   4.1  
2JUF-A nrPDB                                                           26   4.3  
4M57-A nrPDB                                                           26   4.6  
5XM3-B nrPDB                                                           25   9.1  


CONVERGED!
>2FJ9-A nrPDB
          Length = 86

 Score =  122 bits (306), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 2  SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 61
          SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE
Sbjct: 1  SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 60

Query: 62 LKGTSKEDAMKAYINKVEELKKKYGI 87
          LKGTSKEDAMKAYINKVEELKKKYGI
Sbjct: 61 LKGTSKEDAMKAYINKVEELKKKYGI 86


>2WH5-A nrPDB
          Length = 106

 Score =  117 bits (294), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 2  SQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWD 57
           Q +F+ A   +++L      +PS EEML  Y +YKQAT+G     RPG  D  G+ KWD
Sbjct: 8  CQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWD 67

Query: 58 AWNELKGTSKEDAMKAYINKVEELKKK 84
          AWN L   S+E+AM AYI +++ + +K
Sbjct: 68 AWNSLGKMSREEAMSAYITEMKLVAQK 94


>1HB8-A nrPDB
          Length = 86

 Score =  117 bits (292), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/86 (93%), Positives = 84/86 (97%)

Query: 2  SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 61
          SQAEF+KAAEEV+HLKTKP+DEEMLFIY HYKQATVGDINTERPGMLDF GKAKWDAWNE
Sbjct: 1  SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNE 60

Query: 62 LKGTSKEDAMKAYINKVEELKKKYGI 87
          LKGTSKEDAMKAYI+KVEELKKKYGI
Sbjct: 61 LKGTSKEDAMKAYIDKVEELKKKYGI 86


>3FLV-A nrPDB
          Length = 119

 Score =  114 bits (285), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 1   MSQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKW 56
           M +  FE A + ++ L      +P++E ML  Y  YKQAT G     RPG  D  G+ KW
Sbjct: 23  MHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKW 82

Query: 57  DAWNELKGTSKEDAMKAYINKVEELKK 83
           DAW+ L   +KE+AM AY+ +++++ +
Sbjct: 83  DAWSSLGDMTKEEAMIAYVEEMKKIIE 109


>3EPY-A nrPDB
          Length = 89

 Score =  111 bits (278), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/85 (62%), Positives = 64/85 (75%)

Query: 3  QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNEL 62
          QA+F++AAE+VR LK +P D E+  +YG YKQA VGDIN   PGMLD  GKAKW+AWN  
Sbjct: 5  QADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLK 64

Query: 63 KGTSKEDAMKAYINKVEELKKKYGI 87
          KG S EDA  AYI+K +EL +KYGI
Sbjct: 65 KGLSTEDATSAYISKAKELIEKYGI 89


>2CQU-A nrPDB
          Length = 116

 Score =  108 bits (269), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 45/75 (60%)

Query: 2  SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNE 61
          SQ +FE +  +V+ LK  P +E  L +Y  YKQAT G  N  +PG+ D   KAKWDAWN 
Sbjct: 16 SQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNA 75

Query: 62 LKGTSKEDAMKAYIN 76
          L    KE A + Y++
Sbjct: 76 LGSLPKEAARQNYVD 90


>5IJM-A nrPDB
          Length = 106

 Score =  106 bits (264), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 1  MSQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKW 56
          MS A+FE A   VR L      +  +   L  Y  YKQAT GD+   +P  +    +AKW
Sbjct: 4  MSAADFEAAVAYVRSLPKEGPVQLDNAAKLQFYSLYKQATEGDVTGSQPWAVQVEARAKW 63

Query: 57 DAWNELKGTSKEDAMKAYINKVEELKKKYGI 87
          DAWN  KG   EDA  AY+ ++  L +  GI
Sbjct: 64 DAWNSCKGMKSEDAKAAYVRRLLTLLRSQGI 94


>2LBB-A nrPDB
          Length = 96

 Score =  104 bits (259), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 1  MSQAEFEKAAEEVRHLKTK-PSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAW 59
          MS  +F+ A + V +  T   S+++ L  Y +YKQATVGD N  +PGML    K KW+AW
Sbjct: 9  MSADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAW 68

