BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P05982
(274 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1QRD-A nrPDB 564 e-161
1DXQ-A nrPDB 536 e-153
5A4K-A nrPDB 471 e-133
5LBT-A nrPDB 231 3e-61
3L9X-A nrPDB 72 2e-13
4F8Y-A nrPDB 70 7e-13
4C0X-A nrPDB 52 3e-07
6DXP-A nrPDB 43 1e-04
2B3D-A nrPDB 39 0.002
2HPV-A nrPDB 38 0.005
3W78-A nrPDB 37 0.008
4N9Q-A nrPDB 36 0.019
3W77-A nrPDB 35 0.032
4M0C-A nrPDB 35 0.049
4ICI-A nrPDB 29 2.5
1CEV-A nrPDB 28 3.1
3KLB-A nrPDB 28 3.3
3AD9-B nrPDB 28 3.3
2EF5-A nrPDB 28 3.4
6NBK-A nrPDB 28 4.0
3LSS-A nrPDB 28 4.0
3ZIU-A nrPDB 28 4.8
2YLL-A nrPDB 28 5.1
1T0I-A nrPDB 27 6.7
3HH8-A nrPDB 27 7.6
5ZI5-A nrPDB 27 9.4
>1QRD-A nrPDB
Length = 273
Score = 564 bits (1453), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 2 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 61
AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK
Sbjct: 1 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 60
Query: 62 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 121
DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL
Sbjct: 61 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 120
Query: 122 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 181
VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG
Sbjct: 121 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 180
Query: 182 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK 241
FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK
Sbjct: 181 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK 240
Query: 242 EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 274
EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK
Sbjct: 241 EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 273
>1DXQ-A nrPDB
Length = 273
Score = 536 bits (1380), Expect = e-153, Method: Compositional matrix adjust.
Identities = 256/273 (93%), Positives = 265/273 (97%)
Query: 2 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 61
A RRALIVLAH+E+TSFNYAMKEAAVEALKK+GWEV+ESDLYAMNFNP+ISRNDITGE K
Sbjct: 1 AARRALIVLAHSEKTSFNYAMKEAAVEALKKRGWEVLESDLYAMNFNPIISRNDITGELK 60
Query: 62 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 121
DS+NFQYP ESSLAYKEGRLSPDIVAE KKLEAADLVIFQFPL WFGVPAILKGWFERVL
Sbjct: 61 DSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERVL 120
Query: 122 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 181
VAGFAYTYA MYD GPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG
Sbjct: 121 VAGFAYTYAAMYDNGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 180
Query: 182 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK 241
FQVLEPQLVYSIGHTPPDAR+Q+LEGWKKRLETVWEE+PLYFAPSSLFDLNFQAGFLL K
Sbjct: 181 FQVLEPQLVYSIGHTPPDARMQILEGWKKRLETVWEETPLYFAPSSLFDLNFQAGFLLMK 240
Query: 242 EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 274
EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK
Sbjct: 241 EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 273
>5A4K-A nrPDB
Length = 294
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/274 (85%), Positives = 249/274 (90%)
Query: 1 MAVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEP 60
M RRALIVLAH+ERTSFNYAMKEAA ALKKKGWEVVESDLYAMNFNP+ISR DITG+
Sbjct: 21 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 80
Query: 61 KDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERV 120
KD NFQYP ES LAYKEG LSPDIVAEQKKLEAADLVIFQFPL WFGVPAILKGWFERV
Sbjct: 81 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 140
Query: 121 LVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
+ FAYTYA MYDKGPF +KK +LSITTGGSGSMYSLQG+HGDMNVILWPIQSGIL FC
Sbjct: 141 FIGEFAYTYAAMYDKGPFWSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 200
Query: 181 GFQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLK 240
GFQVLEPQL YSIGHTP DAR+Q+LEGWKKRLE +W+E+PLYFAPSSLFDLNFQAGFL+K
Sbjct: 201 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 260
Query: 241 KEVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 274
KEVQ+E+K KFGLSVGHHLGKSIP DNQIKARK
Sbjct: 261 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK 294
>5LBT-A nrPDB
Length = 237
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 143/221 (64%)
Query: 1 MAVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEP 60
MA ++ LIV AH E SFN ++K AV+ L ++G V SDLYAMN P + DITG
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
Query: 61 KDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERV 120
+ E F Y VE+ AYK+ L+ DI EQKK+ ADLVIFQFPLYWF VPAILKGW +RV
Sbjct: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 121 LVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
L GFA+ YD G Q K LLS+TTGG+ MY+ GV+GD LWP+Q G L FC
Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
Query: 181 GFQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPL 221
GF+VL PQ+ ++ + R ++ W +RL+T+W+E P+
Sbjct: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221
>3L9X-A nrPDB
Length = 413
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 84 DIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKT 143
DI AEQ+ L ADL+++Q P+ W+ +P +LK W ++V G+AY + K
Sbjct: 282 DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGT----ALHGKHL 337
