BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P04080 (98 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4N6V-2 nrPDB 188 5e-49 1CYV-A nrPDB 112 4e-26 5ZC1-A nrPDB 60 2e-10 1EQK-A nrPDB 31 0.13 5O46-B nrPDB 28 0.60 3SKY-A nrPDB 28 0.82 4N6U-A nrPDB 27 1.4 4IT7-A nrPDB 27 1.4 4N6L-A nrPDB 27 1.8 2PLM-A nrPDB 26 4.8 2W9P-A nrPDB 25 5.1 5WX5-A nrPDB 25 5.3 4ZM8-A nrPDB 25 6.3 1STZ-A nrPDB 25 7.7 4LZI-A nrPDB 25 7.8 4LGM-A nrPDB 25 9.3 4RNU-A nrPDB 25 9.9 >4N6V-2 nrPDB Length = 91 Score = 188 bits (477), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 91/91 (100%), Positives = 91/91 (100%) Query: 8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL 67 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL Sbjct: 1 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL 60 Query: 68 RVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98 RVFQSLPHENKPLTLSNYQTNKAKHDELTYF Sbjct: 61 RVFQSLPHENKPLTLSNYQTNKAKHDELTYF 91 >1CYV-A nrPDB Length = 98 Score = 112 bits (280), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 52/98 (53%), Positives = 70/98 (71%) Query: 1 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG 60 M+ G S +PAT E Q I D+V+ QLEEK N+ + +AV +K+QVVAGTNY+IKV G Sbjct: 1 MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG 60 Query: 61 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98 D ++HL+VF+SLP +N+ L L+ YQ +K K DELT F Sbjct: 61 DNKYLHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF 98 >5ZC1-A nrPDB Length = 136 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 2 MCGAPSATQPATAETQHIADQVRSQ-LEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG 60 +CG SA + TA+ + + V Q L K + V +QVVAGTNYF KV V Sbjct: 39 ICGGISAARIPTADEKKKLEPVLLQSLYAHLGSKPTSAEVVLVATQVVAGTNYFAKVKVN 98 Query: 61 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98 ++ ++H RV++ LP L L + Q NK D L YF Sbjct: 99 NDHYIHTRVYEQLPCYGGALELHSVQMNKTDTDPLDYF 136 >1EQK-A nrPDB Length = 102 Score = 30.8 bits (68), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 4 GAP--SATQPATAETQ-HIADQVRSQLEE---KENKKFPVFKAVSFKSQVVAGTNYFIKV 57 G P +P E H+ D R + E K N K VS K QVVAGT Y+ + Sbjct: 5 GGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTI 64 Query: 58 HVGDED 63 V + D Sbjct: 65 EVKEGD 70 >5O46-B nrPDB Length = 120 Score = 28.5 bits (62), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 9 TQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFV 65 P E H A + SQ+E + N + +S +SQV+AG +Y +K+ V + V Sbjct: 14 VDPRYKEWAHFA--ISSQVENRTNFD-TLMTLISVESQVIAGVDYKLKMKVAESTCV 67 >3SKY-A nrPDB Length = 274 Score = 28.1 bits (61), Expect = 0.82, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Query: 19 IADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHE 76 +AD++R + E +K KA+ K ++ G N F+ V +E + + LPHE Sbjct: 141 LADRIRPESREAISK----LKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHE 194 >4N6U-A nrPDB Length = 79 Score = 27.3 bits (59), Expect = 1.4, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 30 KENKKFPVFKAVSFKSQVVAGTNYFIKVHVGD 61 KEN + V K QVVAGT Y++ + D Sbjct: 20 KENALLEFVRVVKAKEQVVAGTMYYLTLEAKD 51 >4IT7-A nrPDB Length = 113 Score = 27.3 bits (59), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Query: 17 QHIADQVRSQLEEKENKKF--PVFKAVSFKSQVVAGTNYFIKVHV 59 Q +A + ++ N F + K +S K+QVVAGTN +++ + Sbjct: 20 QALAGKALQRINAASNDLFQQTIVKVISAKTQVVAGTNTVLELLI 64 >4N6L-A nrPDB Length = 131 Score = 26.9 bits (58), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 41 VSFKSQVVAGTNYFIKVHVGDEDFVHLRV 69 + +SQ+VAG YF+ + +G D RV Sbjct: 49 