BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P00445
(154 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1F1A-A nrPDB 309 3e-85
3CE1-A nrPDB 196 2e-51
3KBF-A nrPDB 176 3e-45
5IN2-A nrPDB 176 5e-45
1SRD-A nrPDB 174 2e-44
3LTV-A nrPDB 172 4e-44
4RVP-A nrPDB 171 1e-43
3KM2-A nrPDB 169 4e-43
5YTU-A nrPDB 167 1e-42
3ECW-A nrPDB 165 6e-42
3F7K-A nrPDB 164 1e-41
1TO4-A nrPDB 160 2e-40
3L9Y-A nrPDB 159 3e-40
3HW7-A nrPDB 159 4e-40
1XSO-A nrPDB 158 7e-40
2Q2L-A nrPDB 154 1e-38
4OJA-A nrPDB 151 9e-38
3MND-A nrPDB 148 1e-36
2MP3-A nrPDB 130 2e-31
2E47-A nrPDB 128 1e-30
6FON-A nrPDB 119 7e-28
6FOL-A nrPDB 118 1e-27
2JLP-A nrPDB 103 2e-23
4U4I-A nrPDB 100 2e-22
6FLH-A nrPDB 84 3e-17
4XCR-A nrPDB 66 8e-12
5J0G-A nrPDB 64 3e-11
5J07-A nrPDB 55 1e-08
2AQS-A nrPDB 49 8e-07
5J0F-A nrPDB 49 9e-07
5J0C-A nrPDB 49 9e-07
1U3N-A nrPDB 47 3e-06
1Z9P-A nrPDB 45 9e-06
2APS-A nrPDB 45 1e-05
1Z9N-A nrPDB 45 1e-05
1YAI-A nrPDB 44 2e-05
2WWN-A nrPDB 43 5e-05
4L05-A nrPDB 39 0.001
1PZS-A nrPDB 39 0.001
1ESO-A nrPDB 37 0.003
2K4W-A nrPDB 37 0.004
4N3U-A nrPDB 37 0.005
5VA1-A nrPDB 35 0.013
2XIK-A nrPDB 34 0.020
2N7G-A nrPDB 34 0.024
4L11-A nrPDB 32 0.087
5EGN-A nrPDB 31 0.18
4FZF-B nrPDB 29 0.93
4BIN-A nrPDB 28 2.1
2XS2-A nrPDB 27 2.5
6ADQ-Y nrPDB 25 10.0
>1F1A-A nrPDB
Length = 154
Score = 309 bits (792), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/154 (99%), Positives = 153/154 (99%)
Query: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVS 60
MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHI EFGDATNGCVS
Sbjct: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIQEFGDATNGCVS 60
Query: 61 AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI 120
AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI
Sbjct: 61 AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI 120
Query: 121 HAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
HAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN
Sbjct: 121 HAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
>3CE1-A nrPDB
Length = 168
Score = 196 bits (499), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 114/151 (75%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
++A+AVLKGD+ V GV+ F Q S P TVS EI NA+RGFH+H+FGD +NGC SA
Sbjct: 5 IKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANAQRGFHVHQFGDNSNGCTSA 64
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
GPHFNP HG T EVRHVGD+GNVKTD +GVAK DS + L+GP S++GR++VIH
Sbjct: 65 GPHFNPTGTNHGDRTAEVRHVGDLGNVKTDASGVAKVQISDSQLSLVGPHSIIGRTIVIH 124
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
AG+DDLGK D ESLKTGNAG R ACGVIG+
Sbjct: 125 AGEDDLGKTDHPESLKTGNAGARSACGVIGI 155
>3KBF-A nrPDB
Length = 157
Score = 176 bits (447), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 112/153 (73%), Gaps = 5/153 (3%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVL+G+ V+G + Q SE++ + EI G +P GFH+H++GD+TNGC+SAG
Sbjct: 3 RAVAVLRGET-VTGTIWITQKSENDQAVIEGEIKGLTPGL-HGFHVHQYGDSTNGCISAG 60
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNPF KTHG P E+RHVGD+GNV+ +GVAK D+L+ L GP +VVGRS+V+HA
Sbjct: 61 PHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHA 120
Query: 123 GQDDLGKG---DTEESLKTGNAGPRPACGVIGL 152
GQDDLG+G EES KTGNAG R ACGVI L
Sbjct: 121 GQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 153
>5IN2-A nrPDB
Length = 158
Score = 176 bits (445), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 110/153 (71%), Gaps = 4/153 (2%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVL+GDAGVSG++ F+Q S TT+S ++G +P GFH+H++GD TNGC SAG
Sbjct: 3 RAVAVLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLH-GFHVHQYGDQTNGCTSAG 61
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
H+NPF KTHG P D ++H+GD+GN+ NGVA+ IKL GP SV+G S+V+HA
Sbjct: 62 DHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHA 121
Query: 123 GQDDLGKGD---TEESLKTGNAGPRPACGVIGL 152
DDLG+G EESLKTGNAG R ACGVIG+
Sbjct: 122 NTDDLGQGTGNMREESLKTGNAGSRLACGVIGI 154
>1SRD-A nrPDB
Length = 154
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKG + V GVV Q + PTTV+ I+G +P + GFH+HEFGD TNGC+S G
Sbjct: 4 KAVAVLKGTSNVEGVVTLTQEDDG-PTTVNVRISGLAP-GKHGFHLHEFGDTTNGCMSTG 61
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP KKTHGAP DEVRH GD+GN+ + +GVA+ + D+ I L GP SVVGR++V+H
Sbjct: 62 PHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHE 121
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLGKG E S TGNAG R ACGV+GLT
Sbjct: 122 LEDDLGKGGHELSPTTGNAGGRLACGVVGLT 152
>3LTV-A nrPDB
Length = 153
Score = 172 bits (437), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
++AV VLKGD V G + FEQ + EP +S +I G + + GFH+H++GD T GC SA
Sbjct: 2 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLT-EGQHGFHVHQYGDNTQGCTSA 60
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
GPHFNP K HG P DE RHVGD+GNV D++GVA S +DS+I L G ++GR++V+H
Sbjct: 61 GPHFNPHSKKHGGPADEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVH 120
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
DDLGKG EES KTGNAG R ACGVIG+
Sbjct: 121 EKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 153
>4RVP-A nrPDB
Length = 158
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 108/151 (71%), Gaps = 2/151 (1%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKG++ V GVV Q E PTTV+ I G +P GFH+HEFGD TNGC+S G
Sbjct: 8 KAVAVLKGNSAVEGVVTLTQ-EEDGPTTVNVRITGLTP-GPHGFHLHEFGDTTNGCISTG 65
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP THGAP DE+RH GD+GN+ + +GVA+ + D+ I L GP +VVGR+ V+H
Sbjct: 66 PHFNPKGLTHGAPEDEIRHAGDLGNIVANADGVAEVTIVDNQIPLTGPNAVVGRAFVVHE 125
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLGKG E SL TGNAG R ACGVIGLT
Sbjct: 126 LEDDLGKGGHELSLSTGNAGGRLACGVIGLT 156
>3KM2-A nrPDB
Length = 154
Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKG++ V GVV Q + PTTV+ I G +P GFH+HE+GD TNGC+S G
Sbjct: 4 KAVAVLKGNSNVEGVVTLSQ-DDDGPTTVNVRITGLAPGL-HGFHLHEYGDTTNGCMSTG 61
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
HFNP K THGAP DE+RH GD+GN+ + +GVA+ + D+ I L GP SVVGR++V+H
Sbjct: 62 AHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHE 121
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLGKG E SL TGNAG R ACGV+GLT
Sbjct: 122 LEDDLGKGGHELSLTTGNAGGRLACGVVGLT 152
>5YTU-A nrPDB
Length = 180
Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VLKGD V G++ FEQ + P V I G + GFH+HEFGD T GC SAG
Sbjct: 30 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGL-HGFHVHEFGDNTAGCTSAG 88
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP + HG P DE RHVGD+GNV D++GVA S +DS+I L G ++GR++V+H
Sbjct: 89 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHE 148
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
DDLGKG EES KTGNAG R ACGVIG+
Sbjct: 149 KADDLGKGGNEESTKTGNAGSRLACGVIGI 178
>3ECW-A nrPDB
Length = 153
Score = 165 bits (418), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VLKGD V G++ FEQ + P V I G + GFH+HEFGD GC SAG
Sbjct: 3 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGL-HGFHVHEFGDNRAGCTSAG 61
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP + HG P DE RHVGD+GNV D++GVA S +DS+I L G ++GR++V+H
Sbjct: 62 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHE 121
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
DDLGKG EES KTGNAG R ACGVIG+
Sbjct: 122 KADDLGKGGNEESTKTGNAGSRLACGVIGI 151
>3F7K-A nrPDB
Length = 152
Score = 164 bits (415), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
+ AV VLKGD+ V+G + ++ E + TV+ EI G +P + GFH+HEFGD TNGC SA
Sbjct: 2 IHAVCVLKGDSPVTGTIHLKE--EGDMVTVTGEITGLTP-GKHGFHVHEFGDNTNGCTSA 58
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
G HFNP K HGAP DE RH GD+GNV E+G A + KD L+KL GP SV+GR++V+H
Sbjct: 59 GGHFNPHGKEHGAPEDENRHAGDLGNVVAGEDGKAVINMKDKLVKLTGPDSVIGRTLVVH 118
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLG+G E+S TGNAG R ACGVIG+T
Sbjct: 119 VDEDDLGRGGHEQSKITGNAGGRLACGVIGIT 150
>1TO4-A nrPDB
Length = 156
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
++AV V+ G AGV GVVKF Q +++ P V E +G + GFH+HEFGD TNGC SA
Sbjct: 4 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKA-GKHGFHVHEFGDTTNGCTSA 62
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
G HFNP K+ HGAP D +RHVGD+GNV +G A + D LI L G S++GRS+VIH
Sbjct: 63 GAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIH 122
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
+DDLG+G E S TGNAG R ACGV+GL
Sbjct: 123 ENEDDLGRGGHELSKVTGNAGGRLACGVVGL 153
>3L9Y-A nrPDB
Length = 154
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 105/151 (69%), Gaps = 4/151 (2%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VL+GD VSG V F+Q E P VS E+ G + + GFH+HEFGD TNGC SAG
Sbjct: 4 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLT-KGKHGFHVHEFGDNTNGCTSAG 60
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDEN-GVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
HFNP K+ HG P+ VRHVGD+GN++ E+ GV K S +DS I L GP S++GR++V+H
Sbjct: 61 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVH 120
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
A DDLG G E S TGNAG R ACGVIGL
Sbjct: 121 ADPDDLGLGGNELSKTTGNAGGRIACGVIGL 151
>3HW7-A nrPDB
Length = 151
Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VLKGD V G + FE ++ + V+ I G + + GFH+H+FGD T GC SAG
Sbjct: 3 KAVCVLKGDGPVQGTIHFE--AKGDTVVVTGSITGLT-EGDHGFHVHQFGDNTQGCTSAG 59
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP K HG P DE RHVGD+GNV D+NGVA D LI L G S++GR++V+H
Sbjct: 60 PHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHE 119
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
DDLG+G EES KTGNAG R ACGVIG+
Sbjct: 120 KPDDLGRGGNEESTKTGNAGSRLACGVIGI 149
>1XSO-A nrPDB
Length = 150
Score = 158 bits (400), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 103/152 (67%), Gaps = 3/152 (1%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
V+AV VL G V GVV FEQ E +V +I G + + GFHIH FGD TNGC+SA
Sbjct: 1 VKAVCVLAGSGDVKGVVHFEQQDEG-AVSVEGKIEGLT-DGLHGFHIHVFGDNTNGCMSA 58
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
G HFNP K HGAP D RHVGD+GNV T E GVA+ DSLI L GP S++GR+ V+H
Sbjct: 59 GSHFNPENKNHGAPGDTDRHVGDLGNV-TAEGGVAQFKITDSLISLKGPNSIIGRTAVVH 117
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
DDLGKG +ESLKTGNAG R ACGVIG +
Sbjct: 118 EKADDLGKGGNDESLKTGNAGGRLACGVIGYS 149
>2Q2L-A nrPDB
Length = 152
Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 99/152 (65%), Gaps = 2/152 (1%)
Query: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVS 60
M + VAVL GV+G + F Q + PTTV+ I+G P GFH+H GD TNGC+S
Sbjct: 1 MAKGVAVLSSSEGVAGTILFTQEGDG-PTTVTGNISGLKPGL-HGFHVHALGDTTNGCMS 58
Query: 61 AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI 120
GPHFNP K HG+P DE RH GD+GN+ ++G A + D I L GP S++GR+VV+
Sbjct: 59 TGPHFNPAGKEHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVV 118
Query: 121 HAGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
HA DDLGKG E S TGNAG R ACG+IGL
Sbjct: 119 HADPDDLGKGGHELSKSTGNAGGRIACGIIGL 150
>4OJA-A nrPDB
Length = 170
Score = 151 bits (382), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
+ A+ VL+G V G +KFE + + T VS +I G P + GFHIH+FGD + GC+S
Sbjct: 21 MSAICVLEGI--VKGTIKFEDIGDGK-THVSGKITGLQPPGKHGFHIHQFGDYSGGCMST 77
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
GPHFNPF K HG P DE RH GD+GN+ +D+ G A + +DS I L GP S++GR++V+H
Sbjct: 78 GPHFNPFNKEHGGPEDENRHAGDLGNIVSDDYGNADVNIEDSQIPLDGPNSIIGRALVVH 137
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
+DDLG G ++S TGNAG R +CGVIGL
Sbjct: 138 QNEDDLGLGGHKDSKTTGNAGARLSCGVIGL 168
>3MND-A nrPDB
Length = 152
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 96/151 (63%), Gaps = 3/151 (1%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
++AV V++G+ GV GVV F QA ++ V E G P + GFH+HEFGD T GC SA
Sbjct: 1 MKAVCVMRGEEGVKGVVHFTQAGDA--VKVHAEFEGLKP-GKHGFHVHEFGDTTQGCTSA 57
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
G HFNP K HGAP RHVGD+GNV +G A D +I L G SV+GRS+VIH
Sbjct: 58 GAHFNPHGKNHGAPDAAERHVGDLGNVTAGADGKATLDLTDKMISLTGEHSVIGRSLVIH 117
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
DDLG G E SL TGNAG R ACG+IG+
Sbjct: 118 VDPDDLGLGGHELSLITGNAGGRVACGIIGI 148
>2MP3-A nrPDB
Length = 132
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VLKGD V G++ FEQ + P V I G + GFH+HEFGD T GC SAG
Sbjct: 10 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGL-HGFHVHEFGDNTAGCTSAG 68
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP + HG P DE RHVGD+GNV D++GVA S +DS+I L G ++GR++V+H
Sbjct: 69 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHE 128
Query: 123 GQDD 126
DD
Sbjct: 129 KADD 132
>2E47-A nrPDB
Length = 156