Query: 144 LLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCGFQVLEP 187
L ++TTGG S + + G H +V+ P+Q+ + +CG L P
Sbjct: 338 LWAVTTGGGESHFEI-GAHPGFDVLSQPLQATAI-YCGLNWLPP 379
>4F8Y-A nrPDB
Length = 196
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 32/206 (15%)
Query: 5 RALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSE 64
+ LIV H TSFN + + L K+ V DLYA +F+P++ N+
Sbjct: 2 KILIVYTHPNPTSFNAEILKQVQTNLSKEH-TVSTLDLYAEHFDPVLQFNE--------- 51
Query: 65 NFQYPVESSLAYKEGRLSPDIVAEQKKLEA----ADLVIFQFPLYWFGVPAILKGWFERV 120
+K L+ VAE +K AD +IF FP++W G+PAILKG+ +RV
Sbjct: 52 ----------THKRRDLAK--VAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRV 99
Query: 121 LVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
VA FAY+Y + +G Q K + ITT + S +++ V V ++ IL+ C
Sbjct: 100 FVADFAYSYKKVGLEGHLQGKSAWI-ITTHNTPS-FAMPFVQDYGKV----LKKQILKPC 153
Query: 181 GFQVLEPQLVYSIGHTPPDARVQVLE 206
++ + SI D R ++L
Sbjct: 154 AISPVKLTELTSIEKISDDERQKLLH 179
>4C0X-A nrPDB
Length = 203
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 78 EGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGP 137
E +LS + + E AAD V+ P+Y F VP LK W +RV VAG + Y +G
Sbjct: 72 EAKLSAETLEE---FLAADAVVIGAPMYNFTVPTQLKAWIDRVAVAGKTFRYTEAGPQGL 128
Query: 138 FQNKKTLLSITTGG 151
NKK +L T GG
Sbjct: 129 CGNKKVVLVSTAGG 142
>6DXP-A nrPDB
Length = 223
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 34 GWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLE 93
G ++E DL AM P + R + + + + Q + ++A LS ++AE L+
Sbjct: 57 GDRLIEHDLSAMAL-PTLDR-PLFAALRGAVDPQPAIREAVA-----LSDQLIAE---LK 106
Query: 94 AADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSG 153
A+DL++ P+Y VP LK WF+ V A + Y + +G + + ++ + G
Sbjct: 107 ASDLLVIGAPMYNLNVPTDLKKWFDLVARARETFRYTESWPQGLVEGVRAVVVSSRG--- 163
Query: 154 SMYSLQGVH-GDMNVILWPIQSGILRFCGFQVLEPQLVYSIG 194
G+H G+ + P +L G Q E + +Y+ G
Sbjct: 164 ------GIHQGETTDAVTPYLRAVLGLMGIQ--EVEFIYAEG 197
>2B3D-A nrPDB
Length = 204
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 84 DIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYAT----------MY 133
D+ AE + AD+VI+Q P +W G P +K + + V G YA+ Y
Sbjct: 60 DVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKY 119
Query: 134 DKGPF-QNKKTLLSIT 148
G Q KK +LS+T
Sbjct: 120 GSGGLVQGKKYMLSLT 135
>2HPV-A nrPDB
Length = 208
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 14/109 (12%)
Query: 94 AADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGG-- 151
+AD V+ P++ VP LK W + + VAG + Y K KK L + GG
Sbjct: 94 SADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFY 153
Query: 152 SGSMYSLQGVHGDMNVILWPIQSGILRFCGFQVLEPQLVYSIGHTPPDA 200
G ++ Q + IL F G ++ + I H P A
Sbjct: 154 EGKDFASQYI------------KAILNFIGVDQVDGLFIEGIDHFPDRA 190
>3W78-A nrPDB
Length = 211
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 21/192 (10%)
Query: 17 SFNYAMKEAAVEALKKKG--WEVVESDLYAMNFNPLISRNDIT--GEPKDSENFQYPVES 72
SF A+ EA +EA K + EVV DL+ P I + G+ E F+ E
Sbjct: 17 SFGMAVGEAFIEAYKNEHPQDEVVTIDLFNTTV-PAIDADVFAAWGKFAAGEGFEALTEV 75
Query: 73 SLAYKEGRLSPDIVAEQKKLEA---ADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTY 129
+ A LE AD +F P++ F P ++K + + V +AG + Y
Sbjct: 76 Q--------QQKVAAMNTNLETFMNADRYVFVTPMWNFSYPPVVKAYLDNVAIAGKTFKY 127
Query: 130 ATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCGFQVLEPQL 189
G + KK L TGG +YS +G + ++ +++ +L F G E
Sbjct: 128 TENGPVGLLEGKKALHIQATGG---VYS-EGAYAAVDFGRNHLKT-VLGFVGVNDTEYIA 182
Query: 190 VYSIGHTPPDAR 201
V + P A+
Sbjct: 183 VEGMNANPEKAQ 194
>4N9Q-A nrPDB
Length = 212
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 69 PVESSLAYKEG-RLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAY 127
P + SLA + LS +V E L +DL++ P+Y F VP+ LK W ++++ G +
Sbjct: 64 PEQRSLAMQADLALSDQLVGE---LFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTF 120
Query: 128 TYATMYDKGPFQNKKTL 144
+ + D G Q + L
Sbjct: 121 DF--VLDNGVAQYRPLL 135
>3W77-A nrPDB
Length = 208
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 37 VVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEGRLSPDIVAEQ--KKLEA 94
VVE DLY P + + I G K + F E + A VA++ +
Sbjct: 39 VVELDLYKEEL-PYVGVDMINGTFKAGKGFDLTEEEAKAVA--------VADKYLNQFLE 89
Query: 95 ADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGG 151
AD V+F FPL+ +PA+L + + + AG + Y G +KK L GG
Sbjct: 90 ADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGG 146
>4M0C-A nrPDB
Length = 223
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 74 LAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMY 133
L +E +++ + ++ ++A+ + PL+ F +P+ LK + + +++A + Y
Sbjct: 74 LTREEQKVTERMSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETG 133
Query: 134 DKGPFQNKKTLLSITTGGSGSMYS 157
G ++ + +L I SG +Y+
Sbjct: 134 SVGLLKDGRRMLVIQ--ASGGIYT 155
>4ICI-A nrPDB
Length = 171
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 71 ESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFE 118
SS+ + ++ P I ++++ + D+V +P++W P I+ + E
Sbjct: 64 RSSVEMNDPKMRPAIKSKKENIGTYDVVFIGYPIWWDLAPRIINTFIE 111
>1CEV-A nrPDB
Length = 299
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 55 DITG-EPKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLV 98
