BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P01555
         (258 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1S5E-A nrPDB                                                          503   e-143
1LT3-A nrPDB                                                          414   e-116
2A5F-B nrPDB                                                          398   e-111
1LTI-A nrPDB                                                          355   1e-98
1TII-A nrPDB                                                          236   7e-63
4Z9C-A nrPDB                                                           46   2e-05
4Z9D-A nrPDB                                                           37   0.012
6GN0-E nrPDB                                                           32   0.29 
1PTO-A nrPDB                                                           29   1.8  
5TUM-A nrPDB                                                           28   4.9  
6B6L-A nrPDB                                                           27   9.3  

>1S5E-A nrPDB
          Length = 240

 Score =  503 bits (1296), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 19  NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV 78
           NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV
Sbjct: 1   NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV 60

Query: 79  STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP 138
           STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP
Sbjct: 61  STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP 120

Query: 139 YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI 198
           YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI
Sbjct: 121 YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI 180

Query: 199 HHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL 258
           HHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL
Sbjct: 181 HHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL 240


>1LT3-A nrPDB
          Length = 240

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/240 (80%), Positives = 218/240 (90%)

Query: 19  NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV 78
           N D+LYRADSRPPDEIK+SGGLMPRG +EYFDRGTQMNI LYDHARGTQTGFVR+DDGYV
Sbjct: 1   NGDRLYRADSRPPDEIKRSGGLMPRGHNEYFDRGTQMNICLYDHARGTQTGFVRYDDGYV 60

Query: 79  STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP 138
           STS+SLRSAHL GQ+ILSG+STYYIYVIATAPNMFNVNDVLG YSPHP EQEVSALGGIP
Sbjct: 61  STSLSLRSAHLAGQSILSGYSTYYIYVIATAPNMFNVNDVLGVYSPHPYEQEVSALGGIP 120

Query: 139 YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI 198
           YSQIYGWYRV+FGV+DE+LHRNR YRDRYY NL+IAPA DGY LA FPP+H+AWREEPWI
Sbjct: 121 YSQIYGWYRVNFGVIDERLHRNREYRDRYYRNLNIAPAEDGYRLACFPPDHQAWREEPWI 180

Query: 199 HHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL 258
           HHAP GCGN+ R+   +TC+E+TQ+L   +L EYQSKVKRQIFS YQS++D +NRI+DEL
Sbjct: 181 HHAPQGCGNSSRTITGDTCNEETQNLSTIYLREYQSKVKRQIFSDYQSEVDIYNRIRDEL 240


>2A5F-B nrPDB
          Length = 193

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/193 (97%), Positives = 192/193 (99%)

Query: 18  ANDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGY 77
           +NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGY
Sbjct: 1   SNDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGY 60

Query: 78  VSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGI 137
           VSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPD+Q+VSALGGI
Sbjct: 61  VSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDDQDVSALGGI 120

Query: 138 PYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPW 197
           PYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPW
Sbjct: 121 PYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPW 180

Query: 198 IHHAPPGCGNAPR 210
           IHHAPPG GNAPR
Sbjct: 181 IHHAPPGSGNAPR 193


>1LTI-A nrPDB
          Length = 192

 Score =  355 bits (910), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 167/192 (86%), Positives = 181/192 (94%)

Query: 19  NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV 78
           N D+LYRADSRPPDEIK+SGGLMPRG +EYFDRGTQMNINLYDHARGTQTGFVR+DDGYV
Sbjct: 1   NGDRLYRADSRPPDEIKRSGGLMPRGHNEYFDRGTQMNINLYDHARGTQTGFVRYDDGYV 60

Query: 79  STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP 138
           STS+SLRSAHL GQ+ILSG+STYYIYVIATAPNMFNVNDVLG YSPHP EQEVSALGGIP
Sbjct: 61  STSLSLRSAHLAGQSILSGYSTYYIYVIATAPNMFNVNDVLGVYSPHPYEQEVSALGGIP 120

Query: 139 YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI 198
           YSQIYGWYRV+FGV+DE+LHRNR YRDRYY NL+IAPA DGY LAGFPP+H+AWREEPWI
Sbjct: 121 YSQIYGWYRVNFGVIDERLHRNREYRDRYYRNLNIAPAEDGYRLAGFPPDHQAWREEPWI 180