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+A+AVL + + G + F Q + + V I G P E GFH+HE GD + GC+S G
Sbjct: 9 RAIAVLSTET-IRGNITFTQVQDGK-VHVQGGITGLPP-GEYGFHVHEKGDLSGGCLSTG 65
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
HFNP K HG P D RHVGD+GNV DEN ++ D I L GP ++GR+VV+H
Sbjct: 66 SHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHE 125
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
DD GK D +S KTGNAG R ACGVIG+
Sbjct: 126 KADDYGKSDHPDSRKTGNAGGRVACGVIGI 155
>6FON-A nrPDB
Length = 252
Score = 119 bits (297), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 87/147 (59%), Gaps = 5/147 (3%)
Query: 4 AVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGP 63
AVA+L G V GVV+F Q + E + I G P G H+H++GD TN C S G
Sbjct: 82 AVAILGGPGTVQGVVRFLQLT-PERCLIEGTIDGLEPGLH-GLHVHQYGDLTNNCNSCGN 139
Query: 64 HFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAG 123
HFNP +HG P D RH GD+GNV+ D +G A +D +K+ V+GRS++I G
Sbjct: 140 HFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEG 196
Query: 124 QDDLGKGDTEESLKTGNAGPRPACGVI 150
+DDLG+G S TGN+G R ACG+I
Sbjct: 197 EDDLGRGGHPLSKITGNSGERLACGII 223
>6FOL-A nrPDB
Length = 150
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 87/147 (59%), Gaps = 5/147 (3%)
Query: 4 AVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGP 63
AVA+L G V GVV+F Q + E + I G P G H+H++GD TN C S G
Sbjct: 7 AVAILGGPGTVQGVVRFLQLT-PERCLIEGTIDGLEPGLH-GLHVHQYGDLTNNCNSCGN 64
Query: 64 HFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAG 123
HFNP +HG P D RH GD+GNV+ D +G A +D +K+ V+GRS++I G
Sbjct: 65 HFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEG 121
Query: 124 QDDLGKGDTEESLKTGNAGPRPACGVI 150
+DDLG+G S TGN+G R ACG+I
Sbjct: 122 EDDLGRGGHPLSKITGNSGERLACGII 148
>2JLP-A nrPDB
Length = 222
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 12/144 (8%)
Query: 14 VSGVVKFEQASESEPTTVSYEIAG--NSPNAE-RGFHIHEFGDATNGCVSAGPHFNPFKK 70
V+GVV F Q + + + G PN+ R H+H+FGD + GC S GPH+NP
Sbjct: 60 VTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAV 119
Query: 71 THGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLI-KLIGPTSVVGRSVVIHAGQDDLGK 129
H +H GD GN + + + ++ L L GP S+VGR+VV+HAG+DDLG+
Sbjct: 120 PH------PQHPGDFGNFAVRDGSLWR--YRAGLAASLAGPHSIVGRAVVVHAGEDDLGR 171
Query: 130 GDTEESLKTGNAGPRPACGVIGLT 153
G + S++ GNAG R AC V+G+
Sbjct: 172 GGNQASVENGNAGRRLACCVVGVC 195
>4U4I-A nrPDB
Length = 161
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 16 GVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAP 75
G F Q + T + + + N P + G HIH+ GD NGC S GPHFNPF H
Sbjct: 26 GYAIFTQLPDC--TEIQFHLK-NLPPGKHGCHIHKSGDRRNGCTSMGPHFNPFNGVHKDI 82
Query: 76 TDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEES 135
+ H+GD+GN+ + NG + L G ++GR +VIH +DDLG + +S
Sbjct: 83 NIQHNHLGDLGNIVVNNNGECNEIICVKYLPLTGSNQIIGRGLVIHEKEDDLGMTNHPDS 142
Query: 136 LKTGNAGPRPACGVIGLTN 154
TGN+G R ACG+I N
Sbjct: 143 KTTGNSGDRIACGIIAYLN 161
>6FLH-A nrPDB
Length = 118
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 78/152 (51%), Gaps = 36/152 (23%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKGD V G++ FEQ + P V I G + GFH+HE G AG
Sbjct: 3 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGL-HGFHVHEEG--------AG 53
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
HVGD+GNV D++GVA S +DS+I L G S++GR++V+H
Sbjct: 54 ------------------HVGDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVHE 95
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
DD G G GNAG R A GVIG+
Sbjct: 96 KADD-GAG--------GNAGSRLASGVIGIAQ 118
>4XCR-A nrPDB
Length = 110
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 69/152 (45%), Gaps = 44/152 (28%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKGD V G++ FEQ + P V + A GFH+H G
Sbjct: 3 KAVAVLKGDGPVQGIINFEQKESNGPVKV-WGSAKGLTEGLHGFHVHGAG---------- 51
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
GD+GNV D++GVA S +DS+I L G S++GR++V+H
Sbjct: 52 --------------------GDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVH- 90
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
+ G G AG R A GVIG+
Sbjct: 91 --EKAGAG----------AGSRLASGVIGIAQ 110
>5J0G-A nrPDB
Length = 113
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 31/119 (26%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKGD V G++ FEQ + P V I G + GFH+H G
Sbjct: 21 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGL-HGFHVHGAG---------- 69
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
GD+GNV D++GVA S +DS+I L G S++GR++V+H
Sbjct: 70 --------------------GDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVH 108
>5J07-A nrPDB
Length = 115
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 44/141 (31%)
Query: 14 VSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHG 73
V G++ FEQ + P V I G + GFH+H G
Sbjct: 3 VQGIINFEQKESNGPVKVWGSIKGLTEGL-HGFHVHGAG--------------------- 40
Query: 74 APTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTE 133
GD+GNV D++GVA S +DS+I L G S++GR++V+H + G G
Sbjct: 41 ---------GDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVH---EKAGAG--- 85
Query: 134 ESLKTGNAGPRPACGVIGLTN 154
AG R A GVIG+
Sbjct: 86 -------AGSRLASGVIGIAQ 99
>2AQS-A nrPDB
Length = 164
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 44 RGFHIHEF---------GDATNGCVSAGPHFNPF-KKTHGAPTDEVRHVGDMGNVKTDEN 93
GFHIHE G+ T G + AG H++P K HG P + H+GD+ + +
Sbjct: 54 HGFHIHENPSCEPKEEEGELTAG-LGAGGHWDPKGAKQHGYPWQDDAHLGDLPALTVLHD 112
Query: 94 GVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
G A +K + V G S++IH G D+ ++ G GPR ACGVI
Sbjct: 113 GTATNPVLAPRLKHL--DDVRGHSIMIHTGGDN----HSDHPAPLGGGGPRMACGVI 163
>5J0F-A nrPDB
Length = 114
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 13/72 (18%)
Query: 83 GDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAG 142
GD+GNV D++GVA S +DS+I L G S++GR++V+H + G G AG
Sbjct: 2 GDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVH---EKAGAG----------AG 48
Query: 143 PRPACGVIGLTN 154
R A GVIG+
Sbjct: 49 SRLASGVIGIAQ 60
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIH 49
+AVAVLKGD V G++ FEQ + P V I G + GFH+H
Sbjct: 67 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGL-HGFHVH 112
>5J0C-A nrPDB
Length = 114
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 13/72 (18%)
Query: 83 GDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAG 142
