BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P01563 (188 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2LMS-A nrPDB 345 5e-96 3UX9-A nrPDB 280 3e-76 3OQ3-A nrPDB 231 2e-61 3SE4-B nrPDB 207 3e-54 1B5L-A nrPDB 160 3e-40 1AU1-A nrPDB 100 3e-22 3WCY-I nrPDB 69 8e-13 3PIW-A nrPDB 55 1e-08 3PIV-A nrPDB 46 8e-06 6EK5-A nrPDB 34 0.036 4IRB-A nrPDB 31 0.29 4BF9-A nrPDB 30 0.53 3JYU-A nrPDB 30 0.87 2NOB-A nrPDB 27 4.7 4A3P-A nrPDB 27 5.1 >2LMS-A nrPDB Length = 166 Score = 345 bits (886), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 24 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMI 83 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMI Sbjct: 2 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMI 61 Query: 84 QQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVR 143 QQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVR Sbjct: 62 QQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVR 121 Query: 144 KYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 188 KYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE Sbjct: 122 KYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 166 >3UX9-A nrPDB Length = 169 Score = 280 bits (716), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 138/169 (81%), Positives = 146/169 (86%), Gaps = 1/169 (0%) Query: 21 SVGCDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEF-GNQFQKAETIPVL 79 S CDLP+THSL +RRTLMLLAQM +IS SCL DRHDFGFPQEEF GNQFQKA I VL Sbjct: 1 SNACDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVL 60 Query: 80 HEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSI 139 HE+IQQIFNLF+TKDSSAAWDE LLDKF TELYQQLNDLEACV+Q V ETPLM DSI Sbjct: 61 HELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLEACVMQEERVGETPLMNADSI 120 Query: 140 LAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 188 LAV+KYF+RITLYL EKKYSPCAWEVVRAEIMRS SLSTNLQE LR KE Sbjct: 121 LAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTNLQERLRRKE 169 >3OQ3-A nrPDB Length = 166 Score = 231 bits (588), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 106/166 (63%), Positives = 134/166 (80%), Gaps = 1/166 (0%) Query: 24 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFG-NQFQKAETIPVLHEM 82 CDLPQTH+L ++R L LL +MR++S SCLKDR DFGFPQE+ G Q Q+A+ IPVL E+ Sbjct: 1 CDLPQTHNLRNKRALTLLVKMRRLSPLSCLKDRKDFGFPQEKVGAQQIQEAQAIPVLSEL 60 Query: 83 IQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAV 142 QQ+ N+F++KDSSAAW+ TLLD F E++QQLNDL+ACV+Q VGV E+PL +EDS+LAV Sbjct: 61 TQQVLNIFTSKDSSAAWNATLLDSFCNEVHQQLNDLKACVMQQVGVQESPLTQEDSLLAV 120 Query: 143 RKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 188 RKYF RIT+YL+EKK+SPCAWEVVRAE+ R+ S S NL L +E Sbjct: 121 RKYFHRITVYLREKKHSPCAWEVVRAEVWRALSSSVNLLARLSKEE 166 >3SE4-B nrPDB Length = 177 Score = 207 bits (526), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 104/168 (61%), Positives = 124/168 (73%), Gaps = 1/168 (0%) Query: 22 VGCDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEF-GNQFQKAETIPVLH 80 +GCDLPQ H L SR TL+LL QMR+IS F CLKDR DF FPQE G+Q QKA + VLH Sbjct: 4 LGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLH 63 Query: 81 EMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSIL 140 EM+QQIF+LF T+ SSAAW TLLD+ +T L+QQL LE C++Q VG E+ L Sbjct: 64 EMLQQIFSLFHTERSSAAWQMTLLDQLHTGLHQQLQHLETCLLQVVGEGESAGAISSPAL 123 Query: 141 AVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 