D+ G +P D+ PV L Y+E L+ +++AE + + +A+ V
Sbjct: 226 DLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFV 270
>3KLB-A nrPDB
Length = 162
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 23/151 (15%)
Query: 20 YAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEG 79
Y +A+ +K + +DLY + + D+ K S SS+ ++
Sbjct: 11 YFSCSGVTKAVAEKLAAITGADLYEIKPEVPYTEADLDWNDKKSR-------SSVEMRDA 63
Query: 80 RLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQ 139
P I E +++ FP++W+ P I+ T+ YD F
Sbjct: 64 LSRPAISGTLFHPEKYEVLFVGFPVWWYIAPTIIN-------------TFLESYD---FA 107
Query: 140 NKKTLLSITTGGSGSMYSLQGVHGDMNVILW 170
K + T+GGSG + +H I+W
Sbjct: 108 GKIVVPFATSGGSGIGNCEKNLHKAYPDIVW 138
>3AD9-B nrPDB
Length = 404
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 182 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPL 221
F V+E Q+ ++ P AR VL W ++T + SP+
Sbjct: 298 FHVIEEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPI 337
>2EF5-A nrPDB
Length = 290
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 59 EPKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLV 98
+P + PV L Y+E L +I+AE ++++ DLV
Sbjct: 222 DPTLAPGVGTPVPGGLTYREAHLLMEILAESGRVQSLDLV 261
>6NBK-A nrPDB
Length = 297
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 55 DITG-EPKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLV 98
D+ G +P D+ PV L+Y+E L+ +++AE + +A+ V
Sbjct: 224 DLDGLDPHDAPGVGTPVIGGLSYRESHLAMEMLAEADIITSAEFV 268
>3LSS-A nrPDB
Length = 484
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 230 DLNFQAGFLLKKEVQEEQKKNKFGLSVGHHLGKSIP 265
DL+ Q L K+ Q E++++K L+VG+ L +S+P
Sbjct: 115 DLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVP 150
>3ZIU-A nrPDB
Length = 637
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 66 FQYPVESSL--AYKEGRLSPDIVAEQKKLEAADLVIFQFPLYW--FGVPA 111
F YP S L + EG + DI++ K+L+ D++ P+ W FG+PA
Sbjct: 44 FPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVL---HPIGWDAFGLPA 90
>2YLL-A nrPDB
Length = 454
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 18 FNYAMKEAAVEALKKKGWEVVESDLYAMN 46
FN + E A +A KGW V+++D Y N
Sbjct: 195 FNIGLDEYANDATDAKGWSVLQADKYYPN 223
>1T0I-A nrPDB
Length = 191
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 92 LEAADLVIFQFPLYWFGVPAILKGWFERV 120
+ A D+++F P Y +G PA LK +R+
Sbjct: 82 VNALDIIVFVTPQYNWGYPAALKNAIDRL 110
>3HH8-A nrPDB
Length = 294
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 42 LYAMNFNPLISRNDITGEPKDSENFQYPVESSLAY-----KEGRLSPDIVAEQKKLEAAD 96
+Y+ N I++ I +PK+ E ++ +++ +A KE + D +AE KKL
Sbjct: 134 IYSKN----IAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTS 189
Query: 97 LVIFQFPLYWFGVPA 111
F++ +GVP+
Sbjct: 190 EGCFKYFSKAYGVPS 204
>5ZI5-A nrPDB
Length = 921
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 82 SPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMY 133
SP+ + L ++V +F YW G ++ WF L G A M+
Sbjct: 313 SPETKTDLGILRVLEVVAHEFFHYWSGDRVTIRDWFNLPLKEGLTTFRAAMF 364
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1QRD-A nrPDB 464 e-131
1DXQ-A nrPDB 464 e-131
5A4K-A nrPDB 444 e-125
5LBT-A nrPDB 324 3e-89
4F8Y-A nrPDB 202 1e-52
6DXP-A nrPDB 152 1e-37
3L9X-A nrPDB 139 1e-33
4C0X-A nrPDB 101 3e-22
Sequences not found previously or not previously below threshold:
2Z98-A nrPDB 101 5e-22
4ESE-A nrPDB 100 6e-22
1T5B-A nrPDB 100 1e-21
3W78-A nrPDB 85 3e-17
2HPV-A nrPDB 79 2e-15
3W77-A nrPDB 78 4e-15
4N9Q-A nrPDB 66 2e-11
4M0C-A nrPDB 63 2e-10
2B3D-A nrPDB 60 1e-09
5MP4-A nrPDB 41 6e-04
3KLB-A nrPDB 36 0.021
1X77-A nrPDB 36 0.026
3SVL-A nrPDB 35 0.029
1T0I-A nrPDB 35 0.035
4ICI-A nrPDB 34 0.057
1ZOR-A nrPDB 34 0.11
4HLN-A nrPDB 33 0.11
4HCX-A nrPDB 33 0.12
3US8-A nrPDB 32 0.29
4J8P-A nrPDB 32 0.30
3IVD-A nrPDB 32 0.32
4LTN-A nrPDB 31 0.43
4C76-A nrPDB 31 0.46
1WCG-A nrPDB 30 1.2
4AOY-A nrPDB 30 1.2
4LA4-A nrPDB 30 1.4
5YEQ-A nrPDB 29 1.6
3ZQ6-A nrPDB 29 1.7
3LSS-A nrPDB 29 2.3
4O0M-A nrPDB 29 2.5
3RU8-X nrPDB 29 2.6
6BL1-B nrPDB 28 4.2
1Z5X-E nrPDB 27 9.6
>1QRD-A nrPDB
Length = 273
Score = 464 bits (1194), Expect = e-131, Method: Composition-based stats.
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 2 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 61
AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK
Sbjct: 1 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 60
Query: 62 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 121
DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL
Sbjct: 61 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 120
Query: 122 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 181
VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG
Sbjct: 121 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 180
Query: 182 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK 241
FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK
Sbjct: 181 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK 240
Query: 242 EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 274
EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK
Sbjct: 241 EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 273
>1DXQ-A nrPDB
Length = 273
Score = 464 bits (1193), Expect = e-131, Method: Composition-based stats.
