BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P03962 (267 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3GDT-A nrPDB 548 e-157 3BVJ-A nrPDB 249 7e-67 3G3M-A nrPDB 249 8e-67 2CZE-A nrPDB 40 0.001 3UWQ-A nrPDB 40 0.001 3TR2-A nrPDB 39 0.003 1EIX-A nrPDB 35 0.031 4LUJ-A nrPDB 35 0.046 4MUZ-A nrPDB 34 0.078 3RU6-A nrPDB 33 0.14 4DBE-A nrPDB 28 3.0 1CR6-A nrPDB 28 3.6 2TMD-A nrPDB 28 4.9 6GSZ-A nrPDB 28 4.9 2IPC-A nrPDB 28 5.4 >3GDT-A nrPDB Length = 267 Score = 548 bits (1412), Expect = e-157, Method: Compositional matrix adjust. Identities = 266/267 (99%), Positives = 267/267 (100%) Query: 1 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT 60 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT Sbjct: 1 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT 60 Query: 61 HVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITN 120 HVDILTDFSMEGTVKPLKALSAKYNFLLFE+RKFADIGNTVKLQYSAGVYRIAEWADITN Sbjct: 61 HVDILTDFSMEGTVKPLKALSAKYNFLLFENRKFADIGNTVKLQYSAGVYRIAEWADITN 120 Query: 121 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI 180 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI Sbjct: 121 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI 180 Query: 181 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK Sbjct: 181 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240 Query: 241 GRDAKVEGERYRKAGWEAYLRRCGQQN 267 GRDAKVEGERYRKAGWEAYLRRCGQQN Sbjct: 241 GRDAKVEGERYRKAGWEAYLRRCGQQN 267 >3BVJ-A nrPDB Length = 312 Score = 249 bits (637), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 129/250 (51%), Positives = 172/250 (68%), Gaps = 9/250 (3%) Query: 16 PVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVK 75 PVA+KL +M +K+TNLC S DV +ELL+L +ALGP IC+LKTHVDIL DF+++ +K Sbjct: 70 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD-VMK 128 Query: 76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ 135 L L+ + FL+FEDRKFADIGNTVK QY G+++IA WAD+ NAH V G G+V GL++ Sbjct: 129 ELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQE 188 Query: 136 AAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGY 195 + RG L++AE+S GSLATG+YT+ V +A+ +FV+GFI+ + + E Sbjct: 189 VGLPLH---RGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPE-- 243 Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGRDAKVEGERYRKA 254 +L +TPGV L+ GD LGQQY + +V+ GSDIIIVGRG+ + D E YRKA Sbjct: 244 -FLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAA-DRLEAAEMYRKA 301 Query: 255 GWEAYLRRCG 264 WEAYL R G Sbjct: 302 AWEAYLSRLG 311 >3G3M-A nrPDB Length = 279 Score = 249 bits (636), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 129/250 (51%), Positives = 172/250 (68%), Gaps = 9/250 (3%) Query: 16 PVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVK 75 PVA+KL +M +K+TNLC S DV +ELL+L +ALGP IC+LKTHVDIL DF+++ +K Sbjct: 37 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD-VMK 95 Query: 76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ 135 L L+ + FL+FEDRKFADIGNTVK QY G+++IA WAD+ NAH V G G+V GL++ Sbjct: 96 ELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQE 155 Query: 136 AAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGY 195 + RG L++AE+S GSLATG+YT+ V +A+ +FV+GFI+ + + E Sbjct: 156 VGLPLH---RGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPE-- 210 Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGRDAKVEGERYRKA 254 +L +TPGV L+ GD LGQQY + +V+ GSDIIIVGRG+ + D E YRKA Sbjct: 211 -FLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAA-DRLEAAEMYRKA 268 Query: 255 GWEAYLRRCG 264 WEAYL R G Sbjct: 269 AWEAYLSRLG 278 >2CZE-A nrPDB Length = 208 Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 29/212 (13%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91 + +LDV + +++ +++ I ++K + ++ + V ++ L + + D Sbjct: 2 IVLALDVYEGERAIKIAKSVKDYISMIKVNWPLI----LGSGVDIIRRLKEETGVEIIAD 57 Query: 92 RKFADIGNTVKL----QYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGL 147 K ADI NT +L + AG AD H VG V +K+ E + Sbjct: 58 LKLADIPNTNRLIARKVFGAG-------ADYVIVHTFVGRDSVMAVKELGE--------I 102 Query: 148 LMLAELSCKGSLA-TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGL 206 +M+ E+S G+L T +++A + F G IA G R E ++ G+ Sbjct: 103 IMVVEMSHPGALEFINPLTDRFIEVANEIEPF--GVIAP---GTRPERIGYIRDRLKEGI 157 Query: 207 DDKGDALGQQYRTVDDVVSTGSDIIIVGRGLF 238 +G Q D V G+D IIVGR ++ Sbjct: 158 KILAPGIGAQGGKAKDAVKAGADYIIVGRAIY 189 >3UWQ-A nrPDB Length = 255 Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 26/228 (11%) Query: 23 NIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA 82 N M++ + + +LD + L V+ + P C LK ++ T F + V+ L Sbjct: 23 NAMNDPK--VIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPD-FVRELH---- 75 Query: 83 KYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTK 142 K F +F D KF DI NT A + W + N H G +++ ++ E K Sbjct: 76 KRGFSVFLDLKFHDIPNTCSKAVKAAA-ELGVW--MVNVHASGGERMMAASREILEPYGK 132 Query: 143 EPRGLLM---------LAELSCKGSL-ATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGR 191 E R LL+ A+L G L A ++ + K+ D V+ + + + Sbjct: 133 E-RPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQ 191 Query: 192 DEGYDWLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGL 237 G ++ ++TPG+ G G Q R T +++GSD +++GR + Sbjct: 192 HLGREFKLVTPGI--RPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPI 237 >3TR2-A nrPDB Length = 239 Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 23/228 (10%) Query: 23 NIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA 82 N M + + ++D T ++ + L P++C LK + T + V+ L Sbjct: 2 NAMEKPDPKVIVAIDAGTVEQARAQINPLTPELCHLKIGSILFTRYG-PAFVEEL----M 56 Query: 83 KYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTK 142 + + +F D KF DI TV A V + W + N H G ++ + A + +T Sbjct: 57 QKGYRIFLDLKFYDIPQTVAGACRA-VAELGVW--MMNIHISGGRTMMETVVNALQSITL 113 Query: 143 EPRGLLMLAEL--SCKGS-LATGEYTKGTVDI-------AKSDK-DFVIGFIAQRDMGGR 191 + + LL+ + S GS L T + DI AKS D V+ + + + Sbjct: 114 KEKPLLIGVTILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAGLDGVVCSAQEAALLRK 173 Query: 192 DEGYDWLIMTPGVGL--DDKGDALGQQYRTVDDVVSTGSDIIIVGRGL 237 ++L++TPG+ L D+KGD ++ T + GSD +++GR + Sbjct: 174 QFDRNFLLVTPGIRLETDEKGDQ--KRVMTPRAAIQAGSDYLVIGRPI 219 >1EIX-A nrPDB Length = 245 Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 22/218 (10%) Query: 30 TNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLF 89 + + +LD + L V+ + P+ C LK ++ T F + V+ L+ + F +F Sbjct: 15 SPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQ-FVRELQ----QRGFDIF 69 Query: 90 EDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLM 149 D KF DI NT A + W + N H G +++ ++A K+ L+ Sbjct: 70 LDLKFHDIPNTAA-HAVAAAADLGVW--MVNVHASGGARMMTAAREALVPFGKDAPLLIA 126 Query: 150 LAELSCKG---------SLATGEYTKGTVDIA-KSDKDFVIGFIAQRDMGGRDEGYDWLI 199 + L+ +L+ +Y + + K D V+ + + G ++ + Sbjct: 127 VTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKL 186 Query: 200 MTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGR 235 +TPG+ +G G Q R T + +S G D +++GR Sbjct: 187 VTPGI--RPQGSEAGDQRRIMTPEQALSAGVDYMVIGR 222 >4LUJ-A nrPDB Length = 233 Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 109/229 (47%), Gaps = 30/229 (13%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91 L +LDV L++VE + + +K ++ E +K +K L K + D Sbjct: 24 LMLALDVLDRDRALKIVEDVKDYVDAIKVGYPLVLSTGTE-IIKEIKKLCNKE---VIAD 79 Query: 92 RKFADIGNTVKLQYSAGVYRIA-EWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLML 150 K ADI T + + +I ++AD HG VG V ++ A+++ K+ ++M+ Sbjct: 80 FKVADIPAT-----NEKIAKITLKYADGIIVHGFVGEDSVKAVQDVAKKLNKK---VIMV 131 Query: 151 AELSCKGSLATGEYTKGTVD----IAKSDKDFVIGFIAQRDMGGRD--EGYDWLIMTPGV 204 E+S G++ ++ + D +AK K I + R ++ E + ++TPGV Sbjct: 132 TEMSHPGAV---QFLQPIADKLSEMAKKLKVDAIVAPSTRPERLKEIKEIAELPVITPGV 188 Query: 205 GLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRK 253 G A G + + +++ +D +IVGR ++ + ++ K E ++Y++ Sbjct: 189 G------AQGGKIEDILNILDE-NDYVIVGRAIY-QSQNPKEEAKKYKE 229 >4MUZ-A nrPDB Length = 229 Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 42/238 (17%) Query: 26 HEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYN 85 H KQ L +LDV ++ +E+ + + + +K + ++ + G +K L + Sbjct: 20 HMKQ--LILALDVMDGEKAMEIAKKVAEHVDRIKVNYPLVLSAGV-GIMKRLSEIKP--- 73 Query: 86 FLLFEDRKFADIGNTVKLQYSAGVYRIA--EWADITNAHGVVGPGIVSGLKQAAEEVTKE 143 + D K AD+ T L + RIA A+ HG VG + + + AEE + Sbjct: 74 --VIADFKIADVPYTSSL-----IARIAFENSAESVIVHGFVGSDTLREVCRVAEEFGGK 126 Query: 144 PRGLLMLAELSCKGSLATGEYTKGTVD---IAKSDKDFVIGFIA-----QRDMGGRDEGY 195 + + ELS G GE V + K+ + G IA +R R Sbjct: 127 ---VYAVTELSSPG----GEEFMSAVSLKIVEKAKEAGCHGLIAPSTRIERLREIRKAAG 179 Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRK 253 D I+ PG+G KG +Y +D IIVGRG++A G A+ E + R+ Sbjct: 180 DMEILCPGIG-AQKGSIEAVKY----------ADGIIVGRGIYASGNPAE-EARKLRR 225 >3RU6-A nrPDB Length = 303 Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 19/217 (8%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91 LC +LD+ T +E L+L + L LK L + +G K ++ L +F +F D Sbjct: 27 LCVALDLSTKEECLQLAKELKNLDIWLKVG---LRAYLRDG-FKFIEELKKVDDFKIFLD 82 Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151 KF DI NT+ V ++ D+ N H G + + + +K P L + A Sbjct: 83 LKFHDIPNTMA-DACEEVSKLG--VDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSA 139 Query: 152 ELSCKG----SLATGEYTKGTVDIAK----SDKDFVIGFIAQRDMGGRDEGYDWLIMTPG 203 S S+ + + ++ +K + D ++ + + ++L +TPG Sbjct: 140 LTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKKIKEHTSSNFLTLTPG 199 Query: 204 VGLDDKGDALGQQYRTVDDVVS--TGSDIIIVGRGLF 238 + G+ Q R + ++ SD I+VGR ++ Sbjct: 200 IR--PFGETNDDQKRVANLAMARENLSDYIVVGRPIY 234 >4DBE-A nrPDB Length = 222 Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 19/153 (12%) Query: 91 DRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLML 150 D K ADIG +K + V R++ +A+ AH +G + L + + + L ++ Sbjct: 59 DFKLADIGYIMK----SIVERLS-FANSFIAHSFIG--VKGSLDELKRYLDANSKNLYLV 111 Query: 151 AELSCKG-SLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWL-IMTPGVGLDD 208 A +S +G S +Y K + S K V+G + ++ + I++PG+G Sbjct: 112 AVMSHEGWSTLFADYIKNVIR-EISPKGIVVGGTKLDHITQYRRDFEKMTIVSPGMG--S 168 Query: 209 KGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKG 241 +G + G D V G+D I+GR ++ G Sbjct: 169 QGGSYG-------DAVCAGADYEIIGRSIYNAG 194 >1CR6-A nrPDB Length = 554 Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 12/72 (16%) Query: 49 EALGPKICLLKTHVDILTDFSMEGTVKP--------LKALSAKYNFLLFEDRKFADIGNT 100 ++L +C L H D L + G +KP L L AK N ++F D D G+ Sbjct: 134 DSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPNEVVFLD----DFGSN 189 Query: 101 VKLQYSAGVYRI 112 +K G+ I Sbjct: 190 LKPARDMGMVTI 201 >2TMD-A nrPDB Length = 729 Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 17/25 (68%) Query: 212 ALGQQYRTVDDVVSTGSDIIIVGRG 236 ALGQ+ T DDV+ G+D +I+ G Sbjct: 464 ALGQKPMTADDVLQYGADKVIIATG 488 >6GSZ-A nrPDB Length = 870 Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 176 KDFVIGFIAQRDMGGRD----EGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDII 231 KD+V I + D+G D + DWL P DD GDA +Y D + +D++ Sbjct: 556 KDWVDKGIVRNDVGLWDRSTFQWADWL--DPKAPADDPGDATTNKYLVSDAYLLHSTDML 613 Query: 232 IVGRGLFAKGRDAKVEGERYRK 253 +KG +A E + K Sbjct: 614 ANISTSLSKGEEASNYTEWHAK 635 >2IPC-A nrPDB Length = 997 Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 23/41 (56%) Query: 206 LDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKV 246 ++D+ A+ +Q DDV+S ++I R L G+D +V Sbjct: 741 VEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEV 781 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3GDT-A nrPDB 429 e-121 3G3M-A nrPDB 329 9e-91 3BVJ-A nrPDB 329 9e-91 3UWQ-A nrPDB 224 3e-59 2CZE-A nrPDB 200 5e-52 Sequences not found previously or not previously below threshold: 1EIX-A nrPDB 155 2e-38 3TR2-A nrPDB 128 3e-30 4LUJ-A nrPDB 108 3e-24 3TFX-A nrPDB 99 2e-21 2YYU-A nrPDB 96 2e-20 3RU6-A nrPDB 94 8e-20 3WK2-A nrPDB 91 5e-19 1DBT-A nrPDB 90 1e-18 4MUZ-A nrPDB 87 8e-18 1LOS-A nrPDB 84 4e-17 4DBE-A nrPDB 73 2e-13 4DF0-A nrPDB 67 7e-12 3VE9-A nrPDB 67 8e-12 3F4W-A nrPDB 44 6e-05 1VQT-A nrPDB 43 1e-04 4UJC-AB nrPDB 33 0.17 3FKJ-A nrPDB 31 0.59 3QH2-A nrPDB 31 0.61 2BA1-H nrPDB 31 0.78 3L9X-A nrPDB 30 1.1 3T55-A nrPDB 29 2.2 1YVK-A nrPDB 29 2.2 >3GDT-A nrPDB Length = 267 Score = 429 bits (1102), Expect = e-121, Method: Composition-based stats. Identities = 266/267 (99%), Positives = 267/267 (100%) Query: 1 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT 60 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT Sbjct: 1 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT 60 Query: 61 HVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITN 120 HVDILTDFSMEGTVKPLKALSAKYNFLLFE+RKFADIGNTVKLQYSAGVYRIAEWADITN Sbjct: 61 HVDILTDFSMEGTVKPLKALSAKYNFLLFENRKFADIGNTVKLQYSAGVYRIAEWADITN 120 Query: 121 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI 180 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI Sbjct: 121 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI 180 Query: 181 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK Sbjct: 181 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240 Query: 241 GRDAKVEGERYRKAGWEAYLRRCGQQN 267 GRDAKVEGERYRKAGWEAYLRRCGQQN Sbjct: 241 GRDAKVEGERYRKAGWEAYLRRCGQQN 267 >3G3M-A nrPDB Length = 279 Score = 329 bits (842), Expect = 9e-91, Method: Composition-based