BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P07102 (432 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1DKL-A nrPDB 841 0.0 1NT4-A nrPDB 201 4e-52 2WNI-A nrPDB 121 7e-28 1ND5-A nrPDB 32 0.56 1YXO-A nrPDB 30 2.2 6GC1-A nrPDB 30 2.7 1GY8-A nrPDB 29 4.0 4XWH-A nrPDB 28 6.8 >1DKL-A nrPDB Length = 410 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/410 (100%), Positives = 410/410 (100%) Query: 23 QSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGH 82 QSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGH Sbjct: 1 QSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGH 60 Query: 83 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSS 142 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSS Sbjct: 61 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSS 120 Query: 143 PDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLK 202 PDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLK Sbjct: 121 PDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLK 180 Query: 203 REKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDS 262 REKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDS Sbjct: 181 REKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDS 240 Query: 263 HQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFI 322 HQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFI Sbjct: 241 HQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFI 300 Query: 323 AGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM 382 AGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM Sbjct: 301 AGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM 360 Query: 383 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL 432 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL Sbjct: 361 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL 410 >1NT4-A nrPDB Length = 391 Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 130/411 (31%), Positives = 204/411 (49%), Gaps = 30/411 (7%) Query: 23 QSEPE-LKLESVVIVSRHGVRAP-TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYL 80 Q+ PE +L+ V+++SR +RAP +++ TP+ WP W V G LT +GG L Y+ Sbjct: 1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM 60 Query: 81 GHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADT 140 GHY R+ L G++ CP V A+ +RT T + F G P C I VH Q Sbjct: 61 GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 120 Query: 141 SSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLC 200 + DP FNP+ T D+A ++ ++ ++ +++ LE+++N+ S C Sbjct: 121 GTMDPTFNPVITD----DSAAFSEQAVAAMEKELSKL--QLTDSYQLLEKIVNYKDSPAC 174 Query: 201 LKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMP--EPGWGR 258 K+ + CSL + ++G + + + L + F LQ +G P + WG Sbjct: 175 ----KEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGE 230 Query: 259 ITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTS 318 I QW L L N L +PEVAR+ A PL+ I AL VT TS Sbjct: 231 IKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKAL-----------VTDRTS 279 Query: 319 ---VLFIAGHDTNLANLGGALELN-WTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSL 374 + + GHD+N+A+L AL+ + L Q + TP GG++VF+RW N +++ Sbjct: 280 APKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEY 339 Query: 375 VFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEA 425 V+Q+ +Q+R+ L+L P V L L+GC +A G C + F ++NEA Sbjct: 340 VYQSAEQLRNADALTLQAPAQRVTLELSGC-PIDADGFCPMDKFDSVLNEA 389 >2WNI-A nrPDB Length = 418 Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 103/414 (24%), Positives = 168/414 (40%), Gaps = 32/414 (7%) Query: 27 ELKLESVVIVSRHGVRAPTKAT-QLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQR 85 + +LE VV +SR G+R PT + ++ T W W G LT G + G + Sbjct: 13 DWQLEKVVELSRAGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEG 72 Query: 86 QRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDP 145 Q GLL + GCP + + + A +RTR T +A G P C + +H DP Sbjct: 73 QHYRQLGLL-QAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYA--NGDADP 129 Query: 146 LFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREK 205 LF K Q D A A+ +AG D RQ L + + +C + Sbjct: 130 LFQTDKFAATQTDPARQLAAVKEKAG----DLAQRRQA----LAPTIQLLKQAVC----Q 177 Query: 206 QDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMP--EPGWGRITDSH 263 D+ C + P ++ S + +S+ + + E L ++ +P + WG+I + Sbjct: 178 ADKPCPIFDT-PWRVEQSKSGKTTISGLSVMANMVETLRLGWSENLPLSQLAWGKIAQAS 236 Query: 264 QWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIA 323 Q LL L + L A+ R + LL+ + + P + L + Sbjct: 237 QITALLPLLTENYDLSNDVLYTAQKRGSVLLNAMLDGVKPEASPNVRW--------LLLV 288 Query: 324 GHDTNLANLGGALELNWTLPGQP-DNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM 382 HDTN+A + + +W LPG N PPG LV ERWR ++++V Q L + Sbjct: 289 AHDTNIAMVRTLMNFSWQLPGYSRGNIPPGSSLVLERWRDAKSGERYLRVYFQAQGLDDL 348 Query: 383 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMC----SLAGFTQIVNEARIPACSL 432 R P + GC + + +C ++ Q ++ PA ++ Sbjct: 349 RRLQTPDAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRIDRPSAPAVAM 402 >1ND5-A nrPDB Length = 354 Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 29 KLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQR 87 +L+ V +V RHG R+P P +WP G LT G E LG Y R+R Sbjct: 2 ELKFVTLVFRHGDRSPIDTF----PTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKR 56 >1YXO-A nrPDB Length = 328 Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 28/89 (31%) Query: 51 MQDVTPDAWPTWPVKLG----WLTP-----RGGEL----IAYL-------------GHYQ 84 ++DV+P AWP P K G W TP R G+L AY+ GH+ Sbjct: 54 LKDVSPAAWPERPAKAGQLYVWDTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFA 113 Query: 85 RQRL--VADGLLAKKGCPQSGQVAIIADV 111 V G++ + G P SG +AD+ Sbjct: 114 GMITAPVHKGVINEAGIPFSGHTEFLADL 142 >6GC1-A nrPDB Length = 579 Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 62/174 (35%), Gaps = 42/174 (24%) Query: 11 LLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPT---KATQLMQDVTPDAWPTWPVKLG 67 LLI + F + ++S V+ R+ + P L Q++ WPT + Sbjct: 120 LLIIGVHSAKFPNEKVLDNIKSAVL--RYNITHPMVNDADASLWQELEVSCWPTLVI--- 174 Query: 68 WLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLA 127 L PRG L + +G + +L +A K GQ+ Sbjct: 175 -LGPRGNMLFSLIGEGHKDKLFLYTSIALKYYKDRGQIR--------------------- 212 Query: 128 PDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHR 181 D I + D+ P PL P K V Q VTD ++ IAD HR Sbjct: 213 -DNKIGIKLYKDSLPPSPLLFPGKVTVDQ-----VTDRLV------IADTGHHR 254 >1GY8-A nrPDB Length = 397 Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%) Query: 126 LAPDCAITVHTQADTSSPDPLFN---PLKTGVCQLDNANVTD 164 +APD +T+H A T P+F P G C D +V D Sbjct: 236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCD 277 >4XWH-A nrPDB Length = 720 Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 7/78 (8%) Query: 233 VSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLL--SLHNAQFYLLQRTPEVARSRA 290 V LA LT+ + + G WGR+ + H W+ L S H Q YL R + RS Sbjct: 155 VYLALGLTQAEINEFFTGPAFLAWGRMGNLHTWDGPLPPSWHIKQLYLQHRVLDQMRSFG 214 Query: 291 -TPLLDLIKTALTPHPPQ 307 TP+L A H P+ Sbjct: 215 MTPVL----PAFAGHVPE 228 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1DKL-A nrPDB 604 e-173 1NT4-A nrPDB 528 e-150 2WNI-A nrPDB 500 e-142 Sequences not found previously or not previously below threshold: 1RPA-A nrPDB 60 2e-09 1ND5-A