BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P03962
(267 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
3GDT-A nrPDB 548 e-157
3BVJ-A nrPDB 249 7e-67
3G3M-A nrPDB 249 8e-67
2CZE-A nrPDB 40 0.001
3UWQ-A nrPDB 40 0.001
3TR2-A nrPDB 39 0.003
1EIX-A nrPDB 35 0.031
4LUJ-A nrPDB 35 0.046
4MUZ-A nrPDB 34 0.078
3RU6-A nrPDB 33 0.14
4DBE-A nrPDB 28 3.0
1CR6-A nrPDB 28 3.6
2TMD-A nrPDB 28 4.9
6GSZ-A nrPDB 28 4.9
2IPC-A nrPDB 28 5.4
>3GDT-A nrPDB
Length = 267
Score = 548 bits (1412), Expect = e-157, Method: Compositional matrix adjust.
Identities = 266/267 (99%), Positives = 267/267 (100%)
Query: 1 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT 60
MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT
Sbjct: 1 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT 60
Query: 61 HVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITN 120
HVDILTDFSMEGTVKPLKALSAKYNFLLFE+RKFADIGNTVKLQYSAGVYRIAEWADITN
Sbjct: 61 HVDILTDFSMEGTVKPLKALSAKYNFLLFENRKFADIGNTVKLQYSAGVYRIAEWADITN 120
Query: 121 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI 180
AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI
Sbjct: 121 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI 180
Query: 181 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240
GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK
Sbjct: 181 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240
Query: 241 GRDAKVEGERYRKAGWEAYLRRCGQQN 267
GRDAKVEGERYRKAGWEAYLRRCGQQN
Sbjct: 241 GRDAKVEGERYRKAGWEAYLRRCGQQN 267
>3BVJ-A nrPDB
Length = 312
Score = 249 bits (637), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 129/250 (51%), Positives = 172/250 (68%), Gaps = 9/250 (3%)
Query: 16 PVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVK 75
PVA+KL +M +K+TNLC S DV +ELL+L +ALGP IC+LKTHVDIL DF+++ +K
Sbjct: 70 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD-VMK 128
Query: 76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ 135
L L+ + FL+FEDRKFADIGNTVK QY G+++IA WAD+ NAH V G G+V GL++
Sbjct: 129 ELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQE 188
Query: 136 AAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGY 195
+ RG L++AE+S GSLATG+YT+ V +A+ +FV+GFI+ + + E
Sbjct: 189 VGLPLH---RGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPE-- 243
Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGRDAKVEGERYRKA 254
+L +TPGV L+ GD LGQQY + +V+ GSDIIIVGRG+ + D E YRKA
Sbjct: 244 -FLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAA-DRLEAAEMYRKA 301
Query: 255 GWEAYLRRCG 264
WEAYL R G
Sbjct: 302 AWEAYLSRLG 311
>3G3M-A nrPDB
Length = 279
Score = 249 bits (636), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 129/250 (51%), Positives = 172/250 (68%), Gaps = 9/250 (3%)
Query: 16 PVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVK 75
PVA+KL +M +K+TNLC S DV +ELL+L +ALGP IC+LKTHVDIL DF+++ +K
Sbjct: 37 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD-VMK 95
Query: 76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ 135
L L+ + FL+FEDRKFADIGNTVK QY G+++IA WAD+ NAH V G G+V GL++
Sbjct: 96 ELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQE 155
Query: 136 AAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGY 195
+ RG L++AE+S GSLATG+YT+ V +A+ +FV+GFI+ + + E
Sbjct: 156 VGLPLH---RGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPE-- 210
Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGRDAKVEGERYRKA 254
+L +TPGV L+ GD LGQQY + +V+ GSDIIIVGRG+ + D E YRKA
Sbjct: 211 -FLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAA-DRLEAAEMYRKA 268
Query: 255 GWEAYLRRCG 264
WEAYL R G
Sbjct: 269 AWEAYLSRLG 278
>2CZE-A nrPDB
Length = 208
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 29/212 (13%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
+ +LDV + +++ +++ I ++K + ++ + V ++ L + + D
Sbjct: 2 IVLALDVYEGERAIKIAKSVKDYISMIKVNWPLI----LGSGVDIIRRLKEETGVEIIAD 57
Query: 92 RKFADIGNTVKL----QYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGL 147
K ADI NT +L + AG AD H VG V +K+ E +
Sbjct: 58 LKLADIPNTNRLIARKVFGAG-------ADYVIVHTFVGRDSVMAVKELGE--------I 102