188 +R+YFQ I +YLKEKKYS CAWEVVR EIM+S LSTN+QE LRSK+ Sbjct: 124 TLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTNMQERLRSKD 171 >1B5L-A nrPDB Length = 172 Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 83/162 (51%), Positives = 110/162 (67%), Gaps = 1/162 (0%) Query: 24 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEF-GNQFQKAETIPVLHEM 82 C L + L +R L LL +M ++S SCL+DR DFG PQE G+Q QK + PVL+EM Sbjct: 1 CYLSRKLMLDARENLKLLDRMNRLSPHSCLQDRKDFGLPQEMVEGDQLQKDQAFPVLYEM 60 Query: 83 IQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAV 142 +QQ FNLF T+ SSAAWD TLL++ T L QQL+ L+ C Q +G ++ L D I+ V Sbjct: 61 LQQSFNLFYTEHSSAAWDTTLLEQLCTGLQQQLDHLDTCRGQVMGEEDSELGNMDPIVTV 120 Query: 143 RKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESL 184 +KYFQ I YL+EK YS CAWE+VR E+MR+ ++ST LQ+ L Sbjct: 121 KKYFQGIYDYLQEKGYSDCAWEIVRVEMMRALTVSTTLQKRL 162 >1AU1-A nrPDB Length = 166 Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 15/143 (10%) Query: 52 CLKDRHDFGFPQE-EFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTE 110 CLKDR +F P+E + QFQK + ++EM+Q IF +F SS W+ET+++ Sbjct: 31 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 90 Query: 111 LYQQLNDLEACVIQGVGVTETPLMKED-------SILAVRKYFQRITLYLKEKKYSPCAW 163 +Y Q+N L+ V E L KED S L +++Y+ RI YLK K+YS CAW Sbjct: 91 VYHQINHLKT-------VLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAW 143 Query: 164 EVVRAEIMRSFSLSTNLQESLRS 186 +VR EI+R+F L LR+ Sbjct: 144 TIVRVEILRNFYFINRLTGYLRN 166 >3WCY-I nrPDB Length = 161 Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 56 RHDFGFPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQL 115 R DF P E + QK+ T + EM+Q +F +F SS W+ET++ + EL+QQ Sbjct: 33 RADFKIPME-MTEKMQKSYTAFAIQEMLQNVFLVFRNNFSSTGWNETIVVRLLDELHQQT 91 Query: 116 NDLEACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSF- 174 L+ + + T M + L ++ Y+ R+ YLK KY+ AW VVRAEI R+F Sbjct: 92 VFLKTVLEEKQEERLTWEMS-STALHLKSYYWRVQRYLKLMKYNSYAWMVVRAEIFRNFL 150 Query: 175 ---SLSTNLQ 181 L+ N Q Sbjct: 151 IIRRLTRNFQ 160 >3PIW-A nrPDB Length = 161 Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 8/140 (5%) Query: 40 LLAQMRKISLFSCLKDRHDFGFPQEEF--GNQFQKAETIPVLHEMIQQIFNLFSTKDSSA 97 LL M I CLK+ FP+ N QK +++++ I LF+ Sbjct: 19 LLESMGGIFPRECLKENVRITFPKYALQSNNSNQKTGVAKAVYKIMDHIDVLFANDSYPE 78 Query: 98 AWDETLLDKFYTELYQQLNDLEACVIQ--GVGVTETPLMKEDSILAVRKYFQRITLYLKE 155 AW++ +D F +Y+ L C+++ G + ++D A++ YF ++ L+ Sbjct: 79 AWNKRKVDNFQNIVYR-LTKENKCIMRMRAQGTVDDFPARDD---ALKSYFNKLATLLRN 134 Query: 156 KKYSPCAWEVVRAEIMRSFS 175 K S CAWEVVR E++ S Sbjct: 135 KDNSFCAWEVVRHELLGVLS 154 >3PIV-A nrPDB Length = 164 Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 59/109 (54%), Gaps = 10/109 (9%) Query: 83 IQQIFNLFSTKD--SSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSIL 140 + I +L ++ +S WD+ ++ F L+++ +DL+ CV + P KE + Sbjct: 59 LDHIIHLMDAREHMNSVNWDQNTVEDFLNILHRKSSDLKECVARYA----KPAHKESYEI 114 Query: 141 AVRKYFQRITLYLKEKKYSPCAWE----VVRAEIMRSFSLSTNLQESLR 185 ++++F+ + LK+K+YS AWE VV++ + R +++N + + R Sbjct: 115 RIKRHFRTLKKILKKKQYSAEAWEQIRRVVKSHLQRMDIIASNARVNPR 163 >6EK5-A nrPDB Length = 205 Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 22/78 (28%) Query: 49 LFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFY 108 +F L+DR +G ++FG QIFN+F + S+A L D+F Sbjct: 90 IFYLLRDRRPYGNAPQDFG-----------------QIFNMFDNEPSTATIKNDLRDRF- 