BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P01556 (124 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6HSV-A nrPDB 219 2e-58 1XTC-D nrPDB 214 9e-57 3EFX-D nrPDB 205 5e-54 1B44-D nrPDB 189 2e-49 1LTR-D nrPDB 189 2e-49 2WV6-D nrPDB 167 1e-42 4L63-B nrPDB 163 2e-41 3GBE-A nrPDB 31 0.15 2E2P-A nrPDB 29 0.39 4HOX-A nrPDB 27 1.7 1IJL-A nrPDB 27 2.7 1PP2-R nrPDB 27 2.8 2IGT-A nrPDB 26 3.6 3TEX-A nrPDB 26 4.8 3HVD-A nrPDB 26 5.5 6D6Q-G nrPDB 25 5.8 >6HSV-A nrPDB Length = 124 Score = 219 bits (559), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 22 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS 81 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS Sbjct: 1 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS 60 Query: 82 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN Sbjct: 61 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 103 >1XTC-D nrPDB Length = 103 Score = 214 bits (544), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 101/103 (98%), Positives = 101/103 (98%) Query: 22 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS 81 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVP SQHIDS Sbjct: 1 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPSSQHIDS 60 Query: 82 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 QKKAIERMKDTLRIAYLTEAKVEKLC WNNKTPHAIAAISMAN Sbjct: 61 QKKAIERMKDTLRIAYLTEAKVEKLCTWNNKTPHAIAAISMAN 103 >3EFX-D nrPDB Length = 103 Score = 205 bits (521), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 95/102 (93%), Positives = 100/102 (98%) Query: 23 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQ 82 PQNIT+LC+EYHNTQIYT+NDKI SYTESLAGKREMAIITFKNGA FQVEVPGSQHIDSQ Sbjct: 2 PQNITELCSEYHNTQIYTINDKILSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQ 61 Query: 83 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTP++IAAISMAN Sbjct: 62 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPNSIAAISMAN 103 >1B44-D nrPDB Length = 129 Score = 189 bits (481), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 85/100 (85%), Positives = 95/100 (95%) Query: 23 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQ 82 PQ+IT+LC+EYHNTQIYT+NDKI SYTES+AGKREM IITFK+GA FQVEVPGSQHIDSQ Sbjct: 2 PQSITELCSEYHNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDSQ 61 Query: 83 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISM 122 KKAIERMKDTLRI YLTE K++KLCVWNNKTP++IAAISM Sbjct: 62 KKAIERMKDTLRITYLTETKIDKLCVWNNKTPNSIAAISM 101 >1LTR-D nrPDB Length = 113 Score = 189 bits (481), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 85/100 (85%), Positives = 95/100 (95%) Query: 23 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQ 82 PQ+IT+LC+EYHNTQIYT+NDKI SYTES+AGKREM IITFK+GA FQVEVPGSQHIDSQ Sbjct: 2 PQSITELCSEYHNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDSQ 61 Query: 83 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISM 122 KKAIERMKDTLRI YLTE K++KLCVWNNKTP++IAAISM Sbjct: 62 KKAIERMKDTLRITYLTETKIDKLCVWNNKTPNSIAAISM 101 >2WV6-D nrPDB Length = 103 Score = 167 bits (422), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 75/102 (73%), Positives = 88/102 (86%) Query: 23 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQ 82 PQNIT+LC+EYHNTQIY LN +I +YTESLAG REM II+F NGA FQVEVPGSQH++SQ Sbjct: 2 PQNITELCSEYHNTQIYELNKEIKTYTESLAGYREMVIISFANGATFQVEVPGSQHLESQ 