Query: 60 NELKGTSKEDAMKAYINKVEELKKKY 85
          N L+G S E A +AY+  ++ L   +
Sbjct: 69 NALRGMSTESAKEAYVKLLDTLAPSW 94


>3FP5-A nrPDB
          Length = 106

 Score =  102 bits (254), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 65/88 (73%), Gaps = 4/88 (4%)

Query: 1  MSQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKW 56
          MS+A+F+KA E V+ L      KP+ +E L+ Y ++KQATVGD+N  RPG++DFTGKAKW
Sbjct: 3  MSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKW 62

Query: 57 DAWNELKGTSKEDAMKAYINKVEELKKK 84
          DAW  ++GTSKE A + Y+ K+ E+ KK
Sbjct: 63 DAWKSVEGTSKEVAYQKYVEKLLEILKK 90


>5H3G-A nrPDB
          Length = 94

 Score =  101 bits (251), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query: 3  QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNEL 62
          Q +FE+ AE+ + L    S+E  L +YG YKQATVGD+NT RPG+     +AKWDAW  +
Sbjct: 7  QEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTARPGIFAQRDRAKWDAWKAV 66

Query: 63 KGTSKEDAMKAYINKVEE 80
          +G SKE+AM  YI KV++
Sbjct: 67 EGKSKEEAMSDYITKVKQ 84


>2COP-A nrPDB
          Length = 109

 Score =  100 bits (249), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query: 6  FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 65
          FEKAA  ++ L    S E++L++Y  YKQ  VG+ NT +P   DF GK KW+AW  L  +
Sbjct: 12 FEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDS 71

Query: 66 SKEDAMKAYINKVEEL 81
          S   AM+ YI  V++L
Sbjct: 72 SPSQAMQEYIAVVKKL 87


>1ST7-A nrPDB
          Length = 86

 Score = 98.2 bits (243), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/81 (50%), Positives = 55/81 (67%)

Query: 6  FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 65
          FE+ A+ V  L TKPS +E+L +Y  YKQATVGD + E+PG+ +   + KW+AW  LKG 
Sbjct: 5  FEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGK 64

Query: 66 SKEDAMKAYINKVEELKKKYG 86
          S+EDA K YI  V++L  KY 
Sbjct: 65 SQEDAEKEYIALVDQLIAKYS 85


>5H3I-A nrPDB
          Length = 95

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query: 15 HLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAY 74
           L    S+E+ L +YG YKQATVG + T RPG+ +   + KWDAW  ++G SKE+AM  Y
Sbjct: 20 TLPDTISNEDKLLLYGLYKQATVGPVTTGRPGIFNLKDRYKWDAWKAVEGKSKEEAMADY 79

Query: 75 INKVEELKKK 84
          I KV++L ++
Sbjct: 80 ITKVKQLLEE 89


>1HBK-A nrPDB
          Length = 89

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 6  FEKAAEEVRHLKTKPS--DEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELK 63
          FE+    +  L    +  +E  L +Y +YKQ+T+G+ N + P    +  + K++AW  ++
Sbjct: 6  FEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVE 65

Query: 64 GTSKEDAMKAYINKVEEL 81
            ++EDA K Y++ V E+
Sbjct: 66 NLNREDAQKRYVDIVSEI 83


>3PZD-A nrPDB
          Length = 511

 Score = 30.8 bits (68), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 57  DAWNELKGTSKEDAMKAYINKVEE 80
           D W + +G ++E AM  Y+  ++E
Sbjct: 390 DKWRKFQGMNQEQAMAKYMALIKE 413


>5T2K-A nrPDB
          Length = 248

 Score = 28.9 bits (63), Expect = 0.48,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 56 WDAWNELKGTSKEDAMKAYINKVEE 80
          W AW  L    +E A+  ++  V++
Sbjct: 22 WSAWKTLPNEEREAAISEFLALVDQ 46


>2OC2-A nrPDB
          Length = 591

 Score = 28.1 bits (61), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 5   EFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATV----GDINTERPGMLDFTGKAK----- 55
           + E+AA   + L+    ++ +L +   Y  ATV    G      P + +    ++     
Sbjct: 85  DLERAALPAQELEEY--NKILLDMETTYSVATVCHPNGSCLQLEPDLTNVMATSRKYEDL 142

Query: 56  ---WDAWNELKGTSKEDAMKAYINKVEELKKKYG 86
              W+ W +  G +       Y+  + +  +  G
Sbjct: 143 LWAWEGWRDKAGRAILQFYPKYVELINQAARLNG 176


