BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P04425
         (316 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1GLV-A nrPDB                                                          614   e-176
4IWX-A nrPDB                                                           40   0.001
3VPB-A nrPDB                                                           38   0.007
3VPD-A nrPDB                                                           31   0.62 
6DAM-A nrPDB                                                           30   1.1  
4DIM-A nrPDB                                                           30   1.1  
5N6U-A nrPDB                                                           30   1.5  
3NFY-A nrPDB                                                           28   4.0  
2ICU-A nrPDB                                                           28   4.2  
4X28-D nrPDB                                                           28   5.6  
4Q1V-A nrPDB                                                           27   8.2  

>1GLV-A nrPDB
          Length = 303

 Score =  614 bits (1584), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 302/316 (95%), Positives = 302/316 (95%), Gaps = 13/316 (4%)

Query: 1   MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK 60
           MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK
Sbjct: 1   MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK 60

Query: 61  QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR 120
           QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR
Sbjct: 61  QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR 120

Query: 121 DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180
           DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL
Sbjct: 121 DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180

Query: 181 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG 240
           GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR             GG
Sbjct: 181 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR-------------GG 227

Query: 241 RGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS 300
            GEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS
Sbjct: 228 GGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS 287

Query: 301 ITGMLMDAIEARLQQQ 316
           ITGMLMDAIEARLQQQ
Sbjct: 288 ITGMLMDAIEARLQQQ 303


>4IWX-A nrPDB
          Length = 320

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 38/249 (15%)

Query: 86  RKDPPFDTEF--------IYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPE 137
           RK P FD            Y T  L + E  G+  +N+  ++    +KL +         
Sbjct: 73  RKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQ------- 125

Query: 138 TLVTRNKAQLKAFWEKHS-DIILKPLDGMGGAS-IFRVKEGDPNLGVI-AETLTEHGT-- 192
            L+ R    L      HS D     +D +GGA  + ++ EG   +GV+ AET     +  
Sbjct: 126 -LLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVI 184

Query: 193 -------RYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPR 245
                   + + Q Y+   +  D R LVV G+ V   + R  + G+ R NL  GG     
Sbjct: 185 DAFRGLNAHILVQEYIKEAQGCDIRCLVV-GDEVVAAIERRAKEGDFRSNLHRGGAASVA 243

Query: 246 PLTESDWKIARQIGPTLKEKGLIFVGLDII----GDRLTEINVTSPTCIREIEAEFPVSI 301
            +T  + +IA +   T+    L   G+DI+    G  + E+N  SP  +  IE    + I
Sbjct: 244 SITPQEREIAIKAARTM---ALDVAGVDILRANRGPLVMEVN-ASPG-LEGIEKTTGIDI 298

Query: 302 TGMLMDAIE 310
            G ++  IE
Sbjct: 299 AGKMIRWIE 307


>3VPB-A nrPDB
          Length = 282

 Score = 37.7 bits (86), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 33/223 (14%)

Query: 70  VGEQDLP----LADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEK 125
           V ++ LP    L   DV ++R  P      +Y++ +LE A   G   +N    +  C +K
Sbjct: 33  VAQEPLPFNKALGRYDVAIIR--PVSMYRALYSSAVLEAA---GVHTINSSDVINVCGDK 87

Query: 126 LFTAWFSDL------TPETLVTRN-KAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDP 178
           + T  +S L       P++++  + +A LKA+ ++   +I KP  G  G  +  +++   
Sbjct: 88  ILT--YSKLYREGIPIPDSIIALSAEAALKAYEQRGFPLIDKPPIGSWGRLVSLIRDVFE 145

Query: 179 NLGVIA--ETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNL 236
              +I   E +     +  + Q Y+   K  D R + + GE +  C AR     E R N+
Sbjct: 146 GKTIIEHRELMGNSALKAHIVQEYI-QYKGRDIRCIAI-GEELLGCYARNIPPNEWRANV 203

Query: 237 AAGGRGEPRPLTESDWKIARQIGPTLKEKGLI----FVGLDII 275
           A GG       T S+ ++  ++  T+ +   I    FV +DI+
Sbjct: 204 ALGG-------TPSNIEVDEKLKETVVKAVSIVHGEFVSIDIL 239