Query: 199 HHAPPGCGNAPR 210
           HHAP GCGN+ R
Sbjct: 181 HHAPQGCGNSSR 192


>1TII-A nrPDB
          Length = 190

 Score =  236 bits (602), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 136/182 (74%)

Query: 24  YRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSIS 83
           +RADSR PDE+++SGGL+PRGQ E ++RGT +NINLYDHARGT TG  R++DGYVST+ +
Sbjct: 4   FRADSRTPDEVRRSGGLIPRGQDEAYERGTPININLYDHARGTATGNTRYNDGYVSTTTT 63

Query: 84  LRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIY 143
           LR AHL+GQ +L G++ YYIYV+A APN+F+VN VLG YSP+P E E +ALGGIP SQI 
Sbjct: 64  LRQAHLLGQNMLGGYNEYYIYVVAAAPNLFDVNGVLGRYSPYPSENEYAALGGIPLSQII 123

Query: 144 GWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPP 203
           GWYRV FG ++  +HRNR YR   +  L  AP  DGY +AGFP    AW E PW   AP 
Sbjct: 124 GWYRVSFGAIEGGMHRNRDYRRDLFRGLSAAPNEDGYRIAGFPDGFPAWEEVPWREFAPN 183

Query: 204 GC 205
            C
Sbjct: 184 SC 185


>4Z9C-A nrPDB
          Length = 241

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 17/112 (15%)

Query: 7   VFFIFLSSFS-YAN-DDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHAR 64
           +F +FL SFS YAN  D +YR DSRPP+EI + G            R    N NL  H R
Sbjct: 4   MFILFLISFSWYANATDFVYRVDSRPPEEIFRDGF-----------RSHGFNRNLQQHLR 52

Query: 65  GTQTGFVRHDDGYVSTSISLRSAHLVGQTILSG---HSTYYIYVIATAPNMF 113
           G        D  +++T+ SL   + + +   S    H   Y Y I  A N+F
Sbjct: 53  GDSCAAGSRDSAFIATTTSLIETYNIARQYYSSSGFHGRLYRYRI-RANNIF 103


>4Z9D-A nrPDB
          Length = 175

 Score = 36.6 bits (83), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 21  DKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVST 80
           D +YR DSRPP+EI + G            R    N NL  H RG        D  +++T
Sbjct: 5   DFVYRVDSRPPEEIFRDGF-----------RSHGFNRNLQQHLRGDSCAAGSRDSAFIAT 53

Query: 81  SISLRSAHLVGQTILSG---HSTYYIYVIATAPNMF 113
           + SL   + + +   S    H   Y Y I  A N+F
Sbjct: 54  TTSLIETYNIARQYYSSSGFHGRLYRYRIR-ANNIF 88


>6GN0-E nrPDB
          Length = 244

 Score = 32.0 bits (71), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 15/119 (12%)

Query: 29  RPPDEIKQSGGLMPRGQSEYFDRGTQMN--INLYDHARG------TQTGFVRHDDGYVST 80
           R   E+     L+ +G S  F++  Q    +  +   RG       + G V HDDGY+ST
Sbjct: 76  RQGQELDAGQKLIDQGMSAAFEKSGQAEQVVKTFRGTRGGDAFNAVEEGKVGHDDGYLST 135

Query: 81  SISLRSAHLVGQTILS---GHSTYYIYVIATAPN----MFNVNDVLGAYSPHPDEQEVS 132
           S++   A   GQ  +S   G S   +  I+   N    ++N    +       DEQ V+
Sbjct: 136 SLNPGVARSFGQGTISTVFGRSGIDVSGISNYKNAKAILYNKETDMRVLLSASDEQGVT 194


>1PTO-A nrPDB
          Length = 244

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 13/76 (17%)

Query: 12 LSSFSYAND--DKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTG 69
          ++S ++A+D    +YR DSRPP+++ Q+ G    G           N N+ +H  G    
Sbjct: 3  VTSPAWADDPPATVYRYDSRPPEDVFQN-GFTAWGN----------NDNVLEHLTGRSCQ 51