61 Query: 83 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 K+ +ERMKDTLR AY T KV KLCVWNNKTP++IAAI ++N Sbjct: 62 KRPLERMKDTLRAAYFTGIKVSKLCVWNNKTPNSIAAIELSN 103 >4L63-B nrPDB Length = 112 Score = 163 bits (412), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 72/103 (69%), Positives = 86/103 (83%) Query: 22 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS 81 TPQNITDLC EY NT IY+LN +I +YTESLAGKREM II+F NGA FQVEVPGSQH++S Sbjct: 2 TPQNITDLCNEYQNTMIYSLNKEIATYTESLAGKREMVIISFSNGATFQVEVPGSQHLES 61 Query: 82 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 QK+ +ERMKDTLR AY T K+ KLC W NK+P++IAAI ++N Sbjct: 62 QKRPLERMKDTLRAAYFTGIKISKLCAWTNKSPNSIAAIELSN 104 >3GBE-A nrPDB Length = 558 Score = 30.8 bits (68), Expect = 0.15, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 36 TQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQH-----IDSQKKAIERMK 90 T + ND +++YT SL ++ + ++ FK + + ++P + IDS K + + Sbjct: 482 TDLDPANDSVYAYTRSLGAEKYLVVVNFKE-QMMRYKLPDNLSIEKVIIDSNSKNVVKKN 540 Query: 91 DTL 93 D+L Sbjct: 541 DSL 543 >2E2P-A nrPDB Length = 299 Score = 29.3 bits (64), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%) Query: 74 PGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCV--------WNNKTPHA 116 PG+ H +AIE +K+ ++IA EA V + V W N TP A Sbjct: 33 PGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGLDSKFDWENFTPLA 83 >4HOX-A nrPDB Length = 559 Score = 27.3 bits (59), Expect = 1.7, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 42 NDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHID 80 N+ +++YT +L ++ + +I FK + +PG I+ Sbjct: 489 NNSVYAYTRTLGAEKYLVVINFKE-EVMHYTLPGDLSIN 526 >1IJL-A nrPDB Length = 123 Score = 26.6 bits (57), Expect = 2.7, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Query: 19 AHGTPQNITDLCAEYHNT---QIYTLNDKIFSYTES 51 HG PQ+ TD C H+ ++ + K+ SYT S Sbjct: 32 GHGRPQDATDRCCFVHDCCYGKVTGCDPKMDSYTYS 67 >1PP2-R nrPDB Length = 122 Score = 26.6 bits (57), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 10/50 (20%) Query: 12 VLLSSAYA-------HGTPQNITDLCAEYHNT---QIYTLNDKIFSYTES 51 +L SAY HG PQ+ TD C H+ + N K SYT S Sbjct: 18 LLWYSAYGCYCGWGGHGLPQDATDRCCFVHDCCYGKATDCNPKTVSYTYS 67 >2IGT-A nrPDB Length = 332 Score = 26.2 bits (56), Expect = 3.6, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 78 HIDSQKKAIERMKDTLRIAYLTEAKVEKLC 107 H+D+ KKAI K+ +A L +A + +C Sbjct: 180 HVDASKKAIGWAKENQVLAGLEQAPIRWIC 209 >3TEX-A nrPDB Length = 715 Score = 25.8 bits (55), Expect = 4.8, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 17/28 (60%) Query: 18 YAHGTPQNITDLCAEYHNTQIYTLNDKI 45 + T QNI + AE + T IYT+ DKI Sbjct: 534 FDQQTSQNIKNQLAELNATNIYTVLDKI 561 >3HVD-A nrPDB Length = 548 Score = 25.8 bits (55), Expect = 5.5, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 17/28 (60%) Query: 18 YAHGTPQNITDLCAEYHNTQIYTLNDKI 45 + T QNI + AE + T IYT+ DKI Sbjct: 367 FDQQTSQNIKNQLAELNATNIYTVLDKI 394 >6D6Q-G nrPDB Length = 277 Score = 25.4 bits (54), Expect = 5.8, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 54 GKREMAIITFKNGAIFQVEVPGSQ 77 G + I+T K+G IF+V+V GS+ Sbjct: 116 GDHVIGIVTAKSGDIFKVDVGGSE 139 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6HSV-A nrPDB 193 1e-50 3EFX-D nrPDB 189 3e-49 1XTC-D nrPDB 188 4e-49 2WV6-D nrPDB 186 3e-48 1LTR-D nrPDB 183 2e-47 4L63-B nrPDB 181 5e-47 1B44-D nrPDB 181 6e-47 