BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P04183 (234 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2ORV-A nrPDB 477 e-135 1XBT-A nrPDB 398 e-111 2J87-A nrPDB 258 1e-69 5FUX-A nrPDB 176 1e-44 4UXH-A nrPDB 174 4e-44 2JA1-A nrPDB 121 3e-28 1XX6-A nrPDB 115 2e-26 3E2I-A nrPDB 108 2e-24 2B8T-A nrPDB 106 1e-23 2QPO-A nrPDB 100 4e-22 3ZVD-A nrPDB 31 0.41 2DGN-A nrPDB 28 3.4 2V40-A nrPDB 27 5.1 1RK6-A nrPDB 27 6.9 5JRJ-A nrPDB 27 9.3 >2ORV-A nrPDB Length = 234 Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust. Identities = 232/234 (99%), Positives = 232/234 (99%) Query: 1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR 60 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR Sbjct: 1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR 60 Query: 61 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI 120 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI Sbjct: 61 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI 120 Query: 121 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK 180 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK Sbjct: 121 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK 180 Query: 181 YHSVCRLCYFKKASGQPAGPDNKENCPVPGKPGEAVAARKLFAPQQILQCSPAN 234 YHSVCRLCYFKKASGQPAGPDN NCPVPGKPGEAVAARKLFAPQQILQCSPAN Sbjct: 181 YHSVCRLCYFKKASGQPAGPDNAANCPVPGKPGEAVAARKLFAPQQILQCSPAN 234 >1XBT-A nrPDB Length = 193 Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR 60 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR Sbjct: 1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR 60 Query: 61 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI 120 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI Sbjct: 61 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI 120 Query: 121 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK 180 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK Sbjct: 121 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK 180 Query: 181 YHSVCRLCYFKKA 193 YHSVCRLCYFKKA Sbjct: 181 YHSVCRLCYFKKA 193 >2J87-A nrPDB Length = 177 Score = 258 bits (660), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 120/171 (70%), Positives = 138/171 (80%) Query: 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPA 78 G IQ+I+GPMFSGKSTEL+RRVRR+QIAQYKC+ IKY+ D RY + THD+N EAL A Sbjct: 4 GHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDNRYGTGLWTHDKNNFEALEA 63 Query: 79 CLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILN 138 L DV Q +VIGIDEGQFFPDIVEFCE MAN GK VIVAALDGTFQRKPF ILN Sbjct: 64 TKLCDVLQSITDFSVIGIDEGQFFPDIVEFCERMANEGKIVIVAALDGTFQRKPFNNILN 123 Query: 139 LVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCY 189 L+ L+E VVKLTAVCM+CF+EA+++KRLG E E+E+IGG D Y SVCR CY Sbjct: 124 LLILSEMVVKLTAVCMKCFKEASFSKRLGEETEIEIIGGNDMYQSVCRKCY 174 >5FUX-A nrPDB Length = 182 Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 120/178 (67%), Gaps = 3/178 (1%) Query: 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEA- 75 G+I++I+GPMF+GK+TELMRRV+R + AQ C +IKY DTRYS + +HD+ + A Sbjct: 2 HGRIELIIGPMFAGKTTELMRRVQRHKHAQRSCYIIKYTGDTRYSEGAITSHDQRALTAN 61 Query: 76 LPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 + L DV E VI +DEGQFFPD+ FC A++GK VIV+ALD + ++PF Sbjct: 62 VSVSNLHDVGDEWRKYDVIAVDEGQFFPDVAAFCSKAADSGKVVIVSALDADYLQEPFEE 121 Query: 136 ILNLVPLAESVVKLTAVCMECF-REAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFKK 192 I LV