>4Y1B-A nrPDB
          Length = 425

 Score = 28.1 bits (61), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 44  RPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKY 85
           R G   +  + ++D W  L  T+ E+AMK +++      +++
Sbjct: 264 RLGAKGWIDRREFDHWGRLPDTTDEEAMKQWLDGARAFGRRF 305


>6CC2-A nrPDB
          Length = 543

 Score = 27.3 bits (59), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 43  ERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKY 85
            + G+    GK K+D      G     A ++Y     E+K K+
Sbjct: 279 SKLGIWTSRGKEKFDVLIADMGIPLSQAQQSYKTMSLEMKNKF 321


>5ZVW-A nrPDB
          Length = 378

 Score = 27.3 bits (59), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 1   MSQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYK 33
           ++Q   E+A E +  L ++  DE  L  Y +YK
Sbjct: 298 INQGNIEEATEILDELSSRDQDENELGFYYYYK 330


>5EJY-A nrPDB
          Length = 500

 Score = 26.9 bits (58), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 41  NTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEE 80
           + E+    DF  K K       KG S EDA K  +  +E+
Sbjct: 369 DIEKNRFDDFINKYK-----SHKGLSPEDAKKQMVQLLEK 403


>3QPB-A nrPDB
          Length = 282

 Score = 26.2 bits (56), Expect = 3.0,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 55  KWDAWNELKGTSKE 68
           KW+AW  L   + E
Sbjct: 206 KWEAWKRLGTKASE 219


>1H2T-C nrPDB
          Length = 723

 Score = 26.2 bits (56), Expect = 3.0,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 49  DFTGKAKWDAWNELKGTSKEDAMKAYINKVEE 80
           +F  +  W+ W++      E     ++ +V E
Sbjct: 404 NFQFRWSWEDWSDCLSQDPESPKPKFVREVLE 435


>2I1J-A nrPDB
          Length = 575

 Score = 26.2 bits (56), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 53  KAKWDA-----WNELKGTSKEDAMKAYINKVEELKKKYGI 87
           + +W+      W E +G  +EDAM  Y+   ++L + YG+
Sbjct: 165 REEWEQSITNWWQEHRGMLREDAMMEYLKIAQDL-EMYGV 203


>3EPJ-A nrPDB
          Length = 409

 Score = 25.8 bits (55), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 6   FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGT 65
           F++  + V  +  + + +E+  +Y +Y Q        E  G+    G  ++  W   K  
Sbjct: 202 FQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCEN-GVWQVIGFKEFLPWLTGKTD 260

Query: 66  SKEDAMKAYINKVEELKKKYG 86
                ++  I +++   ++Y 
Sbjct: 261 DNTVKLEDCIERMKTRTRQYA 281


>2JUF-A nrPDB
          Length = 105

 Score = 25.8 bits (55), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 11 EEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPG------MLDFTGKAKWDAWNELKG 64
          E V+          ML  Y        G+      G          TG+  W  W+ L+ 
Sbjct: 16 EYVQQTLQPGMRVRMLDDYEEISAGDEGEFRQSNNGIPPVQVFWQSTGRTYWVHWHMLEI 75

Query: 65 TSKEDAMKA 73
             E+A + 
Sbjct: 76 LGPEEATED 84


>4M57-A nrPDB
          Length = 726

 Score = 25.8 bits (55), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 59  WNELKGTSKEDAMKAYINKVEELKKKYGI 87
           WN +   S +  M+ Y+ +V E  +  G+
Sbjct: 363 WNTMLAVSGKRGMEDYVTRVLEGMRSSGV 391


>5XM3-B nrPDB
          Length = 90

 Score = 24.6 bits (52), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 29 YGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDA 70
          Y   K    GD    +PG  D    +K+D  +  K  +K+DA
Sbjct: 25 YDGTKCKAAGDCWEAKPGFPDKIKGSKYDPKHSEKELNKQDA 66


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.134    0.384 

Lambda     K      H
   0.267   0.0409    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,435,261
Number of Sequences: 36641
Number of extensions: 116595
Number of successful extensions: 302
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 58
length of query: 87
length of database: 10,336,785
effective HSP length: 56
effective length of query: 31
effective length of database: 8,284,889
effective search space: 256831559
effective search space used: 256831559
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)