Sequences not found previously or not previously below threshold: 3GBE-A nrPDB 28 0.75 5KYM-A nrPDB 28 1.1 5ELO-A nrPDB 26 3.4 4XZ5-A nrPDB 26 3.8 5DJ3-A nrPDB 26 5.0 1WBA-A nrPDB 26 5.5 2JW1-A nrPDB 25 5.6 2H4C-A nrPDB 25 5.6 5OGZ-A nrPDB 25 5.7 1T1V-A nrPDB 25 5.8 4HOX-A nrPDB 25 6.0 1PJB-A nrPDB 25 6.0 2E2P-A nrPDB 25 6.2 4ML9-A nrPDB 25 6.3 1PP2-R nrPDB 25 7.0 3ILX-A nrPDB 25 9.0 2X2N-A nrPDB 25 9.0 6D6Q-G nrPDB 25 9.1 CONVERGED! >6HSV-A nrPDB Length = 124 Score = 193 bits (491), Expect = 1e-50, Method: Composition-based stats. Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 22 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS 81 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS Sbjct: 1 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS 60 Query: 82 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN Sbjct: 61 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 103 >3EFX-D nrPDB Length = 103 Score = 189 bits (480), Expect = 3e-49, Method: Composition-based stats. Identities = 95/102 (93%), Positives = 100/102 (98%) Query: 23 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQ 82 PQNIT+LC+EYHNTQIYT+NDKI SYTESLAGKREMAIITFKNGA FQVEVPGSQHIDSQ Sbjct: 2 PQNITELCSEYHNTQIYTINDKILSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQ 61 Query: 83 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTP++IAAISMAN Sbjct: 62 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPNSIAAISMAN 103 >1XTC-D nrPDB Length = 103 Score = 188 bits (478), Expect = 4e-49, Method: Composition-based stats. Identities = 101/103 (98%), Positives = 101/103 (98%) Query: 22 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS 81 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVP SQHIDS Sbjct: 1 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPSSQHIDS 60 Query: 82 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 QKKAIERMKDTLRIAYLTEAKVEKLC WNNKTPHAIAAISMAN Sbjct: 61 QKKAIERMKDTLRIAYLTEAKVEKLCTWNNKTPHAIAAISMAN 103 >2WV6-D nrPDB Length = 103 Score = 186 bits (471), Expect = 3e-48, Method: Composition-based stats. Identities = 75/102 (73%), Positives = 88/102 (86%) Query: 23 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQ 82 PQNIT+LC+EYHNTQIY LN +I +YTESLAG REM II+F NGA FQVEVPGSQH++SQ Sbjct: 2 PQNITELCSEYHNTQIYELNKEIKTYTESLAGYREMVIISFANGATFQVEVPGSQHLESQ 61 Query: 83 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 K+ +ERMKDTLR AY T KV KLCVWNNKTP++IAAI ++N Sbjct: 62 KRPLERMKDTLRAAYFTGIKVSKLCVWNNKTPNSIAAIELSN 103 >1LTR-D nrPDB Length = 113 Score = 183 bits (464), Expect = 2e-47, Method: Composition-based stats. Identities = 85/100 (85%), Positives = 95/100 (95%) Query: 23 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQ 82 PQ+IT+LC+EYHNTQIYT+NDKI SYTES+AGKREM IITFK+GA FQVEVPGSQHIDSQ Sbjct: 2 PQSITELCSEYHNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDSQ 61 Query: 83 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISM 122 KKAIERMKDTLRI YLTE K++KLCVWNNKTP++IAAISM Sbjct: 62 KKAIERMKDTLRITYLTETKIDKLCVWNNKTPNSIAAISM 101 >4L63-B nrPDB Length = 112 Score = 181 bits (460), Expect = 5e-47, Method: Composition-based stats. Identities = 72/103 (69%), Positives = 86/103 (83%) Query: 22 TPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDS 81 TPQNITDLC EY NT IY+LN +I +YTESLAGKREM II+F NGA FQVEVPGSQH++S Sbjct: 