Identities = 256/273 (93%), Positives = 265/273 (97%)
Query: 2 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 61
A RRALIVLAH+E+TSFNYAMKEAAVEALKK+GWEV+ESDLYAMNFNP+ISRNDITGE K
Sbjct: 1 AARRALIVLAHSEKTSFNYAMKEAAVEALKKRGWEVLESDLYAMNFNPIISRNDITGELK 60
Query: 62 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 121
DS+NFQYP ESSLAYKEGRLSPDIVAE KKLEAADLVIFQFPL WFGVPAILKGWFERVL
Sbjct: 61 DSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERVL 120
Query: 122 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 181
VAGFAYTYA MYD GPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG
Sbjct: 121 VAGFAYTYAAMYDNGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 180
Query: 182 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLKK 241
FQVLEPQLVYSIGHTPPDAR+Q+LEGWKKRLETVWEE+PLYFAPSSLFDLNFQAGFLL K
Sbjct: 181 FQVLEPQLVYSIGHTPPDARMQILEGWKKRLETVWEETPLYFAPSSLFDLNFQAGFLLMK 240
Query: 242 EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 274
EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK
Sbjct: 241 EVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 273
>5A4K-A nrPDB
Length = 294
Score = 444 bits (1141), Expect = e-125, Method: Composition-based stats.
Identities = 234/274 (85%), Positives = 249/274 (90%)
Query: 1 MAVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEP 60
M RRALIVLAH+ERTSFNYAMKEAA ALKKKGWEVVESDLYAMNFNP+ISR DITG+
Sbjct: 21 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 80
Query: 61 KDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERV 120
KD NFQYP ES LAYKEG LSPDIVAEQKKLEAADLVIFQFPL WFGVPAILKGWFERV
Sbjct: 81 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 140
Query: 121 LVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
+ FAYTYA MYDKGPF +KK +LSITTGGSGSMYSLQG+HGDMNVILWPIQSGIL FC
Sbjct: 141 FIGEFAYTYAAMYDKGPFWSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 200
Query: 181 GFQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLLK 240
GFQVLEPQL YSIGHTP DAR+Q+LEGWKKRLE +W+E+PLYFAPSSLFDLNFQAGFL+K
Sbjct: 201 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 260
Query: 241 KEVQEEQKKNKFGLSVGHHLGKSIPADNQIKARK 274
KEVQ+E+K KFGLSVGHHLGKSIP DNQIKARK
Sbjct: 261 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK 294
>5LBT-A nrPDB
Length = 237
Score = 324 bits (830), Expect = 3e-89, Method: Composition-based stats.
Identities = 111/221 (50%), Positives = 143/221 (64%)
Query: 1 MAVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEP 60
MA ++ LIV AH E SFN ++K AV+ L ++G V SDLYAMN P + DITG
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
Query: 61 KDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERV 120
+ E F Y VE+ AYK+ L+ DI EQKK+ ADLVIFQFPLYWF VPAILKGW +RV
Sbjct: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 121 LVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
L GFA+ YD G Q K LLS+TTGG+ MY+ GV+GD LWP+Q G L FC
Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
Query: 181 GFQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEESPL 221
GF+VL PQ+ ++ + R ++ W +RL+T+W+E P+
Sbjct: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221
>4F8Y-A nrPDB
Length = 196
Score = 202 bits (514), Expect = 1e-52, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 5 RALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSE 64
+ LIV H TSFN + + L K+ V DLYA +F+P++ N+
Sbjct: 2 KILIVYTHPNPTSFNAEILKQVQTNLSKEH-TVSTLDLYAEHFDPVLQFNE--------- 51
Query: 65 NFQYPVESSLAYKEGRLSPDIVAEQKKLEA----ADLVIFQFPLYWFGVPAILKGWFERV 120
+K L+ VAE +K AD +IF FP++W G+PAILKG+ +RV
Sbjct: 52 ----------THKRRDLAK--VAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRV 99
Query: 121 LVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
VA FAY+Y + +G Q K + ITT + S +++ V V ++ IL+ C
Sbjct: 100 FVADFAYSYKKVGLEGHLQGKSAWI-ITTHNTPS-FAMPFVQDYGKV----LKKQILKPC 153
Query: 181 GFQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWE 217
++ + SI D R ++L + + E
Sbjct: 154 AISPVKLTELTSIEKISDDERQKLLHKVAQITRNILE 190
>6DXP-A nrPDB
Length = 223
Score = 152 bits (384), Expect = 1e-37, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 22/181 (12%)
Query: 16 TSFNYAMKEA--AVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESS 73
TS + A G ++E DL AM P + R + + + + Q + +
Sbjct: 37 TSLTNQLINEFLAARQAAGHGDRLIEHDLSAMAL-PTLDR-PLFAALRGAVDPQPAIREA 94
Query: 74 LAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMY 133
+A LS ++AE L+A+DL++ P+Y VP LK WF+ V A + Y +
Sbjct: 95 VA-----LSDQLIAE---LKASDLLVIGAPMYNLNVPTDLKKWFDLVARARETFRYTESW 146
Query: 134 DKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCGFQVLEPQLVYSI 193
+G + + ++ + GG G+ + P +L G Q E + +Y+
Sbjct: 147 PQGLVEGVRAVVVSSRGGIH--------QGETTDAVTPYLRAVLGLMGIQ--EVEFIYAE 196
Query: 194 G 194
G
Sbjct: 197 G 197
>3L9X-A nrPDB
Length = 413
Score = 139 bits (350), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 84 DIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKT 143
DI AEQ+ L ADL+++Q P+ W+ +P +LK W ++V G+AY + K
Sbjct: 282 DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGT----ALHGKHL 337
Query: 144 LLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCGFQVLEPQLVYSIGHTPPDARVQ 203
L ++TTGG S + + G H +V+ P+Q+ + +CG L P ++ +
Sbjct: 338 LWAVTTGGGESHFEI-GAHPGFDVLSQPLQATAI-YCGLNWLPPFAMHCTFICDDETLEG 395
Query: 204 VLEGWKKRLETVWEE 218
+K+RL W+E
Sbjct: 396 QARHYKQRLLE-WQE 409
>4C0X-A nrPDB
Length = 203