nrPDB 60 2e-09 5CDH-A nrPDB 48 8e-06 1SK9-A nrPDB 38 0.009 4TXA-A nrPDB 35 0.072 2DE3-A nrPDB 32 0.46 4KPS-B nrPDB 32 0.49 4MQB-A nrPDB 30 1.7 1BII-A nrPDB 29 2.8 5YSW-A nrPDB 29 3.2 >1DKL-A nrPDB Length = 410 Score = 604 bits (1558), Expect = e-173, Method: Composition-based stats. Identities = 410/410 (100%), Positives = 410/410 (100%) Query: 23 QSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGH 82 QSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGH Sbjct: 1 QSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGH 60 Query: 83 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSS 142 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSS Sbjct: 61 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSS 120 Query: 143 PDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLK 202 PDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLK Sbjct: 121 PDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLK 180 Query: 203 REKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDS 262 REKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDS Sbjct: 181 REKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDS 240 Query: 263 HQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFI 322 HQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFI Sbjct: 241 HQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFI 300 Query: 323 AGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM 382 AGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM Sbjct: 301 AGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM 360 Query: 383 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL 432 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL Sbjct: 361 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL 410 >1NT4-A nrPDB Length = 391 Score = 528 bits (1359), Expect = e-150, Method: Composition-based stats. Identities = 130/411 (31%), Positives = 204/411 (49%), Gaps = 30/411 (7%) Query: 23 QSEPE-LKLESVVIVSRHGVRAP-TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYL 80 Q+ PE +L+ V+++SR +RAP +++ TP+ WP W V G LT +GG L Y+ Sbjct: 1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYM 60 Query: 81 GHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADT 140 GHY R+ L G++ CP V A+ +RT T + F G P C I VH Q Sbjct: 61 GHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 120 Query: 141 SSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLC 200 + DP FNP+ T D+A ++ ++ ++ +++ LE+++N+ S C Sbjct: 121 GTMDPTFNPVITD----DSAAFSEQAVAAMEKELSKL--QLTDSYQLLEKIVNYKDSPAC 174 Query: 201 LKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMP--EPGWGR 258 K+ + CSL + ++G + + + L + F LQ +G P + WG Sbjct: 175 ----KEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGE 230 Query: 259 ITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTS 318 I QW L L N L +PEVAR+ A PL+ I AL VT TS Sbjct: 231 IKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKAL-----------VTDRTS 279 Query: 319 ---VLFIAGHDTNLANLGGALELN-WTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSL 374 + + GHD+N+A+L AL+ + L Q + TP GG++VF+RW N +++ Sbjct: 280 APKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEY 339 Query: 375 VFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEA 425 V+Q+ +Q+R+ L+L P V L L+GC +A G C + F ++NEA Sbjct: 340 VYQSAEQLRNADALTLQAPAQRVTLELSGC-PIDADGFCPMDKFDSVLNEA 389 >2WNI-A nrPDB Length = 418 Score = 500 bits (1287), Expect = e-142, Method: Composition-based stats. Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 32/414 (7%) Query: 27 ELKLESVVIVSRHGVRAPTKAT-QLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQR 85 + +LE VV +SR G+R PT + ++ T W W G LT G + G + Sbjct: 13 DWQLEKVVELSRAGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEG 72 Query: 86 QRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDP 145 Q GLL + GCP + + + A +RTR T +A G P C + +H DP Sbjct: 73 QHYRQLGLL-QAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYA--NGDADP 129 Query: 146 LFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREK 205 LF K Q D A A+ +AG D RQ L + + +C + Sbjct: 130 LFQTDKFAATQTDPARQLAAVKEKAG----DLAQRRQA----LAPTIQLLKQAVC----Q 177 Query: 206 QDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMP--EPGWGRITDSH 263 D+ C + P ++ S + +S+ + + E L ++ +P + WG+I + Sbjct: 178 ADKPCPIFDT-PWRVEQSKSGKTTISGLSVMANMVETLRLGWSENLPLSQLAWGKIAQAS 236 Query: 264 QWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIA 323 Q LL L + L A+ R + LL+ + + P + L + Sbjct: 237 QITALLPLLTENYDLSNDVLYTAQKRGSVLLNAMLDGVKPEASPNVRW--------LLLV 288 Query: 324 GHDTNLANLGGALELNWTLPGQP-DNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM 382 HDTN+A + + +W LPG N PPG LV ERWR ++++V Q L + Sbjct: 289 AHDTNIAMVRTLMNFSWQLPGYSRGNIPPGSSLVLERWRDAKSGERYLRVYFQAQGLDDL 348 Query: 383 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCS----LAGFTQIVNEARIPACSL 432 R P + GC + + +C + Q ++ PA ++ Sbjct: 349 RRLQTPDAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRIDRPSAPAVAM 402 >1RPA-A nrPDB Length = 342 Score = 60.2 bits (144), Expect = 2e-09, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 132/405 (32%), Gaps = 78/405 (19%) Query: 29 KLESVVIVSRHGVRAPTKATQLMQDVTPDAWPT--WPVKLGWLTPRGGELIAYLGHYQRQ 86 +L+ V +V RHG R P ++ D WP G LT G LG Y R+ Sbjct: 2 ELKFVTLVFRHGDRGP------IETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRR 55 Query: 87 RLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDP- 145 R + QV I + +RT + A L P S +P Sbjct: 56 RYGRF----LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFP--------PEGNSIWNPR 103 Query: 146 -LFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKRE 204 L+ P+ +S + + F+EL+ +S LKR Sbjct: 104 LLWQPIPV------------HTVSLSEDRLLYLPFRDCPRFQELKS--ETLKSEEFLKRL 149 Query: 205 KQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQ 264 + + S LPS ++ + S L + + P W + Sbjct: 150 QPYK--SFIDTLPSLSGFEDQDL-----FEIWSRLYDPLYCESVHNFTLPTWATEDAMTK 202 Query: 265 WNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAG 324 L L Y + + E +R + L++ I + ++A ++ + Sbjct: 203 LKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKA------RKLIMYSA 256 Query: 325 HDTNLANLGGALELNWTLPGQPDNTPPGGEL-VFERWRRLSDNSQWIQVSLVFQTLQQMR 383 HDT ++ L AL++ PP + E ++ + ++++ Sbjct: 257 HDTTVSGLQMALDV------YNGLLPPYASCHIMELYQD--NGGHFVEMYY--------- 299 Query: 384 DKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIP 428 + P LTL GC C L F ++++ IP Sbjct: 300 RNETQNEPYP-----LTLPGCTHS-----CPLEKFAELLD-PVIP 333 >1ND5-A nrPDB Length = 354 Score = 59.8 bits (143), Expect = 2e-09, Method: Composition-based stats. Identities = 79/406 (19%), Positives = 130/406 (32%), Gaps = 80/406 (19%) Query: 29 KLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRL 88 +L+ V +V RHG R+P P +WP G LT G E LG Y R+R Sbjct: 2 ELKFVTLVFRHGDRSPIDTFP----TDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRY 57 Query: 89 VADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFN 148 + QV I + +RT + A L P +++ +P L+ Sbjct: 58 RKF----LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIW------NPILLWQ 107 Query: 149 PLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDE 208 P+ L + + F+ELE S E Q Sbjct: 108 PIPVHTVPL------------SEDQLLYLPFRNCPRFQELE-------SETLKSEEFQKR 148 Query: 209 