GD+GNV D++GVA S +DS+I L G S++GR++V+H + G G AG
Sbjct: 27 GDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVH---EKAGAG----------AG 73
Query: 143 PRPACGVIGLTN 154
R A GVIG+
Sbjct: 74 SRLASGVIGIAQ 85
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 3 QAVAVLKGDAGVSGVVKFEQ 22
+AVAVLKGD V G++ FEQ
Sbjct: 92 KAVAVLKGDGPVQGIINFEQ 111
>1U3N-A nrPDB
Length = 162
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 22/145 (15%)
Query: 18 VKFEQASESEPTTVSYEIAGNS--PNAERGFHIHEFGDATNGCV-----SAGPHFNPFKK 70
V F + ES+ + I+ NS P A GFHI+E G CV SAG FNP K
Sbjct: 21 VGFIEIKESDDEGLDIHISANSLRPGASLGFHIYEKG----SCVRPDFESAGGPFNPLNK 76
Query: 71 THGAPTDEVRHVGDMGNVKTDENGVAKGSFK--DSLIKLIGPTSVV---GRSVVIHAGQD 125
HG H GD+ N++ +G D+ +K +++ G + +IH D
Sbjct: 77 EHGFNNPMGHHAGDLPNLEVGADGKVDVIMNAPDTSLKKGSKLNILDEDGSAFIIHEQAD 136
Query: 126 DLGKGDTEESLKTGNAGPRPACGVI 150
D + +GN+G R CG +
Sbjct: 137 DY------LTNPSGNSGARIVCGAL 155
>1Z9P-A nrPDB
Length = 155
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 44 RGFHIHEF---------GDATNGCVSAGPHFNPFK-KTHGAPTDEVRHVGDMGNVKTDEN 93
GFHIHE G G + AG H++P + + HG P + H+GD+ + +
Sbjct: 45 HGFHIHEKPSCEPKEKDGKLVAG-LGAGGHWDPKQTQKHGYPWSDDAHMGDLPALFVMHD 103
Query: 94 GVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
G A +K + V G S++IHAG D+ ++ G GPR ACGVI
Sbjct: 104 GSATTPVLAPRLKKL--AEVKGHSLMIHAGGDN----HSDHPAPLGGGGPRMACGVI 154
>2APS-A nrPDB
Length = 162
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 44 RGFHIHEF---------GDATNGCVSAGPHFNPFK-KTHGAPTDEVRHVGDMGNVKTDEN 93
GFHIH+ G G + AG H++P + K HG P + H+GD+ + + +
Sbjct: 52 HGFHIHQNPSCEPKEKDGKLVAG-LGAGGHWDPKETKQHGYPWSDNAHLGDLPALFVEHD 110
Query: 94 GVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
G A +K + V G S++IH G D+ ++ G GPR ACGVI
Sbjct: 111 GSATNPVLAPRLKKL--DEVKGHSLMIHEGGDN----HSDHPAPLGGGGPRMACGVI 161
>1Z9N-A nrPDB
Length = 177
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 44 RGFHIHEF---------GDATNGCVSAGPHFNPFK-KTHGAPTDEVRHVGDMGNVKTDEN 93
GFHIHE G G + AG H++P + + HG P + H+GD+ + +
Sbjct: 67 HGFHIHEKPSCEPKEKDGKLVAG-LGAGGHWDPKQTQKHGYPWSDDAHMGDLPALFVMHD 125
Query: 94 GVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
G A +K + V G S++IHAG D+ ++ G GPR ACGVI
Sbjct: 126 GSATTPVLAPRLKKL--AEVKGHSLMIHAGGDN----HSDHPAPLGGGGPRMACGVI 176
>1YAI-A nrPDB
Length = 151
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 34 EIAGNSPNAERGFHIHEFGDAT----NGCV----SAGPHFNP-FKKTHGAPTDEVRHVGD 84
E+A +P GFHIH+ G +G V +AG H++P HG P + H GD
Sbjct: 33 ELADLTPGM-HGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHGFPWTDDNHKGD 91
Query: 85 MGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPR 144
+ + NG+A + L + G +++IHAG D+ D ++L G G R
Sbjct: 92 LPALFVSANGLATNPVLAPRLTL---KELKGHAIMIHAGGDN--HSDMPKAL--GGGGAR 144
Query: 145 PACGVI 150
ACGVI
Sbjct: 145 VACGVI 150
>2WWN-A nrPDB
Length = 169
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 44 RGFHIHEFGDATNG--------CVSAGPHFNPFKK-THGAPTDEVRHVGDMGNVKTDENG 94
GFH+HE G ++AG H +P K H P ++ H+GD+ + + +G
Sbjct: 59 HGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADG 118
Query: 95 VAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
A +K + + V +++IHAG D+ ++ + G G R ACGVI
Sbjct: 119 TATYPVLAPRLKSL--SEVKQHALMIHAGGDNY----SDHPMPLGGGGARMACGVI 168
>4L05-A nrPDB
Length = 154
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 44 RGFHIHEFGDATNG--------CVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENG- 94
GFH+HE G ++AG H++P H + H+GD+ + + +G
Sbjct: 45 HGFHVHENPSCAPGEKDGKIVPALAAGGHYDPGNTHHHLGPEGDGHMGDLPRLSANADGK 104
Query: 95 VAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
V++ L KL + RS+++H G D+ D E L G G R ACGVI
Sbjct: 105 VSETVVAPHLKKL---AEIKQRSLMVHVGGDNY--SDKPEPL--GGGGARFACGVI 153
>1PZS-A nrPDB
Length = 208
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 30/159 (18%)
Query: 17 VVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGD-----------ATNGCVSAGPHF 65
KFE A+ T++ G G HIH+ G A +SAG H+
Sbjct: 54 TAKFEFANGYATVTIATTGVGKLTPGFHGLHIHQVGKCEPNSVAPTGGAPGNFLSAGGHY 113
Query: 66 NPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQD 125
+ T G P GD+ +++ +G A + S +++IHAG D
Sbjct: 114 HVPGHT-GTPAS-----GDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIIIHAGAD 167
Query: 126 DLGK-------------GDTEESLKTGNAGPRPACGVIG 151
+ G E +L TG+AG R ACGVIG
Sbjct: 168 NFANIPPERYVQVNGTPGPDETTLTTGDAGKRVACGVIG 206
>1ESO-A nrPDB
Length = 154
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 40 PNAERGFHIHEFGDA--------TNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTD 91
P E GFHIH G + SAG H +P + H+GD+ + +
Sbjct: 41 PPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHEGPEGAGHLGDLPALVVN 100
Query: 92 ENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
+G A + +K + + +++++H G D++ +++ G G R ACGVI
Sbjct: 101 NDGKATDAVIAPRLKSL--DEIKDKALMVHVGGDNM----SDQPKPLGGGGERYACGVI 153
>2K4W-A nrPDB
Length = 154
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 40 PNAERGFHIHEFGDATN--------GCVSAGPHFNPFKK-THGAPTDEVRHVGDMGNVKT 90
P E GFHIH G +AG H +P H P + H+GD+ +
Sbjct: 41 PPGEHGFHIHANGSCQPAIKDGQAVAAEAAGGHLDPQNTGKHEGPEGQ-GHLGDLPVLVV 99
Query: 91 DENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
+ +G+A +K + V ++++IH G D++ +++ G G R ACGVI
Sbjct: 100 NNDGIATEPVTAPRLKSL--DEVKDKALMIHVGGDNM----SDQPKPLGGGGTRYACGVI 153
>4N3U-A nrPDB
Length = 159
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 12 AGVSGVVKFEQASESEPTTVSYEIAG-NSPNAERGFHIHEFG-DATNGCVSAGPHFNPFK 69
+ + G +KF A+ +VS ++ G S +H+HE A+ C + HFNP+
Sbjct: 18 SNIEGTIKFTPANNGT-VSVSVDLKGLPSDIGPFPYHVHEKPVPASKNCSATENHFNPYN 76
Query: 70 KTHGAPTDEVRHVGDM----GNVKTDENGVAKGSFKDSLIKL--IGPTSVVGRSVVIHAG 123
T A T VGD+ GN+ + K + DS I L + + G S+VIHA
Sbjct: 77 GTVRAATPAAHEVGDLAGKHGNIMGES---YKTEYDDSYISLNEKSRSYIGGLSIVIHAN 133
Query: 124 Q 124
Sbjct: 134 N 134
>5VA1-A nrPDB
Length = 795
Score = 35.0 bits (79), Expect = 0.013, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 47 HIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----D 102
H F AT GC+ A FK TH P D + H GD+ T +++GS + D
Sbjct: 499 HCKPFRGATKGCLRALAM--KFKTTHAPPGDTLVHAGDL---LTALYFISRGSIEILRGD 553
Query: 103 SLIKLIGPTSVVGRSVVIHA 122
++ ++G + G + ++A
Sbjct: 554 VVVAILGKNDIFGEPLNLYA 573
>2XIK-A nrPDB
Length = 294