Query: 70 FVRHDDGYVSTSISLR 85
              +  +VSTS S R
Sbjct: 52 VGSSNSAFVSTSSSRR 67


>5TUM-A nrPDB
          Length = 410

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 41  MPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHL--VGQTILSGH 98
           MP     YFD  TQ+ +N +   R    G    D GY  + +S +  +L  VG  IL+G 
Sbjct: 281 MPESNDFYFDAITQVKMNSWTKGRIALVG----DAGYCPSPLSGQGNNLAFVGAYILAGE 336


>6B6L-A nrPDB
          Length = 776

 Score = 26.9 bits (58), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 110 PNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHF 150
           P+ +++ D+ G  SP   +      GG       GWYR HF
Sbjct: 40  PHDWSIEDIPGTNSPFTADAATEVAGGFTVGGT-GWYRKHF 79


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

1S5E-A nrPDB                                                          434   e-122
1LT3-A nrPDB                                                          428   e-120
1LTI-A nrPDB                                                          343   6e-95
2A5F-B nrPDB                                                          343   6e-95
1TII-A nrPDB                                                          295   1e-80
4Z9C-A nrPDB                                                          123   8e-29

Sequences not found previously or not previously below threshold:

4Z9D-A nrPDB                                                          106   1e-23
4K6L-G nrPDB                                                           58   5e-09
1PTO-A nrPDB                                                           47   1e-05
4TLV-A nrPDB                                                           32   0.20 
2YFH-A nrPDB                                                           29   1.6  
1HRD-A nrPDB                                                           29   1.8  
2P8I-A nrPDB                                                           28   2.9  
1GLD-G nrPDB                                                           28   3.0  
1MKP-A nrPDB                                                           28   3.4  

>1S5E-A nrPDB
          Length = 240

 Score =  434 bits (1117), Expect = e-122,   Method: Composition-based stats.
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 19  NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV 78
           NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV
Sbjct: 1   NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV 60

Query: 79  STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP 138
           STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP
Sbjct: 61  STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP 120

Query: 139 YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI 198
           YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI
Sbjct: 121 YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI 180

Query: 199 HHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL 258
           HHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL
Sbjct: 181 HHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL 240


>1LT3-A nrPDB
          Length = 240

 Score =  428 bits (1101), Expect = e-120,   Method: Composition-based stats.
 Identities = 194/240 (80%), Positives = 218/240 (90%)

Query: 19  NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV 78
           N D+LYRADSRPPDEIK+SGGLMPRG +EYFDRGTQMNI LYDHARGTQTGFVR+DDGYV
Sbjct: 1   NGDRLYRADSRPPDEIKRSGGLMPRGHNEYFDRGTQMNICLYDHARGTQTGFVRYDDGYV 60

Query: 79  STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP 138
           STS+SLRSAHL GQ+ILSG+STYYIYVIATAPNMFNVNDVLG YSPHP EQEVSALGGIP
Sbjct: 61  STSLSLRSAHLAGQSILSGYSTYYIYVIATAPNMFNVNDVLGVYSPHPYEQEVSALGGIP 120

Query: 139 YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI 198
           YSQIYGWYRV+FGV+DE+LHRNR YRDRYY NL+IAPA DGY LA FPP+H+AWREEPWI
Sbjct: 121 YSQIYGWYRVNFGVIDERLHRNREYRDRYYRNLNIAPAEDGYRLACFPPDHQAWREEPWI 180

Query: 199 HHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL 258
           HHAP GCGN+ R+   +TC+E+TQ+L   +L EYQSKVKRQIFS YQS++D +NRI+DEL
Sbjct: 181 HHAPQGCGNSSRTITGDTCNEETQNLSTIYLREYQSKVKRQIFSDYQSEVDIYNRIRDEL 240


>1LTI-A nrPDB
          Length = 192

 Score =  343 bits (879), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 167/192 (86%), Positives = 181/192 (94%)

Query: 19  NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYV 78
           N D+LYRADSRPPDEIK+SGGLMPRG +EYFDRGTQMNINLYDHARGTQTGFVR+DDGYV
Sbjct: 1   NGDRLYRADSRPPDEIKRSGGLMPRGHNEYFDRGTQMNINLYDHARGTQTGFVRYDDGYV 60