SCSLTQALPSELKVSA-DNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNT 267 + + K+S L G + S + + + P W + Sbjct: 149 LHPYKDFIATLGKLSGLHGQDLFG---IWSKVYDPLYCESVHNFTLPSWATEDTMTKLRE 205 Query: 268 LLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDT 327 L L Y + + E +R + L++ I + +A + ++ + HDT Sbjct: 206 LSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK------RATQIPSYKKLIMYSAHDT 259 Query: 328 NLANLGGALELNWTLPGQPDNTPPGG-----ELVFERWRRLSDNSQWIQVSLVFQTLQQM 382 ++ L AL++ PP EL FE+ ++++ +T Sbjct: 260 TVSGLQMALDV------YNGLLPPYASCHLTELYFEK------GEYFVEMYYRNET---- 303 Query: 383 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIP 428 P L L GC C L F ++V IP Sbjct: 304 --------QHEP--YPLMLPGCSPS-----CPLERFAELVG-PVIP 333 >5CDH-A nrPDB Length = 336 Score = 47.9 bits (112), Expect = 8e-06, Method: Composition-based stats. Identities = 56/343 (16%), Positives = 112/343 (32%), Gaps = 50/343 (14%) Query: 34 VIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGL 93 V + RHG R P P W LG LT G + +G R++ + + L Sbjct: 5 VDIIRHGDRTPIV-------ALPTVNYQWQEGLGQLTAEGMQQEYKMGVAFRKKYIEE-L 56 Query: 94 LAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLA-PDCAITVHTQADTSSPDPLFNPLKT 152 + G + + + RT + ++ GL P ++ A TS+ F P+ Sbjct: 57 HLLPEHYEYGTIYVRSTDYARTLMSAQSLLMGLYPPGTGPSI--PAGTSALPHAFQPI-- 112 Query: 153 GVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSL 212 + + I+ + + + RE Q ++ L Sbjct: 113 -PVFSAPSKYDEVIIQQVDRKERK----------------KLMEQYVFSTREWQQKNNEL 155 Query: 213 TQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLH 272 P +++ N+ + + Q P P S+ T+++ Sbjct: 156 KDKYPLWSRLTGINIDTLEDLETVG---HTLYVHQIHNAPMP---EGLASNDIETIINSA 209 Query: 273 NAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANL 332 F ++ ++A ++ L+ I L +K + ++ HDT +A++ Sbjct: 210 EWAFMAQEKPQQIANVYSSKLMTNIADYLNSGSMKKSK------LKYVLLSAHDTTIASV 263 Query: 333 GGALELNWTLPGQP-DNTPPGGELVFERWRRLSDNSQWIQVSL 374 L G P + +PP V N ++++ Sbjct: 264 LSFL-------GAPLEKSPPYASNVNFSLYDNGANYYTVKITY 299 >1SK9-A nrPDB Length = 439 Score = 37.9 bits (86), Expect = 0.009, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 85/271 (31%), Gaps = 51/271 (18%) Query: 7 PFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKAT--------QLMQDVTPD- 57 PF SL L+ S + + ++ V ++SRHG R PT + +Q D Sbjct: 26 PFFSLEDELSVSSKLPK---DCRITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDF 82 Query: 58 -------AWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIAD 110 + + LTP G + + G QR A LA+ P I A Sbjct: 83 KGKFAFLKTYNYTLGADDLTPFGEQQLVNSGIKFYQRYKA---LARSVVP-----FIRAS 134 Query: 111 VDERTRKTGEAFAAG--------------LAPDCAITVHTQAD-TSSPDPLFNPLKTGVC 155 +R +GE F G AP ++ + ++ D K Sbjct: 135 GSDRVIASGEKFIEGFQQAKLADPGATNRAAPAISVIIPESETFNNTLDHGVCT-KFEAS 193 Query: 156 QLDN---ANVTD----AILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDE 208 QL + AN T I +RA + T + ++ + +F + Sbjct: 194 QLGDEVAANFTALFAPDIRARAEKHLPGVTLTDEDVVSLMD-MCSFDTVARTSDASQLSP 252 Query: 209 SCSLTQALPSELKVSADNVSLTGAVSLASML 239 C L + ++ + L Sbjct: 253 FCQLFTHNEWKKYNYLQSLGKYYGYGAGNPL 283 >4TXA-A nrPDB Length = 484 Score = 34.8 bits (78), Expect = 0.072, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 91/324 (28%), Gaps = 68/324 (20%) Query: 114 RTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQ-LDNANVTDAIL----- 167 R R A + G + + Q L+ ++ CQ L A +A+ Sbjct: 151 RIRAMRAARSLGERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGPARQEEALKLVLLA 210 Query: 168 -----SRAGGSIADFTGHR------QTAFRELERVLNFPQSNLCLKREKQDESCSLTQAL 216 + + + F R Q + + V+ C K K+DE SL Q Sbjct: 211 LEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLK 270 Query: 