BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P02753
(201 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
4PSQ-B nrPDB 389 e-109
1JYJ-A nrPDB 378 e-106
1FEM-A nrPDB 363 e-101
1IIU-A nrPDB 328 7e-91
2HZQ-A nrPDB 44 3e-05
4R0B-A nrPDB 39 0.001
6GQZ-A nrPDB 35 0.024
1GKA-B nrPDB 35 0.026
4IAX-A nrPDB 34 0.033
2ACO-A nrPDB 33 0.11
2RD7-C nrPDB 32 0.13
3MBT-A nrPDB 32 0.15
4K6M-A nrPDB 32 0.19
2K23-A nrPDB 32 0.21
1EW3-A nrPDB 32 0.23
3DTQ-A nrPDB 32 0.24
4HDG-A nrPDB 32 0.25
5MHH-A nrPDB 32 0.27
5L7O-C nrPDB 31 0.30
3GTN-A nrPDB 31 0.30
1JZU-A nrPDB 31 0.32
4GH7-A nrPDB 31 0.35
1OBQ-A nrPDB 31 0.37
1GM6-A nrPDB 31 0.37
5X7Y-A nrPDB 30 0.80
1Z24-A nrPDB 30 0.87
5N47-A nrPDB 29 1.3
1QWK-A nrPDB 28 1.9
2L9C-A nrPDB 28 2.1
1EPB-A nrPDB 28 2.4
5H9K-A nrPDB 27 5.8
4FDM-A nrPDB 27 6.4
5HGQ-A nrPDB 27 6.9
4PZK-A nrPDB 26 9.5
>4PSQ-B nrPDB
Length = 212
Score = 389 bits (998), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/186 (98%), Positives = 184/186 (98%)
Query: 16 GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATA 75
G ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATA
Sbjct: 27 GAMERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATA 86
Query: 76 KGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQ 135
KGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQ
Sbjct: 87 KGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQ 146
Query: 136 YSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGR 195
YSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGR
Sbjct: 147 YSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGR 206
Query: 196 SERNLL 201
SERNLL
Sbjct: 207 SERNLL 212
>1JYJ-A nrPDB
Length = 183
Score = 378 bits (971), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/182 (98%), Positives = 180/182 (98%)
Query: 19 ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGR 78
ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGR
Sbjct: 2 ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGR 61
Query: 79 VRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSC 138
VRLLNN DVCADMVGTFTDTEDPAKFKMKY GVASFLQKGNDDHWIVDTDYDTYAVQYSC
Sbjct: 62 VRLLNNLDVCADMVGTFTDTEDPAKFKMKYHGVASFLQKGNDDHWIVDTDYDTYAVQYSC 121
Query: 139 RLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSER 198
RLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSER
Sbjct: 122 RLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSER 181
Query: 199 NL 200
NL
Sbjct: 182 NL 183
>1FEM-A nrPDB
Length = 183
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/183 (92%), Positives = 177/183 (96%)
Query: 19 ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGR 78
ERDCRVSSFRVKENFDKARF+GTWYAMAKKDPEGLFLQDNIVAEFSVDE G MSATAKGR
Sbjct: 1 ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGR 60
Query: 79 VRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSC 138
VRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWI+DTDY+T+AVQYSC
Sbjct: 61 VRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSC 120
Query: 139 RLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSER 198
RLLNLDGTCADSYSFVF+RDP+G PE QKIVRQRQEELCLARQYRLI HNGYCDG+SER
Sbjct: 121 RLLNLDGTCADSYSFVFARDPSGFSPEVQKIVRQRQEELCLARQYRLIPHNGYCDGKSER 180
Query: 199 NLL 201
N+L
Sbjct: 181 NIL 183
>1IIU-A nrPDB
Length = 174
Score = 328 bits (842), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 150/172 (87%), Positives = 163/172 (94%)
Query: 21 DCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVR 80
DCRVSSF+VKENFDK R+SGTWYAMAKKDPEGLFLQDN+VA+F+VDE GQMSATAKGRVR
Sbjct: 2 DCRVSSFKVKENFDKNRYSGTWYAMAKKDPEGLFLQDNVVAQFTVDENGQMSATAKGRVR 61
Query: 81 LLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRL 140
L NNWDVCADM+G+FTDTEDPAKFKMKYWGVASFLQKGNDDHW+VDTDYDTYA+ YSCR
Sbjct: 62 LFNNWDVCADMIGSFTDTEDPAKFKMKYWGVASFLQKGNDDHWVVDTDYDTYALHYSCRE 121
Query: 141 LNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYC 192
LN DGTCADSYSFVFSRDP GLPPEAQKIVRQRQ +LCL R+YR+IVHNG+C
Sbjct: 122 LNEDGTCADSYSFVFSRDPKGLPPEAQKIVRQRQIDLCLDRKYRVIVHNGFC 173
>2HZQ-A nrPDB
Length = 174
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSAT-----AKGRVRLLN 83
V+ENFD ++ G WY + +K P I A +S+ E G++ A G V +
Sbjct: 11 VQENFDVNKYPGRWYEI-EKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQI- 68
Query: 84 NWDVCADMVGTFTDTEDPAKFKMKY-WGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLN 142
+ T + +PAK ++K+ W + S + I+ TDY+ YA+ YSC +
Sbjct: 69 ------EGEATPVNLTEPAKLEVKFSWFMPS------APYHILATDYENYALVYSCT--S 114
Query: 143 LDGTCADSYSFVFSRDPNGLPPEA 166
+ + ++++ +R+ LPPE
Sbjct: 115 ISQSFHVDFAWILARN-VALPPET 137
>4R0B-A nrPDB
Length = 169
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 28 RVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWD- 86
+ K++ + + +GTW++MA E + L + A V T + +L+ W+
Sbjct: 4 QTKQDLELPKLAGTWHSMAMATNE-ISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWEN 62
Query: 87 -VCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTY 132
C + TE+P KFK+ Y VA ++ ++DTDYD +
Sbjct: 63 NSCVEKKVLGEKTENPKKFKINY-TVA-------NEATLLDTDYDNF 101
>6GQZ-A nrPDB
Length = 174
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 29/126 (23%)
Query: 24 VSSFRVKENFDKARFSGTWYAMA---------KKDPEGLFLQDNIVAEFSVDETGQMSAT 74
+S +++NF +F G WY + KDP + + E D++ ++
Sbjct: 9 LSKVPLQQNFQDNQFHGKWYVVGFAENIQQREDKDPPKMIA---TIYELKEDKSYNVTNV 65