Query: 148 LMLAELSCKGSLA-TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGL 206
+M+ E+S G+L T +++A + F G IA G R E ++ G+
Sbjct: 103 IMVVEMSHPGALEFINPLTDRFIEVANEIEPF--GVIAP---GTRPERIGYIRDRLKEGI 157
Query: 207 DDKGDALGQQYRTVDDVVSTGSDIIIVGRGLF 238
+G Q D V G+D IIVGR ++
Sbjct: 158 KILAPGIGAQGGKAKDAVKAGADYIIVGRAIY 189
>3UWQ-A nrPDB
Length = 255
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 26/228 (11%)
Query: 23 NIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA 82
N M++ + + +LD + L V+ + P C LK ++ T F + V+ L
Sbjct: 23 NAMNDPK--VIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPD-FVRELH---- 75
Query: 83 KYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTK 142
K F +F D KF DI NT A + W + N H G +++ ++ E K
Sbjct: 76 KRGFSVFLDLKFHDIPNTCSKAVKAAA-ELGVW--MVNVHASGGERMMAASREILEPYGK 132
Query: 143 EPRGLLM---------LAELSCKGSL-ATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGR 191
E R LL+ A+L G L A ++ + K+ D V+ + + +
Sbjct: 133 E-RPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQ 191
Query: 192 DEGYDWLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGL 237
G ++ ++TPG+ G G Q R T +++GSD +++GR +
Sbjct: 192 HLGREFKLVTPGI--RPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPI 237
>3TR2-A nrPDB
Length = 239
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 23/228 (10%)
Query: 23 NIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA 82
N M + + ++D T ++ + L P++C LK + T + V+ L
Sbjct: 2 NAMEKPDPKVIVAIDAGTVEQARAQINPLTPELCHLKIGSILFTRYG-PAFVEEL----M 56
Query: 83 KYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTK 142
+ + +F D KF DI TV A V + W + N H G ++ + A + +T
Sbjct: 57 QKGYRIFLDLKFYDIPQTVAGACRA-VAELGVW--MMNIHISGGRTMMETVVNALQSITL 113
Query: 143 EPRGLLMLAEL--SCKGS-LATGEYTKGTVDI-------AKSDK-DFVIGFIAQRDMGGR 191
+ + LL+ + S GS L T + DI AKS D V+ + + +
Sbjct: 114 KEKPLLIGVTILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAGLDGVVCSAQEAALLRK 173
Query: 192 DEGYDWLIMTPGVGL--DDKGDALGQQYRTVDDVVSTGSDIIIVGRGL 237
++L++TPG+ L D+KGD ++ T + GSD +++GR +
Sbjct: 174 QFDRNFLLVTPGIRLETDEKGDQ--KRVMTPRAAIQAGSDYLVIGRPI 219
>1EIX-A nrPDB
Length = 245
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 22/218 (10%)
Query: 30 TNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLF 89
+ + +LD + L V+ + P+ C LK ++ T F + V+ L+ + F +F
Sbjct: 15 SPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQ-FVRELQ----QRGFDIF 69
Query: 90 EDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLM 149
D KF DI NT A + W + N H G +++ ++A K+ L+
Sbjct: 70 LDLKFHDIPNTAA-HAVAAAADLGVW--MVNVHASGGARMMTAAREALVPFGKDAPLLIA 126
Query: 150 LAELSCKG---------SLATGEYTKGTVDIA-KSDKDFVIGFIAQRDMGGRDEGYDWLI 199
+ L+ +L+ +Y + + K D V+ + + G ++ +
Sbjct: 127 VTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKL 186
Query: 200 MTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGR 235
+TPG+ +G G Q R T + +S G D +++GR
Sbjct: 187 VTPGI--RPQGSEAGDQRRIMTPEQALSAGVDYMVIGR 222
>4LUJ-A nrPDB
Length = 233
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 109/229 (47%), Gaps = 30/229 (13%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
L +LDV L++VE + + +K ++ E +K +K L K + D
Sbjct: 24 LMLALDVLDRDRALKIVEDVKDYVDAIKVGYPLVLSTGTE-IIKEIKKLCNKE---VIAD 79
Query: 92 RKFADIGNTVKLQYSAGVYRIA-EWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLML 150
K ADI T + + +I ++AD HG VG V ++ A+++ K+ ++M+
Sbjct: 80 FKVADIPAT-----NEKIAKITLKYADGIIVHGFVGEDSVKAVQDVAKKLNKK---VIMV 131
Query: 151 AELSCKGSLATGEYTKGTVD----IAKSDKDFVIGFIAQRDMGGRD--EGYDWLIMTPGV 204
E+S G++ ++ + D +AK K I + R ++ E + ++TPGV
Sbjct: 132 TEMSHPGAV---QFLQPIADKLSEMAKKLKVDAIVAPSTRPERLKEIKEIAELPVITPGV 188
Query: 205 GLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRK 253
G A G + + +++ +D +IVGR ++ + ++ K E ++Y++
Sbjct: 189 G------AQGGKIEDILNILDE-NDYVIVGRAIY-QSQNPKEEAKKYKE 229
>4MUZ-A nrPDB
Length = 229
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 42/238 (17%)
Query: 26 HEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYN 85
H KQ L +LDV ++ +E+ + + + +K + ++ + G +K L +