>3VPD-A nrPDB
          Length = 281

 Score = 31.2 bits (69), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 30/163 (18%)

Query: 109 GTLIVNKPQSLRDCNEKLFTAWFSDLT--------PET-LVTRNKAQLKAFWEKHSDIIL 159
           G  +VN+P+ +  C +K    W + +         P+T L T  +  L+        ++L
Sbjct: 73  GIPVVNRPEVIEACGDK----WATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVL 128

Query: 160 KPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKD------GDKRVLV 213
           KP+ G  G  + +V +        AE L EH       Q+ L  I++       D RV V
Sbjct: 129 KPVIGSWGRLLAKVTD-----RAAAEALLEHKEVLGGFQHQLFYIQEYVEKPGRDIRVFV 183

Query: 214 VDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIAR 256
           V GE     + R  +      N A GG+ E  PLTE   +IAR
Sbjct: 184 V-GERAIAAIYR--RSAHWITNTARGGQAENCPLTE---EIAR 220


>6DAM-A nrPDB
          Length = 617

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 153 KHSDIILKPLDGMGGASIFRVKEGDPNLGV 182
           + SD +L  LD   G  ++ V+ GDP LG+
Sbjct: 147 QQSDTVLTALDAKTGKRVWSVQNGDPKLGM 176


>4DIM-A nrPDB
          Length = 403

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 11/147 (7%)

Query: 135 TPETLVTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTR 193
           T    V RN+ +LK   E     +I+K  D  G   I+  K+ +  +    ET+      
Sbjct: 124 TARHFVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRD 183

Query: 194 YCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESD-- 251
           YC+ + ++   + G +  +  +       L  +P G ET  +  A   G   PL   D  
Sbjct: 184 YCIVEEFIEGYEFGAQAFVYKND-----VLFVMPHGDETYMSHTAVPVGHYVPLDVKDDI 238

Query: 252 -WKIARQIGPTLKEKGL--IFVGLDII 275
             K   ++   +K  GL    V +D+I
Sbjct: 239 IEKTKTEVKKAIKALGLNNCAVNVDMI 265


>5N6U-A nrPDB
          Length = 836

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 163 DGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYC 222
           D  G + +F++     N+ V A+     G  +  A ++LP IK+ D R+L++  +     
Sbjct: 326 DNKGESFVFKIN----NIPVFAK-----GANWIPADSFLPRIKEEDYRLLLIRAKEAGVN 376

Query: 223 LARIPQGG 230
           + R+  GG
Sbjct: 377 MLRVWGGG 384


>3NFY-A nrPDB
          Length = 267

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 115 KPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRV 173
           + +SL+D  E+L   W   + PE L  R K  L +     S  +LK L+G+    I  +
Sbjct: 154 RSESLKDVLERLLPYWNERIAPEVL--RGKTILISAHGNSSRALLKHLEGISDEDIINI 210


>2ICU-A nrPDB
          Length = 229

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 187 LTEHGTRYCMAQNYLPAIKDGDKR----VLVVDGEPVPYCLARIPQGGETRGNLAAG 239
           L +HG   C A  +    K+GDK+    +   DG+P+   +A I      RG+ A G
Sbjct: 97  LWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPI--FMAAIGSTPFERGDEAEG 151


>4X28-D nrPDB
          Length = 373

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 155 SDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGT 192
           +D  L P +   GA++F V  GDP + V A   T  G+
Sbjct: 158 ADAFLVPAETDSGAAVFLVAAGDPGVAVTALATTGLGS 195


>4Q1V-A nrPDB
          Length = 710

 Score = 27.3 bits (59), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 230 GETRGNLAAGGR----GEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVT 285
           GET  N A GG     G+ + LT+ +W ++  +G   K K +IF  ++ +      +NV+
Sbjct: 332 GETY-NSANGGSYFQAGKVKQLTKGNWLVSEILGFNTKRKEVIFTAVEGLRSGHFAVNVS 390