Query: 75 AKGRVRLLNNWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYD 130
A +NW+ C + TF P +F + G+ S+L + +V T+Y+
Sbjct: 66 A-------SNWEKCTYRIKTFVPGSQPGEFTLGEIKSRPGMTSYLVR------VVSTNYN 112
Query: 131 TYAVQY 136
+A+ +
Sbjct: 113 QHAMVF 118
>1GKA-B nrPDB
Length = 174
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 124 IVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQY 183
+++TDY+TY+ YSC + D ++ ++FVFSR P P +K + ++
Sbjct: 105 VIETDYETYSCVYSC--ITTDNYKSE-FAFVFSRTPQTSGPAVEKTAAVFNKNGVEFSKF 161
Query: 184 RLIVHNGYCDGRS 196
+ H C R+
Sbjct: 162 VPVSHTAECVYRA 174
>4IAX-A nrPDB
Length = 188
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 24 VSSFRVKENFDKARFSGTWY-------AMAKKDPEGLFLQDNIVAEFSVDETGQMSATAK 76
+S +++NF +F G WY A DPE L L + + E TA
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYQVGRAGNAAPPMDPELLLL---TAQTYELKEDKSYDVTA- 68
Query: 77 GRVRLLNNWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYDTY 132
VR +C + TF + P +F + Y G+ S+ + +V T+Y+ +
Sbjct: 69 --VRFRKK--MCEYLTMTFVPSPQPGEFTLGNIKNYPGLTSYFVR------VVSTNYNQH 118
Query: 133 AVQY 136
A+ +
Sbjct: 119 AMVF 122
>2ACO-A nrPDB
Length = 173
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVC 88
V NFD R+ GTWY +A+ D + + A +S+ + G ++ KG W
Sbjct: 26 VVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQ-Q 84
Query: 89 ADMVGTFTDTEDPAKFKMKYWG 110
++ FT A K+ ++G
Sbjct: 85 SEGKAYFTGAPTRAALKVSFFG 106
>2RD7-C nrPDB
Length = 184
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETG-QMSATAKGRVRLL 82
+S+ + K NFD +F+GTW +A + AE + Q +A A R L
Sbjct: 15 ISTIQPKANFDAQQFAGTWLLVAVGSACRFLQEQGHRAEATTLHVAPQGTAMAVSTFRKL 74
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
+ +C + + DT +F ++ +G + +TDY ++AV Y
Sbjct: 75 DG--ICWQVRQLYGDTGVLGRFLLQARDA-----RGAVHVVVAETDYQSFAVLY 121
>3MBT-A nrPDB
Length = 168
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVC 88
V NFD R+ GTWY +A+ D + + A +S+ + G ++ KG W
Sbjct: 12 VVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQ-Q 70
Query: 89 ADMVGTFTDTEDPAKFKMKYWG 110
++ FT A K+ ++G
Sbjct: 71 SEGKAYFTGAPTRAALKVSFFG 92
>4K6M-A nrPDB
Length = 915
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 13 LGSG-RAERDCRVSSF--RVKENFDKAR--FSGTWYAMAKKDPEGLFLQDNIVAEFSVDE 67
LGSG RA V S ++K+ K + F+ TW+ KDPE + + V
Sbjct: 260 LGSGTRAVGKGEVHSNQEKIKKRIQKLKEEFATTWH----KDPEHPYRTWTYHGSYEVKA 315
Query: 68 TGQMSATAKGRVRLLNN-WDVCADMVG-TFTDT 98
TG S+ G V+L++ WD A++ TDT
Sbjct: 316 TGSASSLVNGVVKLMSKPWDAIANVTTMAMTDT 348
>2K23-A nrPDB
Length = 178
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 26 SFRVKENFDKARFSGTWYAMA------KKDPEGLFLQDNIVAEFSVDETGQMSATAKGRV 79
S ++ F RF G W+ + +K+ + F + + E D + +++
Sbjct: 15 SVPLQPGFWTERFQGRWFVVGLAGNAVQKERQSRFTMYSTIYELQEDNSYNVTS------ 68
Query: 80 RLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
+L C + TF + P +F + + S+ Q + D + DTDYD +A+ +
Sbjct: 69 -ILVRGQGCRYWIRTFVPSSRPGQFTLG--NIHSYPQIQSYDVQVADTDYDQFAMVF 122
>1EW3-A nrPDB
Length = 159
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 40/158 (25%)
Query: 32 NFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDV---- 87
NFD ++ SG WY+ +FL ++ + ++E G M +R L+N +
Sbjct: 5 NFDISKISGEWYS--------IFLASDVKEK--IEENGSMRVFV-DVIRALDNSSLYAEY 53
Query: 88 -------CADMVGTFTDTEDPAKFKMKY--WGVASFLQKGNDDHWIVDTDYDTYAVQYSC 138
C + F TE+ + + Y + V + ND+H I+
Sbjct: 54 QTKVNGECTEFPMVFDKTEEDGVYSLNYDGYNVFRISEFENDEHIIL------------- 100
Query: 139 RLLNLDGTCADSYSFVFSRDPNGLP---PEAQKIVRQR 173
L+N D ++R+P+ P E KIV++R
Sbjct: 101 YLVNFDKDRPFQLFEFYAREPDVSPEIKEEFVKIVQKR 138
>3DTQ-A nrPDB
Length = 186
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAK---------KDPEGLFLQDNIVAEFSVDETGQMSAT 74
+S +++NF +F G WY + + KDP+ + Q + E D++ ++A
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYQVGRAGNAALREDKDPQKMTAQ---IYELKEDKSYNVTAV 69
Query: 75 AKGRVRLLNNWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYD 130
R R C TF P +F + Y G+ S+L + +V T+Y+
Sbjct: 70 ---RFR----KKKCDYATMTFVPGSQPGEFTLGNIKSYPGLTSYLVR------VVSTNYN 116
Query: 131 TYAVQY 136
+A+ +
Sbjct: 117 QHAMVF 122
>4HDG-A nrPDB
Length = 639
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 35 KARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNN-WDVCADMVG 93
K F+ TW+ KDPE + + V TG S+ G V+L++ WD A++
Sbjct: 21 KEEFATTWH----KDPEHPYRTWTYHGSYEVKATGSASSLVNGVVKLMSKPWDAIANVTT 76
Query: 94 -TFTDT 98
TDT
Sbjct: 77 MAMTDT 82
>5MHH-A nrPDB
Length = 188
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 24 VSSFRVKENFDKARFSGTWYAMA---------KKDPEGLFLQDNIVAEFSVDETGQMSAT 74
+S +++NF +F G WY + KDP+ +F + E D++ +++
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGFAGNAILREDKDPQKMFA---TIYELKEDKSYNVTSV 69
Query: 75 AKGRVRLLNNWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYD 130
+ + C + TF P +F + Y G+ S+L + +V T+Y+
Sbjct: 70 LFRKKK-------CDYWIRTFVPGSQPGEFTLGNIKSYPGLTSYLVR------VVSTNYN 116
Query: 131 TYAVQY 136
+A+ +
Sbjct: 117 QHAMVF 122
>5L7O-C nrPDB
Length = 285
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 8 LLLAALGSGRAERDCRVSSFR-VKENFDKARFSGTWYAMAK----KDPEGLFLQDNIVAE 62
LL A G + R V +FR VK N+ R T++ D +G ++D V
Sbjct: 106 LLAYATGFFKYWRGGLVYTFRFVKTNYHSGRVQITFHPFVGYDDVMDSDGKIVRDEYVYR 165
Query: 63 FSVDETGQMSATAKGRVRLLNNWDVCADM 91
VD Q AT L + VCAD+
Sbjct: 166 VVVDLRDQTEATLVVPFTSLTPYKVCADV 194