A+SVVKL+AVCMEC R+A++T R E +++GG+D Y SVCR CY K Sbjct: 122 ICLLVSRADSVVKLSAVCMECHNRKASFTYRTVKSDERKLVGGSDMYMSVCRSCYETK 179 >4UXH-A nrPDB Length = 184 Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 91/178 (51%), Positives = 122/178 (68%), Gaps = 3/178 (1%) Query: 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEAL 76 RG+I++I+GPMF+GK+TELMRRV+R A+ C VIKY+KDTRY + +HD+ + A Sbjct: 4 RGRIELIIGPMFAGKTTELMRRVKREIHARRSCFVIKYSKDTRYDEHNVASHDQLMLRAQ 63 Query: 77 PAC-LLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 A L +V V+ IDEGQFF D+V+FC A+AGK V+V+ALDG ++RKPFG Sbjct: 64 AAVSQLTEVRDTWKRFDVLAIDEGQFFSDLVDFCNTAADAGKVVMVSALDGDYRRKPFGQ 123 Query: 136 ILNLVPLAESVVKLTAVCMECFRE-AAYTKRLGTEKEVEVIGGADKYHSVCRLCYFKK 192 I LVP E+V KLTAVCM C + A +T+R ++ E+IGGAD Y + CR CY K+ Sbjct: 124 ICELVPYCEAVDKLTAVCMMCHEQPACFTRRTVNVEQQELIGGADMYIATCRECYSKQ 181 >2JA1-A nrPDB Length = 197 Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 102/180 (56%), Gaps = 9/180 (5%) Query: 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEALP 77 G I+VI G MFSGKS EL+RRVRR Q A+ +V K D RYS +H+ ++A+P Sbjct: 10 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVP 69 Query: 78 ACLLRDVAQEALG-VAVIGIDEGQFFP-DIVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 +D+ + + VI IDE QFF DIVE + +AN G VIVA LD F+ PFG Sbjct: 70 VSASKDIFEHITEELDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQ 129 Query: 136 ILNLVPLAESVVKLTAVCMECFREAAYTKRL------GTEKEVEVIGGADKYHSVCRLCY 189 + L+ +AE V KL AVC C A+ T+RL + + ++G ++ Y CR C+ Sbjct: 130 VPQLMAIAEHVTKLQAVCSVCGSPASRTQRLIDGEPAAFDDPIILVGASESYEPRCRHCH 189 >1XX6-A nrPDB Length = 191 Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 102/183 (55%), Gaps = 9/183 (4%) Query: 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTME 74 K G ++VI+GPM+SGKS EL+RR+RR +IA+ K V K D RYS +H + Sbjct: 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQ 64 Query: 75 ALPACLLRDVAQE-ALGVAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGTFQRKP 132 A+ R++ + VI IDE QFF D IVE +A +G+ VI A LD F+ KP Sbjct: 65 AVAIKNSREILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFRGKP 124 Query: 133 FGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEK------EVEVIGGADKYHSVCR 186 FG I L+ +AE V K+ A+C+ C A T+RL K V +IG + Y + CR Sbjct: 125 FGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEARCR 184 Query: 187 LCY 189 C+ Sbjct: 185 KCH 187 >3E2I-A nrPDB Length = 219 Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 97/181 (53%), Gaps = 9/181 (4%) Query: 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALP 77 G I+ I G MFSGKS EL+RR+RR A+ K +V K A D RY +H+ N +EA+ Sbjct: 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAIN 87 Query: 78 ACLLRDVAQEAL-GVAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 ++ L V VIGIDE QFF D IV E ++ G VIVA LD F+ +PF Sbjct: 88 ISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEP 147 Query: 136 ILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEV------IGGADKYHSVCRLCY 189 + L+ ++E V KL AVC C ++ T+RL K ++ +G + Y CR + Sbjct: 148 MPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHH 207 Query: 190 F 190 Sbjct: 208 I 208 >2B8T-A nrPDB Length = 223 Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 101/206 (49%), Gaps = 21/206 (10%) Query: 15 SKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTME 74 SK G I+ I GPMF+GK+ EL+RR+ R + A K LV K DTR S T Sbjct: 8 SKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SIRNIQSRTGT 