stats. Identities = 129/250 (51%), Positives = 172/250 (68%), Gaps = 9/250 (3%) Query: 16 PVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVK 75 PVA+KL +M +K+TNLC S DV +ELL+L +ALGP IC+LKTHVDIL DF+++ +K Sbjct: 37 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD-VMK 95 Query: 76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ 135 L L+ + FL+FEDRKFADIGNTVK QY G+++IA WAD+ NAH V G G+V GL++ Sbjct: 96 ELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQE 155 Query: 136 AAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGY 195 + RG L++AE+S GSLATG+YT+ V +A+ +FV+GFI+ + + E Sbjct: 156 VGLPLH---RGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPE-- 210 Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGRDAKVEGERYRKA 254 +L +TPGV L+ GD LGQQY + +V+ GSDIIIVGRG+ + D E YRKA Sbjct: 211 -FLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAA-DRLEAAEMYRKA 268 Query: 255 GWEAYLRRCG 264 WEAYL R G Sbjct: 269 AWEAYLSRLG 278 >3BVJ-A nrPDB Length = 312 Score = 329 bits (842), Expect = 9e-91, Method: Composition-based stats. Identities = 129/250 (51%), Positives = 172/250 (68%), Gaps = 9/250 (3%) Query: 16 PVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVK 75 PVA+KL +M +K+TNLC S DV +ELL+L +ALGP IC+LKTHVDIL DF+++ +K Sbjct: 70 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD-VMK 128 Query: 76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ 135 L L+ + FL+FEDRKFADIGNTVK QY G+++IA WAD+ NAH V G G+V GL++ Sbjct: 129 ELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQE 188 Query: 136 AAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGY 195 + RG L++AE+S GSLATG+YT+ V +A+ +FV+GFI+ + + E Sbjct: 189 VGLPLH---RGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPE-- 243 Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGRDAKVEGERYRKA 254 +L +TPGV L+ GD LGQQY + +V+ GSDIIIVGRG+ + D E YRKA Sbjct: 244 -FLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAA-DRLEAAEMYRKA 301 Query: 255 GWEAYLRRCG 264 WEAYL R G Sbjct: 302 AWEAYLSRLG 311 >3UWQ-A nrPDB Length = 255 Score = 224 bits (571), Expect = 3e-59, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 26/240 (10%) Query: 23 NIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA 82 N M++ + + +LD + L V+ + P C LK ++ T F + V+ L Sbjct: 23 NAMNDPK--VIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPD-FVRELH---- 75 Query: 83 KYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTK 142 K F +F D KF DI NT A + W + N H G +++ ++ E K Sbjct: 76 KRGFSVFLDLKFHDIPNTCSKAVKAAA-ELGVW--MVNVHASGGERMMAASREILEPYGK 132 Query: 143 EPRGLLM---------LAELSCKGSL-ATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGR 191 E R LL+ A+L G L A ++ + K+ D V+ + + + Sbjct: 133 E-RPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQ 191 Query: 192 DEGYDWLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGE 249 G ++ ++TPG+ G G Q R T +++GSD +++GR + V E Sbjct: 192 HLGREFKLVTPGI--RPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEE 249 >2CZE-A nrPDB Length = 208 Score = 200 bits (508), Expect = 5e-52, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 21/221 (9%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91 + +LDV + +++ +++ I ++K + ++ + V ++ L + + D Sbjct: 2 IVLALDVYEGERAIKIAKSVKDYISMIKVNWPLI----LGSGVDIIRRLKEETGVEIIAD 57 Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151 K ADI NT +L AD H VG V +K+ E ++M+ Sbjct: 58 LKLADIPNTNRLI---ARKVFGAGADYVIVHTFVGRDSVMAVKELGE--------IIMVV 106 Query: 152 ELSCKGSLA-TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKG 210 E+S G+L T +++A + F G IA G R E ++ G+ Sbjct: 107 EMSHPGALEFINPLTDRFIEVANEIEPF--GVIAP---GTRPERIGYIRDRLKEGIKILA 161 Query: 211 DALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERY 251 +G Q D V G+D IIVGR ++ + Y Sbjct: 162 PGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIY 202 >1EIX-A nrPDB Length = 245 Score = 155 bits (392), Expect = 2e-38, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 22/220 (10%) Query: 30 TNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLF 89 + + +LD + L V+ + P+ C LK ++ T F + V+ L + F +F Sbjct: 15 SPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQ-FVREL----QQRGFDIF 69 Query: 90 EDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLM 149 D KF DI NT A + W + N H G +++ ++A K+ L+ Sbjct: 70 LDLKFHDIPNTAAHA-VAAAADLGVW--MVNVHASGGARMMTAAREALVPFGKDAPLLIA 126 Query: 150 