>3GTN-A nrPDB
Length = 401
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 72 SATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND 120
SA G + + W+ +DMV TF D + ++KY A++ Q ND
Sbjct: 72 SAVKHGAIVFASPWNPPSDMVETFNRNGDTSAKRLKYNKYAAYAQHLND 120
>1JZU-A nrPDB
Length = 157
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 34 DKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVG 93
D++ +G WY +A FL++ + ++ + + + C
Sbjct: 5 DRSEIAGKWYVVALASNTEFFLREKDKMKMAMARISFLGEDELKVSYAVPKPNGCRKWET 64
Query: 94 TFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSF 153
TF T D G + ++ ++DTDY +YAV Y+ R+ DG
Sbjct: 65 TFKKTSDD--------GEVYYSEEAKKKVEVLDTDYKSYAVIYATRV--KDGRTLHMMRL 114
Query: 154 VFSRDPNGLPPEAQKIVRQ 172
+SR P + P A I R+
Sbjct: 115 -YSRSPE-VSPAATAIFRK 131
>4GH7-A nrPDB
Length = 188
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAK---------KDPEGLFLQDNIVAEFSVDETGQMSAT 74
+S +++NF +F G WY + K KDP + + E D++ ++
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGKAGNHDLREDKDPRKM---QATIYELKEDKSYNVT-- 67
Query: 75 AKGRVRLLNNWDVCADMVGTFTDTEDPAKFKM---KYW-GVASFLQKGNDDHWIVDTDYD 130
VR ++ C + TF P +F + K W G+ S+L + +V T+Y+
Sbjct: 68 ---NVRFVH--KKCNYRIWTFVPGSQPGEFTLGNIKSWPGLTSWLVR------VVSTNYN 116
Query: 131 TYAVQYSCRL 140
+A+ + R+
Sbjct: 117 QHAMVFFKRV 126
>1OBQ-A nrPDB
Length = 181
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 124 IVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPN 160
I++TDY YA YSC N G +D +SF+FSR N
Sbjct: 107 ILETDYSNYACLYSCIDYNF-GYHSD-FSFIFSRSAN 141
>1GM6-A nrPDB
Length = 175
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 41/172 (23%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDV- 87
V NFD ++ +G WY++ L D A+ +++E G M + +R+L+N +
Sbjct: 9 VTSNFDASKIAGEWYSI-------LLASD---AKENIEENGSMRVFVE-HIRVLDNSSLA 57
Query: 88 ----------CADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYS 137
C D D + + Y+G F +++ +Y Y + +
Sbjct: 58 FKFQRKVNGECTDFYAVCDKVGDGV-YTVAYYGENKF--------RLLEVNYSDYVILH- 107
Query: 138 CRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHN 189
L++++G + R P+ P K V E+C +QY +I N
Sbjct: 108 --LVDVNGDKTFQLMEFYGRKPDVEPKLKDKFV-----EIC--QQYGIIKEN 150
>5X7Y-A nrPDB
Length = 177
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 39/169 (23%)
Query: 14 GSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSA 73
GS E D VK NFD ++ SG WY+ + L +I + ++E G M
Sbjct: 1 GSHEEENDV------VKGNFDISKISGDWYS--------ILLASDIKEK--IEENGSMRV 44
Query: 74 TAKGRVRLLNNWDV-----------CADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDH 122
K + +L+N + C + TE ++ + + G F
Sbjct: 45 FVKD-IEVLSNSSLIFTMHTKVNGKCTKISLICNKTEKDGEYDVVHDGYNLF-------- 95
Query: 123 WIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVR 171
I++T Y+ Y + + L N++ ++ R P+ P +K VR
Sbjct: 96 RIIETAYEDYIIFH---LNNVNQEQEFQLMELYGRKPDVSPKVKEKFVR 141
>1Z24-A nrPDB
Length = 189
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 32 NFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADM 91
+FD + F+G W+ +AK E +AE+ D G+ ++ V V M
Sbjct: 17 DFDLSAFAGAWHEIAKLPLENENQGKCTIAEYKYD--GKKASVYNSFVSN----GVKEYM 70
Query: 92 VGTFTDTEDPAKFKM-KYWGVASFLQKG-NDDHWIVDTDYDTYAVQYSC 138
G D K KY F Q+ N W++ TDY YA+ Y+C
Sbjct: 71 EGDLEIAPDAKYTKQGKYVMTFKFGQRVVNLVPWVLATDYKNYAINYNC 119
>5N47-A nrPDB
Length = 188
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAK---------KDPEGLFLQDNIVAEFSVDETGQMSAT 74
+S +++NF +F G WY + + KDP ++ + E D++ +++
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGEAGNSLLREDKDPRKMYA---TIYELKEDKSYNVTS- 68
Query: 75 AKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYW----GVASFLQKGNDDHWIVDTDYD 130
VR + C ++ TF P +F + G SFL + +V T+Y+
Sbjct: 69 ----VRFRSK--KCHYLIRTFVPGSQPGEFTLGLIKSKPGHTSFLVR------VVSTNYN 116
Query: 131 TYAVQY 136
+A+ +
Sbjct: 117 QHAMVF 122
>1QWK-A nrPDB
Length = 317
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 7 LLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAK----KDPEGLFLQD 57
+LL AL G A + R+KENF+ FS T +AK K+ + LFLQD
Sbjct: 248 VLLRYALDRGCAILPKSIQENRIKENFEVFDFSLTEEDIAKLEESKNSQRLFLQD 302
>2L9C-A nrPDB
Length = 176
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/160 (18%), Positives = 67/160 (41%), Gaps = 13/160 (8%)
Query: 23 RVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLL 82
R + ++ NF+ + +G WY + + ++++ V+ + + + ++
Sbjct: 14 REEASSMERNFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLENSLALKFHII 73
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLN 142
N + C+++ TE ++ + Y G +F I+ TDYD Y + L+N
Sbjct: 74 INEE-CSEIFLVADKTEKAGEYSVTYDGSNTF--------TILKTDYDNYIM---IHLIN 121
Query: 143 LDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQ 182
++ R+P+ L + ++ Q EE + R+
Sbjct: 122 KKDGETFQLMELYGREPD-LSSDIKEKFAQLSEEHGIVRE 160
>1EPB-A nrPDB
Length = 164
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 22/113 (19%)
Query: 29 VKENFDKARFSGTWYAMA---KKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNW 85
V ++FD ++F G WY +A K GL ++ ++ G M K + L
Sbjct: 2 VVKDFDISKFLGFWYEIAFASKMGTPGLAHKE--------EKMGAMVVELKENLLALTTT 53
Query: 86 ----DVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAV 134
D C T T+ + PAKF++ G + + TDY TYA+
Sbjct: 54 YYSEDHCVLEKVTATEGDGPAKFQVTRLS-------GKKEVVVEATDYLTYAI 99
>5H9K-A nrPDB
Length = 156