Sbjct: 20 HMKQ--LILALDVMDGEKAMEIAKKVAEHVDRIKVNYPLVLSAGV-GIMKRLSEIKP--- 73
Query: 86 FLLFEDRKFADIGNTVKLQYSAGVYRIA--EWADITNAHGVVGPGIVSGLKQAAEEVTKE 143
+ D K AD+ T L + RIA A+ HG VG + + + AEE +
Sbjct: 74 --VIADFKIADVPYTSSL-----IARIAFENSAESVIVHGFVGSDTLREVCRVAEEFGGK 126
Query: 144 PRGLLMLAELSCKGSLATGEYTKGTVD---IAKSDKDFVIGFIA-----QRDMGGRDEGY 195
+ + ELS G GE V + K+ + G IA +R R
Sbjct: 127 ---VYAVTELSSPG----GEEFMSAVSLKIVEKAKEAGCHGLIAPSTRIERLREIRKAAG 179
Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRK 253
D I+ PG+G KG +Y +D IIVGRG++A G A+ E + R+
Sbjct: 180 DMEILCPGIG-AQKGSIEAVKY----------ADGIIVGRGIYASGNPAE-EARKLRR 225
>3RU6-A nrPDB
Length = 303
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 19/217 (8%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
LC +LD+ T +E L+L + L LK L + +G K ++ L +F +F D
Sbjct: 27 LCVALDLSTKEECLQLAKELKNLDIWLKVG---LRAYLRDG-FKFIEELKKVDDFKIFLD 82
Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151
KF DI NT+ V ++ D+ N H G + + + +K P L + A
Sbjct: 83 LKFHDIPNTMA-DACEEVSKLG--VDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSA 139
Query: 152 ELSCKG----SLATGEYTKGTVDIAK----SDKDFVIGFIAQRDMGGRDEGYDWLIMTPG 203
S S+ + + ++ +K + D ++ + + ++L +TPG
Sbjct: 140 LTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKKIKEHTSSNFLTLTPG 199
Query: 204 VGLDDKGDALGQQYRTVDDVVS--TGSDIIIVGRGLF 238
+ G+ Q R + ++ SD I+VGR ++
Sbjct: 200 IR--PFGETNDDQKRVANLAMARENLSDYIVVGRPIY 234
>4DBE-A nrPDB
Length = 222
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 91 DRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLML 150
D K ADIG +K + V R++ +A+ AH +G + L + + + L ++
Sbjct: 59 DFKLADIGYIMK----SIVERLS-FANSFIAHSFIG--VKGSLDELKRYLDANSKNLYLV 111
Query: 151 AELSCKG-SLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWL-IMTPGVGLDD 208
A +S +G S +Y K + S K V+G + ++ + I++PG+G
Sbjct: 112 AVMSHEGWSTLFADYIKNVIR-EISPKGIVVGGTKLDHITQYRRDFEKMTIVSPGMG--S 168
Query: 209 KGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKG 241
+G + G D V G+D I+GR ++ G
Sbjct: 169 QGGSYG-------DAVCAGADYEIIGRSIYNAG 194
>1CR6-A nrPDB
Length = 554
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 49 EALGPKICLLKTHVDILTDFSMEGTVKP--------LKALSAKYNFLLFEDRKFADIGNT 100
++L +C L H D L + G +KP L L AK N ++F D D G+
Sbjct: 134 DSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPNEVVFLD----DFGSN 189
Query: 101 VKLQYSAGVYRI 112
+K G+ I
Sbjct: 190 LKPARDMGMVTI 201
>2TMD-A nrPDB
Length = 729
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 212 ALGQQYRTVDDVVSTGSDIIIVGRG 236
ALGQ+ T DDV+ G+D +I+ G
Sbjct: 464 ALGQKPMTADDVLQYGADKVIIATG 488
>6GSZ-A nrPDB
Length = 870
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 176 KDFVIGFIAQRDMGGRD----EGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDII 231
KD+V I + D+G D + DWL P DD GDA +Y D + +D++
Sbjct: 556 KDWVDKGIVRNDVGLWDRSTFQWADWL--DPKAPADDPGDATTNKYLVSDAYLLHSTDML 613
Query: 232 IVGRGLFAKGRDAKVEGERYRK 253
+KG +A E + K
Sbjct: 614 ANISTSLSKGEEASNYTEWHAK 635
>2IPC-A nrPDB
Length = 997
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 206 LDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKV 246
++D+ A+ +Q DDV+S ++I R L G+D +V
Sbjct: 741 VEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEV 781
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
3GDT-A nrPDB 429 e-121
3G3M-A nrPDB 329 9e-91
3BVJ-A nrPDB 329 9e-91
3UWQ-A nrPDB 224 3e-59
2CZE-A nrPDB 200 5e-52
Sequences not found previously or not previously below threshold:
1EIX-A nrPDB 155 2e-38
3TR2-A nrPDB 128 3e-30
4LUJ-A nrPDB 108 3e-24
3TFX-A nrPDB 99 2e-21
2YYU-A nrPDB 96 2e-20
3RU6-A nrPDB 94 8e-20
3WK2-A nrPDB 91 5e-19
1DBT-A nrPDB 90 1e-18
4MUZ-A nrPDB 87 8e-18
1LOS-A nrPDB 84 4e-17
4DBE-A nrPDB 73 2e-13
4DF0-A nrPDB 67 7e-12
3VE9-A nrPDB 67 8e-12
3F4W-A nrPDB 44 6e-05
1VQT-A nrPDB 43 1e-04
4UJC-AB nrPDB 33 0.17
3FKJ-A nrPDB 31 0.59
3QH2-A nrPDB 31 0.61
2BA1-H nrPDB 31 0.78
3L9X-A nrPDB 30 1.1
3T55-A nrPDB 29 2.2
1YVK-A nrPDB 29 2.2
>3GDT-A nrPDB
Length = 267
Score = 429 bits (1102), Expect = e-121, Method: Composition-based stats.