Score = 101 bits (252), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 70 VESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTY 129
V + E +LS + + E AAD V+ P+Y F VP LK W +RV VAG + Y
Sbjct: 64 VRDAAQAFEAKLSAETLEE---FLAADAVVIGAPMYNFTVPTQLKAWIDRVAVAGKTFRY 120
Query: 130 ATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCGFQVLEPQL 189
+G NKK +L T GG + H D L F G LE
Sbjct: 121 TEAGPQGLCGNKKVVLVSTAGGLHAGQPTGAGHEDF-------LKVFLGFIGITDLEIVR 173
Query: 190 VYSIGHTPPD 199
+ + + P
Sbjct: 174 AHGLAYGPEQ 183
>2Z98-A nrPDB
Length = 200
Score = 101 bits (250), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 31 KKKGWEVVESDLYAMNFNPLISRNDITGEPKDSENF-QYPVESSLAYKEGRLSPDIVAEQ 89
K E+ DL A N P++ ++ G + S+ + +LA LS +++AE
Sbjct: 31 KHSADEITVRDLAA-NPIPVLD-GELVGALRPSDAPLTPRQQEALA-----LSDELIAE- 82
Query: 90 KKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITT 149
L+A D+++ P+Y F + LK +F+ V AG + Y +G KK ++ +
Sbjct: 83 --LKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSR 140
Query: 150 GGSGSMYSLQGVHGDM-NVILWPIQSGILRFCGFQVLEPQLVYSIGHT 196
G G+H D ++ P S L F G + + V++ G
Sbjct: 141 G---------GIHKDGPTDLVTPYLSTFLGFIGIT--DVKFVFAEGIA 177
>4ESE-A nrPDB
Length = 204
Score = 100 bits (249), Expect = 6e-22, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 21/164 (12%)
Query: 34 GWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLE 93
G ++ DL A P++ GE + + + LS +++AE L+
Sbjct: 38 GDQITVRDLAAQPI-PVLD-----GELVGALRPSGTALTPRQQEALALSDELIAE---LQ 88
Query: 94 AADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSG 153
A D+++ P+Y F +P LK +F+ + AG + Y +G K+ ++ + G
Sbjct: 89 ANDVIVIAAPMYNFNIPTQLKNYFDMIARAGVTFRYTEKGPEGLVTGKRAIILTSRG--- 145
Query: 154 SMYSLQGVHGDM-NVILWPIQSGILRFCGFQVLEPQLVYSIGHT 196
G+H D ++ P L F G + + V++ G
Sbjct: 146 ------GIHKDTPTDLVVPYLRLFLGFIGIT--DVEFVFAEGIA 181
>1T5B-A nrPDB
Length = 201
Score = 99.9 bits (247), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 23/183 (12%)
Query: 17 SFNYAMKEAAVEALKKKG--WEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSL 74
S + + + +E ++K E+ DL A N P++ GE + +
Sbjct: 16 SQSGQLTDYFIEQWREKHVADEITVRDLAA-NPVPVLD-----GELVGAMRPGDAPLTPR 69
Query: 75 AYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYD 134
LS +++AE L+A D+++ P+Y F +P LK +F+ + AG + Y
Sbjct: 70 QQDALALSDELIAE---LKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGP 126
Query: 135 KGPFQNKKTLLSITTGGSGSMYSLQGVHGDM-NVILWPIQSGILRFCGFQVLEPQLVYSI 193
+G K+ ++ + G G+H D ++ P L F G + V++
Sbjct: 127 EGLVTGKRAVVLSSRG---------GIHKDTPTDLIAPYLKVFLGFIGIT--DVNFVFAE 175
Query: 194 GHT 196
G
Sbjct: 176 GIA 178
>3W78-A nrPDB
Length = 211
Score = 84.8 bits (208), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 13/202 (6%)
Query: 5 RALIVLAHAERT--SFNYAMKEAAVEALKKKG--WEVVESDLYAMNFNPLISRNDITGEP 60
+ L + A+ SF A+ EA +EA K + EVV DL+ P I +
Sbjct: 3 KVLFITANPNSAEGSFGMAVGEAFIEAYKNEHPQDEVVTIDLFNTTV-PAIDADVFAAWG 61
Query: 61 KDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERV 120
K + + +L + + + + AD +F P++ F P ++K + + V
Sbjct: 62 KFAAGEGF---EALTEVQQQKVAAMNTNLETFMNADRYVFVTPMWNFSYPPVVKAYLDNV 118
Query: 121 LVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
+AG + Y G + KK L TGG S + V +L F
Sbjct: 119 AIAGKTFKYTENGPVGLLEGKKALHIQATGGVYSEGAYAAV-----DFGRNHLKTVLGFV 173
Query: 181 GFQVLEPQLVYSIGHTPPDARV 202
G E V + P A+
Sbjct: 174 GVNDTEYIAVEGMNANPEKAQE 195
>2HPV-A nrPDB
Length = 208
Score = 79.5 bits (194), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/216 (21%), Positives = 71/216 (32%), Gaps = 22/216 (10%)
Query: 5 RALIVLAHA----ERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFN-PLISRNDIT-- 57
+ L+V AH E S A E+ D+YA N P I ++
Sbjct: 3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAW 62
Query: 58 GEPKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWF 117
G + F +L+ + + + +AD V+ P++ VP LK W
Sbjct: 63 GALRAGAAF-----ETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWV 117
Query: 118 ERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGIL 177
+ + VAG + Y K KK L + GG + IL
Sbjct: 118 DTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFY----------EGKDFASQYIKAIL 167
Query: 178 RFCGFQVLEPQLVYSIGHTPPDARVQVLEGWKKRLE 213
F G ++ + I H P A + K E
Sbjct: 168 NFIGVDQVDGLFIEGIDHFPDRAEELLNTAMTKATE 203
>3W77-A nrPDB
Length = 208
Score = 77.9 bits (190), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 16/206 (7%)
Query: 6 ALIVLAHAERTSFNYAMK--EAAVEALKKKG--WEVVESDLYAMNFNPLISRNDITGEPK 61
L V A+ ++K EA + K+ VVE DLY P + + I G K
Sbjct: 4 VLFVKANNRPAEQAVSVKLYEAFLANYKEAHPNDTVVELDLYKEEL-PYVGVDMINGTFK 62
Query: 62 DSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVL 121
+ F E + A + AD V+F FPL+ +PA+L + + +
Sbjct: 63 AGKGFDLTEEEAKAVAVAD------KYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLN 116
Query: 122 VAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 181
AG + Y G +KK L GG S +M V + ++ F G
Sbjct: 117 RAGKTFKYTPEGPVGLIGDKKIALLNARGGVYS--EGPAAEVEMAV---KYVASMMGFFG 171
Query: 182 FQVLEPQLVYSIGHTPPDARVQVLEG 207
+E ++ P A + G
Sbjct: 172 ATNMETVIIEGHNQFPDKAEEIIAAG 197
>4N9Q-A nrPDB
Length = 212
Score = 65.6 bits (158), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 21/154 (13%)
Query: 66 FQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGF 125
Q S + LS +V E L +DL++ P+Y F VP+ LK W ++++ G
Sbjct: 62 PQPEQRSLAMQADLALSDQLVGE---LFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGV 118