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 28/161 (17%)
Query: 22 CRVSSFRVKENFDKARF-SGTWYAMAKKDPEGLFLQDNIVAEFSVDETG---QMSATAKG 77
C S ++ FD RF +G WY +D E + +TG Q++ K
Sbjct: 10 CNALSGKIMSGFDANRFFTGDWYLTHSRDSE-------VPVRCEKYQTGSNLQLNFNGK- 61
Query: 78 RVRLLNNWDV-CADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
N DV C+ T + + F+ SF +V+TDY YA+ Y
Sbjct: 62 ------NGDVKCSG--STVSGNQGFYSFQCTTTSGGSFTSY----MAVVETDYANYALLY 109
Query: 137 SCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEEL 177
C L T D++ +F+R +G P A + Q EL
Sbjct: 110 RCGLYG-STTPKDNF-LLFNRQSSGEIP-AGLSTKLNQLEL 147
>4FDM-A nrPDB
Length = 394
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 104 FKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTC 147
F KYWG +G+ + W+ D Y TY + N D C
Sbjct: 31 FGFKYWGGV----RGDIEQWLNDNGYRTYTLAVGPLSSNWDRAC 70
>5HGQ-A nrPDB
Length = 524
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 52 GLFLQDNIVAE-FSVDETGQMSATAK------GRVRLLNNWDVCADMVGTFTDTEDPAKF 104
G FL+ ++ F MS AK G + V ++V +T+ DP
Sbjct: 384 GEFLEPTFISPTFLTGHPQIMSPLAKWHRSIPGLTERFELFVVTKEIVNAYTELNDPLTQ 443
Query: 105 KMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSC 138
++++ A Q G+D+ +D +Y T A++Y
Sbjct: 444 RLRFDEQAKQKQAGDDEAQNIDENYCT-ALEYGL 476
>4PZK-A nrPDB
Length = 170
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 105 KMKYW-GVASFLQKGNDDHWIVDTDYDT---YAVQYSCRLLNLDGTCADSYSFVFSRDPN 160
K+ Y+ + F +K D + T Y A YS R Y FVF R+ N
Sbjct: 57 KITYYDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKR--------EKDYYFVFGRETN 108
Query: 161 GLP 163
GLP
Sbjct: 109 GLP 111
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
4PSQ-B nrPDB 340 3e-94
1FEM-A nrPDB 327 1e-90
1JYJ-A nrPDB 326 4e-90
1IIU-A nrPDB 302 7e-83
2HZQ-A nrPDB 149 8e-37
4R0B-A nrPDB 115 2e-26
Sequences not found previously or not previously below threshold:
1GKA-B nrPDB 60 7e-10
1EXS-A nrPDB 54 5e-08
1Z24-A nrPDB 54 5e-08
1OBQ-A nrPDB 51 3e-07
1BBP-A nrPDB 47 4e-06
1N0S-A nrPDB 44 4e-05
3MBT-A nrPDB 44 6e-05
2ACO-A nrPDB 44 6e-05
1JZU-A nrPDB 43 9e-05
1KXO-A nrPDB 42 1e-04
2L9C-A nrPDB 39 0.001
1EW3-A nrPDB 39 0.001
1EPB-A nrPDB 39 0.002
6GQZ-A nrPDB 38 0.002
2RD7-C nrPDB 38 0.002
5X7Y-A nrPDB 38 0.002
3SAO-A nrPDB 38 0.003
4IAX-A nrPDB 37 0.005
2K23-A nrPDB 37 0.005
3EBK-A nrPDB 37 0.006
4QAE-A nrPDB 36 0.009
1GM6-A nrPDB 36 0.011
4GH7-A nrPDB 36 0.011
3O22-A nrPDB 36 0.013
5N48-A nrPDB 35 0.028
3L4R-A nrPDB 34 0.031
3DTQ-A nrPDB 34 0.048
3KFG-A nrPDB 34 0.058
5MHH-A nrPDB 33 0.078
2E4J-A nrPDB 33 0.096
5H9K-A nrPDB 32 0.13
1AVG-I nrPDB 31 0.28
5N47-A nrPDB 30 0.44
4MVK-A nrPDB 30 0.54
4MVL-A nrPDB 30 0.82
4RUN-A nrPDB 30 0.92
6NU3-AX nrPDB 28 2.7
6IGZ-7 nrPDB 28 2.8
5NKN-A nrPDB 27 4.0
6BQ5-A nrPDB 27 5.0
>4PSQ-B nrPDB
Length = 212
Score = 340 bits (871), Expect = 3e-94, Method: Composition-based stats.
Identities = 184/186 (98%), Positives = 184/186 (98%)
Query: 16 GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATA 75
G ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATA
Sbjct: 27 GAMERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATA 86
Query: 76 KGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQ 135
KGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQ
Sbjct: 87 KGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQ 146
Query: 136 YSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGR 195
YSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGR
Sbjct: 147 YSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGR 206
Query: 196 SERNLL 201
SERNLL
Sbjct: 207 SERNLL 212
>1FEM-A nrPDB
Length = 183
Score = 327 bits (839), Expect = 1e-90, Method: Composition-based stats.
Identities = 169/183 (92%), Positives = 177/183 (96%)
Query: 19 ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGR 78
ERDCRVSSFRVKENFDKARF+GTWYAMAKKDPEGLFLQDNIVAEFSVDE G MSATAKGR
Sbjct: 1 ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGR 60
Query: 79 VRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSC 138
VRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWI+DTDY+T+AVQYSC
Sbjct: 61 VRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSC 120
Query: 139 RLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSER 198
RLLNLDGTCADSYSFVF+RDP+G PE QKIVRQRQEELCLARQYRLI HNGYCDG+SER
Sbjct: 121 RLLNLDGTCADSYSFVFARDPSGFSPEVQKIVRQRQEELCLARQYRLIPHNGYCDGKSER 180
Query: 199 NLL 201
N+L
Sbjct: 181 NIL 183
>1JYJ-A nrPDB
Length = 183
Score = 326 bits (836), Expect = 4e-90, Method: Composition-based stats.
Identities = 180/183 (98%), Positives = 180/183 (98%)
Query: 18 AERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKG 77
ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKG
Sbjct: 1 MERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKG 60
Query: 78 RVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYS 137
RVRLLNN DVCADMVGTFTDTEDPAKFKMKY GVASFLQKGNDDHWIVDTDYDTYAVQYS
Sbjct: 61 RVRLLNNLDVCADMVGTFTDTEDPAKFKMKYHGVASFLQKGNDDHWIVDTDYDTYAVQYS 120
Query: 138 CRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSE 197
CRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSE
Sbjct: 121 CRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSE 180
Query: 198 RNL 200
RNL
Sbjct: 181 RNL 183
>1IIU-A nrPDB
Length = 174
Score = 302 bits (773), Expect = 7e-83, Method: Composition-based stats.