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 3 QAVAVLKGDAGVSGVVKFEQA------SESEPTTVSYEIAGNSPNAERGFHIHEFGDATN 56
Q+ K D G+ E A S+ P V + I NSP G H F +
Sbjct: 190 QSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGQHSKPFKEFVE 249
Query: 57 GCVSAGPHFNP 67
C++ P F P
Sbjct: 250 ACLNKDPRFRP 260
>2N7G-A nrPDB
Length = 154
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 47 HIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----D 102
H F AT GC+ A FK TH P D + H GD+ T +++GS + D
Sbjct: 29 HCKPFRGATKGCLRALA--MKFKTTHAPPGDTLVHAGDL---LTALYFISRGSIEILRGD 83
Query: 103 SLIKLIGPTSVVGRSVVIHA 122
++ ++G + G + ++A
Sbjct: 84 VVVAILGKNDIFGEPLNLYA 103
>4L11-A nrPDB
Length = 204
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 51 FGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----DSLIK 106
F A+ GC+ A FK TH P D + H GD V T +A+GS + D ++
Sbjct: 80 FEAASPGCLRALS--LKFKTTHAPPGDILVHKGD---VLTYLYFIARGSIEILKDDVVMA 134
Query: 107 LIGPTSVVGRSVVIHAGQDDLGKGDT 132
++G + G + IH+ LGK ++
Sbjct: 135 ILGKDDIFGENPCIHST---LGKSNS 157
>5EGN-A nrPDB
Length = 271
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 37 GNSPNAERGF---HIHEFGDATNGCVSAG-----PHFNPFKKTH-GAPTDEVRHVGDMGN 87
G P A F +I FG G VSA P K H P++ +HV D
Sbjct: 125 GMPPEAGAAFQNDYIGAFGGLLEGAVSARSKRERPEILAVMKAHFSVPSNFPKHVFDAAT 184
Query: 88 VKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDL 127
D NGV + KD L + PT VV AG++DL
Sbjct: 185 --ADPNGVFAWNIKDRLSSIQAPTLVV-------AGEEDL 215
>4FZF-B nrPDB
Length = 283
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 9 KGDAGVSGVVKFEQA------SESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
K D G+ E A S+ P V + I N+P G F + + C++
Sbjct: 185 KADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLVGDFTKSFKEFIDACLNKD 244
Query: 63 PHFNP 67
P F P
Sbjct: 245 PSFRP 249
>4BIN-A nrPDB
Length = 403
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 79 VRHVGDMG-NVKTDENGVAK-GSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESL 136
VR V ++ NVK +A FK+ L+ + P + + A +D KGD E+ +
Sbjct: 97 VRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLEDYNKGDLEKQV 156
Query: 137 KTGNAGPRP 145
+GP+P
Sbjct: 157 PPAQSGPQP 165
>2XS2-A nrPDB
Length = 102
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 88 VKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPAC 147
+ TD GV+KG S + +V + H + LG +++L T + PRP
Sbjct: 41 IITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLSTYHVQPRPLI 100
>6ADQ-Y nrPDB
Length = 236
Score = 25.4 bits (54), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 130 GDTEESLKTGNAGPRPACGVI 150
G + ++ TG+AG R ACGVI
Sbjct: 213 GPDQTTMATGDAGSRVACGVI 233
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5YTU-A nrPDB 217 1e-57
1F1A-A nrPDB 213 2e-56
3ECW-A nrPDB 209 5e-55
3LTV-A nrPDB 206 3e-54
3CE1-A nrPDB 201 7e-53
4RVP-A nrPDB 194 2e-50
3HW7-A nrPDB 194 2e-50
1SRD-A nrPDB 190 1e-49
3F7K-A nrPDB 188 9e-49
1TO4-A nrPDB 188 9e-49
3KM2-A nrPDB 187 2e-48
4OJA-A nrPDB 184 1e-47
3L9Y-A nrPDB 184 1e-47
3MND-A nrPDB 182 5e-47
3KBF-A nrPDB 182 7e-47
6FON-A nrPDB 180 2e-46
5IN2-A nrPDB 180 2e-46
1XSO-A nrPDB 179 4e-46
2Q2L-A nrPDB 179 6e-46
2E47-A nrPDB 171 1e-43
2MP3-A nrPDB 169 3e-43
6FOL-A nrPDB 169 7e-43
4U4I-A nrPDB 161 1e-40
2JLP-A nrPDB 153 3e-38
6FLH-A nrPDB 122 5e-29
1U3N-A nrPDB 109 5e-25
2APS-A nrPDB 109 6e-25
1Z9N-A nrPDB 107 2e-24
1Z9P-A nrPDB 107 2e-24
2WWN-A nrPDB 106 4e-24
4XCR-A nrPDB 105 6e-24
1YAI-A nrPDB 105 8e-24
2AQS-A nrPDB 103 2e-23
1PZS-A nrPDB 102 5e-23
4L05-A nrPDB 102 9e-23
5J0G-A nrPDB 97 3e-21
5J07-A nrPDB 91 1e-19
5J0C-A nrPDB 75 1e-14
5J0F-A nrPDB 66 5e-12
Sequences not found previously or not previously below threshold:
1EQW-A nrPDB 99 6e-22
1ESO-A nrPDB 90 4e-19
6ADQ-Y nrPDB 89 8e-19
2K4W-A nrPDB 88 2e-18
4N3U-A nrPDB 55 1e-08
5U9M-B nrPDB 41 2e-04
1QUP-A nrPDB 41 2e-04
1EJ8-A nrPDB 41 2e-04
5VA1-A nrPDB 32 0.16
2N7G-A nrPDB 32 0.16
4L11-A nrPDB 30 0.40
3DMN-A nrPDB 30 0.52
4IWS-A nrPDB 29 0.76
3GLV-A nrPDB 28 1.3
1ZVU-A nrPDB 28 1.9
2FLH-A nrPDB 27 2.5
4Q0K-A nrPDB 27 2.6
2ZGQ-A nrPDB 27 2.7
1ZVT-A nrPDB 27 3.8
1W55-A nrPDB 27 4.2
5NQ7-A nrPDB 27 5.1
2XIK-A nrPDB 26 6.2
3JCS-L nrPDB 26 7.3
>5YTU-A nrPDB
Length = 180
Score = 217 bits (553), Expect = 1e-57, Method: Composition-based stats.
Identities = 84/152 (55%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VLKGD V G++ FEQ + P V I G + GFH+HEFGD T GC SAG
Sbjct: 30 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLT-EGLHGFHVHEFGDNTAGCTSAG 88
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP + HG P DE RHVGD+GNV D++GVA S +DS+I L G ++GR++V+H
Sbjct: 89 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHE 148
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
DDLGKG EES KTGNAG R ACGVIG+
Sbjct: 149 KADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 180
>1F1A-A nrPDB
Length = 154
Score = 213 bits (542), Expect = 2e-56, Method: Composition-based stats.
Identities = 153/154 (99%), Positives = 153/154 (99%)
Query: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVS 60
MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHI EFGDATNGCVS
Sbjct: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIQEFGDATNGCVS 60
Query: 61 AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI 120
AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI
Sbjct: 61 AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI 120
Query: 121 HAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
HAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN
Sbjct: 121 HAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
>3ECW-A nrPDB
Length = 153
Score = 209 bits (531), Expect = 5e-55, Method: Composition-based stats.
Identities = 83/152 (54%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VLKGD V G++ FEQ + P V I G + GFH+HEFGD GC SAG
Sbjct: 3 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLT-EGLHGFHVHEFGDNRAGCTSAG 61
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP + HG P DE RHVGD+GNV D++GVA S +DS+I L G ++GR++V+H
Sbjct: 62 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHE 121
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
DDLGKG EES KTGNAG R ACGVIG+
Sbjct: 122 KADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 153
>3LTV-A nrPDB
Length = 153
Score = 206 bits (525), Expect = 3e-54, Method: Composition-based stats.