Query: 286 S 286
           +
Sbjct: 391 N 391


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

1GLV-A nrPDB                                                          556   e-159
4IWX-A nrPDB                                                          265   2e-71

Sequences not found previously or not previously below threshold:

3VPB-A nrPDB                                                           55   3e-08
3VPD-A nrPDB                                                           55   5e-08
5K2M-A nrPDB                                                           51   8e-07
1UC8-A nrPDB                                                           50   2e-06
5I47-A nrPDB                                                           41   8e-04
1X7P-A nrPDB                                                           30   1.2  
4FE1-A nrPDB                                                           30   1.3  
4P0P-B nrPDB                                                           28   3.7  
2VP0-A nrPDB                                                           28   6.5  
3UB0-A nrPDB                                                           27   9.7  

>1GLV-A nrPDB
          Length = 303

 Score =  556 bits (1434), Expect = e-159,   Method: Composition-based stats.
 Identities = 302/316 (95%), Positives = 302/316 (95%), Gaps = 13/316 (4%)

Query: 1   MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK 60
           MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK
Sbjct: 1   MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK 60

Query: 61  QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR 120
           QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR
Sbjct: 61  QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR 120

Query: 121 DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180
           DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL
Sbjct: 121 DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180

Query: 181 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG 240
           GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR             GG
Sbjct: 181 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR-------------GG 227

Query: 241 RGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS 300
            GEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS
Sbjct: 228 GGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS 287

Query: 301 ITGMLMDAIEARLQQQ 316
           ITGMLMDAIEARLQQQ
Sbjct: 288 ITGMLMDAIEARLQQQ 303


>4IWX-A nrPDB
          Length = 320

 Score =  265 bits (677), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 38/249 (15%)

Query: 86  RKDPPFDTEF--------IYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPE 137
           RK P FD            Y T  L + E  G+  +N+  ++    +KL +         
Sbjct: 73  RKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQ------- 125

Query: 138 TLVTRNKAQLKAFWEKHS-DIILKPLDGMGGAS-IFRVKEGDPNLGVI-AETLTEHGT-- 192
            L+ R    L      HS D     +D +GGA  + ++ EG   +GV+ AET     +  
Sbjct: 126 -LLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVI 184

Query: 193 -------RYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPR 245
                   + + Q Y+   +  D R LVV G+ V   + R  + G+ R NL  GG     
Sbjct: 185 DAFRGLNAHILVQEYIKEAQGCDIRCLVV-GDEVVAAIERRAKEGDFRSNLHRGGAASVA 243

Query: 246 PLTESDWKIARQIGPTLKEKGLIFVGLDII----GDRLTEINVTSPTCIREIEAEFPVSI 301
            +T  + +IA +   T+    L   G+DI+    G  + E+N  SP  +  IE    + I
Sbjct: 244 SITPQEREIAIKAARTM---ALDVAGVDILRANRGPLVMEVN-ASPG-LEGIEKTTGIDI 298

Query: 302 TGMLMDAIE 310
            G ++  IE
Sbjct: 299 AGKMIRWIE 307


>3VPB-A nrPDB
          Length = 282

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 28/257 (10%)

Query: 70  VGEQDLP----LADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEK 125
           V ++ LP    L   DV ++R    +    +Y++ +LE A   G   +N    +  C +K
Sbjct: 33  VAQEPLPFNKALGRYDVAIIRPVSMYRA--LYSSAVLEAA---GVHTINSSDVINVCGDK 87

Query: 126 LFTA----WFSDLTPETLVTRN-KAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180
           + T           P++++  + +A LKA+ ++   +I KP  G  G  +  +++     
Sbjct: 88  ILTYSKLYREGIPIPDSIIALSAEAALKAYEQRGFPLIDKPPIGSWGRLVSLIRDVFEGK 147

Query: 181 GVIA--ETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAA 238
            +I   E +     +  + Q Y+   K  D R + + GE +  C AR     E R N+A 
Sbjct: 148 TIIEHRELMGNSALKAHIVQEYI-QYKGRDIRCIAI-GEELLGCYARNIPPNEWRANVAL 205

