BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P04425
(316 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1GLV-A nrPDB 614 e-176
4IWX-A nrPDB 40 0.001
3VPB-A nrPDB 38 0.007
3VPD-A nrPDB 31 0.62
6DAM-A nrPDB 30 1.1
4DIM-A nrPDB 30 1.1
5N6U-A nrPDB 30 1.5
3NFY-A nrPDB 28 4.0
2ICU-A nrPDB 28 4.2
4X28-D nrPDB 28 5.6
4Q1V-A nrPDB 27 8.2
>1GLV-A nrPDB
Length = 303
Score = 614 bits (1584), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/316 (95%), Positives = 302/316 (95%), Gaps = 13/316 (4%)
Query: 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK 60
MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK
Sbjct: 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK 60
Query: 61 QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR 120
QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR
Sbjct: 61 QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR 120
Query: 121 DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180
DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL
Sbjct: 121 DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180
Query: 181 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG 240
GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR GG
Sbjct: 181 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR-------------GG 227
Query: 241 RGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS 300
GEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS
Sbjct: 228 GGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS 287
Query: 301 ITGMLMDAIEARLQQQ 316
ITGMLMDAIEARLQQQ
Sbjct: 288 ITGMLMDAIEARLQQQ 303
>4IWX-A nrPDB
Length = 320
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 38/249 (15%)
Query: 86 RKDPPFDTEF--------IYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPE 137
RK P FD Y T L + E G+ +N+ ++ +KL +
Sbjct: 73 RKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQ------- 125
Query: 138 TLVTRNKAQLKAFWEKHS-DIILKPLDGMGGAS-IFRVKEGDPNLGVI-AETLTEHGT-- 192
L+ R L HS D +D +GGA + ++ EG +GV+ AET +
Sbjct: 126 -LLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVI 184
Query: 193 -------RYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPR 245
+ + Q Y+ + D R LVV G+ V + R + G+ R NL GG
Sbjct: 185 DAFRGLNAHILVQEYIKEAQGCDIRCLVV-GDEVVAAIERRAKEGDFRSNLHRGGAASVA 243
Query: 246 PLTESDWKIARQIGPTLKEKGLIFVGLDII----GDRLTEINVTSPTCIREIEAEFPVSI 301
+T + +IA + T+ L G+DI+ G + E+N SP + IE + I
Sbjct: 244 SITPQEREIAIKAARTM---ALDVAGVDILRANRGPLVMEVN-ASPG-LEGIEKTTGIDI 298
Query: 302 TGMLMDAIE 310
G ++ IE
Sbjct: 299 AGKMIRWIE 307
>3VPB-A nrPDB
Length = 282
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 33/223 (14%)
Query: 70 VGEQDLP----LADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEK 125
V ++ LP L DV ++R P +Y++ +LE A G +N + C +K
Sbjct: 33 VAQEPLPFNKALGRYDVAIIR--PVSMYRALYSSAVLEAA---GVHTINSSDVINVCGDK 87
Query: 126 LFTAWFSDL------TPETLVTRN-KAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDP 178
+ T +S L P++++ + +A LKA+ ++ +I KP G G + +++
Sbjct: 88 ILT--YSKLYREGIPIPDSIIALSAEAALKAYEQRGFPLIDKPPIGSWGRLVSLIRDVFE 145
Query: 179 NLGVIA--ETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNL 236
+I E + + + Q Y+ K D R + + GE + C AR E R N+
Sbjct: 146 GKTIIEHRELMGNSALKAHIVQEYI-QYKGRDIRCIAI-GEELLGCYARNIPPNEWRANV 203
Query: 237 AAGGRGEPRPLTESDWKIARQIGPTLKEKGLI----FVGLDII 275
A GG T S+ ++ ++ T+ + I FV +DI+
Sbjct: 204 ALGG-------TPSNIEVDEKLKETVVKAVSIVHGEFVSIDIL 239
>3VPD-A nrPDB
Length = 281
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 30/163 (18%)
Query: 109 GTLIVNKPQSLRDCNEKLFTAWFSDLT--------PET-LVTRNKAQLKAFWEKHSDIIL 159
G +VN+P+ + C +K W + + P+T L T + L+ ++L
Sbjct: 73 GIPVVNRPEVIEACGDK----WATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVL 128
Query: 160 KPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKD------GDKRVLV 213
KP+ G G + +V + AE L EH Q+ L I++ D RV V
Sbjct: 129 KPVIGSWGRLLAKVTD-----RAAAEALLEHKEVLGGFQHQLFYIQEYVEKPGRDIRVFV 183
Query: 214 VDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIAR 256
V GE + R + N A GG+ E PLTE +IAR