Query: 126 AYTY----ATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCG 181
+ + + + K+ L+ + GG G + + MN P L F G
Sbjct: 119 TFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGE--NQAMNHA-DPWLRTALGFIG 175
Query: 182 FQVLEPQLVYSIGHTP---------PDARVQVLE 206
E +V + G +A ++L
Sbjct: 176 ID--EVTVVAAEGEESGGRSFEDSCDEAEQRLLA 207
>4M0C-A nrPDB
Length = 223
Score = 62.5 bits (150), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 2 AVRRALIVLAHA---ERTSFNYAMKEAAVEALKK---KGWEVVESDLYAMNFNPLISRND 55
A+ + LI+ AH + +S + + + +E+ K+ + + +LY + P+I +
Sbjct: 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLY-DDVVPMIDKTV 61
Query: 56 ITGEPKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKG 115
++ K L +E +++ + ++ ++A+ + PL+ F +P+ LK
Sbjct: 62 LSAWEKQ------GNGQELTREEQKVTERMSEILQQFKSANTYVIVLPLHNFNIPSKLKD 115
Query: 116 WFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSG 175
+ + +++A + Y G ++ + +L I G +Y+ + D+
Sbjct: 116 YMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGG--IYTNDDWYTDVEY-SHKYLKA 172
Query: 176 ILRFCGFQVLEPQLVYSIGHTPPDARVQVLEGWKK 210
+ F G + + Q+V + G D + +K+
Sbjct: 173 MFNFLGIE--DYQIVRAQGTAVLDPTEVLQNAYKE 205
>2B3D-A nrPDB
Length = 204
Score = 59.8 bits (143), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 13/131 (9%)
Query: 84 DIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYA-----------TM 132
D+ AE + AD+VI+Q P +W G P +K + + V G YA
Sbjct: 60 DVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKY 119
Query: 133 YDKGPFQNKKTLLSITTGGSGSMYSL--QGVHGDMNVILWPIQSGILRFCGFQVLEPQLV 190
G Q KK +LS+T ++ Q HG ++ +F G + L +
Sbjct: 120 GSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIA 179
Query: 191 YSIGHTPPDAR 201
+ P R
Sbjct: 180 NDVIKMPDVPR 190
>5MP4-A nrPDB
Length = 198
Score = 40.9 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 34/133 (25%)
Query: 25 AAVEALKKKGWEVV--ESDLYA--MNFNPLISRNDITGEPKDSENFQYPVESSLAYKEGR 80
AA +KKG E +D+Y +P ++ + YP
Sbjct: 16 AATAEAEKKGIEAAGGSADIYQVEETLSP-----EVVKALGGAPKPDYP----------- 59
Query: 81 LSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQN 140
+A Q L D +F P + PA K +++R ++ KG
Sbjct: 60 -----IATQDTLTEYDAFLFGIPTRFGNFPAQWKAFWDRT---------GGLWAKGALHG 105
Query: 141 KKTLLSITTGGSG 153
K ++TG G
Sbjct: 106 KVAGCFVSTGTGG 118
>3KLB-A nrPDB
Length = 162
Score = 35.9 bits (81), Expect = 0.021, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 35/171 (20%)
Query: 1 MAVRRALIVLAHAERTSFNYA-MKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGE 59
M R+ L+ F+ + + +A E L + +DLY P + + +
Sbjct: 2 MNDRKILVAY-------FSCSGVTKAVAEKLA----AITGADLY--EIKPEVPYTEADLD 48
Query: 60 PKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFER 119
D + SS+ ++ P I E +++ FP++W+ P I+ + E
Sbjct: 49 WNDKK-----SRSSVEMRDALSRPAISGTLFHPEKYEVLFVGFPVWWYIAPTIINTFLE- 102
Query: 120 VLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILW 170
+Y +A K + T+GGSG + +H I+W
Sbjct: 103 ------SYDFA---------GKIVVPFATSGGSGIGNCEKNLHKAYPDIVW 138
>1X77-A nrPDB
Length = 193
Score = 35.5 bits (80), Expect = 0.026, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 22/119 (18%)
Query: 89 QKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSIT 148
++++ AAD ++F P Y + + +LK + +A+ + PF K +
Sbjct: 67 REQIRAADALLFATPEYNYSMAGVLKNAID----------WASRPPEQPFSGKPAAILGA 116
Query: 149 TGGSGSMYSLQGVHGDMNVILWPIQSGILRFCGFQVL-EPQLVYSIGHTPPDARVQVLE 206
+ G L F L +P+++ S DA+ ++L+
Sbjct: 117 SAGR-----------FGTARAQYHLRQTLVFLDVHPLNKPEVMISSAQNAFDAQGRLLD 164
>3SVL-A nrPDB
Length = 193
Score = 35.2 bits (79), Expect = 0.029, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 63 SENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLV 122
P+ + +E + A +++ AD V+ P Y + VP LK + +
Sbjct: 41 PSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSR 100
Query: 123 AGFAYTYATMYDKGPFQNKKTLLSITTGG 151
P K L+ ++ G
Sbjct: 101 ----------LPDQPLAGKPVLIQTSSMG 119
>1T0I-A nrPDB
Length = 191
Score = 35.2 bits (79), Expect = 0.035, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 92 LEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGG 151
+ A D+++F P Y +G PA LK +R+ + K L+ G
Sbjct: 82 VNALDIIVFVTPQYNWGYPAALKNAIDRLY-HEW-------------HGKPALVVSYGGH 127
Query: 152 SGS 154
GS
Sbjct: 128 GGS 130
>4ICI-A nrPDB
Length = 171
Score = 34.4 bits (77), Expect = 0.057, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 41 DLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEGRLSPDIVAEQKKLEAADLVIF 100
DLY P+ T D N + SS+ + ++ P I ++++ + D+V
Sbjct: 41 DLY-----PIAPAQPYTSADLDWNNKR--SRSSVEMNDPKMRPAIKSKKENIGTYDVVFI 93
Query: 101 QFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSIT 148
+P++W P I+ + E + G N T+L T
Sbjct: 94 GYPIWWDLAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKT 141
>1ZOR-A nrPDB
Length = 399
Score = 33.6 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 14 ERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESS 73
E+ + E + + + W++++ L + + D+ + +D + Q +E++
Sbjct: 2 EKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAA 61
Query: 74 LAYKE-------GRLSPDIVAEQKK---LEAA------------DLVIFQFPLYWFGVPA 111
A K+ ++PD AE+ K L+ A D +F+ P+ VP
Sbjct: 62 KAIKKYGVGVKCATITPD--AERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPP 119
Query: 112 ILKGWFERVLVAGFAYT 128
++K W + +++ AY
Sbjct: 120 LVKRWKKPIIIGRHAYG 136
>4HLN-A nrPDB
Length = 633
Score = 33.2 bits (74), Expect = 0.11, Method: Composition-based stats.
Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 20/214 (9%)
Query: 27 VEALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEGRLSPDIV 86
V L ++G + A P + Q P+ + G L+PD++
Sbjct: 33 VAELSREGPAARPAQQLAPPVVPGFLAPPPPAPAQSPAPTQPPLPDAGV---GELAPDLL 89
Query: 87 AEQKKLEAADLVIFQFPLYWFGV-----PAILKGWFERVLVAGFAYTYATMYDKGPFQNK 141
E ++ D ++ + + K V V G A YA G
Sbjct: 90 LEGIAEDSIDTIVVAASEQDSEIMDANDQPLAKVTRSIVFVTGEAAPYAKSGGLGDVCGS 149
Query: 142 KTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFCGFQVLEPQLVYSIGHTPPDAR 201
+ G + + ++G + + + G + P S T
Sbjct: 150 LPIALAARGHRVMVVMPRYLNGTSD---KNYAKAL--YTGKHIKIPCFGGSHEVT----- 199
Query: 202 VQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQA 235
++ ++ V+ + P Y P SL+ NF A
Sbjct: 200 --FFHEYRDNVDWVFVDHPSYHRPGSLYGDNFGA 231
>4HCX-A nrPDB
Length = 409
Score = 33.2 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Query: 10 LAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYP 69
+++A + + + E + + + W++++ L + + D+ E +D+ + Q
Sbjct: 1 MSNAPKIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVT 60
Query: 70 VESSLAYKEGRLS---PDIVAEQKKLEAADL-----------------VIFQFPLYWFGV 109
++++ A K+ + I ++ ++E +L IF+ P+ V
Sbjct: 61 IDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNV 120
Query: 110 PAILKGWFERVLVAGFAYT 128
P ++ GW + +++ A+
Sbjct: 121 PRLVPGWTKPIVIGRHAFG 139
>3US8-A nrPDB
Length = 427
Score = 32.1 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 92/242 (38%), Gaps = 44/242 (18%)
Query: 28 EALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEGRLS---PD 84
+ + + W+ ++ L + + D+ E +D+ + Q ++++ A K+ +
Sbjct: 39 DEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCAT 98
Query: 85 IVAEQKKLEAADL-----------------VIFQFPLYWFGVPAILKGWFERVLVAGFAY 127
I ++ ++E L VIF+ P+ VP ++ GW + ++V A+
Sbjct: 99 ITPDEGRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAF 158
Query: 128 T--YATMYDKGPFQNKKTLLSITTGGSG---SMYSLQGVHGDMNVILWPIQSGILRFCGF 182
Y K P + K ++ + G +Y G + + ++ + I F
Sbjct: 159 GDQYRATDFKFPGKGKLSIKFVGEDGQTIEHDVYDAPGA--GVALAMYNLDESITEFA-- 214
Query: 183 QVLEPQLVYSIGHTPP---DARVQVLEGWKKRLETVWEESPLYFAPSSLFDLNFQAGFLL 239
Y + P + +L+ + R + ++++ +FD F A F
Sbjct: 215 ---RASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQK---------VFDEEFAAQFKA 262
Query: 240 KK 241
+K
Sbjct: 263 EK 264
>4J8P-A nrPDB
Length = 159
Score = 32.1 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 69 PVESSLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFA 126
SS+ + + P + ++ L D + FP++W P I+ + E AG
Sbjct: 54 ASRSSVEMSDSKSRPALYSKLGSLAEYDTIYIGFPIWWNLAPRIINTFIESGDFAGKT 111
>3IVD-A nrPDB
Length = 509
Score = 31.7 bits (70), Expect = 0.32, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 182 FQVLEPQLVYSIGHTPPDARVQVLEGWKKRLETVWEES 219
+ E + +Y+ P QV++GW K+L+ V +++
Sbjct: 275 VKNFELKTIYADEWKPDQQTKQVIDGWNKKLDEVVQQT 312
>4LTN-A nrPDB
Length = 197
Score = 31.3 bits (69), Expect = 0.43, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 20/119 (16%)
Query: 38 VESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEGRLSPDIVAEQ-KKLEAAD 96
+ L +++R+D G + A G LS + E AD
Sbjct: 17 TTAKLAEYALAHVLARSDSQGRHIHVIDLDPK-----ALLRGDLSNAKLKEAVDATCNAD 71
Query: 97 LVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSM 155
+I P+Y +LK + + + + K L + TGGS +
Sbjct: 72 GLIVATPIYKASYTGLLKAFLDIL-------------PQFALAGKAA-LPLATGGSPAH 116
>4C76-A nrPDB
Length = 204
Score = 31.3 bits (69), Expect = 0.46, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 14/79 (17%)
Query: 77 KEGRLSPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKG 136
+ S D+ + +E ADL++ P+Y + K F+ V D
Sbjct: 78 ERDSASADLQPHLQAIEQADLLLVGSPVYRASYTGLFKHLFDLV-------------DHQ 124
Query: 137 PFQNKKTLLSITTGGSGSM 155
+ +L+ T GGS
Sbjct: 125 SLKGVPVVLAAT-GGSERH 142
>1WCG-A nrPDB
Length = 464
Score = 29.8 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 82 SPDIVAEQKKLEAADLVIFQFPLYWFGVPAILKGWFER 119
S D + ++ + F P+Y P I+K W ++
Sbjct: 237 SDDDIETAERANQFERGWFGHPVYKGDYPPIMKKWVDQ 274