Query: 239 GGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDII-----GDRLTEINVTSPTCIREI 293
           GG      + E   +   +    +  +   FV +DI+     G  + E+N       +  
Sbjct: 206 GGTPSNIEVDEKLKETVVKAVSIVHGE---FVSIDILEHPNKGYVVNELNDVPE--FKGF 260

Query: 294 EAEFPVSITGMLMDAIE 310
                +++   L++ I+
Sbjct: 261 MVATNINVAQKLVEYIK 277


>3VPD-A nrPDB
          Length = 281

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 20/222 (9%)

Query: 98  ATYILERAEEKGTLIVNKPQSLRDCNEKLFT----AWFSDLTPETLVTRNKAQLKAFWEK 153
                      G  +VN+P+ +  C +K  T    A      P+T +  ++ +     E 
Sbjct: 62  GLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEA 121

Query: 154 HS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCM--AQNYLPAIKDGDKR 210
               ++LKP+ G  G  + +V +      ++       G ++ +   Q Y+      D R
Sbjct: 122 FGYPVVLKPVIGSWGRLLAKVTDRAAAEALLEHKEVLGGFQHQLFYIQEYV-EKPGRDIR 180

Query: 211 VLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFV 270
           V VV GE     + R         N A GG+ E  PLTE   +IAR      +  G   V
Sbjct: 181 VFVV-GERAIAAIYRRS--AHWITNTARGGQAENCPLTE---EIARLSVGAAEAVGGGVV 234

Query: 271 GLDII----GDRLTEINVTSPTCIREIEAEFPVSITGMLMDA 308
            +D+     G  + E+N T     +       V I G ++  
Sbjct: 235 AVDLFESERGLLVNEVNHTME--FKNSVHTTGVDIPGEILRY 274


>5K2M-A nrPDB
          Length = 273

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 25/240 (10%)

Query: 79  DLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLF-TAWFSDLTPE 137
           DLDV+++R    F        Y     E +G   VN  + + +  +KLF T   +   P 
Sbjct: 42  DLDVVIIRNVSHFKAL-----YTARLFESEGIPTVNSSRLIFEAGDKLFATLRLAGKVPV 96

Query: 138 T---LVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRY 194
                       L+        ++ KP+ G  G  + +V + D    V+          Y
Sbjct: 97  PEWKAALSEGGALRVPDSLGYPLVSKPVFGSWGRLLAKVNDRDSLEAVLEHRKWMKNPLY 156

Query: 195 CM--AQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDW 252
            +   Q ++      D R  V+ GE     + R         N A GG+ EP        
Sbjct: 157 GIHYFQEFV-EKPGRDIRSYVIGGE-FVGAIYRYSN--HWITNTARGGKAEPCS-DPEVE 211

Query: 253 KIARQIGPTLKEKGLIFVGLDII----GDRLTEINVTSPTCIREIEAEFPVSITGMLMDA 308
           +++ +      E  L    +DI     G  + E+N       +         + G L++ 
Sbjct: 212 ELSVKAWEAFGEGAL---AIDIFESEKGLLVNEVNPNME--FKNAARVTGADMAGKLVEY 266


>1UC8-A nrPDB
          Length = 280

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 78/222 (35%), Gaps = 20/222 (9%)

Query: 98  ATYILERAEEKGTLIVNKPQSLRDCNEKLFT----AWFSDLTPETLVTRNKAQLKAFWEK 153
                      G  +VN+P+ +  C +K  T    A      P+T +  ++ +     E 
Sbjct: 62  GLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEA 121

Query: 154 HS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCM--AQNYLPAIKDGDKR 210
               ++LKP+ G  G  +                    G ++ +   Q Y+      D R
Sbjct: 122 FGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYV-EKPGRDIR 180

Query: 211 VLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFV 270
           V VV GE     + R         N A GG+ E  PLTE   +++ +    +   G   V
Sbjct: 181 VFVV-GERAIAAIYRRS--AHWITNTARGGQAENCPLTEEVARLSVKAAEAV---GGGVV 234