Sbjct: 184 V-GERAIAAIYR--RSAHWITNTARGGQAENCPLTE---EIAR 220
>6DAM-A nrPDB
Length = 617
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 153 KHSDIILKPLDGMGGASIFRVKEGDPNLGV 182
+ SD +L LD G ++ V+ GDP LG+
Sbjct: 147 QQSDTVLTALDAKTGKRVWSVQNGDPKLGM 176
>4DIM-A nrPDB
Length = 403
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 11/147 (7%)
Query: 135 TPETLVTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTR 193
T V RN+ +LK E +I+K D G I+ K+ + + ET+
Sbjct: 124 TARHFVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRD 183
Query: 194 YCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESD-- 251
YC+ + ++ + G + + + L +P G ET + A G PL D
Sbjct: 184 YCIVEEFIEGYEFGAQAFVYKND-----VLFVMPHGDETYMSHTAVPVGHYVPLDVKDDI 238
Query: 252 -WKIARQIGPTLKEKGL--IFVGLDII 275
K ++ +K GL V +D+I
Sbjct: 239 IEKTKTEVKKAIKALGLNNCAVNVDMI 265
>5N6U-A nrPDB
Length = 836
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 163 DGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYC 222
D G + +F++ N+ V A+ G + A ++LP IK+ D R+L++ +
Sbjct: 326 DNKGESFVFKIN----NIPVFAK-----GANWIPADSFLPRIKEEDYRLLLIRAKEAGVN 376
Query: 223 LARIPQGG 230
+ R+ GG
Sbjct: 377 MLRVWGGG 384
>3NFY-A nrPDB
Length = 267
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 115 KPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRV 173
+ +SL+D E+L W + PE L R K L + S +LK L+G+ I +
Sbjct: 154 RSESLKDVLERLLPYWNERIAPEVL--RGKTILISAHGNSSRALLKHLEGISDEDIINI 210
>2ICU-A nrPDB
Length = 229
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 187 LTEHGTRYCMAQNYLPAIKDGDKR----VLVVDGEPVPYCLARIPQGGETRGNLAAG 239
L +HG C A + K+GDK+ + DG+P+ +A I RG+ A G
Sbjct: 97 LWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPI--FMAAIGSTPFERGDEAEG 151
>4X28-D nrPDB
Length = 373
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 155 SDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGT 192
+D L P + GA++F V GDP + V A T G+
Sbjct: 158 ADAFLVPAETDSGAAVFLVAAGDPGVAVTALATTGLGS 195
>4Q1V-A nrPDB
Length = 710
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 230 GETRGNLAAGGR----GEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVT 285
GET N A GG G+ + LT+ +W ++ +G K K +IF ++ + +NV+
Sbjct: 332 GETY-NSANGGSYFQAGKVKQLTKGNWLVSEILGFNTKRKEVIFTAVEGLRSGHFAVNVS 390
Query: 286 S 286
+
Sbjct: 391 N 391
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1GLV-A nrPDB 556 e-159
4IWX-A nrPDB 265 2e-71
Sequences not found previously or not previously below threshold:
3VPB-A nrPDB 55 3e-08
3VPD-A nrPDB 55 5e-08
5K2M-A nrPDB 51 8e-07
1UC8-A nrPDB 50 2e-06
5I47-A nrPDB 41 8e-04
1X7P-A nrPDB 30 1.2
4FE1-A nrPDB 30 1.3
4P0P-B nrPDB 28 3.7
2VP0-A nrPDB 28 6.5
3UB0-A nrPDB 27 9.7
>1GLV-A nrPDB
Length = 303
Score = 556 bits (1434), Expect = e-159, Method: Composition-based stats.
Identities = 302/316 (95%), Positives = 302/316 (95%), Gaps = 13/316 (4%)
Query: 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK 60
MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK
Sbjct: 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK 60
Query: 61 QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR 120
QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR
Sbjct: 61 QNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR 120
Query: 121 DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180
DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL
Sbjct: 121 DCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180
Query: 181 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG 240
GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR GG
Sbjct: 181 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR-------------GG 227
Query: 241 RGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS 300
GEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS
Sbjct: 228 GGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS 287
Query: 301 ITGMLMDAIEARLQQQ 316
ITGMLMDAIEARLQQQ
Sbjct: 288 ITGMLMDAIEARLQQQ 303
>4IWX-A nrPDB
Length = 320
Score = 265 bits (677), Expect = 2e-71, Method: Composition-based stats.