Query: 79  STSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIP 138
           STS+SLRSAHL GQ+ILSG+STYYIYVIATAPNMFNVNDVLG YSPHP EQEVSALGGIP
Sbjct: 61  STSLSLRSAHLAGQSILSGYSTYYIYVIATAPNMFNVNDVLGVYSPHPYEQEVSALGGIP 120

Query: 139 YSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWI 198
           YSQIYGWYRV+FGV+DE+LHRNR YRDRYY NL+IAPA DGY LAGFPP+H+AWREEPWI
Sbjct: 121 YSQIYGWYRVNFGVIDERLHRNREYRDRYYRNLNIAPAEDGYRLAGFPPDHQAWREEPWI 180

Query: 199 HHAPPGCGNAPR 210
           HHAP GCGN+ R
Sbjct: 181 HHAPQGCGNSSR 192


>2A5F-B nrPDB
          Length = 193

 Score =  343 bits (879), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 189/193 (97%), Positives = 192/193 (99%)

Query: 18  ANDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGY 77
           +NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGY
Sbjct: 1   SNDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGY 60

Query: 78  VSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGI 137
           VSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPD+Q+VSALGGI
Sbjct: 61  VSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDDQDVSALGGI 120

Query: 138 PYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPW 197
           PYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPW
Sbjct: 121 PYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPW 180

Query: 198 IHHAPPGCGNAPR 210
           IHHAPPG GNAPR
Sbjct: 181 IHHAPPGSGNAPR 193


>1TII-A nrPDB
          Length = 190

 Score =  295 bits (755), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 110/182 (60%), Positives = 136/182 (74%)

Query: 24  YRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSIS 83
           +RADSR PDE+++SGGL+PRGQ E ++RGT +NINLYDHARGT TG  R++DGYVST+ +
Sbjct: 4   FRADSRTPDEVRRSGGLIPRGQDEAYERGTPININLYDHARGTATGNTRYNDGYVSTTTT 63

Query: 84  LRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIY 143
           LR AHL+GQ +L G++ YYIYV+A APN+F+VN VLG YSP+P E E +ALGGIP SQI 
Sbjct: 64  LRQAHLLGQNMLGGYNEYYIYVVAAAPNLFDVNGVLGRYSPYPSENEYAALGGIPLSQII 123

Query: 144 GWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPP 203
           GWYRV FG ++  +HRNR YR   +  L  AP  DGY +AGFP    AW E PW   AP 
Sbjct: 124 GWYRVSFGAIEGGMHRNRDYRRDLFRGLSAAPNEDGYRIAGFPDGFPAWEEVPWREFAPN 183

Query: 204 GC 205
            C
Sbjct: 184 SC 185


>4Z9C-A nrPDB
          Length = 241

 Score =  123 bits (308), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 17/112 (15%)

Query: 7   VFFIFLSSFS-YAN-DDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHAR 64
           +F +FL SFS YAN  D +YR DSRPP+EI + G            R    N NL  H R
Sbjct: 4   MFILFLISFSWYANATDFVYRVDSRPPEEIFRDGF-----------RSHGFNRNLQQHLR 52

Query: 65  GTQTGFVRHDDGYVSTSISLRSAHLVGQTILSG---HSTYYIYVIATAPNMF 113
           G        D  +++T+ SL   + + +   S    H   Y Y I  A N+F
Sbjct: 53  GDSCAAGSRDSAFIATTTSLIETYNIARQYYSSSGFHGRLYRYRI-RANNIF 103


>4Z9D-A nrPDB
          Length = 175

 Score =  106 bits (265), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 20  DDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVS 79
            D +YR DSRPP+EI + G            R    N NL  H RG        D  +++
Sbjct: 4   TDFVYRVDSRPPEEIFRDGF-----------RSHGFNRNLQQHLRGDSCAAGSRDSAFIA 52

Query: 80  TSISLRSAHLVGQTILSG---HSTYYIYVIATAPNMF 113
           T+ SL   + + +   S    H   Y Y I  A N+F
Sbjct: 53  TTTSLIETYNIARQYYSSSGFHGRLYRYRI-RANNIF 88


>4K6L-G nrPDB
          Length = 224

 Score = 57.7 bits (138), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 50/158 (31%), Gaps = 38/158 (24%)