Identities = 150/172 (87%), Positives = 163/172 (94%)
Query: 21 DCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVR 80
DCRVSSF+VKENFDK R+SGTWYAMAKKDPEGLFLQDN+VA+F+VDE GQMSATAKGRVR
Sbjct: 2 DCRVSSFKVKENFDKNRYSGTWYAMAKKDPEGLFLQDNVVAQFTVDENGQMSATAKGRVR 61
Query: 81 LLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRL 140
L NNWDVCADM+G+FTDTEDPAKFKMKYWGVASFLQKGNDDHW+VDTDYDTYA+ YSCR
Sbjct: 62 LFNNWDVCADMIGSFTDTEDPAKFKMKYWGVASFLQKGNDDHWVVDTDYDTYALHYSCRE 121
Query: 141 LNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYC 192
LN DGTCADSYSFVFSRDP GLPPEAQKIVRQRQ +LCL R+YR+IVHNG+C
Sbjct: 122 LNEDGTCADSYSFVFSRDPKGLPPEAQKIVRQRQIDLCLDRKYRVIVHNGFC 173
>2HZQ-A nrPDB
Length = 174
Score = 149 bits (376), Expect = 8e-37, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSAT-----AKGRVRLLN 83
V+ENFD ++ G WY + +K P I A +S+ E G++ A G V +
Sbjct: 11 VQENFDVNKYPGRWYEI-EKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQI- 68
Query: 84 NWDVCADMVGTFTDTEDPAKFKMKY-WGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLN 142
+ T + +PAK ++K+ W + S + I+ TDY+ YA+ YSC +
Sbjct: 69 ------EGEATPVNLTEPAKLEVKFSWFMPS------APYHILATDYENYALVYSCT--S 114
Query: 143 LDGTCADSYSFVFSRDPNGLPPEA 166
+ + ++++ +R+ LPPE
Sbjct: 115 ISQSFHVDFAWILARN-VALPPET 137
>4R0B-A nrPDB
Length = 169
Score = 115 bits (287), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 28 RVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWD- 86
+ K++ + + +GTW++MA E + L + A V T + +L+ W+
Sbjct: 4 QTKQDLELPKLAGTWHSMAMATNE-ISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWEN 62
Query: 87 -VCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTY 132
C + TE+P KFK+ Y VA ++ ++DTDYD +
Sbjct: 63 NSCVEKKVLGEKTENPKKFKINY-TVA-------NEATLLDTDYDNF 101
>1GKA-B nrPDB
Length = 174
Score = 59.8 bits (143), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 12/147 (8%)
Query: 23 RVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQ-MSATAKGRVRL 81
+ +S ++NFD R++G WY + + I + + T G
Sbjct: 11 KCASVANQDNFDLRRYAGRWYQTHIIENAYQPVTRCIHSNYEYSTNDYGFKVTTAGFNP- 69
Query: 82 LNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLL 141
N+ + D T A + V + +++TDY+TY+ YSC
Sbjct: 70 -NDEYLKIDFKVYPTKEFPAAHMLIDAPSV------FAAPYEVIETDYETYSCVYSCITT 122
Query: 142 NLDGTCADSYSFVFSRDPNGLPPEAQK 168
+ ++FVFSR P P +K
Sbjct: 123 D---NYKSEFAFVFSRTPQTSGPAVEK 146
>1EXS-A nrPDB
Length = 160
Score = 54.0 bits (128), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 32 NFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNW--DVCA 89
D + +GTW+ +A + + L D + G LL D CA
Sbjct: 9 ELDTQKVAGTWHTVAMAVSD-VSLLDAKSSPLKAYVEGLKPTPEGDLEILLQKRENDKCA 67
Query: 90 DMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAV 134
V T+ PA FK+ + +++DTDYD++ +
Sbjct: 68 QEVLLAKKTDIPAVFKIN--------ALDENQLFLLDTDYDSHLL 104
>1Z24-A nrPDB
Length = 189
Score = 54.0 bits (128), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 32 NFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADM 91
+FD + F+G W+ +AK E +AE+ D G+ ++ V + D+
Sbjct: 17 DFDLSAFAGAWHEIAKLPLENENQGKCTIAEYKYD--GKKASVYNSFVSNGVKEYMEGDL 74
Query: 92 VGTF-TDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADS 150
K+ M + + N W++ TDY YA+ Y+C + D
Sbjct: 75 EIAPDAKYTKQGKYVMTFKF---GQRVVNLVPWVLATDYKNYAINYNC-DYHPDKKAHSI 130
Query: 151 YSFVFSRDPNGLPPEAQKIV 170
++++ S+ L +++V
Sbjct: 131 HAWILSKSKV-LEGNTKEVV 149
>1OBQ-A nrPDB
Length = 181
Score = 50.9 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 30 KENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCA 89
++ ++ ++G WY A + ++ + E+S G+ ++ + +
Sbjct: 23 EQTPNRNSYAGVWYQFALTNNPYQLIEKCVRNEYSF----------DGKQFVIESTGIAY 72
Query: 90 DMVGTFTDTE-DPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCA 148
D + + P F + + + I++TDY YA YSC N
Sbjct: 73 DGNLLKRNGKLYPNPFGEPHLSI-DYENSFAAPLVILETDYSNYACLYSCIDYNFG--YH 129
Query: 149 DSYSFVFSRDPN 160
+SF+FSR N
Sbjct: 130 SDFSFIFSRSAN 141
>1BBP-A nrPDB
Length = 173
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 13/142 (9%)
Query: 31 ENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCAD 90
+NFD + + G W+ +AK AE+ T + + +++ + +
Sbjct: 15 DNFDWSNYHGKWWEVAKYPNSVEKYGKCGWAEY----TPEGKSVKVSNYHVIHGKEYFIE 70
Query: 91 MVGTFTDTEDPAKF--KMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCA 148
K K+ Y GV + ++ TD Y + Y C+ + D
Sbjct: 71 GTAYPVGDSKIGKIYHKLTYGGVTK-----ENVFNVLSTDNKNYIIGYYCK-YDEDKKGH 124
Query: 149 DSYSFVFSRDPNGLPPEAQKIV 170
+ +V SR L EA+ V
Sbjct: 125 QDFVWVLSRSKV-LTGEAKTAV 145
>1N0S-A nrPDB
Length = 184
Score = 44.0 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 15/143 (10%)
Query: 31 ENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCAD 90
+NFD +++ G W+ +AK AE+ T +G+ ++ +DV
Sbjct: 15 DNFDWSQYHGKWWEVAKYPSPNGKYGKCGWAEY----------TPEGKSVKVSRYDVIHG 64
Query: 91 MVGTFTDTEDP---AKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTC 147
T P +K Y ++ TD Y + YSCR + D
Sbjct: 65 KEYFMEGTAYPVGDSKIGKIYHSRTVGGYTRKTVFNVLSTDNKNYIIGYSCR-YDEDKKG 123
Query: 148 ADSYSFVFSRDPNGLPPEAQKIV 170
+ +V SR L EA+ V
Sbjct: 124 HWDHVWVLSRSMV-LTGEAKTAV 145
>3MBT-A nrPDB
Length = 168
Score = 43.6 bits (101), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVC 88
V NFD R+ GTWY +A+ D + + A +S+ + G ++ KG W
Sbjct: 12 VVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQ- 70
Query: 89 ADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCA 148
++ FT A K+ ++G G + +D +Y V R
Sbjct: 71 SEGKAYFTGAPTRAALKVSFFG----PFYGGYNVIALDREYRHALVSGPDR--------- 117
Query: 149 DSYSFVFSRDPN 160
Y ++ SR P
Sbjct: 118 -DYLWILSRTPT 128
>2ACO-A nrPDB
Length = 173