Identities = 84/153 (54%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
++AV VLKGD V G + FEQ + EP +S +I G + + GFH+H++GD T GC SA
Sbjct: 2 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLT-EGQHGFHVHQYGDNTQGCTSA 60
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
GPHFNP K HG P DE RHVGD+GNV D++GVA S +DS+I L G ++GR++V+H
Sbjct: 61 GPHFNPHSKKHGGPADEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVH 120
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
DDLGKG EES KTGNAG R ACGVIG+
Sbjct: 121 EKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 153
>3CE1-A nrPDB
Length = 168
Score = 201 bits (512), Expect = 7e-53, Method: Composition-based stats.
Identities = 95/151 (62%), Positives = 114/151 (75%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
++A+AVLKGD+ V GV+ F Q S P TVS EI NA+RGFH+H+FGD +NGC SA
Sbjct: 5 IKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANAQRGFHVHQFGDNSNGCTSA 64
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
GPHFNP HG T EVRHVGD+GNVKTD +GVAK DS + L+GP S++GR++VIH
Sbjct: 65 GPHFNPTGTNHGDRTAEVRHVGDLGNVKTDASGVAKVQISDSQLSLVGPHSIIGRTIVIH 124
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
AG+DDLGK D ESLKTGNAG R ACGVIG+
Sbjct: 125 AGEDDLGKTDHPESLKTGNAGARSACGVIGI 155
>4RVP-A nrPDB
Length = 158
Score = 194 bits (493), Expect = 2e-50, Method: Composition-based stats.
Identities = 88/151 (58%), Positives = 108/151 (71%), Gaps = 2/151 (1%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKG++ V GVV Q + PTTV+ I G +P GFH+HEFGD TNGC+S G
Sbjct: 8 KAVAVLKGNSAVEGVVTLTQEEDG-PTTVNVRITGLTP-GPHGFHLHEFGDTTNGCISTG 65
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP THGAP DE+RH GD+GN+ + +GVA+ + D+ I L GP +VVGR+ V+H
Sbjct: 66 PHFNPKGLTHGAPEDEIRHAGDLGNIVANADGVAEVTIVDNQIPLTGPNAVVGRAFVVHE 125
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLGKG E SL TGNAG R ACGVIGLT
Sbjct: 126 LEDDLGKGGHELSLSTGNAGGRLACGVIGLT 156
>3HW7-A nrPDB
Length = 151
Score = 194 bits (492), Expect = 2e-50, Method: Composition-based stats.
Identities = 82/152 (53%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VLKGD V G + FE ++ + V+ I G + + GFH+H+FGD T GC SAG
Sbjct: 3 KAVCVLKGDGPVQGTIHFE--AKGDTVVVTGSITGLT-EGDHGFHVHQFGDNTQGCTSAG 59
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP K HG P DE RHVGD+GNV D+NGVA D LI L G S++GR++V+H
Sbjct: 60 PHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHE 119
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
DDLG+G EES KTGNAG R ACGVIG+
Sbjct: 120 KPDDLGRGGNEESTKTGNAGSRLACGVIGIAK 151
>1SRD-A nrPDB
Length = 154
Score = 190 bits (484), Expect = 1e-49, Method: Composition-based stats.
Identities = 90/151 (59%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKG + V GVV Q + PTTV+ I+G +P + GFH+HEFGD TNGC+S G
Sbjct: 4 KAVAVLKGTSNVEGVVTLTQEDDG-PTTVNVRISGLAP-GKHGFHLHEFGDTTNGCMSTG 61
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP KKTHGAP DEVRH GD+GN+ + +GVA+ + D+ I L GP SVVGR++V+H
Sbjct: 62 PHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHE 121
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLGKG E S TGNAG R ACGV+GLT
Sbjct: 122 LEDDLGKGGHELSPTTGNAGGRLACGVVGLT 152
>3F7K-A nrPDB
Length = 152
Score = 188 bits (477), Expect = 9e-49, Method: Composition-based stats.
Identities = 85/153 (55%), Positives = 106/153 (69%), Gaps = 3/153 (1%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
+ AV VLKGD+ V+G + E + TV+ EI G +P + GFH+HEFGD TNGC SA
Sbjct: 2 IHAVCVLKGDSPVTGTIHL--KEEGDMVTVTGEITGLTP-GKHGFHVHEFGDNTNGCTSA 58
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
G HFNP K HGAP DE RH GD+GNV E+G A + KD L+KL GP SV+GR++V+H
Sbjct: 59 GGHFNPHGKEHGAPEDENRHAGDLGNVVAGEDGKAVINMKDKLVKLTGPDSVIGRTLVVH 118
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
+DDLG+G E+S TGNAG R ACGVIG+T
Sbjct: 119 VDEDDLGRGGHEQSKITGNAGGRLACGVIGITK 151
>1TO4-A nrPDB
Length = 156
Score = 188 bits (477), Expect = 9e-49, Method: Composition-based stats.
Identities = 83/152 (54%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
++AV V+ G AGV GVVKF Q +++ P V E +G + GFH+HEFGD TNGC SA
Sbjct: 4 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKA-GKHGFHVHEFGDTTNGCTSA 62
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
G HFNP K+ HGAP D +RHVGD+GNV +G A + D LI L G S++GRS+VIH
Sbjct: 63 GAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIH 122
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLG+G E S TGNAG R ACGV+GL
Sbjct: 123 ENEDDLGRGGHELSKVTGNAGGRLACGVVGLA 154
>3KM2-A nrPDB
Length = 154
Score = 187 bits (474), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/151 (57%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKG++ V GVV Q + PTTV+ I G +P GFH+HE+GD TNGC+S G
Sbjct: 4 KAVAVLKGNSNVEGVVTLSQ-DDDGPTTVNVRITGLAPGL-HGFHLHEYGDTTNGCMSTG 61
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
HFNP K THGAP DE+RH GD+GN+ + +GVA+ + D+ I L GP SVVGR++V+H
Sbjct: 62 AHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHE 121
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLGKG E SL TGNAG R ACGV+GLT
Sbjct: 122 LEDDLGKGGHELSLTTGNAGGRLACGVVGLT 152
>4OJA-A nrPDB
Length = 170
Score = 184 bits (468), Expect = 1e-47, Method: Composition-based stats.
Identities = 77/152 (50%), Positives = 102/152 (67%), Gaps = 3/152 (1%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
+ A+ VL+G V G +KFE + T VS +I G P + GFHIH+FGD + GC+S
Sbjct: 21 MSAICVLEGI--VKGTIKFEDIGDG-KTHVSGKITGLQPPGKHGFHIHQFGDYSGGCMST 77
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
GPHFNPF K HG P DE RH GD+GN+ +D+ G A + +DS I L GP S++GR++V+H
Sbjct: 78 GPHFNPFNKEHGGPEDENRHAGDLGNIVSDDYGNADVNIEDSQIPLDGPNSIIGRALVVH 137
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
+DDLG G ++S TGNAG R +CGVIGL
Sbjct: 138 QNEDDLGLGGHKDSKTTGNAGARLSCGVIGLA 169
>3L9Y-A nrPDB
Length = 154
Score = 184 bits (468), Expect = 1e-47, Method: Composition-based stats.
Identities = 86/154 (55%), Positives = 105/154 (68%), Gaps = 4/154 (2%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
+AV VL+GD VSG V F+Q E P VS E+ G + + GFH+HEFGD TNGC SA
Sbjct: 3 AKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLT-KGKHGFHVHEFGDNTNGCTSA 59
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDEN-GVAKGSFKDSLIKLIGPTSVVGRSVVI 120
G HFNP K+ HG P+ VRHVGD+GN++ E+ GV K S +DS I L GP S++GR++V+
Sbjct: 60 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVV 119
Query: 121 HAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
HA DDLG G E S TGNAG R ACGVIGL
Sbjct: 120 HADPDDLGLGGNELSKTTGNAGGRIACGVIGLAK 153
>3MND-A nrPDB
Length = 152
Score = 182 bits (462), Expect = 5e-47, Method: Composition-based stats.