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 38/249 (15%)
Query: 86 RKDPPFDTEF--------IYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPE 137
RK P FD Y T L + E G+ +N+ ++ +KL +
Sbjct: 73 RKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQ------- 125
Query: 138 TLVTRNKAQLKAFWEKHS-DIILKPLDGMGGAS-IFRVKEGDPNLGVI-AETLTEHGT-- 192
L+ R L HS D +D +GGA + ++ EG +GV+ AET +
Sbjct: 126 -LLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVI 184
Query: 193 -------RYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPR 245
+ + Q Y+ + D R LVV G+ V + R + G+ R NL GG
Sbjct: 185 DAFRGLNAHILVQEYIKEAQGCDIRCLVV-GDEVVAAIERRAKEGDFRSNLHRGGAASVA 243
Query: 246 PLTESDWKIARQIGPTLKEKGLIFVGLDII----GDRLTEINVTSPTCIREIEAEFPVSI 301
+T + +IA + T+ L G+DI+ G + E+N SP + IE + I
Sbjct: 244 SITPQEREIAIKAARTM---ALDVAGVDILRANRGPLVMEVN-ASPG-LEGIEKTTGIDI 298
Query: 302 TGMLMDAIE 310
G ++ IE
Sbjct: 299 AGKMIRWIE 307
>3VPB-A nrPDB
Length = 282
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 28/257 (10%)
Query: 70 VGEQDLP----LADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEK 125
V ++ LP L DV ++R + +Y++ +LE A G +N + C +K
Sbjct: 33 VAQEPLPFNKALGRYDVAIIRPVSMYRA--LYSSAVLEAA---GVHTINSSDVINVCGDK 87
Query: 126 LFTA----WFSDLTPETLVTRN-KAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 180
+ T P++++ + +A LKA+ ++ +I KP G G + +++
Sbjct: 88 ILTYSKLYREGIPIPDSIIALSAEAALKAYEQRGFPLIDKPPIGSWGRLVSLIRDVFEGK 147
Query: 181 GVIA--ETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAA 238
+I E + + + Q Y+ K D R + + GE + C AR E R N+A
Sbjct: 148 TIIEHRELMGNSALKAHIVQEYI-QYKGRDIRCIAI-GEELLGCYARNIPPNEWRANVAL 205
Query: 239 GGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDII-----GDRLTEINVTSPTCIREI 293
GG + E + + + + FV +DI+ G + E+N +
Sbjct: 206 GGTPSNIEVDEKLKETVVKAVSIVHGE---FVSIDILEHPNKGYVVNELNDVPE--FKGF 260
Query: 294 EAEFPVSITGMLMDAIE 310
+++ L++ I+
Sbjct: 261 MVATNINVAQKLVEYIK 277
>3VPD-A nrPDB
Length = 281
Score = 54.7 bits (130), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 20/222 (9%)
Query: 98 ATYILERAEEKGTLIVNKPQSLRDCNEKLFT----AWFSDLTPETLVTRNKAQLKAFWEK 153
G +VN+P+ + C +K T A P+T + ++ + E
Sbjct: 62 GLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEA 121
Query: 154 HS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCM--AQNYLPAIKDGDKR 210
++LKP+ G G + +V + ++ G ++ + Q Y+ D R
Sbjct: 122 FGYPVVLKPVIGSWGRLLAKVTDRAAAEALLEHKEVLGGFQHQLFYIQEYV-EKPGRDIR 180
Query: 211 VLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFV 270
V VV GE + R N A GG+ E PLTE +IAR + G V
Sbjct: 181 VFVV-GERAIAAIYRRS--AHWITNTARGGQAENCPLTE---EIARLSVGAAEAVGGGVV 234
Query: 271 GLDII----GDRLTEINVTSPTCIREIEAEFPVSITGMLMDA 308
+D+ G + E+N T + V I G ++
Sbjct: 235 AVDLFESERGLLVNEVNHTME--FKNSVHTTGVDIPGEILRY 274
>5K2M-A nrPDB
Length = 273
Score = 50.8 bits (120), Expect = 8e-07, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 25/240 (10%)
Query: 79 DLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLF-TAWFSDLTPE 137
DLDV+++R F Y E +G VN + + + +KLF T + P
Sbjct: 42 DLDVVIIRNVSHFKAL-----YTARLFESEGIPTVNSSRLIFEAGDKLFATLRLAGKVPV 96
Query: 138 T---LVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRY 194
L+ ++ KP+ G G + +V + D V+ Y
Sbjct: 97 PEWKAALSEGGALRVPDSLGYPLVSKPVFGSWGRLLAKVNDRDSLEAVLEHRKWMKNPLY 156
Query: 195 CM--AQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDW 252
+ Q ++ D R V+ GE + R N A GG+ EP
Sbjct: 157 GIHYFQEFV-EKPGRDIRSYVIGGE-FVGAIYRYSN--HWITNTARGGKAEPCS-DPEVE 211
Query: 253 KIARQIGPTLKEKGLIFVGLDII----GDRLTEINVTSPTCIREIEAEFPVSITGMLMDA 308
+++ + E L +DI G + E+N + + G L++
Sbjct: 212 ELSVKAWEAFGEGAL---AIDIFESEKGLLVNEVNPNME--FKNAARVTGADMAGKLVEY 266
>1UC8-A nrPDB
Length = 280
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/222 (20%), Positives = 78/222 (35%), Gaps = 20/222 (9%)