Score = 43.6 bits (101), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 15/132 (11%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVC 88
V NFD R+ GTWY +A+ D + + A +S+ + G ++ KG W
Sbjct: 26 VVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQ- 84
Query: 89 ADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCA 148
++ FT A K+ ++G + ++ D + Y C
Sbjct: 85 SEGKAYFTGAPTRAALKVSFFG------PFYGGYNVIALDRE-YRHALVCGPDR------ 131
Query: 149 DSYSFVFSRDPN 160
Y ++ SR P
Sbjct: 132 -DYLWILSRTPT 142
>1JZU-A nrPDB
Length = 157
Score = 43.2 bits (100), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 34 DKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVG 93
D++ +G WY +A FL++ + ++ + + + C
Sbjct: 5 DRSEIAGKWYVVALASNTEFFLREKDKMKMAMARISFLGEDELKVSYAVPKPNGCRKWET 64
Query: 94 TFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSF 153
TF T D G + ++ ++DTDY +YAV Y+ R+ + T
Sbjct: 65 TFKKTSDD--------GEVYYSEEAKKKVEVLDTDYKSYAVIYATRVKD-GRTLH--MMR 113
Query: 154 VFSRDPNGLPPEAQKIVRQ 172
++SR P + P A I R+
Sbjct: 114 LYSRSPE-VSPAATAIFRK 131
>1KXO-A nrPDB
Length = 184
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 9/140 (6%)
Query: 31 ENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCAD 90
+NFD +++ G W+ +A AE+ T + + R +++ + ++
Sbjct: 15 DNFDWSQYHGKWWQVAAYPDHITKYGKCGWAEY----TPEGKSVKVSRYSVIHGKEYFSE 70
Query: 91 MVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADS 150
K Y + Q+G ++ TD Y + Y C + D
Sbjct: 71 GTAYPVGDSKIGKIYHSY-TIGGVTQEGV--FNVLSTDNKNYIIGYFCS-YDEDKKGHMD 126
Query: 151 YSFVFSRDPNGLPPEAQKIV 170
+V SR L EA+ V
Sbjct: 127 LVWVLSRSMV-LTGEAKTAV 145
>2L9C-A nrPDB
Length = 176
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 19/119 (15%)
Query: 23 RVSSFRVKENFDKARFSGTWYAMAKKDP-----EGLFLQDNIVAEFSVDETGQMSATAKG 77
R + ++ NF+ + +G WY + E V V E A
Sbjct: 14 REEASSMERNFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLENS----LALK 69
Query: 78 RVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
++N + C+++ TE ++ + Y G++ I+ TDYD Y + +
Sbjct: 70 FHIIIN--EECSEIFLVADKTEKAGEYSVTY--------DGSNTFTILKTDYDNYIMIH 118
>1EW3-A nrPDB
Length = 159
Score = 39.0 bits (89), Expect = 0.001, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 31 ENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCAD 90
NFD ++ SG WY++ FL ++ ++E G M +R L+N + A+
Sbjct: 4 RNFDISKISGEWYSI--------FLASDVKE--KIEENGSMRVFVD-VIRALDNSSLYAE 52
Query: 91 --MVGTFTDTEDPAKF-KMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTC 147
TE P F K + GV S G + I + + D + + Y L+N D
Sbjct: 53 YQTKVNGECTEFPMVFDKTEEDGVYSLNYDGYNVFRISEFENDEHIILY---LVNFDKDR 109
Query: 148 ADSYSFVFSRDPNGLPPEAQ----KIVRQR 173
++R+P+ + PE + KIV++R
Sbjct: 110 PFQLFEFYAREPD-VSPEIKEEFVKIVQKR 138
>1EPB-A nrPDB
Length = 164
Score = 38.6 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVC 88
V ++FD ++F G WY +A G + + ++ + D C
Sbjct: 2 VVKDFDISKFLGFWYEIAFASKMGTPGLAHKEEKMGAMVV-ELKENLLALTTTYYSEDHC 60
Query: 89 ADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQ 135
T T+ + PAKF++ G + + TDY TYA+
Sbjct: 61 VLEKVTATEGDGPAKFQVT-------RLSGKKEVVVEATDYLTYAII 100
>6GQZ-A nrPDB
Length = 174
Score = 38.2 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDP----EGLFLQDNIVAEFSVDETGQMSATAKGRV 79
+S +++NF +F G WY + + E I + + E + T
Sbjct: 9 LSKVPLQQNFQDNQFHGKWYVVGFAENIQQREDKDPPKMIATIYELKEDKSYNVT----- 63
Query: 80 RLLNNWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYDTYAVQ 135
+ +NW+ C + TF P +F + G+ S+L + +V T+Y+ +A+
Sbjct: 64 NVASNWEKCTYRIKTFVPGSQPGEFTLGEIKSRPGMTSYLVR------VVSTNYNQHAMV 117
Query: 136 Y 136
+
Sbjct: 118 F 118
>2RD7-C nrPDB
Length = 184
Score = 38.2 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 15/179 (8%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAE-FSVDETGQMSATAKGRVRLL 82
+S+ + K NFD +F+GTW +A + AE ++ Q +A A R L
Sbjct: 15 ISTIQPKANFDAQQFAGTWLLVAVGSACRFLQEQGHRAEATTLHVAPQGTAMAVSTFRKL 74
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLN 142
+ +C + + DT +F ++ + +G + +TDY ++AV Y R
Sbjct: 75 DG--ICWQVRQLYGDTGVLGRFLLQ-----ARDARGAVHVVVAETDYQSFAVLYLERAGQ 127
Query: 143 LDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSERNLL 201
L Y+ + L Q++ QE Q G+C+ + ++L
Sbjct: 128 LSVKL---YARSLPVSDSVLSGFEQRV----QEAHLTEDQIFYFPKYGFCEAADQFHVL 179
>5X7Y-A nrPDB
Length = 177
Score = 38.2 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 21/151 (13%)
Query: 29 VKENFDKARFSGTWYAM--AKKDPEGLF---LQDNIVAEFSVDETGQMSATAKGRVRLLN 83
VK NFD ++ SG WY++ A E + V + V + T +V
Sbjct: 10 VKGNFDISKISGDWYSILLASDIKEKIEENGSMRVFVKDIEVLSNSSLIFTMHTKVN--- 66
Query: 84 NWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNL 143
C + TE ++ + + G + I++T Y+ Y + + L N+
Sbjct: 67 --GKCTKISLICNKTEKDGEYDV--------VHDGYNLFRIIETAYEDYIIFH---LNNV 113
Query: 144 DGTCADSYSFVFSRDPNGLPPEAQKIVRQRQ 174
+ ++ R P+ P +K VR Q
Sbjct: 114 NQEQEFQLMELYGRKPDVSPKVKEKFVRYCQ 144
>3SAO-A nrPDB
Length = 160
Score = 37.8 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 34 DKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVG 93
D++ +G WY +A FL + + + + + C
Sbjct: 4 DRSEVAGKWYIVALASNTDFFLAEKGKMKMVMARISFLGEDELEVSYAAPSPKGCRKWET 63
Query: 94 TFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSF 153
TF T D G + ++ ++DTDY +YAV ++ R+ + T +
Sbjct: 64 TFKKTSDD--------GEVYYSEEAEKTVEVLDTDYKSYAVIFATRVKD-GRTLHMMRLY 114
Query: 154 VFSRDPNGLPPEAQKIVRQRQEE 176
SR+ + P A I R+ E
Sbjct: 115 SRSRE---VSPTAMAIFRKLARE 134
>4IAX-A nrPDB
Length = 188
Score = 37.0 bits (84), Expect = 0.005, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKK-------DPEGLFLQDNIVAEFSVDETGQMSATAK 76