Identities = 80/153 (52%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
++AV V++G+ GV GVV F QA + V E G P + GFH+HEFGD T GC SA
Sbjct: 1 MKAVCVMRGEEGVKGVVHFTQA--GDAVKVHAEFEGLKP-GKHGFHVHEFGDTTQGCTSA 57
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
G HFNP K HGAP RHVGD+GNV +G A D +I L G SV+GRS+VIH
Sbjct: 58 GAHFNPHGKNHGAPDAAERHVGDLGNVTAGADGKATLDLTDKMISLTGEHSVIGRSLVIH 117
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
DDLG G E SL TGNAG R ACG+IG+
Sbjct: 118 VDPDDLGLGGHELSLITGNAGGRVACGIIGIAK 150
>3KBF-A nrPDB
Length = 157
Score = 182 bits (461), Expect = 7e-47, Method: Composition-based stats.
Identities = 88/154 (57%), Positives = 112/154 (72%), Gaps = 5/154 (3%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVL+G+ V+G + Q SE++ + EI G +P GFH+H++GD+TNGC+SAG
Sbjct: 3 RAVAVLRGET-VTGTIWITQKSENDQAVIEGEIKGLTPGL-HGFHVHQYGDSTNGCISAG 60
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNPF KTHG P E+RHVGD+GNV+ +GVAK D+L+ L GP +VVGRS+V+HA
Sbjct: 61 PHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHA 120
Query: 123 GQDDLGKG---DTEESLKTGNAGPRPACGVIGLT 153
GQDDLG+G EES KTGNAG R ACGVI L
Sbjct: 121 GQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 154
>6FON-A nrPDB
Length = 252
Score = 180 bits (458), Expect = 2e-46, Method: Composition-based stats.
Identities = 66/148 (44%), Positives = 87/148 (58%), Gaps = 5/148 (3%)
Query: 4 AVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGP 63
AVA+L G V GVV+F Q + E + I G P G H+H++GD TN C S G
Sbjct: 82 AVAILGGPGTVQGVVRFLQLTP-ERCLIEGTIDGLEPGL-HGLHVHQYGDLTNNCNSCGN 139
Query: 64 HFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAG 123
HFNP +HG P D RH GD+GNV+ D +G A +D +K+ V+GRS++I G
Sbjct: 140 HFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEG 196
Query: 124 QDDLGKGDTEESLKTGNAGPRPACGVIG 151
+DDLG+G S TGN+G R ACG+I
Sbjct: 197 EDDLGRGGHPLSKITGNSGERLACGIIA 224
>5IN2-A nrPDB
Length = 158
Score = 180 bits (457), Expect = 2e-46, Method: Composition-based stats.
Identities = 86/154 (55%), Positives = 110/154 (71%), Gaps = 4/154 (2%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVL+GDAGVSG++ F+Q S TT+S ++G +P GFH+H++GD TNGC SAG
Sbjct: 3 RAVAVLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGL-HGFHVHQYGDQTNGCTSAG 61
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
H+NPF KTHG P D ++H+GD+GN+ NGVA+ IKL GP SV+G S+V+HA
Sbjct: 62 DHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHA 121
Query: 123 GQDDLGKGD---TEESLKTGNAGPRPACGVIGLT 153
DDLG+G EESLKTGNAG R ACGVIG+
Sbjct: 122 NTDDLGQGTGNMREESLKTGNAGSRLACGVIGIA 155
>1XSO-A nrPDB
Length = 150
Score = 179 bits (455), Expect = 4e-46, Method: Composition-based stats.
Identities = 88/152 (57%), Positives = 102/152 (67%), Gaps = 3/152 (1%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
V+AV VL G V GVV FEQ E +V +I G + + GFHIH FGD TNGC+SA
Sbjct: 1 VKAVCVLAGSGDVKGVVHFEQQDEGA-VSVEGKIEGLT-DGLHGFHIHVFGDNTNGCMSA 58
Query: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
G HFNP K HGAP D RHVGD+GNV E GVA+ DSLI L GP S++GR+ V+H
Sbjct: 59 GSHFNPENKNHGAPGDTDRHVGDLGNVTA-EGGVAQFKITDSLISLKGPNSIIGRTAVVH 117
Query: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
DDLGKG +ESLKTGNAG R ACGVIG +
Sbjct: 118 EKADDLGKGGNDESLKTGNAGGRLACGVIGYS 149
>2Q2L-A nrPDB
Length = 152
Score = 179 bits (453), Expect = 6e-46, Method: Composition-based stats.
Identities = 80/152 (52%), Positives = 99/152 (65%), Gaps = 2/152 (1%)
Query: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVS 60
M + VAVL GV+G + F Q + PTTV+ I+G P GFH+H GD TNGC+S
Sbjct: 1 MAKGVAVLSSSEGVAGTILFTQEGDG-PTTVTGNISGLKPGL-HGFHVHALGDTTNGCMS 58
Query: 61 AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI 120
GPHFNP K HG+P DE RH GD+GN+ ++G A + D I L GP S++GR+VV+
Sbjct: 59 TGPHFNPAGKEHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVV 118
Query: 121 HAGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152
HA DDLGKG E S TGNAG R ACG+IGL
Sbjct: 119 HADPDDLGKGGHELSKSTGNAGGRIACGIIGL 150
>2E47-A nrPDB
Length = 156
Score = 171 bits (433), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/151 (47%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+A+AVL + + G + F Q + V I G P E GFH+HE GD + GC+S G
Sbjct: 9 RAIAVLSTET-IRGNITFTQVQDG-KVHVQGGITGL-PPGEYGFHVHEKGDLSGGCLSTG 65
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
HFNP K HG P D RHVGD+GNV DEN ++ D I L GP ++GR+VV+H
Sbjct: 66 SHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHE 125
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
DD GK D +S KTGNAG R ACGVIG+
Sbjct: 126 KADDYGKSDHPDSRKTGNAGGRVACGVIGIL 156
>2MP3-A nrPDB
Length = 132
Score = 169 bits (429), Expect = 3e-43, Method: Composition-based stats.
Identities = 64/124 (51%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AV VLKGD V G++ FEQ + P V I G + GFH+HEFGD T GC SAG
Sbjct: 10 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLT-EGLHGFHVHEFGDNTAGCTSAG 68
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
PHFNP + HG P DE RHVGD+GNV D++GVA S +DS+I L G ++GR++V+H
Sbjct: 69 PHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHE 128
Query: 123 GQDD 126
DD
Sbjct: 129 KADD 132
>6FOL-A nrPDB
Length = 150
Score = 169 bits (427), Expect = 7e-43, Method: Composition-based stats.