LAELSCKGS---------LATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGRDEGYDWLI 199 + L+ + L+ +Y + + + D V+ + + G ++ + Sbjct: 127 VTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKL 186 Query: 200 MTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGL 237 +TPG+ +G G Q R T + +S G D +++GR + Sbjct: 187 VTPGI--RPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPV 224 >3TR2-A nrPDB Length = 239 Score = 128 bits (321), Expect = 3e-30, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 99/244 (40%), Gaps = 24/244 (9%) Query: 23 NIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA 82 N M + + ++D T ++ + L P++C LK + T + V+ L Sbjct: 2 NAMEKPDPKVIVAIDAGTVEQARAQINPLTPELCHLKIGSILFTRYGP-AFVEELM---- 56 Query: 83 KYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTK 142 + + +F D KF DI TV A V + W + N H G ++ + A + +T Sbjct: 57 QKGYRIFLDLKFYDIPQTVAGACRA-VAELGVW--MMNIHISGGRTMMETVVNALQSITL 113 Query: 143 EPRGLLMLA---------ELSCKGSLA-TGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGR 191 + + LL+ +L G + +AKS D V+ + + + Sbjct: 114 KEKPLLIGVTILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAGLDGVVCSAQEAALLRK 173 Query: 192 DEGYDWLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGE 249 ++L++TPG+ L+ D G Q R T + GSD +++GR + + D E Sbjct: 174 QFDRNFLLVTPGIRLET--DEKGDQKRVMTPRAAIQAGSDYLVIGRPI-TQSTDPLKALE 230 Query: 250 RYRK 253 K Sbjct: 231 AIDK 234 >4LUJ-A nrPDB Length = 233 Score = 108 bits (269), Expect = 3e-24, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 22/225 (9%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91 L +LDV L++VE + + +K ++ + + +K + N + D Sbjct: 24 LMLALDVLDRDRALKIVEDVKDYVDAIKVGYPLV----LSTGTEIIKEIKKLCNKEVIAD 79 Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151 K ADI T + + ++AD HG VG V ++ A+++ K+ ++M+ Sbjct: 80 FKVADIPATNEKIAKITL----KYADGIIVHGFVGEDSVKAVQDVAKKLNKK---VIMVT 132 Query: 152 ELSCKGSLA-TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKG 210 E+S G++ ++AK K V +A R E + L Sbjct: 133 EMSHPGAVQFLQPIADKLSEMAKKLK--VDAIVAPS---TRPERLKEIKEI--AELPVIT 185 Query: 211 DALGQQYRTVDDV--VSTGSDIIIVGRGLFAKGRDAKVEGERYRK 253 +G Q ++D+ + +D +IVGR ++ + ++ K E ++Y++ Sbjct: 186 PGVGAQGGKIEDILNILDENDYVIVGRAIY-QSQNPKEEAKKYKE 229 >3TFX-A nrPDB Length = 259 Score = 99.1 bits (245), Expect = 2e-21, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 28/239 (11%) Query: 32 LCASLDVRTTKELLELVEALG-PKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFE 90 + +LD+ ++L +++ LG P +K +++ + +K L+ + + +F Sbjct: 7 VIVALDLDNEEQLNKILSKLGDPHDVFVKVGMELFY----NAGIDVIKKLTQQ-GYKIFL 61 Query: 91 DRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ---AAEEVTKEPRGL 147 D K DI NTV Y+ T H + G ++ K A L Sbjct: 62 DLKMHDIPNTV---YNGAKALAKLGITFTTVHALGGSQMIKSAKDGLIAGTPAGHSVPKL 118 Query: 148 LMLAELSCKGS----------LATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGRDEGYD 196 L + EL+ L E +AK D VI + + G D Sbjct: 119 LAVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSPLEVKKLHENIGDD 178 Query: 197 WLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRK 253 +L +TPG+ G+A Q R T GS I+VGR + D K E +K Sbjct: 179 FLYVTPGI--RPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPI-TLASDPKAAYEAIKK 234 >2YYU-A nrPDB Length = 246 Score = 95.6 bits (236), Expect = 2e-20, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 79/228 (34%), Gaps = 26/228 (11%) Query: 30 TNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLF 89 T +LD + +E+ + +K +++ + A + +F Sbjct: 5 TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPA-----IVAFLKEQGHAVF 59 Query: 90 EDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ---AAEEVTKEPRG 146 D K DI NTVK G+ R+ AD+ N H G ++ + A + Sbjct: 60 LDLKLHDIPNTVKQAMK-GLARVG--ADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPR 116 Query: 147 LLMLAELSCKG----------SLATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGRDEGY 195 + + +L+ S E +AK D V+ + G Sbjct: 117 CIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGA 176 Query: 196 DWLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGLFAKG 241 +L +TPG+ DA Q R T + GSD I++GR L Sbjct: 177 SFLAVTPGI--RFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAA 222 >3RU6-A nrPDB Length = 303 Score = 93.7 bits (231), Expect = 8e-20, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 19/231 (8%) Query: 26 HEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYN 85 LC +LD+ T +E L+L + L LK + + K ++ L + Sbjct: 21 QSNAMKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAY----LRDGFKFIEELKKVDD 76 Query: 86 FLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPR 145 F +F D KF DI NT+ V ++ D+ N H G + + + +K P Sbjct: 77 FKIFLDLKFHDIPNTMADACEE-VSKLGV--DMINIHASAGKIAIQEVMTRLSKFSKRPL 133 Query: 146 GLLMLAELS-------CKGSLATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGRDEGYDW 197 L + A S E I+ + D ++ + + ++ Sbjct: 134 VLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKKIKEHTSSNF 193 Query: 198 LIMTPGVGLDDKGDALGQQYRTVDDVVSTG--SDIIIVGRGLFAKGRDAKV 246 L +TPG+ G+ Q R + ++ SD I+VGR ++ V Sbjct: 194 LTLTPGI--RPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV 242 >3WK2-A nrPDB Length = 252 Score = 91.0 bits (224), Expect = 5e-19, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 78/227 (34%), Gaps = 18/227 (7%) Query: 15 SPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTV 74 S + ++ ++M + L ++D+ + L + + I +K ++ + + Sbjct: 2 SHMRSRRVDVM-DVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLV----LSEGM 56 Query: 75 KPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLK 134 + ++ + D ADI T + A AD HG G V Sbjct: 57 DIIAEFRKRFGCRIIADFAVADIPETNEKICRA---TFKAGADAIIVHGFPGADSVRACL 113 Query: 135 QAAEEVTKEPRGLLMLAELSCKGS-LATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDE 193 AEE+ +E + +L E+S G+ + + V ++ R E Sbjct: 114 NVAEEMGRE---VFLLTEMSHPGAEMFIQGAADEIARMGVDLG--VKNYVGPS---TRPE 165 Query: 194 GYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240 L G +G Q + + +D IIVGR ++ Sbjct: 166 RLSRLREIIGQDSFLISPGVGAQGGDPGETLRF-ADAIIVGRSIYLA 211 >1DBT-A nrPDB Length = 239 Score = 89.9 bits (221), Expect = 1e-18, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 84/241 (34%), Gaps = 26/241 (10%) Query: 33 CASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDR 92 +LD + +E L + + +K +++ VK LK + N LF D Sbjct: 7 IIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGP-SIVKQLK----ERNCELFLDL 61 Query: 93 KFADIGNTVKLQYSAGVYRIAEWA-DITNAHGVVGPGIVSGLKQAAE---EVTKEPRGLL 148 K DI TV R+A D+ N H G ++ + E K+ L+ Sbjct: 62 KLHDIPTTVNKAMK----RLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLI 117 Query: 149 MLAELSCKG-------SLATGEYTKGTVDIAKSDK----DFVIGFIAQRDMGGRDEGYDW 197 + +L+ L V +K + D V+ + + + + Sbjct: 118 AVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSF 177 Query: 198 LIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWE 257 L +TPG+ + + + T GS I+VGR + K D + R WE Sbjct: 178 LTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSI-TKAEDPVKAYKAVR-LEWE 235 Query: 258 A 258 Sbjct: 236 G 236 >4MUZ-A nrPDB Length = 229 Score = 87.2 bits (214), Expect = 8e-18, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 21/223 (9%) Query: 31 NLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFE 90 L +LDV ++ +E+ + + + +K + ++ + V +K LS + Sbjct: 23 QLILALDVMDGEKAMEIAKKVAEHVDRIKVNYPLV----LSAGVGIMKRLSEIK--PVIA 76 Query: 91 DRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLML 150 D K AD+ T L A+ HG VG + + + AEE + + + Sbjct: 77 DFKIADVPYTSSLI---ARIAFENSAESVIVHGFVGSDTLREVCRVAEEFGGK---VYAV 130 Query: 151 AELSCKGSLA-TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDK 209 ELS G + V+ AK G IA R E + G ++ Sbjct: 131 TELSSPGGEEFMSAVSLKIVEKAKEAG--CHGLIAPS---TRIERLREIRKAAG-DMEIL 184 Query: 210 GDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYR 252 +G Q +++ V +D IIVGRG++A G A+ + R Sbjct: 185 CPGIGAQKGSIEAV--KYADGIIVGRGIYASGNPAEEARKLRR 225 >1LOS-A nrPDB Length = 224 Score = 84.5 bits (207), Expect = 4e-17, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 21/210 (10%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91 L ++D+ + L + + I +K ++ + + + ++ + D Sbjct: 15 LILAMDLMNRDDALRVTGEVREYIDTVKIGYPLV----LSEGMDIIAEFRKRFGCRIIAD 70 Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151 K ADI T + A AD HG G V AEE+ +E + +L Sbjct: 71 FKVADIPETNEKICRA---TFKAGADAIIVHGFPGADSVRACLNVAEEMGRE---VFLLT 124 Query: 152 ELSCKGS-LATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKG 210 E+S G+ + + V ++ R E L G Sbjct: 125 EMSHPGAEMFIQGAADEIARMGVDLG--VKNYVGPS---TRPERLSRLREIIGQDSFLIS 179 Query: 211 DALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240 +G T+ D IIVG ++ Sbjct: 180 PGVGDPGETLRFA-----DAIIVGASIYLA 204 >4DBE-A nrPDB Length = 222 Score = 72.5 bits (176), Expect = 2e-13, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 84/214 (39%), Gaps = 23/214 (10%) Query: 29 QTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLL 88 ++ + ++D + ++L+ + ++ +K + ++ D ++ T + L L + + Sbjct: 3 KSRVILAMDKPLSYQVLK---EMENELYGIKVGLPLVLDLGVDKTRELLIGLDVE---EI 56 Query: 89 FEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLL 148 D K ADIG +K + +A+ AH +G + L + + + L Sbjct: 57 IVDFKLADIGYIMK-----SIVERLSFANSFIAHSFIG--VKGSLDELKRYLDANSKNLY 109 Query: 149 MLAELSCKG-SLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLD 207 ++A +S +G S +Y K + I + D+ MT Sbjct: 110 LVAVMSHEGWSTLFADYIKNVIR---EISPKGIVVGGTKLDHITQYRRDFEKMT------ 160 Query: 208 DKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKG 241 +G Q + D V G+D I+GR ++ G Sbjct: 161 IVSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAG 194 >4DF0-A nrPDB Length = 202 Score = 67.1 bits (162), Expect = 7e-12, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 32/226 (14%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91 L +LD K +++ + L + K D++ EG + + ++ N ++ D Sbjct: 7 LVVALDTEVLK-AIDVAKRLKGAVAGFKVGWDLI----FEGGISIVGEIARYGNVIV--D 59 Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151 K AD+ + V R A HG + P + G + + +L Sbjct: 60 LKIADVPHVASRVVEKLVNR---GACCVIVHGFLHPSLPRG------------QHVYVLV 104 Query: 152 ELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGD 211 +++ A Y + + S +D V GF+ G + E G Sbjct: 105 KMT-----APTIYDEMWEKLLNSVQD-VRGFVLP---GNQPEVVAQARKRIGCSYRIISP 155 Query: 212 ALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWE 257 +G Q + G+D IVGR + + + +YR +E Sbjct: 156 GIGPQGGRPGAAIEAGADFEIVGRYVL-EDPARISQWAQYRPTCFE 200 >3VE9-A nrPDB Length = 215 Score = 67.1 bits (162), Expect = 8e-12, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 83/234 (35%), Gaps = 32/234 (13%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91 + SLD +E L L K+ +K +L + E VK L L L D Sbjct: 4 VILSLDSPIPEETLR---KLNGKVAGIKVGWPLLLNLGKEK-VKELVGLVDGIKIL---D 56 Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVG-PGIVSGLKQAAEEVTKEPRGLLML 150 K ADI NT+ L + + + AH VG G ++ L Q + L ++ Sbjct: 57 LKLADIDNTMILIVD----ELKDITNSFIAHAFVGVEGSLASLSQRVD--------LFLV 104 Query: 151 AELSCKG-SLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDK 209 +S G + A Y + ++A+ GF+A R + L Sbjct: 105 LSMSHPGWNDAFYPYLR---EVARRVNP--KGFVAPA---TRPSMISRVKGDFPDKL-VI 155 Query: 210 GDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRC 263 +G Q + G+D IVGR ++ + E R E L C Sbjct: 156 SPGVGTQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQ--EEVLSSC 207 >3F4W-A nrPDB Length = 211 Score = 44.0 bits (102), Expect = 6e-05, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 26/220 (11%) Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNF-LLFE 90 L +LD T E + ++ + + +++ F + V +KA+ KY + Sbjct: 3 LQLALDELTLPEAMVFMDKVVDDVDIIEVGTP----FLIREGVNAIKAIKEKYPHKEVLA 58 Query: 91 DRKFADIGN-TVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLM 149 D K D G+ +L + AG AD GV + +AA+E K+ + Sbjct: 59 DAKIMDGGHFESQLLFDAG-------ADYVTVLGVTDVLTIQSCIRAAKEAGKQ-----V 106 Query: 150 LAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRD--EGYDWLIMTPGVGLD 207 + ++ C L ++ A +D V Q+ G + + L + + Sbjct: 107 VVDMICVDDL---PARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIA 163 Query: 208 DKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVE 247 G G +TV D G D++IVG + A Sbjct: 164 VAG---GISSQTVKDYALLGPDVVIVGSAITHAADPAGEA 200 >1VQT-A nrPDB Length = 213 Score = 43.3 bits (100), Expect = 1e-04, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 17/158 (10%) Query: 82 AKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVT 141 AK N + D KF DI +TV+ W V +G + ++ Sbjct: 55 AKRNLKIILDLKFCDIPSTVERSIK-------SWDHPAIIGFTV--HSCAGYESVERALS 105 Query: 142 KEPRGLLMLAELSCK-GSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIM 200 + + ++ +L+ GSL +Y + K DFV + E I+ Sbjct: 106 ATDKHVFVVVKLTSMEGSLE--DYMDRIEKLNKLGCDFV---LPGPWAKALREKIKGKIL 160 Query: 201 TPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLF 238 PG+ ++ K D + + ++ ++GR ++ Sbjct: 161 VPGIRMEVKADDQKDV--VTLEEMKGIANFAVLGREIY 196 >4UJC-AB nrPDB Length = 627 Score = 32.9 bits (73), Expect = 0.17, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 13 HPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFS 69 H V + H+ Q + + DVR ++ E+ ++LG +I + + F+ Sbjct: 421 HKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFT 477 >3FKJ-A nrPDB Length = 347 Score = 30.9 bits (68), Expect = 0.59, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 