+S +++NF +F G WY + + DPE L L + + E TA
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYQVGRAGNAAPPMDPELLLLTAQ---TYELKEDKSYDVTA- 68
Query: 77 GRVRLLNNWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYDTY 132
+ +C + TF + P +F + Y G+ S+ + +V T+Y+ +
Sbjct: 69 ----VRFRKKMCEYLTMTFVPSPQPGEFTLGNIKNYPGLTSYFVR------VVSTNYNQH 118
Query: 133 AVQY 136
A+ +
Sbjct: 119 AMVF 122
>2K23-A nrPDB
Length = 178
Score = 37.0 bits (84), Expect = 0.005, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 26 SFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRL---L 82
S ++ F RF G W+ + +Q + F++ T + L
Sbjct: 15 SVPLQPGFWTERFQGRWFVVGLAGN---AVQKERQSRFTMYST-IYELQEDNSYNVTSIL 70
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
C + TF + P +F + + S+ Q + D + DTDYD +A+ +
Sbjct: 71 VRGQGCRYWIRTFVPSSRPGQFTLG--NIHSYPQIQSYDVQVADTDYDQFAMVF 122
>3EBK-A nrPDB
Length = 176
Score = 37.0 bits (84), Expect = 0.006, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 13/107 (12%)
Query: 32 NFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADM 91
N D RF G+W +A E L + FS D V +
Sbjct: 19 NLDYERFRGSWI-IAAGTSEALTQYKCWIDRFSYD---------DALVSKYTDSQGKNRT 68
Query: 92 VGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSC 138
+ KF + Y + + + ++ TDY+ YA+ C
Sbjct: 69 TIRGRTKFEGNKFTIDY---NDKGKAFSAPYSVLATDYENYAIVEGC 112
>4QAE-A nrPDB
Length = 188
Score = 36.3 bits (82), Expect = 0.009, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGL-FLQDNIVAEFSVDETGQMSATAKGRVRLL 82
+S +++NF +F G WY + E L +D + ++ E + + ++
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGLAGNEVLREDKDPMKMWATIYELEEDKSY--NVTIVM 70
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
+ C + TF P +F + G+ S + + +V T+Y+ +A+ +
Sbjct: 71 PLAEKCEYLFQTFVPGSQPGEFTLG--GIKSGPGRTSGLVRVVSTNYNQHAMVF 122
>1GM6-A nrPDB
Length = 175
Score = 35.9 bits (81), Expect = 0.011, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 29/166 (17%)
Query: 29 VKENFDKARFSGTWYAM-----AKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLN 83
V NFD ++ +G WY++ AK++ E V V + ++ + +V
Sbjct: 9 VTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVN--- 65
Query: 84 NWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNL 143
C D D GV + G + +++ +Y Y + + L+++
Sbjct: 66 --GECTDFYAVCDKVGD---------GVYTVAYYGENKFRLLEVNYSDYVILH---LVDV 111
Query: 144 DGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLIVHN 189
+G + R P+ P K V E+C +QY +I N
Sbjct: 112 NGDKTFQLMEFYGRKPDVEPKLKDKFV-----EIC--QQYGIIKEN 150
>4GH7-A nrPDB
Length = 188
Score = 35.9 bits (81), Expect = 0.011, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGL-FLQDNIVAEFSVDETGQMSATAKGRVRLL 82
+S +++NF +F G WY + K L +D + ++ E + + VR +
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGKAGNHDLREDKDPRKMQATIYELKEDKSYNVTNVRFV 72
Query: 83 NNWDVCADMVGTFTDTEDPAKF---KMKYW-GVASFLQKGNDDHWIVDTDYDTYAVQY 136
+ C + TF P +F +K W G+ S+L + +V T+Y+ +A+ +
Sbjct: 73 HK--KCNYRIWTFVPGSQPGEFTLGNIKSWPGLTSWLVR------VVSTNYNQHAMVF 122
>3O22-A nrPDB
Length = 162
Score = 35.9 bits (81), Expect = 0.013, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGR--VRLLNNWD 86
V+ NF + +F G W++ A S+ ++ AT G +
Sbjct: 2 VQPNFQQDKFLGRWFSAGLASNSSW--LREKKAALSMAKSVVAPATDGGLNLTSTFLRKN 59
Query: 87 VCAD--MVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYS 137
C M+ + ++ +WG + +V+TDYD YA+ YS
Sbjct: 60 QCETRTMLLQPAGSLGSYSYRSPHWGSTYSVS-------VVETDYDQYALLYS 105
>5N48-A nrPDB
Length = 188
Score = 34.7 bits (78), Expect = 0.028, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLN 83
+S +++NF +F G WY + + L +D A+ + +++
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGRAGNMRLR-EDKDPAKMVATIYELKEDKSYNVTKVMF 71
Query: 84 NWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
C M+ TF P +F + + S + +V T+Y+ +A+ +
Sbjct: 72 QRKKCKYMINTFVPGSQPGEFTLG--AIKSPPGPTSTLVRVVSTNYNQHAMVF 122
>3L4R-A nrPDB
Length = 170
Score = 34.3 bits (77), Expect = 0.031, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 17/116 (14%)
Query: 35 KARFSGTWYAMAKKDPEGLFLQDNIV--AEFSVDETGQMSATAKGR--VRLLNNWDVCAD 90
SG W+++A + D I F V MSA L+ C
Sbjct: 12 LEELSGRWHSVALASNKS----DLIKPWGHFRVFIHS-MSAKDGNLHGDILIPQDGQCEK 66
Query: 91 MVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGT 146
+ T T KF ++YW G++D ++ + D +Y + Y N D +
Sbjct: 67 VSLTAFKTATSNKFDLEYW--------GHNDLYLAEVDPKSYLILYMINQYNDDTS 114
>3DTQ-A nrPDB
Length = 186
Score = 34.0 bits (76), Expect = 0.048, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGL----FLQDNIVAEFSVDETGQMSATAKGRV 79
+S +++NF +F G WY + + L Q + + E + TA
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYQVGRAGNAALREDKDPQKMTAQIYELKEDKSYNVTA---- 68
Query: 80 RLLNNWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYDTYAVQ 135
+ C TF P +F + Y G+ S+L + +V T+Y+ +A+
Sbjct: 69 -VRFRKKKCDYATMTFVPGSQPGEFTLGNIKSYPGLTSYLVR------VVSTNYNQHAMV 121
Query: 136 Y 136
+
Sbjct: 122 F 122
>3KFG-A nrPDB
Length = 162
Score = 33.6 bits (75), Expect = 0.058, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 25/112 (22%)
Query: 31 ENFDKARFSGTWYAMAKKDP-----EGLFLQDNIVAEFSVDETG---QMSATAKGRVRLL 82
+N + + +G W+++ E V V E + G
Sbjct: 8 QNLNVEKINGEWFSILLASDKREKIEEHGSMRVFVEHIHVLENSLAFKFHTVIDG----- 62
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAV 134
C+++ TE ++ + Y G + I+ TDYD Y +
Sbjct: 63 ----ECSEIFLVADKTEKAGEYSVMY--------DGFNTFTILKTDYDNYIM 102
>5MHH-A nrPDB
Length = 188
Score = 33.2 bits (74), Expect = 0.078, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLN 83
+S +++NF +F G WY + L + F+ + +L
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGFAGNAILREDKDPQKMFAT-IYELKEDKSYNVTSVLF 71