Query: 271 GLDII----GDRLTEINVTSPTCIREIEAEFPVSITGMLMDA 308
            +D+     G  + E+N T     +       V I G ++  
Sbjct: 235 AVDLFESERGLLVNEVNHTME--FKNSVHTTGVDIPGEILKY 274


>5I47-A nrPDB
          Length = 277

 Score = 40.8 bits (94), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 15/208 (7%)

Query: 109 GTLIVNKPQSLRDCNEK---LFTAWFSDL-TPETLVT-RNKAQLKAFWEKHSDIILKPLD 163
           GT +VN+  + R   ++   L     +D+  PET V    +A   A  E    ++LK L 
Sbjct: 76  GTPVVNRAATARLLADRMALLRHLILADIPVPETRVCFGEEAIFAAIAEIGYPVVLKSLT 135

Query: 164 GMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCL 223
              G  +  V++ D    ++   +   G R  + Q ++PA      R LVV G  +   +
Sbjct: 136 VDPGFPVALVEDQDAAEAIVEHRIMLGGERAVLVQQFIPARAGQSVR-LVVAGRSL-AGI 193

Query: 224 ARIPQGG--ETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTE 281
            +   GG    R        G+P PLT    +I  ++G      G   V +   GD    
Sbjct: 194 EQRTHGGWRPGRDATYEAYTGDPAPLTALAERIIERLG-----TGTYAVEVVETGDGPVV 248

Query: 282 INVTSPTCIREIEAEFPVSITGMLMDAI 309
           + V +    R +     V + GM+ D +
Sbjct: 249 VGVANLVDFRSLSGR-GVDVAGMIADFV 275


>1X7P-A nrPDB
          Length = 287

 Score = 30.4 bits (67), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 223 LARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVG--LDIIGDRLT 280
           L RIP   +  G L        RP +  +     +    L   GLI  G   D+   +  
Sbjct: 117 LDRIPVREDFLGVLFD------RPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSV 170

Query: 281 EINVTSPTCIREIEAEFPVSITGMLMDAIEAR 312
             +  S   +  +    P    G +MD +EAR
Sbjct: 171 RSSTGSLFSLPAVRVPSP----GEVMDWVEAR 198


>4FE1-A nrPDB
          Length = 755

 Score = 30.0 bits (66), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 212 LVVDGEPVPYCLARIPQGGETRGNLAAG 239
           +VVD +PVP    +  + G     LA G
Sbjct: 14  VVVDNDPVPTSFEKWAKPGHFDRTLARG 41


>4P0P-B nrPDB
          Length = 393

 Score = 28.5 bits (62), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 120 RDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKP--LDGMGGASIF 171
           R   +K  T    +     LVTR KAQ      KH  ++L P  L   GG  + 
Sbjct: 40  RQARQKESTLRRQERKNAALVTRMKAQRPEECLKHIIVVLDPVLLQMEGGGQLL 93


>2VP0-A nrPDB
          Length = 250

 Score = 27.7 bits (60), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 64  EEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCN 123
           EEW+ F+ E     ADL +I +R  P    E  Y         E+  + +   Q L + +
Sbjct: 133 EEWYKFIEESIHVQADL-IIYLRTSP----EVAYERIRQRARSEESCVPLKYLQELHELH 187

Query: 124 EKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGM 165
           E          + + LV      L+    ++        D +
Sbjct: 188 EDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDAI 229


>3UB0-A nrPDB
          Length = 199

 Score = 27.3 bits (59), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 161 PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGD 208
           PL  +  AS  R+    PNL V+++   E+   Y  A   +  +KD +
Sbjct: 120 PLSIIPAASATRLIVVTPNLEVLSKVRQENNVHYAGAIWSIVEVKDAN 167


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.313    0.134    0.364 

Lambda     K      H
   0.267   0.0402    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,149,498
Number of Sequences: 36641
Number of extensions: 501356
Number of successful extensions: 1248
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 25
length of query: 316
length of database: 10,336,785
effective HSP length: 97
effective length of query: 219
effective length of database: 6,782,608
effective search space: 1485391152
effective search space used: 1485391152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 59 (27.4 bits)