2 TPQNITDLCNEYQNTMIYSLNKEIATYTESLAGKREMVIISFSNGATFQVEVPGSQHLES 61 Query: 82 QKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN 124 QK+ +ERMKDTLR AY T K+ KLC W NK+P++IAAI ++N Sbjct: 62 QKRPLERMKDTLRAAYFTGIKISKLCAWTNKSPNSIAAIELSN 104 >1B44-D nrPDB Length = 129 Score = 181 bits (460), Expect = 6e-47, Method: Composition-based stats. Identities = 85/100 (85%), Positives = 95/100 (95%) Query: 23 PQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQ 82 PQ+IT+LC+EYHNTQIYT+NDKI SYTES+AGKREM IITFK+GA FQVEVPGSQHIDSQ Sbjct: 2 PQSITELCSEYHNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDSQ 61 Query: 83 KKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISM 122 KKAIERMKDTLRI YLTE K++KLCVWNNKTP++IAAISM Sbjct: 62 KKAIERMKDTLRITYLTETKIDKLCVWNNKTPNSIAAISM 101 >3GBE-A nrPDB Length = 558 Score = 28.5 bits (62), Expect = 0.75, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 42 NDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQH-----IDSQKKAIERMKDTL 93 ND +++YT SL ++ + ++ FK + + ++P + IDS K + + D+L Sbjct: 488 NDSVYAYTRSLGAEKYLVVVNFKE-QMMRYKLPDNLSIEKVIIDSNSKNVVKKNDSL 543 >5KYM-A nrPDB Length = 247 Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 59 AIITFKNGAIFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVW 109 AI KNG F V G++ D K + KD+L IA T V + +W Sbjct: 141 AIEKLKNGVTFIVFPEGTRSPDG--KVLSFKKDSLMIAVKTGVPVLPVSIW 189 >5ELO-A nrPDB Length = 535 Score = 26.2 bits (56), Expect = 3.4, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 70 QVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVE 104 Q + PGS + D++ K +E +KD R Y + K+ Sbjct: 15 QTQGPGSHYTDNRYKMMECIKDAGRPFYPHKFKIS 49 >4XZ5-A nrPDB Length = 233 Score = 26.2 bits (56), Expect = 3.8, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 10/67 (14%) Query: 23 PQNITDLCAEY------HNTQIYTLNDKIFSYTESLAG----KREMAIITFKNGAIFQVE 72 PQ +L E+ N L + T SL G RE A+ NG QV Sbjct: 12 PQYWGELAPEFSTCKTGKNQSPINLKPQTAVGTTSLPGFDVYYRETALKLINNGHTLQVN 71 Query: 73 VPGSQHI 79 +P +I Sbjct: 72 IPLGSYI 78 >5DJ3-A nrPDB Length = 376 Score = 25.8 bits (55), Expect = 5.0, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 12/66 (18%) Query: 43 DKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHI---------DSQKKAIERMKDTL 93 + + E LA E+ I +G Q PG Q I +S+++ +++++ Sbjct: 8 KENLTQWEYLALNSELNI---ADGHARQALSPGQQKIVNELPVLWAESEQRPVQQIESEA 64 Query: 94 RIAYLT 99 AY T Sbjct: 65 HQAYFT 70 >1WBA-A nrPDB Length = 175 Score = 25.8 bits (55), Expect = 5.5, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%) Query: 52 LAGKREMAIITFKNGAIFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNN 111 L + + I++F +GA V G+++ + + +K T I Y T E + Sbjct: 13 LVNRGKYTIVSFSDGAGIDVVATGNENPED---PLSIVKSTRNIMYATSISSE------D 63 Query: 112 KTP 114 KTP Sbjct: 64 KTP 66 >2JW1-A nrPDB Length = 115 Score = 25.4 bits (54), Expect = 5.6, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 40 TLNDKIFSYTESLAGKREMAIITFKNG---AIFQVEVPGSQHIDSQKKAIERMKDTLR 94 T N I Y++ ++GK A+ +F G F V+ +D+QK AI+++ L+ Sbjct: 31 TTNKSINVYSKCISGK---AVYSFNAGKFMGNFNVKEVDGCFMDAQKIAIDKLFSMLK 85 >2H4C-A nrPDB Length = 122 Score = 25.4 bits (54), Expect = 5.6, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Query: 19 AHGTPQNITDLCAEYHNTQIYTLND---KIFSYTESL 52 G PQ+ TD C H+ T+ND K+ +Y+ S Sbjct: 32 GQGKPQDATDRCCFVHDCCYGTVNDCNPKMATYSYSF 68 >5OGZ-A nrPDB Length = 456 