Identities = 266/267 (99%), Positives = 267/267 (100%)
Query: 1 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT 60
MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT
Sbjct: 1 MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT 60
Query: 61 HVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITN 120
HVDILTDFSMEGTVKPLKALSAKYNFLLFE+RKFADIGNTVKLQYSAGVYRIAEWADITN
Sbjct: 61 HVDILTDFSMEGTVKPLKALSAKYNFLLFENRKFADIGNTVKLQYSAGVYRIAEWADITN 120
Query: 121 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI 180
AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI
Sbjct: 121 AHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI 180
Query: 181 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240
GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK
Sbjct: 181 GFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240
Query: 241 GRDAKVEGERYRKAGWEAYLRRCGQQN 267
GRDAKVEGERYRKAGWEAYLRRCGQQN
Sbjct: 241 GRDAKVEGERYRKAGWEAYLRRCGQQN 267
>3G3M-A nrPDB
Length = 279
Score = 329 bits (842), Expect = 9e-91, Method: Composition-based stats.
Identities = 129/250 (51%), Positives = 172/250 (68%), Gaps = 9/250 (3%)
Query: 16 PVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVK 75
PVA+KL +M +K+TNLC S DV +ELL+L +ALGP IC+LKTHVDIL DF+++ +K
Sbjct: 37 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD-VMK 95
Query: 76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ 135
L L+ + FL+FEDRKFADIGNTVK QY G+++IA WAD+ NAH V G G+V GL++
Sbjct: 96 ELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQE 155
Query: 136 AAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGY 195
+ RG L++AE+S GSLATG+YT+ V +A+ +FV+GFI+ + + E
Sbjct: 156 VGLPLH---RGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPE-- 210
Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGRDAKVEGERYRKA 254
+L +TPGV L+ GD LGQQY + +V+ GSDIIIVGRG+ + D E YRKA
Sbjct: 211 -FLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAA-DRLEAAEMYRKA 268
Query: 255 GWEAYLRRCG 264
WEAYL R G
Sbjct: 269 AWEAYLSRLG 278
>3BVJ-A nrPDB
Length = 312
Score = 329 bits (842), Expect = 9e-91, Method: Composition-based stats.
Identities = 129/250 (51%), Positives = 172/250 (68%), Gaps = 9/250 (3%)
Query: 16 PVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVK 75
PVA+KL +M +K+TNLC S DV +ELL+L +ALGP IC+LKTHVDIL DF+++ +K
Sbjct: 70 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD-VMK 128
Query: 76 PLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ 135
L L+ + FL+FEDRKFADIGNTVK QY G+++IA WAD+ NAH V G G+V GL++
Sbjct: 129 ELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQE 188
Query: 136 AAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGY 195
+ RG L++AE+S GSLATG+YT+ V +A+ +FV+GFI+ + + E
Sbjct: 189 VGLPLH---RGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPE-- 243
Query: 196 DWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGRDAKVEGERYRKA 254
+L +TPGV L+ GD LGQQY + +V+ GSDIIIVGRG+ + D E YRKA
Sbjct: 244 -FLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAA-DRLEAAEMYRKA 301
Query: 255 GWEAYLRRCG 264
WEAYL R G
Sbjct: 302 AWEAYLSRLG 311
>3UWQ-A nrPDB
Length = 255
Score = 224 bits (571), Expect = 3e-59, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 26/240 (10%)
Query: 23 NIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA 82
N M++ + + +LD + L V+ + P C LK ++ T F + V+ L
Sbjct: 23 NAMNDPK--VIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPD-FVRELH---- 75
Query: 83 KYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTK 142
K F +F D KF DI NT A + W + N H G +++ ++ E K
Sbjct: 76 KRGFSVFLDLKFHDIPNTCSKAVKAAA-ELGVW--MVNVHASGGERMMAASREILEPYGK 132
Query: 143 EPRGLLM---------LAELSCKGSL-ATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGR 191
E R LL+ A+L G L A ++ + K+ D V+ + + +
Sbjct: 133 E-RPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQ 191
Query: 192 DEGYDWLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGE 249
G ++ ++TPG+ G G Q R T +++GSD +++GR + V E
Sbjct: 192 HLGREFKLVTPGI--RPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEE 249
>2CZE-A nrPDB
Length = 208
Score = 200 bits (508), Expect = 5e-52, Method: Composition-based stats.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 21/221 (9%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
+ +LDV + +++ +++ I ++K + ++ + V ++ L + + D
Sbjct: 2 IVLALDVYEGERAIKIAKSVKDYISMIKVNWPLI----LGSGVDIIRRLKEETGVEIIAD 57
Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151
K ADI NT +L AD H VG V +K+ E ++M+
Sbjct: 58 LKLADIPNTNRLI---ARKVFGAGADYVIVHTFVGRDSVMAVKELGE--------IIMVV 106
Query: 152 ELSCKGSLA-TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKG 210
E+S G+L T +++A + F G IA G R E ++ G+
Sbjct: 107 EMSHPGALEFINPLTDRFIEVANEIEPF--GVIAP---GTRPERIGYIRDRLKEGIKILA 161
Query: 211 DALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERY 251
+G Q D V G+D IIVGR ++ + Y
Sbjct: 162 PGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIY 202
>1EIX-A nrPDB
Length = 245
Score = 155 bits (392), Expect = 2e-38, Method: Composition-based stats.
Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 22/220 (10%)
Query: 30 TNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLF 89
+ + +LD + L V+ + P+ C LK ++ T F + V+ L + F +F
Sbjct: 15 SPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQ-FVREL----QQRGFDIF 69
Query: 90 EDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLM 149
D KF DI NT A + W + N H G +++ ++A K+ L+
Sbjct: 70 LDLKFHDIPNTAAHA-VAAAADLGVW--MVNVHASGGARMMTAAREALVPFGKDAPLLIA 126
Query: 150 LAELSCKGS---------LATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGRDEGYDWLI 199
+ L+ + L+ +Y + + + D V+ + + G ++ +
Sbjct: 127 VTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKL 186
Query: 200 MTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGL 237
+TPG+ +G G Q R T + +S G D +++GR +
Sbjct: 187 VTPGI--RPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPV 224
>3TR2-A nrPDB
Length = 239
Score = 128 bits (321), Expect = 3e-30, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 99/244 (40%), Gaps = 24/244 (9%)
Query: 23 NIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA 82
N M + + ++D T ++ + L P++C LK + T + V+ L
Sbjct: 2 NAMEKPDPKVIVAIDAGTVEQARAQINPLTPELCHLKIGSILFTRYGP-AFVEELM---- 56
Query: 83 KYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTK 142
+ + +F D KF DI TV A V + W + N H G ++ + A + +T
Sbjct: 57 QKGYRIFLDLKFYDIPQTVAGACRA-VAELGVW--MMNIHISGGRTMMETVVNALQSITL 113
Query: 143 EPRGLLMLA---------ELSCKGSLA-TGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGR 191
+ + LL+ +L G + +AKS D V+ + + +
Sbjct: 114 KEKPLLIGVTILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAGLDGVVCSAQEAALLRK 173
Query: 192 DEGYDWLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGE 249
++L++TPG+ L+ D G Q R T + GSD +++GR + + D E
Sbjct: 174 QFDRNFLLVTPGIRLET--DEKGDQKRVMTPRAAIQAGSDYLVIGRPI-TQSTDPLKALE 230
Query: 250 RYRK 253
K
Sbjct: 231 AIDK 234
>4LUJ-A nrPDB
Length = 233
Score = 108 bits (269), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
L +LDV L++VE + + +K ++ + + +K + N + D
Sbjct: 24 LMLALDVLDRDRALKIVEDVKDYVDAIKVGYPLV----LSTGTEIIKEIKKLCNKEVIAD 79
Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151
K ADI T + + ++AD HG VG V ++ A+++ K+ ++M+
Sbjct: 80 FKVADIPATNEKIAKITL----KYADGIIVHGFVGEDSVKAVQDVAKKLNKK---VIMVT 132
Query: 152 ELSCKGSLA-TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKG 210
E+S G++ ++AK K V +A R E + L
Sbjct: 133 EMSHPGAVQFLQPIADKLSEMAKKLK--VDAIVAPS---TRPERLKEIKEI--AELPVIT 185
Query: 211 DALGQQYRTVDDV--VSTGSDIIIVGRGLFAKGRDAKVEGERYRK 253
+G Q ++D+ + +D +IVGR ++ + ++ K E ++Y++
Sbjct: 186 PGVGAQGGKIEDILNILDENDYVIVGRAIY-QSQNPKEEAKKYKE 229
>3TFX-A nrPDB
Length = 259
Score = 99.1 bits (245), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 28/239 (11%)
Query: 32 LCASLDVRTTKELLELVEALG-PKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFE 90
+ +LD+ ++L +++ LG P +K +++ + +K L+ + + +F
Sbjct: 7 VIVALDLDNEEQLNKILSKLGDPHDVFVKVGMELFY----NAGIDVIKKLTQQ-GYKIFL 61
Query: 91 DRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ---AAEEVTKEPRGL 147
D K DI NTV Y+ T H + G ++ K A L
Sbjct: 62 DLKMHDIPNTV---YNGAKALAKLGITFTTVHALGGSQMIKSAKDGLIAGTPAGHSVPKL 118
Query: 148 LMLAELSCKGS----------LATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGRDEGYD 196
L + EL+ L E +AK D VI + + G D
Sbjct: 119 LAVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSPLEVKKLHENIGDD 178
Query: 197 WLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRK 253
+L +TPG+ G+A Q R T GS I+VGR + D K E +K
Sbjct: 179 FLYVTPGI--RPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPI-TLASDPKAAYEAIKK 234
>2YYU-A nrPDB
Length = 246
Score = 95.6 bits (236), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/228 (20%), Positives = 79/228 (34%), Gaps = 26/228 (11%)
Query: 30 TNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLF 89
T +LD + +E+ + +K +++ + A + +F
Sbjct: 5 TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPA-----IVAFLKEQGHAVF 59
Query: 90 EDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQ---AAEEVTKEPRG 146
D K DI NTVK G+ R+ AD+ N H G ++ + A +
Sbjct: 60 LDLKLHDIPNTVKQAMK-GLARVG--ADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPR 116
Query: 147 LLMLAELSCKG----------SLATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGRDEGY 195
+ + +L+ S E +AK D V+ + G
Sbjct: 117 CIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGA 176
Query: 196 DWLIMTPGVGLDDKGDALGQQYR--TVDDVVSTGSDIIIVGRGLFAKG 241
+L +TPG+ DA Q R T + GSD I++GR L
Sbjct: 177 SFLAVTPGI--RFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAA 222
>3RU6-A nrPDB
Length = 303
Score = 93.7 bits (231), Expect = 8e-20, Method: Composition-based stats.
Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 19/231 (8%)
Query: 26 HEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYN 85
LC +LD+ T +E L+L + L LK + + K ++ L +
Sbjct: 21 QSNAMKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAY----LRDGFKFIEELKKVDD 76
Query: 86 FLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPR 145
F +F D KF DI NT+ V ++ D+ N H G + + + +K P
Sbjct: 77 FKIFLDLKFHDIPNTMADACEE-VSKLGV--DMINIHASAGKIAIQEVMTRLSKFSKRPL 133
Query: 146 GLLMLAELS-------CKGSLATGEYTKGTVDIAKSDK-DFVIGFIAQRDMGGRDEGYDW 197
L + A S E I+ + D ++ + + ++
Sbjct: 134 VLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKKIKEHTSSNF 193
Query: 198 LIMTPGVGLDDKGDALGQQYRTVDDVVSTG--SDIIIVGRGLFAKGRDAKV 246
L +TPG+ G+ Q R + ++ SD I+VGR ++ V
Sbjct: 194 LTLTPGI--RPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV 242
>3WK2-A nrPDB
Length = 252
Score = 91.0 bits (224), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 78/227 (34%), Gaps = 18/227 (7%)
Query: 15 SPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTV 74
S + ++ ++M + L ++D+ + L + + I +K ++ + +
Sbjct: 2 SHMRSRRVDVM-DVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLV----LSEGM 56
Query: 75 KPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLK 134
+ ++ + D ADI T + A AD HG G V
Sbjct: 57 DIIAEFRKRFGCRIIADFAVADIPETNEKICRA---TFKAGADAIIVHGFPGADSVRACL 113
Query: 135 QAAEEVTKEPRGLLMLAELSCKGS-LATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDE 193
AEE+ +E + +L E+S G+ + + V ++ R E
Sbjct: 114 NVAEEMGRE---VFLLTEMSHPGAEMFIQGAADEIARMGVDLG--VKNYVGPS---TRPE 165
Query: 194 GYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240
L G +G Q + + +D IIVGR ++
Sbjct: 166 RLSRLREIIGQDSFLISPGVGAQGGDPGETLRF-ADAIIVGRSIYLA 211
>1DBT-A nrPDB
Length = 239
Score = 89.9 bits (221), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 84/241 (34%), Gaps = 26/241 (10%)
Query: 33 CASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDR 92
+LD + +E L + + +K +++ VK LK + N LF D
Sbjct: 7 IIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGP-SIVKQLK----ERNCELFLDL 61
Query: 93 KFADIGNTVKLQYSAGVYRIAEWA-DITNAHGVVGPGIVSGLKQAAE---EVTKEPRGLL 148
K DI TV R+A D+ N H G ++ + E K+ L+
Sbjct: 62 KLHDIPTTVNKAMK----RLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLI 117
Query: 149 MLAELSCKG-------SLATGEYTKGTVDIAKSDK----DFVIGFIAQRDMGGRDEGYDW 197
+ +L+ L V +K + D V+ + + + +
Sbjct: 118 AVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSF 177
Query: 198 LIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWE 257
L +TPG+ + + + T GS I+VGR + K D + R WE
Sbjct: 178 LTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSI-TKAEDPVKAYKAVR-LEWE 235
Query: 258 A 258
Sbjct: 236 G 236
>4MUZ-A nrPDB
Length = 229
Score = 87.2 bits (214), Expect = 8e-18, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 21/223 (9%)
Query: 31 NLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFE 90
L +LDV ++ +E+ + + + +K + ++ + V +K LS +
Sbjct: 23 QLILALDVMDGEKAMEIAKKVAEHVDRIKVNYPLV----LSAGVGIMKRLSEIK--PVIA 76
Query: 91 DRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLML 150
D K AD+ T L A+ HG VG + + + AEE + + +
Sbjct: 77 DFKIADVPYTSSLI---ARIAFENSAESVIVHGFVGSDTLREVCRVAEEFGGK---VYAV 130
Query: 151 AELSCKGSLA-TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDK 209
ELS G + V+ AK G IA R E + G ++
Sbjct: 131 TELSSPGGEEFMSAVSLKIVEKAKEAG--CHGLIAPS---TRIERLREIRKAAG-DMEIL 184
Query: 210 GDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYR 252
+G Q +++ V +D IIVGRG++A G A+ + R
Sbjct: 185 CPGIGAQKGSIEAV--KYADGIIVGRGIYASGNPAEEARKLRR 225
>1LOS-A nrPDB
Length = 224
Score = 84.5 bits (207), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 21/210 (10%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
L ++D+ + L + + I +K ++ + + + ++ + D
Sbjct: 15 LILAMDLMNRDDALRVTGEVREYIDTVKIGYPLV----LSEGMDIIAEFRKRFGCRIIAD 70
Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151
K ADI T + A AD HG G V AEE+ +E + +L
Sbjct: 71 FKVADIPETNEKICRA---TFKAGADAIIVHGFPGADSVRACLNVAEEMGRE---VFLLT 124
Query: 152 ELSCKGS-LATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKG 210
E+S G+ + + V ++ R E L G
Sbjct: 125 EMSHPGAEMFIQGAADEIARMGVDLG--VKNYVGPS---TRPERLSRLREIIGQDSFLIS 179
Query: 211 DALGQQYRTVDDVVSTGSDIIIVGRGLFAK 240
+G T+ D IIVG ++
Sbjct: 180 PGVGDPGETLRFA-----DAIIVGASIYLA 204
>4DBE-A nrPDB
Length = 222
Score = 72.5 bits (176), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/214 (18%), Positives = 84/214 (39%), Gaps = 23/214 (10%)