IKAQSQLVAGIKYFLTMEMGSTDCRKTRV 77 >2PLM-A nrPDB Length = 406 Score = 25.8 bits (55), Expect = 4.8, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 17/26 (65%) Query: 68 RVFQSLPHENKPLTLSNYQTNKAKHD 93 RVF + N P+T+ Y+T+K ++D Sbjct: 185 RVFDTAKSLNAPVTIHLYETSKEEYD 210 >2W9P-A nrPDB Length = 87 Score = 25.4 bits (54), Expect = 5.1, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 4 GAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDE 62 G + P + Q +A +K+N + ++ K QVVAG Y+I + D+ Sbjct: 1 GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDD 59 >5WX5-A nrPDB Length = 411 Score = 25.4 bits (54), Expect = 5.3, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 36 PVFKAVSFKSQVVAGTNYFIKVHV 59 P+F+ VS + V GT +IK H+ Sbjct: 253 PLFQVVSCAERAVPGTQDYIKAHL 276 >4ZM8-A nrPDB Length = 114 Score = 25.4 bits (54), Expect = 6.3, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 37 VFKAVSFKSQVVAGTNYFIKVHVGD 61 V + V ++QVVAGTNY + + V + Sbjct: 43 VAEVVKVETQVVAGTNYRLTLKVAE 67 >1STZ-A nrPDB Length = 338 Score = 25.0 bits (53), Expect = 7.7, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 19 IADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENK 78 I ++ ++ K+ +KF VF FK + G+ Y V D H RVF+ + + Sbjct: 271 ITVRIGREIGRKKLEKFAVFSGKYFKGESPIGSVYLFTSKVTKYDRNH-RVFEYILNR-- 327 Query: 79 PLTLSNYQTNKAK 91 LS Y T+ ++ Sbjct: 328 ---LSEYFTSTSR 337 >4LZI-A nrPDB Length = 282 Score = 25.0 bits (53), Expect = 7.8, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 24/54 (44%) Query: 2 MCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFI 55 + G + P E Q +A +KEN + ++ K Q+VAG Y+I Sbjct: 98 LGGIINVPFPNNPEFQDLARFAVQDYNKKENAHLEFVENLNVKEQLVAGMLYYI 151 Score = 25.0 bits (53), Expect = 8.1, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 1 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG 60 ++ G P E Q +A +KEN + ++ K Q+VAG Y+I + Sbjct: 191 IIGGFTDVPFPNNPEFQDLARFAVQDYNKKENAHLEYVENLNVKEQLVAGMIYYITLVAT 250 Query: 61 D 61 D Sbjct: 251 D 251 >4LGM-A nrPDB Length = 295 Score = 24.6 bits (52), Expect = 9.3, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 39 KAVSFKSQVVAGTNYFIKVHVGDEDFV---HLRVFQSLPHENKPLTLSNYQTNKAKHD 93 K+ ++K V+ TN ++ DE F+ R++ LP + L+L Y T+K K D Sbjct: 161 KSENYKVYVIGATNKPWRL---DEAFLRRFQKRIYVPLPDYEQRLSLFKYYTSKIKLD 215 >4RNU-A nrPDB Length = 400 Score = 24.6 bits (52), Expect = 9.9, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 43 FKSQVVAGTNYFIKVHVGDEDFVHLRVFQSL 73 FK Q + TN F + +G+ + +H V L Sbjct: 105 FKPQALGDTNLFKPIKIGNNELLHRAVIPPL 135 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5ZC1-A nrPDB 151 9e-38 1CYV-A nrPDB 145 3e-36 4N6V-2 nrPDB 136 2e-33 Sequences not found previously or not previously below threshold: 4IT7-A nrPDB 37 0.002 4ZM8-A nrPDB 31 0.11 5LVV-A nrPDB 31 0.15 1EQK-A nrPDB 30 0.27 3S67-A nrPDB 29 0.39 3LH4-A nrPDB 29 0.60 2W9P-A nrPDB 28 0.87 4N6U-A nrPDB 28 1.0 5O46-B nrPDB 28 1.2 4LZI-A nrPDB 27 1.4 4RNX-A nrPDB 27 1.4 4RNU-A nrPDB 27 1.4 4GBU-A nrPDB 27 1.6 2L4V-A nrPDB 27 2.2 1ROA-A nrPDB 27 2.3 3L0R-A nrPDB 26 3.5 4N6L-A nrPDB 25 5.0 >5ZC1-A nrPDB Length = 136 Score = 151 bits (380), Expect = 9e-38, Method: Composition-based stats. Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 2 MCGAPSATQPATAETQHIADQVRSQ-LEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG 60 +CG SA + TA+ + + V Q L K + V +QVVAGTNYF KV V Sbjct: 39 ICGGISAARIPTADEKKKLEPVLLQSLYAHLGSKPTSAEVVLVATQVVAGTNYFAKVKVN 98 Query: 61 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98 ++ ++H RV++ LP L L + Q NK D L YF Sbjct: 99 NDHYIHTRVYEQLPCYGGALELHSVQMNKTDTDPLDYF 136 >1CYV-A nrPDB Length = 98 Score = 145 bits (367), Expect = 3e-36, Method: Composition-based stats. Identities = 52/98 (53%), Positives = 70/98 (71%) Query: 1 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG 60 M+ G S +PAT E Q I D+V+ QLEEK N+ + +AV +K+QVVAGTNY+IKV G Sbjct: 1 MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG 60 Query: 61 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98 D ++HL+VF+SLP +N+ L L+ YQ +K K DELT F Sbjct: 61 DNKYLHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF 98 >4N6V-2 nrPDB Length = 91 Score = 136 bits (343), Expect = 2e-33, Method: Composition-based stats. Identities = 91/91 (100%), Positives = 91/91 (100%) Query: 8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL 67 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL Sbjct: 1 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL 60 Query: 68 RVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98 RVFQSLPHENKPLTLSNYQTNKAKHDELTYF Sbjct: 61 RVFQSLPHENKPLTLSNYQTNKAKHDELTYF 91 >4IT7-A nrPDB Length = 113 Score = 37.0 bits (84), Expect = 0.002, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 2 MCGAPSATQPATAETQHIADQVRSQLEEKENKKF--PVFKAVSFKSQVVAGTN 52 + G S + Q +A + ++ N F + K +S K+QVVAGTN Sbjct: 5 VPGGFSTKDVNDPKIQALAGKALQRINAASNDLFQQTIVKVISAKTQVVAGTN 57 >4ZM8-A nrPDB Length = 114 Score = 31.2 bits (69), Expect = 0.11, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 36 PVFKAVSFKSQVVAGTNYFIKVHVGDE 62 V + V ++QVVAGTNY + + V + Sbjct: 42 TVAEVVKVETQVVAGTNYRLTLKVAES 68 >5LVV-A nrPDB Length = 749 Score = 30.8 bits (68), Expect = 0.15, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%) Query: 35 FPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKP 79 F+ + GTN+ +KV F+ L +P K Sbjct: 286 PDKFEVFCYALSPDDGTNFRVKVMAEANHFIDL---SQIPCNGKA 327 >1EQK-A nrPDB Length = 102 Score = 29.7 bits (65), Expect = 0.27, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 18 HIADQVRSQLEEKENKKFPVFK---AVSFKSQVVAGTNYF--IKVHVGDEDFVH 66 H+ D R + E K + + VS K QVVAGT Y+ I+V GD ++ Sbjct: 22 HLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLY 75 >3S67-A nrPDB Length = 120 Score = 29.3 bits (64), Expect = 0.39, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 2 MCGAPSATQPATAETQHIADQVRSQLEEKENKKFPV--FKAVSFKSQVVAGTNYFIKVHV 59 + G P + D + + N + + V + Q+ AG NYF+ V + Sbjct: 9 LVGGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIPAGVNYFLDVEL 68 Query: 60 G 60 G Sbjct: 69 G 69 >3LH4-A nrPDB Length = 115 Score = 28.5 bits (62), Expect = 0.60, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 18/44 (40%) Query: 36 PVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKP 79 V + + ++Q VAGTNY + + V + + + Sbjct: 43 TVVEVLKVETQTVAGTNYRLTLKVAESTCELTSTYNKDTCQANA 86 >2W9P-A nrPDB Length = 87 Score = 28.1 bits (61), Expect = 0.87, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 4 GAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDE 62 G + P + Q +A +K+N + ++ K QVVAG Y+I + D+ Sbjct: 1 GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDD 59 >4N6U-A nrPDB Length = 79 Score = 27.7 bits (60), Expect = 1.0, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 15 ETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGD 61 E + +A + +KEN + V K QVVAGT Y++ + D Sbjct: 5 EIEELARFAVDEHNKKENALLEFVRVVKAKEQVVAGTMYYLTLEAKD 51 >5O46-B nrPDB Length = 120 Score = 27.7 bits (60), Expect = 1.2, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 23 VRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDE 62 + SQ+E + N + +S +SQV+AG +Y +K+ V + Sbjct: 26 ISSQVENRTNFD-TLMTLISVESQVIAGVDYKLKMKVAES 64 >4LZI-A nrPDB Length = 282 Score = 27.4 bits (59), Expect = 1.4, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 4 GAPSATQ-PATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGD 61 G + P + E Q + Q + +N + ++ K QVVAG Y+I D Sbjct: 5 GGFTEVPFPNSPEFQDLTRFAVHQYNKDQNAHLEFVENLNVKKQVVAGMLYYITFAATD 63 Score = 27.4 bits (59), Expect = 1.