64 Query: 75 ALPAC-------LLRDVAQEALG--VAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAAL 124 +LP+ +L + + VIGIDE QFF D I E +A G VI++ L Sbjct: 65 SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGL 124 Query: 125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYT------KRLGTEKEVEVIGGA 178 D F+ +PFG I L A+ + KLTA+C EC EA ++ K ++ IG Sbjct: 125 DKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQ 184 Query: 179 DKYHSVCRLCYFKKASGQPAGPDNKE 204 + Y +VCR + K +P N E Sbjct: 185 EFYSAVCR--HHHKVPNRPYLNSNSE 208 >2QPO-A nrPDB Length = 184 Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 12/179 (6%) Query: 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSF-CTHDRNTMEAL- 76 G++ VI GPM+SGK+TEL+ V +++ + K V K D+RY S+ +H N +EA Sbjct: 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHV 62 Query: 77 ---PACLLRDVAQEALGVAVIGIDEGQFF-PDIVEFCEAMANAGKTVIVAALDGTFQRKP 132 P + + + ++ GV IDE QFF P + E + + + G V A LD T ++ P Sbjct: 63 IERPEEMRKYIEEDTRGVF---IDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNP 119 Query: 133 FGAILNLVPLAESVVKLTAVCMEC--FREAAYTKRLGTEKEVEVIGGADKYHSVCRLCY 189 F L+ LA++V+K AVC C + K G E+E++V GG +KY +VCR CY Sbjct: 120 FETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDV-GGQEKYIAVCRDCY 177 >3ZVD-A nrPDB Length = 190 Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 19/36 (52%) Query: 74 EALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFC 109 + L AC LRD+ L + ++ +D Q F DI F Sbjct: 55 KVLDACALRDLTDTNLEITIVKLDRNQKFRDIRHFL 90 >2DGN-A nrPDB Length = 457 Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 17/33 (51%) Query: 104 DIVEFCEAMANAGKTVIVAALDGTFQRKPFGAI 136 DIV C+ NAG TV+V + F P G I Sbjct: 58 DIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGII 90 >2V40-A nrPDB Length = 459 Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 19/33 (57%) Query: 104 DIVEFCEAMANAGKTVIVAALDGTFQRKPFGAI 136 DIV C+ NAG TV+V +++ F P G I Sbjct: 58 DIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGII 90 >1RK6-A nrPDB Length = 496 Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 18/67 (26%) Query: 81 LRDVAQEALGVAVIGIDEGQFFP--------DIVEFCEAMANAGKTV----------IVA 122 ++ +A +AL IGI G F+P +I+E C + G IV Sbjct: 184 MQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGEHIVQ 243 Query: 123 ALDGTFQ 129 AL+ TF+ Sbjct: 244 ALEETFR 250 >5JRJ-A nrPDB Length = 351 Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust. Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 24/106 (22%) Query: 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI--KYAKDTRYSSSFCTHDRNTMEA 75 RG++ I GP SGK+T ++ + Q C I ++A D Y+ + + + + Sbjct: 65 RGRVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLNDLLIS 124 Query: 76 LPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIV 121 P D ++AL E C+A+ +G ++ Sbjct: 125 QP-----DTGEQAL-----------------EICDALVRSGAVDLI 148 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2ORV-A nrPDB 404 e-113 1XBT-A nrPDB 325 9e-90 2J87-A nrPDB 277 3e-75 5FUX-A nrPDB 260 4e-70 4UXH-A nrPDB 256 4e-69 2B8T-A nrPDB 250 5e-67 2JA1-A nrPDB 249 5e-67 1XX6-A nrPDB 249 7e-67 3E2I-A nrPDB 247 3e-66 2QPO-A nrPDB 214 2e-56 Sequences not found previously or not previously below threshold: 3JC8-Ba nrPDB 35 0.024 1Z1N-X nrPDB 35 0.028 2ZOO-A nrPDB 32 0.23 5ZFQ-A nrPDB 30 0.68 3KJP-A nrPDB 30 0.68 3QVT-A nrPDB 30 0.90 3CAR-A nrPDB 29 1.5 3CCF-A nrPDB 29 1.6 1MG3-D nrPDB 