Query: 84 NWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
C + TF P +F + Y G+ S+L + +V T+Y+ +A+ +
Sbjct: 72 RKKKCDYWIRTFVPGSQPGEFTLGNIKSYPGLTSYLVR------VVSTNYNQHAMVF 122
>2E4J-A nrPDB
Length = 167
Score = 32.8 bits (73), Expect = 0.096, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 29 VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVC 88
V+ NF + +F G WY+ F + A + +T +T G L + +
Sbjct: 8 VQPNFQQDKFLGRWYSAGLASNSSWFREK--KAVLYMCKTVVAPSTEGGL--NLTSTFLR 63
Query: 89 ADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYS 137
+ T PA Y +S +V+ +YD YA+ +S
Sbjct: 64 KNQAETKIMVLQPAGAPGHY-TYSSPHSGSIHSVSVVEANYDEYALLFS 111
>5H9K-A nrPDB
Length = 156
Score = 32.4 bits (72), Expect = 0.13, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 51/150 (34%), Gaps = 31/150 (20%)
Query: 22 CRVSSFRVKENFDKARF-SGTWYAMAKKDPE------GLFLQDNIVAEFSVDETGQMSAT 74
C S ++ FD RF +G WY +D E N+ F G+
Sbjct: 10 CNALSGKIMSGFDANRFFTGDWYLTHSRDSEVPVRCEKYQTGSNLQLNF----NGK---- 61
Query: 75 AKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAV 134
G V+ + +F T Y V V+TDY YA+
Sbjct: 62 -NGDVKCSGSTVSGNQGFYSFQCTTTSGGSFTSYMAV-------------VETDYANYAL 107
Query: 135 QYSCRLLNLDGTCADSYSFVFSRDPNGLPP 164
Y C L T D++ +F+R +G P
Sbjct: 108 LYRCGLYG-STTPKDNF-LLFNRQSSGEIP 135
>1AVG-I nrPDB
Length = 142
Score = 31.3 bits (69), Expect = 0.28, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLN 142
N ++ D ++ ++ K +S + D + YD +A+ CR +
Sbjct: 59 NKFESNVKFQCNQVDNKNGEQYSFK--CKSSDNTEFEADFTFISVSYDNFALV--CRSIT 114
Query: 143 LDGTCADSYSFVFSRDPNGLPPEAQKI 169
+ VF R + P+A++I
Sbjct: 115 FTSQPKEDRYLVFERTKSDTDPDAKEI 141
>5N47-A nrPDB
Length = 188
Score = 30.5 bits (67), Expect = 0.44, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGL-FLQDNIVAEFSVDETGQMSATAKGRVRLL 82
+S +++NF +F G WY + + L +D ++ E + + VR
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGEAGNSLLREDKDPRKMYATIYELKEDKSYNVTSVRF- 71
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
C ++ TF P +F + + S + +V T+Y+ +A+ +
Sbjct: 72 -RSKKCHYLIRTFVPGSQPGEFTLGL--IKSKPGHTSFLVRVVSTNYNQHAMVF 122
>4MVK-A nrPDB
Length = 188
Score = 30.5 bits (67), Expect = 0.54, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGL------FLQDNIVAEFSVDETGQMSATAKG 77
+S +++NF +F G WY + + L + + E D++ +++ G
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGVAGNKSLREDKDPWKMYATIYELKEDKSYNVTSVGFG 72
Query: 78 RVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
+ C + TF P +F + + S + + +V T+Y+ +A+ +
Sbjct: 73 TKK-------CHYKIRTFVPGSQPGEFTLGR--IKSRPGRTSALVRVVSTNYNQHAMVF 122
>4MVL-A nrPDB
Length = 188
Score = 29.7 bits (65), Expect = 0.82, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 23/123 (18%)
Query: 24 VSSFRVKENFDKARFSGTWYAMA-------KKDPEGLFLQDNIVAEFSVDETGQMSATAK 76
+S +++NF +F G WY + ++D + L + I + + E + T+
Sbjct: 13 LSKVPLQQNFQDNQFHGKWYVVGAAGNVLLREDKDPLKMYATI---YELKEDKSYNVTSV 69
Query: 77 GRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWI---VDTDYDTYA 133
G C + TF P +F + + W+ V T+Y+ +A
Sbjct: 70 GFDD-----KKCLYKIRTFVPGSQPGEF-----TLGRIKSEPGGTSWLVRVVSTNYNQHA 119
Query: 134 VQY 136
+ +
Sbjct: 120 MVF 122
>4RUN-A nrPDB
Length = 161
Score = 29.7 bits (65), Expect = 0.92, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 33 FDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRL-----LNNWDV 87
++ +GTWY A + + + TA G L D
Sbjct: 5 LEEEDITGTWYVKAMVVDKDFPEDR------RPRKVSPVKVTALGGGNLEATFTFMREDR 58
Query: 88 CADMVGTFTDTEDPAKFKMKYWGVASFLQK--GNDDHWIVDTDYDTYAVQY 136
C TE+P KF +LQ+ G DD+ D ++Y
Sbjct: 59 CIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYSKDQRRGGLRY 109
>6NU3-AX nrPDB
Length = 398
Score = 28.2 bits (61), Expect = 2.7, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 20 RDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEF 63
RD SS+ K+ FD+ + TW K E Q + ++
Sbjct: 166 RDLLQSSYN-KQRFDQPLEASTWLKNFKTTNERFLNQIKVQEKY 208
>6IGZ-7 nrPDB
Length = 264
Score = 28.2 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 143 LDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLAR 181
LDG+ A Y + DP GL + + + RQ EL +R
Sbjct: 52 LDGSLAGDYGW----DPMGLSSDPKALAWYRQAELVHSR 86
>5NKN-A nrPDB
Length = 174
Score = 27.4 bits (59), Expect = 4.0, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 11/117 (9%)
Query: 24 VSSFRVKENFDKARFSGTWYAMAKKDPEGL-FLQDNIVAEFSVDETGQMSATAKGRVRLL 82
+S +++NF +F G WY + L +D I ++ E + +
Sbjct: 9 LSKVPLQQNFQDNQFHGKWYVVGVAGNGFLREDKDPIKMAATIYELKEDKSY--NVTFQK 66
Query: 83 NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWI---VDTDYDTYAVQY 136
C M T P +F + + + W+ V T+Y+ +A+ +
Sbjct: 67 FPMKKCQYMTDTLVPGSQPGEF-----TLGNIKSEPGYTSWLVRVVSTNYNQHAMVF 118
>6BQ5-A nrPDB
Length = 331
Score = 27.0 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 132 YAVQYSCRLLNLDGTCADSYSFVFSRD-PNGLPPEAQKIVRQRQEELCLARQYRLIVHNG 190
Y V YS + + AD + +V + D P L E I R RQ R+I N
Sbjct: 243 YVVPYSAHIP----SYADIWGWVLASDSPLDLSAEELDI-RMRQ---------RIIEENR 288
Query: 191 YCDGRS 196
Y DG++
Sbjct: 289 YLDGKT 294
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.314 0.127 0.369
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,003,427
Number of Sequences: 36641
Number of extensions: 305717
Number of successful extensions: 774
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 99
length of query: 201
length of database: 10,336,785
effective HSP length: 92
effective length of query: 109
effective length of database: 6,965,813
effective search space: 759273617
effective search space used: 759273617
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)