217 PSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWG---RITDSHQWNTLLSLHN 273 E + + + RI QW++LL Sbjct: 271 EEF------------------RTYEALRREHDSQIVQIAMEAGLRIAPD-QWSSLL---- 307 Query: 274 AQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLG 333 +S + + +I TP A V T L G NL L Sbjct: 308 ----------YGDQSHKSHMQSIIDKLQTP---ASFAQSVQELTIALQRTGDPANLNRLR 354 Query: 334 GALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM---RDKTPLSL 390 LEL + PD PP W +L + + V V L K Sbjct: 355 PHLELLANIDPSPDAPPP-------TWEQLENG--LVAVRTVVHGLVDYIQNHSKKGADQ 405 Query: 391 NTPPGEVKLTLAGCEERNAQGMCS 414 PP K C + +G C Sbjct: 406 QQPPQHSKYKTYMCRDMKQRGGCP 429 >2DE3-A nrPDB Length = 365 Score = 32.1 bits (71), Expect = 0.46, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 53/196 (27%), Gaps = 40/196 (20%) Query: 13 IPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPD-----AWPTWPVKLG 67 + L P S+ P +LE V + Q + D +W W G Sbjct: 174 VELVPISSPGVDVPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLPWA---G 230 Query: 68 WLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLA 127 L G + LG +R V ++ R R A Sbjct: 231 ELQATGARPVVDLGLDERNAYA--------------SVWTVSSGLVRQRPGLVQRLVDAA 276 Query: 128 PDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHR-----Q 182 D + D S V L AN+ + + G ADF Sbjct: 277 VDAGL---WARDHSD----------AVTSLHAANLGVSTGAVGQGFGADFQQRLVPRLDH 323 Query: 183 TAFRELERVLNFPQSN 198 A LER F +N Sbjct: 324 DALALLERTQQFLLTN 339 >4KPS-B nrPDB Length = 165 Score = 32.1 bits (71), Expect = 0.49, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%) Query: 262 SHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLF 321 + + N ++ N + ++ R L D I A+T V L Sbjct: 48 TTKINNIIDKMNGNYDSIRGEFNQVEKRINMLADRIDDAVTDIWSYNAKLLVLLENDKTL 107 Query: 322 IAGHDTNLANL 332 HD N+ NL Sbjct: 108 DM-HDANVKNL 117 >4MQB-A nrPDB Length = 208 Score = 30.2 bits (66), Expect = 1.7, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 2/106 (1%) Query: 102 SGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNAN 161 + Q E R E GL PD I ++ A+ + N ++ Sbjct: 102 AYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLK 161 Query: 162 VTDAILSRAGGSIADFTGHRQT--AFRELERVLNFPQSNLCLKREK 205 + ++ I + + ++ A + LE V+ + EK Sbjct: 162 FHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 207 >1BII-A nrPDB Length = 365 Score = 29.4 bits (64), Expect = 2.8, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 6/56 (10%) Query: 353 GELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERN 408 G L+ W+ D +I ++ + ++ T + K AG ER+ Sbjct: 131 GRLLRGYWQFAYDGCDYIALN------EDLKTWTAADMAAQITRRKWEQAGAAERD 180 >5YSW-A nrPDB Length = 441 Score = 29.4 bits (64), Expect = 3.2, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 20/61 (32%) Query: 340 WTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKL 399 W P P G L F Q ++ + + +R + L PP EV L Sbjct: 363 WPDPDLDLTRPRGPHLAFGHGVHQCLGQQLARMEMQAGYAELLRRLPNVRLAVPPEEVPL 422 Query: 400 T 400 Sbjct: 423 R 423 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.307 0.120 0.319 Lambda K H 0.267 0.0366 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,240,844 Number of Sequences: 36641 Number of extensions: 500232 Number of successful extensions: 1296 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 1255 Number of HSP's gapped (non-prelim): 26 length of query: 432 length of database: 10,336,785 effective HSP length: 100 effective length of query: 332 effective length of database: 6,672,685 effective search space: 2215331420 effective search space used: 2215331420 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 60 (27.9 bits)