Query: 98 ATYILERAEEKGTLIVNKPQSLRDCNEKLFT----AWFSDLTPETLVTRNKAQLKAFWEK 153
G +VN+P+ + C +K T A P+T + ++ + E
Sbjct: 62 GLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEA 121
Query: 154 HS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCM--AQNYLPAIKDGDKR 210
++LKP+ G G + G ++ + Q Y+ D R
Sbjct: 122 FGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYV-EKPGRDIR 180
Query: 211 VLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFV 270
V VV GE + R N A GG+ E PLTE +++ + + G V
Sbjct: 181 VFVV-GERAIAAIYRRS--AHWITNTARGGQAENCPLTEEVARLSVKAAEAV---GGGVV 234
Query: 271 GLDII----GDRLTEINVTSPTCIREIEAEFPVSITGMLMDA 308
+D+ G + E+N T + V I G ++
Sbjct: 235 AVDLFESERGLLVNEVNHTME--FKNSVHTTGVDIPGEILKY 274
>5I47-A nrPDB
Length = 277
Score = 40.8 bits (94), Expect = 8e-04, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 15/208 (7%)
Query: 109 GTLIVNKPQSLRDCNEK---LFTAWFSDL-TPETLVT-RNKAQLKAFWEKHSDIILKPLD 163
GT +VN+ + R ++ L +D+ PET V +A A E ++LK L
Sbjct: 76 GTPVVNRAATARLLADRMALLRHLILADIPVPETRVCFGEEAIFAAIAEIGYPVVLKSLT 135
Query: 164 GMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCL 223
G + V++ D ++ + G R + Q ++PA R LVV G + +
Sbjct: 136 VDPGFPVALVEDQDAAEAIVEHRIMLGGERAVLVQQFIPARAGQSVR-LVVAGRSL-AGI 193
Query: 224 ARIPQGG--ETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTE 281
+ GG R G+P PLT +I ++G G V + GD
Sbjct: 194 EQRTHGGWRPGRDATYEAYTGDPAPLTALAERIIERLG-----TGTYAVEVVETGDGPVV 248
Query: 282 INVTSPTCIREIEAEFPVSITGMLMDAI 309
+ V + R + V + GM+ D +
Sbjct: 249 VGVANLVDFRSLSGR-GVDVAGMIADFV 275
>1X7P-A nrPDB
Length = 287
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 223 LARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVG--LDIIGDRLT 280
L RIP + G L RP + + + L GLI G D+ +
Sbjct: 117 LDRIPVREDFLGVLFD------RPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSV 170
Query: 281 EINVTSPTCIREIEAEFPVSITGMLMDAIEAR 312
+ S + + P G +MD +EAR
Sbjct: 171 RSSTGSLFSLPAVRVPSP----GEVMDWVEAR 198
>4FE1-A nrPDB
Length = 755
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 212 LVVDGEPVPYCLARIPQGGETRGNLAAG 239
+VVD +PVP + + G LA G
Sbjct: 14 VVVDNDPVPTSFEKWAKPGHFDRTLARG 41
>4P0P-B nrPDB
Length = 393
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 120 RDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKP--LDGMGGASIF 171
R +K T + LVTR KAQ KH ++L P L GG +
Sbjct: 40 RQARQKESTLRRQERKNAALVTRMKAQRPEECLKHIIVVLDPVLLQMEGGGQLL 93
>2VP0-A nrPDB
Length = 250
Score = 27.7 bits (60), Expect = 6.5, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Query: 64 EEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCN 123
EEW+ F+ E ADL +I +R P E Y E+ + + Q L + +
Sbjct: 133 EEWYKFIEESIHVQADL-IIYLRTSP----EVAYERIRQRARSEESCVPLKYLQELHELH 187
Query: 124 EKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGM 165
E + + LV L+ ++ D +
Sbjct: 188 EDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDAI 229
>3UB0-A nrPDB
Length = 199
Score = 27.3 bits (59), Expect = 9.7, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 161 PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGD 208
PL + AS R+ PNL V+++ E+ Y A + +KD +
Sbjct: 120 PLSIIPAASATRLIVVTPNLEVLSKVRQENNVHYAGAIWSIVEVKDAN 167
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.313 0.134 0.364
Lambda K H
0.267 0.0402 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,149,498
Number of Sequences: 36641
Number of extensions: 501356
Number of successful extensions: 1248
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 25
length of query: 316
length of database: 10,336,785
effective HSP length: 97
effective length of query: 219
effective length of database: 6,782,608
effective search space: 1485391152
effective search space used: 1485391152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 59 (27.4 bits)