18/202 (8%) Query: 18 AAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPL 77 A ++++ T LC D + E + P +S+ ++ L Sbjct: 116 GAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQK--------AAYSLWLALEIL 167 Query: 78 KALS--AKYNFLLFEDRKFADIGNTVKLQYSAGVYRIA-EWADITNAHGVVGPGIVSGLK 134 A+Y+ L+ +F+D+ + + Q R A EW D + + G Sbjct: 168 AQTEGYAQYDELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVY-------MMGSG 220 Query: 135 QAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEG 194 + +E +L+ + S+ +GEY G +I + F++ + R D Sbjct: 221 PSFGAAHQESICILLEMQWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPLDDRA 280 Query: 195 YDWLIMTPGVGLDDKGDALGQQ 216 ++ G D LG Q Sbjct: 281 IRFIERYQGKLQLIDADKLGIQ 302 >3QH2-A nrPDB Length = 221 Score = 30.9 bits (68), Expect = 0.61, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 14/190 (7%) Query: 70 MEGTVKPLKALSAKYNFLLFEDRK--FADIGNTVKLQYSAGVYRIAEWADITNAHGVVGP 127 +E + + + + +F+ +R ADI + L + G+ + +G V Sbjct: 29 VEELARIIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRK-----LVMNGRVDI 83 Query: 128 GIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI-GFIAQR 186 + S + + + A + + V K D D+V+ G + + Sbjct: 84 ALFSTIHRVQLPSG-SFSPKQIRARFPHLHIGRSVHSLEEAVQAEKEDADYVLFGHVFET 142 Query: 187 DMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVD---DVVSTGSDIIIVGRGLFAKGRD 243 D EG +++ + + T D DV G+D I V G+F+ + Sbjct: 143 DCKKGLEGRGVSLLS-DIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSSA-E 200 Query: 244 AKVEGERYRK 253 RY + Sbjct: 201 PLEAARRYSR 210 >2BA1-H nrPDB Length = 259 Score = 30.5 bits (67), Expect = 0.78, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%) Query: 63 DILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAH 122 DIL D + + L+ E RK I N ++ + + ++ + Sbjct: 4 DILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLG------DTQ 57 Query: 123 GVVGPGIVSGLKQAAEEVTKEP-RGLLML-AELSCKGS--LATGEYTKGTVDIAKSDKDF 178 VVG + Q E P RG++++ AEL S G + ++++A+ Sbjct: 58 VVVGVKM-----QPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 112 Query: 179 V 179 + Sbjct: 113 I 113 >3L9X-A nrPDB Length = 413 Score = 30.2 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 10/176 (5%) Query: 18 AAKLFNIMHEKQTNLCASLDVRTTKELLEL---VEALGPKICLLKTHVDILTDFSMEGTV 74 A L N + + QTNL + V+ L++ + I L + V+ + EG + Sbjct: 69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGAL 128 Query: 75 KPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLK 134 K + +E R+ AD+ +Q V +A + T A V + L Sbjct: 129 KTGRLALESLGLGPYEARERADVFRRFNIQM---VEEMAMVENDTKARAAVYKRTSAMLS 185 Query: 135 QAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGG 190 + E R L L + G++T D ++ G + R G Sbjct: 186 EII----TEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSSTSGGLVPRGSSG 237 >3T55-A nrPDB Length = 272 Score = 29.0 bits (63), Expect = 2.2, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 2/89 (2%) Query: 164 YTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVD-- 221 +T+ D A VIG A+ M + + + PG+ A T D Sbjct: 170 HTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLL 229 Query: 222 DVVSTGSDIIIVGRGLFAKGRDAKVEGER 250 G+D ++VG GL G + Sbjct: 230 AYAGAGADAVLVGEGLVTSGDPRAAVADL 258 >1YVK-A nrPDB Length = 163 Score = 29.0 bits (63), Expect = 2.2, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 10/122 (8%) Query: 135 QAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEG 194 + EE E LL+LA+ EY + D + G + R + Sbjct: 9 ELGEETNDELYDLLLLAD---PSKDIVDEYLERGECYTAWAGDELAGVYV--LLKTRPQT 63 Query: 195 YDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKA 254 + + + L KG ++ G+D I +G G + + Y+K Sbjct: 64 VEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIG-----TGNSSIHQLSLYQKC 118 Query: 255 GW 256 G+ Sbjct: 119 GF 120 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.308 0.123 0.305 Lambda K H 0.267 0.0376 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,618,069 Number of Sequences: 36641 Number of extensions: 308982 Number of successful extensions: 925 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 846 Number of HSP's gapped (non-prelim): 46 length of query: 267 length of database: 10,336,785 effective HSP length: 95 effective length of query: 172 effective length of database: 6,855,890 effective search space: 1179213080 effective search space used: 1179213080 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 58 (27.1 bits)