131 Query: 109 TELYQQLNDLEACVIQGV 126 Q L A V+ G+ Sbjct: 132 ----QVLRKFHATVVGGL 145 >4IRB-A nrPDB Length = 236 Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 16/100 (16%) Query: 97 AAW---DET--LLDKFYTELYQQLNDLEACVI-------QGVGVT-ETPLMKEDSILAVR 143 A+W DET + DKF+ +L Q L + CV G GV E+P + SI + Sbjct: 54 ASWLLRDETSPIPDKFFIQLKQPLRNKRVCVCGIDPYPKDGTGVPFESPNFTKKSIKEIA 113 Query: 144 KYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQES 183 R+T + K Y+ ++ I ++ LS L E+ Sbjct: 114 SSISRLTGVIDYKGYN---LNIIDGVIPWNYYLSCKLGET 150 >4BF9-A nrPDB Length = 338 Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Query: 101 ETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSP 160 E +LD EL ++ND + C+ + V V D +L V K F RI L+ +P Sbjct: 32 EGVLDSLVRELLTEVNDYDLCITEFVRVV-------DQLLPV-KVFHRICPELQNASRTP 83 Query: 161 CAWEVVRAEIMRSF 174 +VR +++ F Sbjct: 84 SG-TLVRVQLLGQF 96 >3JYU-A nrPDB Length = 231 Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 69 QFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGV 128 F KA+TI + + ++++FN+ + +++ L +K+ + Y+QL+ L+ IQ G+ Sbjct: 157 HFSKADTIATIEKEMRKLFNIPAERETR------LWNKYMSNTYEQLSKLDN-TIQDAGL 209 >2NOB-A nrPDB Length = 325 Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 93 KDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQ 147 + S A W L D+ +T L Q L V +G ++ D + AVRKYFQ Sbjct: 47 EQSPAHWSGVLADQVWT-LTQTEEQLHCTVYRG-DKSQASRPTPDELEAVRKYFQ 99 >4A3P-A nrPDB Length = 217 Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 7/60 (11%) Query: 69 QFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGV 128 +F KA+TI + + I++IF++ K++ L +K+ + ++ LN ++ IQ G+ Sbjct: 145 RFSKADTIDTIEKEIRKIFSIPDEKETR------LWNKYMSNTFEPLNKPDST-IQDAGL 197 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2LMS-A nrPDB 252 7e-68 3UX9-A nrPDB 246 3e-66 3SE4-B nrPDB 233 3e-62 3OQ3-A nrPDB 227 2e-60 1B5L-A nrPDB 220 3e-58 1AU1-A nrPDB 161 1e-40 3PIW-A nrPDB 160 4e-40 3WCY-I nrPDB 142 1e-34 3PIV-A nrPDB 112 1e-25 Sequences not found previously or not previously below threshold: 5LJ5-S nrPDB 32 0.18 1L1L-A nrPDB 28 2.2 2XIG-A nrPDB 28 2.6 4Y66-B nrPDB 28 3.2 5FTT-C nrPDB 28 3.3 5T5W-C nrPDB 27 3.5 5NL1-A nrPDB 27 5.8 1SJ8-A nrPDB 27 5.8 1SJ7-A nrPDB 27 5.8 3OOQ-A nrPDB 27 5.8 CONVERGED! >2LMS-A nrPDB Length = 166 Score = 252 bits (643), Expect = 7e-68, Method: Composition-based stats. Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 24 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMI 83 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMI Sbjct: 2 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMI 61 Query: 84 QQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVR 143 QQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVR Sbjct: 62 QQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVR 121 Query: 144 KYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 188 KYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE Sbjct: 122 KYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 166 >3UX9-A nrPDB Length = 169 Score = 246 bits (629), Expect = 3e-66, Method: Composition-based stats. Identities = 138/169 (81%), Positives = 146/169 (86%), Gaps = 1/169 (0%) Query: 21 SVGCDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEF-GNQFQKAETIPVL 79 S CDLP+THSL +RRTLMLLAQM +IS SCL DRHDFGFPQEEF GNQFQKA I VL Sbjct: 1 SNACDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVL 60 Query: 80 HEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSI 139 HE+IQQIFNLF+TKDSSAAWDE LLDKF TELYQQLNDLEACV+Q V ETPLM DSI Sbjct: 61 HELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLEACVMQEERVGETPLMNADSI 120 Query: 140 LAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 188 LAV+KYF+RITLYL EKKYSPCAWEVVRAEIMRS SLSTNLQE LR KE Sbjct: 121 LAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTNLQERLRRKE 169 >3SE4-B nrPDB Length = 177 Score = 233 bits (595), Expect = 3e-62, Method: Composition-based stats. Identities = 104/168 (61%), Positives = 124/168 (73%), Gaps = 1/168 (0%) Query: 22 VGCDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEF-GNQFQKAETIPVLH 80 +GCDLPQ H L SR TL+LL QMR+IS F CLKDR DF FPQE G+Q QKA + VLH Sbjct: 4 LGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLH 63 Query: 81 EMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSIL 140 EM+QQIF+LF T+ SSAAW TLLD+ +T L+QQL LE C++Q VG E+ L Sbjct: 64 EMLQQIFSLFHTERSSAAWQMTLLDQLHTGLHQQLQHLETCLLQVVGEGESAGAISSPAL 123 Query: 141 AVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 188 +R+YFQ I +YLKEKKYS CAWEVVR EIM+S LSTN+QE LRSK+ Sbjct: 124 TLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTNMQERLRSKD 171 >3OQ3-A nrPDB Length = 166 Score = 227 bits (579), Expect = 2e-60, Method: Composition-based stats. Identities = 106/166 (63%), Positives = 134/166 (80%), Gaps = 1/166 (0%) Query: 24 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFG-NQFQKAETIPVLHEM 82 CDLPQTH+L ++R L LL +MR++S SCLKDR DFGFPQE+ G Q Q+A+ IPVL E+ Sbjct: 1 CDLPQTHNLRNKRALTLLVKMRRLSPLSCLKDRKDFGFPQEKVGAQQIQEAQAIPVLSEL 60 Query: 83 IQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAV 142 QQ+ N+F++KDSSAAW+ TLLD F E++QQLNDL+ACV+Q VGV E+PL +EDS+LAV Sbjct: 61 TQQVLNIFTSKDSSAAWNATLLDSFCNEVHQQLNDLKACVMQQVGVQESPLTQEDSLLAV 120 Query: 143 RKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRSKE 188 RKYF RIT+YL+EKK+SPCAWEVVRAE+ R+ S S NL L +E Sbjct: 121 RKYFHRITVYLREKKHSPCAWEVVRAEVWRALSSSVNLLARLSKEE 166 >1B5L-A nrPDB Length = 172 Score = 220 bits (561), Expect = 3e-58, Method: Composition-based stats. Identities = 83/164 (50%), Positives = 110/164 (67%), Gaps = 1/164 (0%) Query: 24 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEF-GNQFQKAETIPVLHEM 82 C L + L +R L LL +M ++S SCL+DR DFG PQE G+Q QK + PVL+EM Sbjct: 1 CYLSRKLMLDARENLKLLDRMNRLSPHSCLQDRKDFGLPQEMVEGDQLQKDQAFPVLYEM 60 Query: 83 IQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAV 142 +QQ FNLF T+ SSAAWD TLL++ T L QQL+ L+ C Q +G ++ L D I+ V Sbjct: 61 LQQSFNLFYTEHSSAAWDTTLLEQLCTGLQQQLDHLDTCRGQVMGEEDSELGNMDPIVTV 120 Query: 143 RKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQESLRS 186 +KYFQ I YL+EK YS CAWE+VR E+MR+ ++ST LQ+ L Sbjct: 121 KKYFQGIYDYLQEKGYSDCAWEIVRVEMMRALTVSTTLQKRLTK 164 >1AU1-A nrPDB Length = 166 Score = 161 bits (408), Expect = 1e-40, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 52 CLKDRHDFGFPQE-EFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTE 110 CLKDR +F P+E + QFQK + ++EM+Q IF +F SS W+ET+++ Sbjct: 31 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 90 Query: 111 LYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEI 170 +Y Q+N L+ + + + + K S L +++Y+ RI YLK K+YS CAW +VR EI Sbjct: 91 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 150 Query: 171 MRSFSLSTNLQESLRS 186 +R+F L