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%) Query: 11 PATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGD 61 P E Q +A +KEN + ++ K Q+VAG Y+I + D Sbjct: 201 PNNPEFQDLARFAVQDYNKKENAHLEYVENLNVKEQLVAGMIYYITLVATD 251 Score = 26.2 bits (56), Expect = 3.2, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%) Query: 4 GAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGD 61 G + P E Q +A +KEN + ++ K Q+VAG Y+I + D Sbjct: 100 GIINVPFPNNPEFQDLARFAVQDYNKKENAHLEFVENLNVKEQLVAGMLYYITLVAID 157 >4RNX-A nrPDB Length = 400 Score = 27.4 bits (59), Expect = 1.4, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 43 FKSQVVAGTNYFIKVHVGDEDFVHLRVFQSL 73 FK Q + TN F + +G+ + +H V L Sbjct: 254 FKPQALGDTNLFKPIKIGNNELLHRAVIPPL 284 >4RNU-A nrPDB Length = 400 Score = 27.4 bits (59), Expect = 1.4, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 43 FKSQVVAGTNYFIKVHVGDEDFVHLRVFQSL 73 FK Q + TN F + +G+ + +H V L Sbjct: 105 FKPQALGDTNLFKPIKIGNNELLHRAVIPPL 135 >4GBU-A nrPDB Length = 400 Score = 27.4 bits (59), Expect = 1.6, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 43 FKSQVVAGTNYFIKVHVGDEDFVHLRVFQSL 73 FK Q + TN F + +G+ + +H V L Sbjct: 7 FKPQALGDTNLFKPIKIGNNELLHRAVIPPL 37 >2L4V-A nrPDB Length = 135 Score = 27.0 bits (58), Expect = 2.2, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Query: 2 MCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFK---AVSFKSQVVAGTNYFIKVH 58 + G D R + E NK + + V K QVV+G +++ V Sbjct: 42 IMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVE 101 Query: 59 VGD---EDFVHLRVFQSL 73 V D + +V++ + Sbjct: 102 VNDAGKKKLYEAKVWEQV 119 >1ROA-A nrPDB Length = 122 Score = 26.6 bits (57), Expect = 2.3, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%) Query: 2 MCGAPSATQPATAETQHIADQVRSQLEEKENKK---FPVFKAVSFKSQVVAGTNYFIKVH 58 + G AT Q D S+ + NK + ++ Q+V G NY+ V Sbjct: 10 LAGGIHATDLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVK 69 Query: 59 VG 60 G Sbjct: 70 FG 71 >3L0R-A nrPDB Length = 115 Score = 26.2 bits (56), Expect = 3.5, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%) Query: 2 MCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG 60 + G + P A +A S E V ++QVVAG NY + + + Sbjct: 3 IPGGWTRQDPTEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEIS 61 >4N6L-A nrPDB Length = 131 Score = 25.4 bits (54), Expect = 5.0, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 40 AVSFKSQVVAGTNYFIKVHVGDEDFVHLRV 69 + +SQ+VAG YF+ + +G D RV Sbjct: 48 IIKAQSQLVAGIKYFLTMEMGSTDCRKTRV 77 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.132 0.329 Lambda K H 0.267 0.0398 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,098,490 Number of Sequences: 36641 Number of extensions: 94418 Number of successful extensions: 305 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 260 Number of HSP's gapped (non-prelim): 53 length of query: 98 length of database: 10,336,785 effective HSP length: 66 effective length of query: 32 effective length of database: 7,918,479 effective search space: 253391328 effective search space used: 253391328 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 52 (24.7 bits)