Score = 25.4 bits (54), Expect = 5.7, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 60 IITFKNGAIFQVEVPGSQHIDSQKKAIERMKDTLRIAY 97 I+ +NGA F+ E+ + I+ K+ I+ +KD L A+ Sbjct: 351 IVISENGAAFKDEIGSNGKIEDTKR-IQYLKDYLTQAH 387 >1T1V-A nrPDB Length = 93 Score = 25.4 bits (54), Expect = 5.8, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 68 IFQVEVPGSQHIDSQKKAIERMKDTLRIAY 97 ++ V GS+ I SQ+ + R+ D RI Y Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQY 35 >4HOX-A nrPDB Length = 559 Score = 25.4 bits (54), Expect = 6.0, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 42 NDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHID 80 N+ +++YT +L ++ + +I FK + +PG I+ Sbjct: 489 NNSVYAYTRTLGAEKYLVVINFKE-EVMHYTLPGDLSIN 526 >1PJB-A nrPDB Length = 361 Score = 25.4 bits (54), Expect = 6.0, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 37 QIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEV 73 QI+ +N + SY E+L G R + + N A + V Sbjct: 194 QIFDINVERLSYLETLFGSR--VELLYSNSAEIETAV 228 >2E2P-A nrPDB Length = 299 Score = 25.4 bits (54), Expect = 6.2, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Query: 74 PGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCV--------WNNKTP 114 PG+ H +AIE +K+ ++IA EA V + V W N TP Sbjct: 33 PGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGLDSKFDWENFTP 81 >4ML9-A nrPDB Length = 286 Score = 25.4 bits (54), Expect = 6.3, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 53 AGKREMAIITFKNGAIFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVE 104 G E+ + K F++ + G+ + K +E +KD ++ A+ V+ Sbjct: 113 GGFTEILPLELKEEDFFKIAMSGADGVHIHKSTLEDLKDVVKYAHKYGLLVD 164 >1PP2-R nrPDB Length = 122 Score = 25.4 bits (54), Expect = 7.0, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Query: 19 AHGTPQNITDLCAEYHNT---QIYTLNDKIFSYTES 51 HG PQ+ TD C H+ + N K SYT S Sbjct: 32 GHGLPQDATDRCCFVHDCCYGKATDCNPKTVSYTYS 67 >3ILX-A nrPDB Length = 143 Score = 25.0 bits (53), Expect = 9.0, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 26 ITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQHIDSQKKA 85 + ++C + HN +I LN + + E L +++F ++ SQ + KK Sbjct: 83 LEEVC-KAHNCEIVVLNQEDKTPEEELVEDLATILVSFSG----KLHGMRSQKYEKVKKC 137 Query: 86 IERMKD 91 E +K+ Sbjct: 138 AEELKN 143 >2X2N-A nrPDB Length = 475 Score = 25.0 bits (53), Expect = 9.0, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 13 LLSSAYAHGTPQNITDLC 30 LLS+ Y GTP ++ ++C Sbjct: 251 LLSAVYRDGTPMSLHEVC 268 >6D6Q-G nrPDB Length = 277 Score = 25.0 bits (53), Expect = 9.1, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 38 IYTLNDKIFSYTESLAGKREMAIITFKNGAIFQVEVPGSQ 77 +Y ++ + Y + G + I+T K+G IF+V+V GS+ Sbjct: 101 VYWVDSQQKRYV-PVKGDHVIGIVTAKSGDIFKVDVGGSE 139 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.315 0.134 0.388 Lambda K H 0.267 0.0406 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,775,769 Number of Sequences: 36641 Number of extensions: 166698 Number of successful extensions: 470 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 444 Number of HSP's gapped (non-prelim): 44 length of query: 124 length of database: 10,336,785 effective HSP length: 85 effective length of query: 39 effective length of database: 7,222,300 effective search space: 281669700 effective search space used: 281669700 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)