Query: 21  DKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVST 80
           D +YR DS PPD I + G  +              N N      G        D  Y++T
Sbjct: 2   DFVYRVDSTPPDVIFRDGFSL-----------LGYNRNFQQFISGRSCSGGSSDSRYIAT 50

Query: 81  SISLRSAHLVGQTILSG---HSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGI 137
           + S+   + + +   S        Y Y I    N          YS  P    +   GG 
Sbjct: 51  TSSVNQTYAIARAYYSRSTFKGNLYRYQIRADNNF---------YSLLPSITYLETQGG- 100

Query: 138 PYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAP 175
                      HF   ++ + R    +  Y S L I P
Sbjct: 101 -----------HFNAYEKTMMR---LQREYVSTLSILP 124


>1PTO-A nrPDB
          Length = 244

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 27/105 (25%)

Query: 23  LYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSI 82
           +YR DSRPP+++ Q+G                 N N+ +H  G        +  +VSTS 
Sbjct: 16  VYRYDSRPPEDVFQNGFT-----------AWGNNDNVLEHLTGRSCQVGSSNSAFVSTSS 64

Query: 83  SLR--------------SAHLVGQTILSGHSTYYIYVIATAPNMF 113
           S R               A   G+   +GH   YIY +    N +
Sbjct: 65  SRRYTEVYLEHRMQEAVEAERAGRG--TGHFIGYIYEVRADNNFY 107


>4TLV-A nrPDB
          Length = 591

 Score = 32.3 bits (72), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 22 KLYRADSRPPDEIKQSGGLMPRGQSEYFDR--GTQMNINLYDHARGTQTGFVRH 73
           +YR D R P+EI + G         +F+    T    + +     T T  +R 
Sbjct: 9  FVYRVDLRSPEEIFEHGFSTLGDVRNFFEHILSTNFGRSYFISTSETPTAAIRF 62


>2YFH-A nrPDB
          Length = 448

 Score = 29.2 bits (64), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 115 VNDVLGAYSP----HPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSN 170
           V +VL +  P    HP+ +EV+ L  +   +    +RV +   + ++H N GYR ++  N
Sbjct: 26  VEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQF--N 83

Query: 171 LDIAPAADGYGLA 183
             I P   G   A
Sbjct: 84  GAIGPYKGGLRFA 96


>1HRD-A nrPDB
          Length = 449

 Score = 29.2 bits (64), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 115 VNDVLGAYSP----HPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSN 170
           V +VL +  P    HP+ +EV+ L  +   +    +RV +   + ++H N GYR ++  N
Sbjct: 25  VEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQF--N 82

Query: 171 LDIAPAADGYGLA 183
             I P   G   A
Sbjct: 83  GAIGPYKGGLRFA 95


>2P8I-A nrPDB
          Length = 117

 Score = 28.5 bits (62), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 124 PHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRN-----RGYRD 165
           PHP      A     ++ + GW  ++ G LD  LH N     R +RD
Sbjct: 54  PHPMWSYQLAFTQEQFADLVGWLTLNHGALDIFLHPNTGDALRDHRD 100


>1GLD-G nrPDB
          Length = 501

 Score = 28.5 bits (62), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 116 NDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAP 175
           +D+LG     P+ +EV+ALG    + +   +  +   L E+    R +R        I  
Sbjct: 423 SDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRP------GIET 476

Query: 176 AADGYGLAGFPPEHR---AWRE 194
               Y  AG+    +   AW E
Sbjct: 477 TERNYRYAGWKKAVKRAMAWEE 498


>1MKP-A nrPDB
          Length = 144

 Score = 28.5 bits (62), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 57  INLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVN 116
           I+  D ARG   G + H    +S S+++  A+L+ +  LS +  Y I  +  +    N N
Sbjct: 73  ISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLMQKLNLSMNDAYDIVKMKKSNISPNFN 132


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.313    0.136    0.402 

Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,180,642
Number of Sequences: 36641
Number of extensions: 482038
Number of successful extensions: 1086
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 34
length of query: 258
length of database: 10,336,785
effective HSP length: 95
effective length of query: 163
effective length of database: 6,855,890
effective search space: 1117510070
effective search space used: 1117510070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 58 (26.9 bits)