>4AOY-A nrPDB
Length = 402
Score = 29.8 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 96 DLVIFQFPLYWFGVPAILKGWFERVLVAGFAYT--YATMYDKGPFQNKKTLLSITTGGSG 153
D +F+ P+ + +KGW + + +A AY Y + P K L+ + G
Sbjct: 104 DGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEV 163
Query: 154 SMYSL 158
S ++
Sbjct: 164 SRQTI 168
>4LA4-A nrPDB
Length = 207
Score = 29.8 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 16/93 (17%)
Query: 87 AEQKKLEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLS 146
A + L AD +IF P + + + ++ + ++ ++ G K +
Sbjct: 67 ATPEVLAEADAIIFGTPTRFGNMCSQMRNFLDQT---------GGLWMSGGLIGKVGSVF 117
Query: 147 ITT----GGSGSM---YSLQGVHGDMNVILWPI 172
+T GG + + +H M ++ P
Sbjct: 118 TSTASQHGGQETTITSFHTTLLHHGMVIVGVPY 150
>5YEQ-A nrPDB
Length = 340
Score = 29.4 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 89 QKKLEAADLVIFQFP------LYWFGVPAILKGWFERVLVAGFAYTY 129
++ + +D++IF P +Y V LK + V GF Y
Sbjct: 68 EEAVRNSDIIIFLLPDMIQRTVYLERVKPYLKEGMDLVFAHGFNIHY 114
>3ZQ6-A nrPDB
Length = 324
Score = 29.4 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 2 AVRRALIVLAHAERTSFNYAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPK 61
+ ++ L++ + + +E K + +LYA+ +P ++ + + +
Sbjct: 41 SGKKTLVISTDPAHSLSDSLEREIGHTPTK------ITENLYAVEIDPEVAMEEYQAKLQ 94
Query: 62 DSENFQYPVESSLAYKEGRLSP-----DIVAEQKKLEA------ADLVIF-----QFPLY 105
+ + + + ++ D A + D+VIF L
Sbjct: 95 EQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLR 154
Query: 106 WFGVPAILKGWFERVL 121
P I+ W +++
Sbjct: 155 LLSFPEIMDSWVGKMI 170
>3LSS-A nrPDB
Length = 484
Score = 29.0 bits (63), Expect = 2.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 230 DLNFQAGFLLKKEVQEEQKKNKFGLSVGHHLGKSIP 265
DL+ Q L K+ Q E++++K L+VG+ L +S+P
Sbjct: 115 DLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVP 150
>4O0M-A nrPDB
Length = 524
Score = 29.0 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 109 VPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVI 168
+P +++G+ + + G G Q + TL+S T+G +++++Q ++ + +
Sbjct: 22 IPTMIEGFDD--ISHG-----------GLPQGRTTLVSGTSGTGKTLFAVQFLYNGITIF 68
Query: 169 LWP 171
P
Sbjct: 69 NEP 71
>3RU8-X nrPDB
Length = 282
Score = 29.0 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 92 LEAADLVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLL 145
L+ I +PLY G P I++ W V AG A + + F +
Sbjct: 97 LKNRPAYIIVYPLYSGGDPEIVQEWLRTVAYAGKALKAGSSQARIYFDAGHSAW 150
>6BL1-B nrPDB
Length = 425
Score = 28.2 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 20 YAMKEAAVEALKKKGWEVVESDLYAMNFNPLISRNDITGEPKDSENFQYPVESSLAYKEG 79
++ E + + + WE+++ L + D+ E +D+ N Q +++ A K+
Sbjct: 8 GSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKH 67
Query: 80 RLS---PDIVAEQKKLEAADL-----------------VIFQFPLYWFGVPAILKGWFER 119
+ I ++K++E L +F+ + +P ++ GW +
Sbjct: 68 NVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKP 127
Query: 120 VLVAGFAYT 128
+++ AY
Sbjct: 128 IIIGRHAYG 136
>1Z5X-E nrPDB
Length = 310
Score = 27.1 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 12/109 (11%)
Query: 111 AILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILW 170
A+LK V++ A Y D L + + Y++ G M +
Sbjct: 152 ALLKACSSEVMMFRMARRYDAETDS-------ILFATNQPYTRESYTVAG----MGDTVE 200
Query: 171 PIQSGILRFCGFQVLEPQLVYSIGHTPPDARVQVLEGWK-KRLETVWEE 218
+ C +V + R + EGWK ++++ ++ E
Sbjct: 201 DLLRFCRHMCAMKVDNAEYALLTAIVIFSERPSLSEGWKVEKIQEIYIE 249
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.307 0.124 0.330
Lambda K H
0.267 0.0384 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,797,235
Number of Sequences: 36641
Number of extensions: 366827
Number of successful extensions: 1006
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 73
length of query: 274
length of database: 10,336,785
effective HSP length: 96
effective length of query: 178
effective length of database: 6,819,249
effective search space: 1213826322
effective search space used: 1213826322
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 58 (27.0 bits)