29 1.6 3PIH-A nrPDB 29 1.7 5NV6-A nrPDB 29 1.9 1XP8-A nrPDB 28 3.1 2ZON-G nrPDB 28 4.1 CONVERGED! >2ORV-A nrPDB Length = 234 Score = 404 bits (1037), Expect = e-113, Method: Composition-based stats. Identities = 232/234 (99%), Positives = 232/234 (99%) Query: 1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR 60 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR Sbjct: 1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR 60 Query: 61 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI 120 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI Sbjct: 61 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI 120 Query: 121 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK 180 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK Sbjct: 121 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK 180 Query: 181 YHSVCRLCYFKKASGQPAGPDNKENCPVPGKPGEAVAARKLFAPQQILQCSPAN 234 YHSVCRLCYFKKASGQPAGPDN NCPVPGKPGEAVAARKLFAPQQILQCSPAN Sbjct: 181 YHSVCRLCYFKKASGQPAGPDNAANCPVPGKPGEAVAARKLFAPQQILQCSPAN 234 >1XBT-A nrPDB Length = 193 Score = 325 bits (833), Expect = 9e-90, Method: Composition-based stats. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR 60 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR Sbjct: 1 MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR 60 Query: 61 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI 120 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI Sbjct: 61 YSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVI 120 Query: 121 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK 180 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK Sbjct: 121 VAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADK 180 Query: 181 YHSVCRLCYFKKA 193 YHSVCRLCYFKKA Sbjct: 181 YHSVCRLCYFKKA 193 >2J87-A nrPDB Length = 177 Score = 277 bits (708), Expect = 3e-75, Method: Composition-based stats. Identities = 120/171 (70%), Positives = 138/171 (80%) Query: 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPA 78 G IQ+I+GPMFSGKSTEL+RRVRR+QIAQYKC+ IKY+ D RY + THD+N EAL A Sbjct: 4 GHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDNRYGTGLWTHDKNNFEALEA 63 Query: 79 CLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILN 138 L DV Q +VIGIDEGQFFPDIVEFCE MAN GK VIVAALDGTFQRKPF ILN Sbjct: 64 TKLCDVLQSITDFSVIGIDEGQFFPDIVEFCERMANEGKIVIVAALDGTFQRKPFNNILN 123 Query: 139 LVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCY 189 L+ L+E VVKLTAVCM+CF+EA+++KRLG E E+E+IGG D Y SVCR CY Sbjct: 124 LLILSEMVVKLTAVCMKCFKEASFSKRLGEETEIEIIGGNDMYQSVCRKCY 174 >5FUX-A nrPDB Length = 182 Score = 260 bits (664), Expect = 4e-70, Method: Composition-based stats. Identities = 88/178 (49%), Positives = 118/178 (66%), Gaps = 3/178 (1%) Query: 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEA- 75 G+I++I+GPMF+GK+TELMRRV+R + AQ C +IKY DTRYS +HD+ + A Sbjct: 2 HGRIELIIGPMFAGKTTELMRRVQRHKHAQRSCYIIKYTGDTRYSEGAITSHDQRALTAN 61 Query: 76 LPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 + L DV E VI +DEGQFFPD+ FC A++GK VIV+ALD + ++PF Sbjct: 62 VSVSNLHDVGDEWRKYDVIAVDEGQFFPDVAAFCSKAADSGKVVIVSALDADYLQEPFEE 121 Query: 136 ILNLVPLAESVVKLTAVCMECFR-EAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFKK 192 I LV A+SVVKL+AVCMEC +A++T R E +++GG+D Y SVCR CY K Sbjct: 122 ICLLVSRADSVVKLSAVCMECHNRKASFTYRTVKSDERKLVGGSDMYMSVCRSCYETK 179 >4UXH-A nrPDB Length = 184 Score = 256 bits (655), Expect = 4e-69, Method: Composition-based stats. Identities = 91/178 (51%), Positives = 121/178 (67%), Gaps = 3/178 (1%) Query: 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEAL 76 RG+I++I+GPMF+GK+TELMRRV+R A+ C VIKY+KDTRY + +HD+ + A Sbjct: 4 RGRIELIIGPMFAGKTTELMRRVKREIHARRSCFVIKYSKDTRYDEHNVASHDQLMLRAQ 63 Query: 77 PA-CLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 A L +V V+ IDEGQFF D+V+FC A+AGK V+V+ALDG ++RKPFG Sbjct: 64 AAVSQLTEVRDTWKRFDVLAIDEGQFFSDLVDFCNTAADAGKVVMVSALDGDYRRKPFGQ 123 Query: 136 ILNLVPLAESVVKLTAVCMECFR-EAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFKK 192 I LVP E+V KLTAVCM C A +T+R ++ E+IGGAD Y + CR CY K+ Sbjct: 124 ICELVPYCEAVDKLTAVCMMCHEQPACFTRRTVNVEQQELIGGADMYIATCRECYSKQ 181 >2B8T-A nrPDB Length = 223 Score = 250 bits (638), Expect = 5e-67, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 101/206 (49%), Gaps = 21/206 (10%) Query: 15 SKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTME 74 SK G I+ I GPMF+GK+ EL+RR+ R + A K LV K DTR S T Sbjct: 8 SKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SIRNIQSRTGT 64 Query: 75 ALPAC-------LLRDVAQEALG--VAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAAL 124 +LP+ +L + + VIGIDE QFF D I E +A G VI++ L Sbjct: 65 SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGL 124 Query: 125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYT------KRLGTEKEVEVIGGA 178 D F+ +PFG I L A+ + KLTA+C EC EA ++ K ++ IG Sbjct: 125 DKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQ 184 Query: 179 DKYHSVCRLCYFKKASGQPAGPDNKE 204 + Y +VCR + K +P N E Sbjct: 185 EFYSAVCR--HHHKVPNRPYLNSNSE 208 >2JA1-A nrPDB Length = 197 Score = 249 bits (637), Expect = 5e-67, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 102/180 (56%), Gaps = 9/180 (5%) Query: 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEALP 77 G I+VI G MFSGKS EL+RRVRR Q A+ +V K D RYS +H+ ++A+P Sbjct: 10 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVP 69 Query: 78 ACLLRDVAQEALG-VAVIGIDEGQFFP-DIVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 +D+ + + VI IDE QFF DIVE + +AN G VIVA LD F+ PFG Sbjct: 70 VSASKDIFEHITEELDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQ 129 Query: 136 ILNLVPLAESVVKLTAVCMECFREAAYTKRLG------TEKEVEVIGGADKYHSVCRLCY 189 + L+ +AE V KL AVC C A+ T+RL + + ++G ++ Y CR C+ Sbjct: 130 VPQLMAIAEHVTKLQAVCSVCGSPASRTQRLIDGEPAAFDDPIILVGASESYEPRCRHCH 189 >1XX6-A nrPDB Length = 191 Score = 249 bits (636), Expect = 7e-67, Method: Composition-based stats. Identities = 73/183 (39%), Positives = 101/183 (55%), Gaps = 9/183 (4%) Query: 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTME 74 K G ++VI+GPM+SGKS EL+RR+RR +IA+ K V K D RYS +H + Sbjct: 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQ 64 Query: 75 ALPACLLRDVAQE-ALGVAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGTFQRKP 132 A+ R++ + VI IDE QFF D IVE +A +G+ VI A LD F+ KP Sbjct: 65 AVAIKNSREILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFRGKP 124 Query: 133 FGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTE------KEVEVIGGADKYHSVCR 186 FG I L+ +AE V K+ A+C+ C A T+RL V +IG + Y + CR Sbjct: 125 FGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEARCR 184 Query: 187 LCY 189 C+ Sbjct: 185 KCH 187 >3E2I-A nrPDB Length = 219 Score = 247 bits (631), Expect = 3e-66, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 95/181 (52%), Gaps = 9/181 (4%) Query: 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALP 77 G I+ I G MFSGKS EL+RR+RR A+ K +V K A D RY +H+ N +EA+ Sbjct: 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAIN 87 Query: 78 ACLLRDVAQEA-LGVAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 ++ V VIGIDE QFF D IV E ++ G VIVA LD F+ +PF Sbjct: 88 ISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEP 147 Query: 136 ILNLVPLAESVVKLTAVCMECFREAAYTKRLGTE------KEVEVIGGADKYHSVCRLCY 189 + L+ ++E V KL AVC C ++ T+RL + ++G + Y CR + Sbjct: 148 MPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHH 207 Query: 190 F 190 Sbjct: 208 I 208 >2QPO-A nrPDB Length = 184 Score = 214 bits (546), Expect = 2e-56, Method: Composition-based stats. Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 12/181 (6%) Query: 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEAL- 76 G++ VI GPM+SGK+TEL+ V +++ + K V K D+RY S+ +H N +EA Sbjct: 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHV 62 Query: 77 ---PACLLRDVAQEALGVAVIGIDEGQFF-PDIVEFCEAMANAGKTVIVAALDGTFQRKP 132 P + + + ++ GV IDE QFF P + E + + + G V A LD T ++ P Sbjct: 63 IERPEEMRKYIEEDTRGVF---IDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNP 119 Query: 133 FGAILNLVPLAESVVKLTAVCMECF--REAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 190 F L+ LA++V+K AVC C K G E+E++ +GG +KY +VCR CY Sbjct: 120 FETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEID-VGGQEKYIAVCRDCYN 178 Query: 191 K 191 Sbjct: 179 T 179 >3JC8-Ba nrPDB Length = 566 Score = 35.4 bits (80), Expect = 0.024, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 24/193 (12%) Query: 23 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACL 80 ++ GP SGK+T L + + + ++ + HD + A L Sbjct: 318 LVTGPTGSGKTTTLYSALSSLNGLDTNICTAEDPVEFNFAGINQVQMHDDIGLN-FAAAL 376 Query: 81 LRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQR---------- 130 + Q+ +I I E + F + E A G V+ Sbjct: 377 RSFLRQDP---DIIMIGEIRDF-ETAEIGVKAALTGHLVLSTLHTNDAPGTVSRLLNMGI 432 Query: 131 KPFGAILNL-VPLAESVVKLTAVCMECFREAAYTKR---LGTEKEVEVIGGADKYHSV-C 185 +PF +L + LA+ + + +C C + A + + IG Y V C Sbjct: 433 EPFLVTASLNLILAQRLARR--LCPACKKPAENVDEQALIDAGVPPDKIGTFTMYEKVGC 490 Query: 186 RLCYFKKASGQPA 198 R C + G+ A Sbjct: 491 RDCNDRGYRGRVA 503 >1Z1N-X nrPDB Length = 560 Score = 35.0 bits (79), Expect = 0.028, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 145 SVVKLTAVCMECFREA---AYTKRLGTEKEVEVIGGADKYHSVCRLCYFKKASGQPAGPD 201 ++ K+ C C E K T A++YH+ C C+ K P P Sbjct: 71 ALEKMAKDCTSCHVETEGKLSFKFARTVDPTSKNAMAEQYHANCMACHEKVVGSYPTAPQ 130 Query: 202 NKE--NCPV-PGKPGEAVAAR 219 E C V PG G V + Sbjct: 131 AAECKRCHVGPGVEGATVTPK 151 >2ZOO-A nrPDB Length = 442 Score = 31.9 bits (71), Expect = 0.23, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 15/37 (40%) Query: 161 AYTKRLGTEKEVEVIGGADKYHSVCRLCYFKKASGQP 197 +TK K+ ++ G Y + C C+ G P Sbjct: 326 TFTKITANNKDEQIRFGQRVYEANCMACHQANGEGIP 362 >5ZFQ-A nrPDB Length = 390 Score = 30.4 bits (67), Expect = 0.68, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 4 INLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQY-KCLVIKYAKDTRYS 62 + LP V+ K RG I ++ GP SGKST L + + ++ + I+ + + Sbjct: 135 LGLPVVVKELAEKPRGLI-LVTGPTGSGKSTTLAAIIDKINTERHDHIVTIEDPIEYLHP 193 Query: 63 SSFCTHDRNTMEALPAC---LLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGK 117 C ++ + A L+ + ++ V+ + E + I E +A G Sbjct: 194 HKSCVVNQREVGADTKSFKNALKYILRQ--DPDVVLVGELRDLETI-EAALTLAETGH 248 >3KJP-A nrPDB Length = 299 Score = 30.4 bits (67), Expect = 0.68, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%) Query: 53 IKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAM 112 I ++Y +F T D +EAL ++ + + + Q+F + Sbjct: 114 IIPRTSSKYF-NFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKA 172 Query: 113 ANAGKTVIVAALDGTFQRKPF 133 G + ++ DGT R PF Sbjct: 173 EVDGASFLLKVWDGT--RTPF 191 >3QVT-A nrPDB Length = 392 Score = 30.0 bits (66), Expect = 0.90, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 15/87 (17%) Query: 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACL 80 ++ L PMF+ ++ E++ + + Y V+ A+D + S + D+ Sbjct: 233 VKTTLAPMFAYRNMEVVGWMSYNILGDYDGKVLS-ARDNKESK-VLSKDK---------- 280 Query: 81 LRDVAQEALGVAVIGIDEGQFFPDIVE 107 V ++ LG + I E Q+FP +V+ Sbjct: 281 ---VLEKMLGYSPYSITEIQYFPSLVD 304 >3CAR-A nrPDB Length = 103 Score = 29.2 bits (64), Expect = 1.5, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 9/54 (16%) Query: 142 LAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFKKASG 195 LAE + C +C E++ + G D YH C C+ K+A G Sbjct: 48 LAEDEDSVGTPCSDCHA---------LEQDGDTPGLQDAYHQQCWGCHEKQAKG 92 >3CCF-A nrPDB Length = 279 Score = 29.2 bits (64), Expect = 1.6, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 80 LLRDVAQEALG-VAVIGIDEGQ-----FFPDIVEFCEAMANAGKTVIVAAL 124 ++ + + + +GI Q +FP I E+ + G V AAL Sbjct: 159 NIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAAL 209 >1MG3-D nrPDB Length = 155 Score = 29.2 bits (64), Expect = 1.6, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%) Query: 168 TEKEVEVIGGADKYHSVCRLCYFKKASGQ--PAGPD 201 E + + Y +C C+ A G+ P D Sbjct: 40 NEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLND 75 >3PIH-A nrPDB Length = 916 Score = 29.2 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 72 TMEALPACLLRDVAQEALGVAVIGIDE---GQFFPD---IVEFCEAMANAGKTVIV 121 EA L ++ + G + +DE G F D +VE + + G TVIV Sbjct: 808 GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 >5NV6-A nrPDB Length = 683 Score = 28.8 bits (63), Expect = 1.9, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%) Query: 172 VEVIGGADKYHSVCRLCYFKKASGQPAGPDNKENCP----VPGKPG 213 +VIG KY + C+ Y +K G+ E CP VPG+ G Sbjct: 52 QKVIGTNRKYFTNCKQWYQRKICGKSTVIS-YECCPGYEKVPGEKG 96 >1XP8-A nrPDB Length = 366 Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Query: 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI--KYAKDTRY--------SSSFCT 67 RG+I I GP GK+T + V + Q A C I ++A D Y + Sbjct: 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVS 132 Query: 68 HDRNTMEALPACLL 81 N +AL L Sbjct: 133 QPDNGEQALEIMEL 146 >2ZON-G nrPDB Length = 87 Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%) Query: 177 GADKYHSVCRLCYFKKASGQPAGPDNKENCPVPGKPGEAVAARKL 221 G Y S C +C+ + P D + P + +A+ A L Sbjct: 12 GEKLYRSACVVCHASGVANAPKLGDKQAWAPFLAQGADALLATVL 56 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.137 0.396 Lambda K H 0.267 0.0415 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,312,864 Number of Sequences: 36641 Number of extensions: 352030 Number of successful extensions: 1065 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 996 Number of HSP's gapped (non-prelim): 47 length of query: 234 length of database: 10,336,785 effective HSP length: 94 effective length of query: 140 effective length of database: 6,892,531 effective search space: 964954340 effective search space used: 964954340 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 57 (26.5 bits)