LR+ Sbjct: 151 LRNFYFINRLTGYLRN 166 >3PIW-A nrPDB Length = 161 Score = 160 bits (404), Expect = 4e-40, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%) Query: 24 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEF--GNQFQKAETIPVLHE 81 C + + H + LL M I CLK+ FP+ N QK +++ Sbjct: 6 CIMRRKHV---KTAYSLLESMGGIFPRECLKENVRITFPKYALQSNNSNQKTGVAKAVYK 62 Query: 82 MIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACV--IQGVGVTETPLMKEDSI 139 ++ I LF+ AW++ +D F +Y+ L C+ ++ G + ++D Sbjct: 63 IMDHIDVLFANDSYPEAWNKRKVDNFQNIVYR-LTKENKCIMRMRAQGTVDDFPARDD-- 119 Query: 140 LAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFS 175 A++ YF ++ L+ K S CAWEVVR E++ S Sbjct: 120 -ALKSYFNKLATLLRNKDNSFCAWEVVRHELLGVLS 154 >3WCY-I nrPDB Length = 161 Score = 142 bits (357), Expect = 1e-34, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 5/152 (3%) Query: 35 RRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKD 94 R+ LL Q+ L R DF P E + QK+ T + EM+Q +F +F Sbjct: 15 RKCQELLEQLNG---KINLTYRADFKIPME-MTEKMQKSYTAFAIQEMLQNVFLVFRNNF 70 Query: 95 SSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLK 154 SS W+ET++ + EL+QQ L+ + + T M + L ++ Y+ R+ YLK Sbjct: 71 SSTGWNETIVVRLLDELHQQTVFLKTVLEEKQEERLTWEMS-STALHLKSYYWRVQRYLK 129 Query: 155 EKKYSPCAWEVVRAEIMRSFSLSTNLQESLRS 186 KY+ AW VVRAEI R+F + L + ++ Sbjct: 130 LMKYNSYAWMVVRAEIFRNFLIIRRLTRNFQN 161 >3PIV-A nrPDB Length = 164 Score = 112 bits (279), Expect = 1e-25, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 18/170 (10%) Query: 24 CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQ--EEFGNQFQKAETIPVLHE 81 C+ + + + +L LL M + FP ++ + + + L Sbjct: 4 CEWLGRYRIITTESLNLLKNMGGKYA------DLETPFPSRLYTLMDKSKVEDQVKFLVL 57 Query: 82 MIQQIFNLFSTKD--SSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSI 139 + I +L ++ +S WD+ ++ F L+++ +DL+ CV + P KE Sbjct: 58 TLDHIIHLMDAREHMNSVNWDQNTVEDFLNILHRKSSDLKECVARYA----KPAHKESYE 113 Query: 140 LAVRKYFQRITLYLKEKKYSPCAWE----VVRAEIMRSFSLSTNLQESLR 185 + ++++F+ + LK+K+YS AWE VV++ + R +++N + + R Sbjct: 114 IRIKRHFRTLKKILKKKQYSAEAWEQIRRVVKSHLQRMDIIASNARVNPR 163 >5LJ5-S nrPDB Length = 687 Score = 31.7 bits (70), Expect = 0.18, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 7/128 (5%) Query: 35 RRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMIQQIFNLFS--- 91 L ++R I + L + DF +E QK T + ++ L+ Sbjct: 481 EENLGDWDRVRGIYTIA-LDENSDF-LTKEAKIVLLQKYITFETESQEFEKARKLYRRYL 538 Query: 92 --TKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRI 149 + S +W E + + T QQL DL + V + +++ L RK F+ Sbjct: 539 ELNQYSPQSWIEFAMYQTSTPTEQQLLDLAKLQSENVDEDIEFEITDENKLEARKVFEEA 598 Query: 150 TLYLKEKK 157 ++ KEK Sbjct: 599 IVFFKEKD 606 >1L1L-A nrPDB Length = 739 Score = 28.2 bits (61), Expect = 2.2, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 132 PLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQE 182 PL+ E+ +++ F Y K +SP WE+ R I ++ + ++ Sbjct: 426 PLIAEEQGWDLQEVFALAARYAKRVTFSPYDWEISREIIQKNRRIGISMSG 476 >2XIG-A nrPDB Length = 150 Score = 27.8 bits (60), Expect = 2.6, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 16/111 (14%) Query: 44 MRKISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMIQQ-----IFNLFSTKDSSAA 98 M+++ + +R + N Q+ E + VL+ I + KD + + Sbjct: 1 MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTS 60 Query: 99 WDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRI 149 + +Y+ LN LE + V ET +A +++ I Sbjct: 61 ---------ISSVYRILNFLEK--ENFISVLETSKSGRRYEIAAKEHHDHI 100 >4Y66-B nrPDB Length = 231 Score = 27.8 bits (60), Expect = 3.2, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 67 GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAA---WDETLLDKFYT----ELYQQLNDLE 119 G+++ K L E++ Q +++ + W++ LL+ E+ Q+NDL+ Sbjct: 33 GSKYGKTTVQKALDELVAQNLCIYTEIGKTGKLYLWNQNLLEVLSDAQLMEVNAQINDLK 92 Query: 120 ACVIQGVGVTET 131 A V + ET Sbjct: 93 AQVEKLTQQGET 104 >5FTT-C nrPDB Length = 383 Score = 27.8 bits (60), Expect = 3.3, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 24 CDLPQTHSLGSRR----TLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQF-QKAETIPV 78 C LP + + S+R T + + C E + QK P Sbjct: 57 CYLPDAYKIMSQRCNNRTQCAVVAGPDVFPDPCPGTYKYLEVQYECVPYKVEQKVFLCPG 116 Query: 79 LHEMIQQIFNLFSTKDSSAAW 99 L + + Q +LF + S AW Sbjct: 117 LLKGVYQSEHLFESDHQSGAW 137 >5T5W-C nrPDB Length = 176 Score = 27.4 bits (59), Expect = 3.5, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 50/160 (31%), Gaps = 11/160 (6%) Query: 23 GCDLPQTHSLGSRRTLMLLAQMRKISLFSCLKD---RHDFGFPQEEFGNQFQKAETIPVL 79 GC + Q SL R + LKD R FP+ Q Q E L Sbjct: 5 GCHIAQFKSLSPRELQAFKRAKDALEESLLLKDCKCRSRL-FPRTWDLRQLQVRERPVAL 63 Query: 80 HEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSI 139 + + + +LD+ L+ L+ L AC+ P + Sbjct: 64 EAELALTLKVLDATADTDPALGDVLDQPLHTLHHILSQLRACI------QPQPTAGPRTR 117 Query: 140 LAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179 + ++ R+ K K+ C V + R + N Sbjct: 118 GRLHRWLHRLQEAPK-KESPGCLEASVTFNLFRLLARDLN 156 >5NL1-A nrPDB Length = 156 Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 66 FGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQG 125 + Q + + + + L +S AW + +D+ E++ Q++ + A Sbjct: 20 INSSMQAVQAAQATLDDFETLPPL-GQDAASKAWRKNKMDESKHEIHSQVDAITAGTASV 78 Query: 126 VGVTETPLMKEDS 138 V +T + D Sbjct: 79 VNLTAGDPAETDY 91 >1SJ8-A nrPDB Length = 308 Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 66 FGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQG 125 + Q + + + + L +S AW + +D+ E++ Q++ + A Sbjct: 18 INSSMQAVQAAQATLDDFETLPPL-GQDAASKAWRKNKMDESKHEIHSQVDAITAGTASV 76 Query: 126 VGVTETPLMKEDS 138 V +T + D Sbjct: 77 VNLTAGDPAETDY 89 >1SJ7-A nrPDB Length = 174 Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 66 FGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQG 125 + Q + + + + L +S AW + +D+ E++ Q++ + A Sbjct: 18 INSSMQAVQAAQATLDDFETLPPL-GQDAASKAWRKNKMDESKHEIHSQVDAITAGTASV 76 Query: 126 VGVTETPLMKEDS 138 V +T + D Sbjct: 77 VNLTAGDPAETDY 89 >3OOQ-A nrPDB Length = 396 Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 17/33 (51%) Query: 125 GVGVTETPLMKEDSILAVRKYFQRITLYLKEKK 157 +TP + + +R YF ++ Y+K+K+ Sbjct: 162 YGERKQTPSTRMGTAGVIRDYFTKVKNYMKKKE 194 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.127 0.337 Lambda K H 0.267 0.0390 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,144,673 Number of Sequences: 36641 Number of extensions: 205512 Number of successful extensions: 649 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 604 Number of HSP's gapped (non-prelim): 40 length of query: 188 length of database: 10,336,785 effective HSP length: 91 effective length of query: 97 effective length of database: 7,002,454 effective search space: 679238038 effective search space used: 679238038 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 56 (26.3 bits)