Query: 29 QTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLL 88
++ + ++D + ++L+ + ++ +K + ++ D ++ T + L L + +
Sbjct: 3 KSRVILAMDKPLSYQVLK---EMENELYGIKVGLPLVLDLGVDKTRELLIGLDVE---EI 56
Query: 89 FEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLL 148
D K ADIG +K + +A+ AH +G + L + + + L
Sbjct: 57 IVDFKLADIGYIMK-----SIVERLSFANSFIAHSFIG--VKGSLDELKRYLDANSKNLY 109
Query: 149 MLAELSCKG-SLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLD 207
++A +S +G S +Y K + I + D+ MT
Sbjct: 110 LVAVMSHEGWSTLFADYIKNVIR---EISPKGIVVGGTKLDHITQYRRDFEKMT------ 160
Query: 208 DKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKG 241
+G Q + D V G+D I+GR ++ G
Sbjct: 161 IVSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAG 194
>4DF0-A nrPDB
Length = 202
Score = 67.1 bits (162), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 32/226 (14%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
L +LD K +++ + L + K D++ EG + + ++ N ++ D
Sbjct: 7 LVVALDTEVLK-AIDVAKRLKGAVAGFKVGWDLI----FEGGISIVGEIARYGNVIV--D 59
Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151
K AD+ + V R A HG + P + G + + +L
Sbjct: 60 LKIADVPHVASRVVEKLVNR---GACCVIVHGFLHPSLPRG------------QHVYVLV 104
Query: 152 ELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGD 211
+++ A Y + + S +D V GF+ G + E G
Sbjct: 105 KMT-----APTIYDEMWEKLLNSVQD-VRGFVLP---GNQPEVVAQARKRIGCSYRIISP 155
Query: 212 ALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWE 257
+G Q + G+D IVGR + + + +YR +E
Sbjct: 156 GIGPQGGRPGAAIEAGADFEIVGRYVL-EDPARISQWAQYRPTCFE 200
>3VE9-A nrPDB
Length = 215
Score = 67.1 bits (162), Expect = 8e-12, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 83/234 (35%), Gaps = 32/234 (13%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
+ SLD +E L L K+ +K +L + E VK L L L D
Sbjct: 4 VILSLDSPIPEETLR---KLNGKVAGIKVGWPLLLNLGKEK-VKELVGLVDGIKIL---D 56
Query: 92 RKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVG-PGIVSGLKQAAEEVTKEPRGLLML 150
K ADI NT+ L + + + AH VG G ++ L Q + L ++
Sbjct: 57 LKLADIDNTMILIVD----ELKDITNSFIAHAFVGVEGSLASLSQRVD--------LFLV 104
Query: 151 AELSCKG-SLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDK 209
+S G + A Y + ++A+ GF+A R + L
Sbjct: 105 LSMSHPGWNDAFYPYLR---EVARRVNP--KGFVAPA---TRPSMISRVKGDFPDKL-VI 155
Query: 210 GDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRC 263
+G Q + G+D IVGR ++ + E R E L C
Sbjct: 156 SPGVGTQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQ--EEVLSSC 207
>3F4W-A nrPDB
Length = 211
Score = 44.0 bits (102), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 26/220 (11%)
Query: 32 LCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNF-LLFE 90
L +LD T E + ++ + + +++ F + V +KA+ KY +
Sbjct: 3 LQLALDELTLPEAMVFMDKVVDDVDIIEVGTP----FLIREGVNAIKAIKEKYPHKEVLA 58
Query: 91 DRKFADIGN-TVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLM 149
D K D G+ +L + AG AD GV + +AA+E K+ +
Sbjct: 59 DAKIMDGGHFESQLLFDAG-------ADYVTVLGVTDVLTIQSCIRAAKEAGKQ-----V 106
Query: 150 LAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRD--EGYDWLIMTPGVGLD 207
+ ++ C L ++ A +D V Q+ G + + L + +
Sbjct: 107 VVDMICVDDL---PARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIA 163
Query: 208 DKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVE 247
G G +TV D G D++IVG + A
Sbjct: 164 VAG---GISSQTVKDYALLGPDVVIVGSAITHAADPAGEA 200
>1VQT-A nrPDB
Length = 213
Score = 43.3 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 17/158 (10%)
Query: 82 AKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVT 141
AK N + D KF DI +TV+ W V +G + ++
Sbjct: 55 AKRNLKIILDLKFCDIPSTVERSIK-------SWDHPAIIGFTV--HSCAGYESVERALS 105
Query: 142 KEPRGLLMLAELSCK-GSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIM 200
+ + ++ +L+ GSL +Y + K DFV + E I+
Sbjct: 106 ATDKHVFVVVKLTSMEGSLE--DYMDRIEKLNKLGCDFV---LPGPWAKALREKIKGKIL 160
Query: 201 TPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLF 238
PG+ ++ K D + + ++ ++GR ++
Sbjct: 161 VPGIRMEVKADDQKDV--VTLEEMKGIANFAVLGREIY 196
>4UJC-AB nrPDB
Length = 627
Score = 32.9 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 13 HPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFS 69
H V + H+ Q + + DVR ++ E+ ++LG +I + + F+
Sbjct: 421 HKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFT 477
>3FKJ-A nrPDB
Length = 347
Score = 30.9 bits (68), Expect = 0.59, Method: Composition-based stats.
Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 18/202 (8%)
Query: 18 AAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPL 77
A ++++ T LC D + E + P +S+ ++ L
Sbjct: 116 GAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQK--------AAYSLWLALEIL 167
Query: 78 KALS--AKYNFLLFEDRKFADIGNTVKLQYSAGVYRIA-EWADITNAHGVVGPGIVSGLK 134
A+Y+ L+ +F+D+ + + Q R A EW D + + G
Sbjct: 168 AQTEGYAQYDELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVY-------MMGSG 220
Query: 135 QAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEG 194
+ +E +L+ + S+ +GEY G +I + F++ + R D
Sbjct: 221 PSFGAAHQESICILLEMQWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPLDDRA 280
Query: 195 YDWLIMTPGVGLDDKGDALGQQ 216
++ G D LG Q
Sbjct: 281 IRFIERYQGKLQLIDADKLGIQ 302
>3QH2-A nrPDB
Length = 221
Score = 30.9 bits (68), Expect = 0.61, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 14/190 (7%)
Query: 70 MEGTVKPLKALSAKYNFLLFEDRK--FADIGNTVKLQYSAGVYRIAEWADITNAHGVVGP 127
+E + + + + +F+ +R ADI + L + G+ + +G V
Sbjct: 29 VEELARIIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRK-----LVMNGRVDI 83
Query: 128 GIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVI-GFIAQR 186
+ S + + + A + + V K D D+V+ G + +
Sbjct: 84 ALFSTIHRVQLPSG-SFSPKQIRARFPHLHIGRSVHSLEEAVQAEKEDADYVLFGHVFET 142
Query: 187 DMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVD---DVVSTGSDIIIVGRGLFAKGRD 243
D EG +++ + + T D DV G+D I V G+F+ +
Sbjct: 143 DCKKGLEGRGVSLLS-DIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSSA-E 200
Query: 244 AKVEGERYRK 253
RY +
Sbjct: 201 PLEAARRYSR 210
>2BA1-H nrPDB
Length = 259
Score = 30.5 bits (67), Expect = 0.78, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 63 DILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAH 122
DIL D + + L+ E RK I N ++ + + ++ +
Sbjct: 4 DILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLG------DTQ 57
Query: 123 GVVGPGIVSGLKQAAEEVTKEP-RGLLML-AELSCKGS--LATGEYTKGTVDIAKSDKDF 178
VVG + Q E P RG++++ AEL S G + ++++A+
Sbjct: 58 VVVGVKM-----QPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 179 V 179
+
Sbjct: 113 I 113
>3L9X-A nrPDB
Length = 413
Score = 30.2 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 10/176 (5%)
Query: 18 AAKLFNIMHEKQTNLCASLDVRTTKELLEL---VEALGPKICLLKTHVDILTDFSMEGTV 74
A L N + + QTNL + V+ L++ + I L + V+ + EG +
Sbjct: 69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGAL 128
Query: 75 KPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLK 134
K + +E R+ AD+ +Q V +A + T A V + L
Sbjct: 129 KTGRLALESLGLGPYEARERADVFRRFNIQM---VEEMAMVENDTKARAAVYKRTSAMLS 185
Query: 135 QAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGG 190
+ E R L L + G++T D ++ G + R G
Sbjct: 186 EII----TEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSSTSGGLVPRGSSG 237
>3T55-A nrPDB
Length = 272
Score = 29.0 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 164 YTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVD-- 221
+T+ D A VIG A+ M + + + PG+ A T D
Sbjct: 170 HTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLL 229
Query: 222 DVVSTGSDIIIVGRGLFAKGRDAKVEGER 250
G+D ++VG GL G +
Sbjct: 230 AYAGAGADAVLVGEGLVTSGDPRAAVADL 258
>1YVK-A nrPDB
Length = 163
Score = 29.0 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 10/122 (8%)
Query: 135 QAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEG 194
+ EE E LL+LA+ EY + D + G + R +
Sbjct: 9 ELGEETNDELYDLLLLAD---PSKDIVDEYLERGECYTAWAGDELAGVYV--LLKTRPQT 63
Query: 195 YDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKA 254
+ + + L KG ++ G+D I +G G + + Y+K
Sbjct: 64 VEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIG-----TGNSSIHQLSLYQKC 118
Query: 255 GW 256
G+
Sbjct: 119 GF 120
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.308 0.123 0.305
Lambda K H
0.267 0.0376 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,618,069
Number of Sequences: 36641
Number of extensions: 308982
Number of successful extensions: 925
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 46
length of query: 267
length of database: 10,336,785
effective HSP length: 95
effective length of query: 172
effective length of database: 6,855,890
effective search space: 1179213080
effective search space used: 1179213080
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 58 (27.1 bits)