Identities = 66/148 (44%), Positives = 87/148 (58%), Gaps = 5/148 (3%)
Query: 4 AVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGP 63
AVA+L G V GVV+F Q + E + I G P G H+H++GD TN C S G
Sbjct: 7 AVAILGGPGTVQGVVRFLQLTP-ERCLIEGTIDGLEPGL-HGLHVHQYGDLTNNCNSCGN 64
Query: 64 HFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAG 123
HFNP +HG P D RH GD+GNV+ D +G A +D +K+ V+GRS++I G
Sbjct: 65 HFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEG 121
Query: 124 QDDLGKGDTEESLKTGNAGPRPACGVIG 151
+DDLG+G S TGN+G R ACG+I
Sbjct: 122 EDDLGRGGHPLSKITGNSGERLACGIIA 149
>4U4I-A nrPDB
Length = 161
Score = 161 bits (407), Expect = 1e-40, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVS 60
+V A+ L G F Q + T + + + P + G HIH+ GD NGC S
Sbjct: 12 VVTAICQLDKPHDY-GYAIFTQLPDC--TEIQFHLKNL-PPGKHGCHIHKSGDRRNGCTS 67
Query: 61 AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVI 120
GPHFNPF H + H+GD+GN+ + NG + L G ++GR +VI
Sbjct: 68 MGPHFNPFNGVHKDINIQHNHLGDLGNIVVNNNGECNEIICVKYLPLTGSNQIIGRGLVI 127
Query: 121 HAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
H +DDLG + +S TGN+G R ACG+I N
Sbjct: 128 HEKEDDLGMTNHPDSKTTGNSGDRIACGIIAYLN 161
>2JLP-A nrPDB
Length = 222
Score = 153 bits (387), Expect = 3e-38, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 14 VSGVVKFEQASESEPTTVSYEIAGNSPN---AERGFHIHEFGDATNGCVSAGPHFNPFKK 70
V+GVV F Q + + + G + R H+H+FGD + GC S GPH+NP
Sbjct: 60 VTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAV 119
Query: 71 THGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKG 130
H +H GD GN + + + L GP S+VGR+VV+HAG+DDLG+G
Sbjct: 120 PH------PQHPGDFGNFAVRDGSLWRYR-AGLAASLAGPHSIVGRAVVVHAGEDDLGRG 172
Query: 131 DTEESLKTGNAGPRPACGVIGLT 153
+ S++ GNAG R AC V+G+
Sbjct: 173 GNQASVENGNAGRRLACCVVGVC 195
>6FLH-A nrPDB
Length = 118
Score = 122 bits (307), Expect = 5e-29, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 76/152 (50%), Gaps = 36/152 (23%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKGD V G++ FEQ + P V I G + GFH+HE G
Sbjct: 3 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLT-EGLHGFHVHEEG---------- 51
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
HVGD+GNV D++GVA S +DS+I L G S++GR++V+H
Sbjct: 52 ----------------AGHVGDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVHE 95
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
DD G G GNAG R A GVIG+
Sbjct: 96 KADD-GAG--------GNAGSRLASGVIGIAQ 118
>1U3N-A nrPDB
Length = 162
Score = 109 bits (272), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 18 VKFEQASESEPTTVSYEIAGNS--PNAERGFHIHEFGDA-TNGCVSAGPHFNPFKKTHGA 74
V F + ES+ + I+ NS P A GFHI+E G SAG FNP K HG
Sbjct: 21 VGFIEIKESDDEGLDIHISANSLRPGASLGFHIYEKGSCVRPDFESAGGPFNPLNKEHGF 80
Query: 75 PTDEVRHVGDMGNVKTDENGVAKGSFK--DSLIKLIGPTSVV---GRSVVIHAGQDDLGK 129
H GD+ N++ +G D+ +K +++ G + +IH DD
Sbjct: 81 NNPMGHHAGDLPNLEVGADGKVDVIMNAPDTSLKKGSKLNILDEDGSAFIIHEQADDY-- 138
Query: 130 GDTEESLKTGNAGPRPACGVI 150
+ +GN+G R CG +
Sbjct: 139 ----LTNPSGNSGARIVCGAL 155
>2APS-A nrPDB
Length = 162
Score = 109 bits (272), Expect = 6e-25, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 19/152 (12%)
Query: 8 LKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATN--------GCV 59
+KG+ V G V+ +++ + + G GFHIH+ +
Sbjct: 20 VKGNKDV-GTVEITESAYG--LVFTPHLHGL-AQGLHGFHIHQNPSCEPKEKDGKLVAGL 75
Query: 60 SAGPHFNPF-KKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSV 118
AG H++P K HG P + H+GD+ + + +G A +K + V G S+
Sbjct: 76 GAGGHWDPKETKQHGYPWSDNAHLGDLPALFVEHDGSATNPVLAPRLKKLD--EVKGHSL 133
Query: 119 VIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
+IH G D+ ++ G GPR ACGVI
Sbjct: 134 MIHEGGDN----HSDHPAPLGGGGPRMACGVI 161
>1Z9N-A nrPDB
Length = 177
Score = 107 bits (267), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 42 AERGFHIHEFGDATN--------GCVSAGPHFNPFK-KTHGAPTDEVRHVGDMGNVKTDE 92
GFHIHE + AG H++P + + HG P + H+GD+ +
Sbjct: 65 GLHGFHIHEKPSCEPKEKDGKLVAGLGAGGHWDPKQTQKHGYPWSDDAHMGDLPALFVMH 124
Query: 93 NGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
+G A +K + V G S++IHAG D+ ++ G GPR ACGVI
Sbjct: 125 DGSATTPVLAPRLKKL--AEVKGHSLMIHAGGDN----HSDHPAPLGGGGPRMACGVI 176
>1Z9P-A nrPDB
Length = 155
Score = 107 bits (266), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 42 AERGFHIHEFGDATN--------GCVSAGPHFNPFK-KTHGAPTDEVRHVGDMGNVKTDE 92
GFHIHE + AG H++P + + HG P + H+GD+ +
Sbjct: 43 GLHGFHIHEKPSCEPKEKDGKLVAGLGAGGHWDPKQTQKHGYPWSDDAHMGDLPALFVMH 102
Query: 93 NGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
+G A +K + V G S++IHAG D+ ++ G GPR ACGVI
Sbjct: 103 DGSATTPVLAPRLKKL--AEVKGHSLMIHAGGDN----HSDHPAPLGGGGPRMACGVI 154
>2WWN-A nrPDB
Length = 169
Score = 106 bits (265), Expect = 4e-24, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 9 KGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNG--------CVS 60
+G+ G V + + + + G +P GFH+HE G ++
Sbjct: 27 QGNGKALGTVTVTETAYG--LLFTPHLTGLAP-GIHGFHLHEKPSCAPGMKDGKAVPALA 83
Query: 61 AGPHFNPFKK-THGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVV 119
AG H +P K H P ++ H+GD+ + + +G A +K + V +++
Sbjct: 84 AGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLK--SLSEVKQHALM 141
Query: 120 IHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
IHAG D+ ++ + G G R ACGVI
Sbjct: 142 IHAGGDNY----SDHPMPLGGGGARMACGVI 168
>4XCR-A nrPDB
Length = 110
Score = 105 bits (263), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 66/152 (43%), Gaps = 44/152 (28%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKGD V G++ FEQ + P V G + GFH+H G
Sbjct: 3 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSAKGLT-EGLHGFHVHGAG---------- 51
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
GD+GNV D++GVA S +DS+I L G S++GR++V+H
Sbjct: 52 --------------------GDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVHE 91
Query: 123 GQDDLGKGDTEESLKTGNAGPRPACGVIGLTN 154
AG R A GVIG+
Sbjct: 92 KA-------------GAGAGSRLASGVIGIAQ 110
>1YAI-A nrPDB
Length = 151
Score = 105 bits (262), Expect = 8e-24, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 16 GVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCV--------SAGPHFNP 67
G ++ Q + E+A +P GFHIH+ G + +AG H++P
Sbjct: 17 GTIELSQNKYG--VVFTPELADLTPGM-HGFHIHQNGSCASSEKDGKVVLGGAAGGHYDP 73
Query: 68 FKK-THGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDD 126
HG P + H GD+ + NG+A + L + G +++IHAG D+
Sbjct: 74 EHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLK---ELKGHAIMIHAGGDN 130
Query: 127 LGKGDTEESLKTGNAGPRPACGVI 150
++ G G R ACGVI
Sbjct: 131 ----HSDMPKALGGGGARVACGVI 150
>2AQS-A nrPDB
Length = 164
Score = 103 bits (258), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 16 GVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATN--------GCVSAGPHFNP 67
G V +++ + ++ G S GFHIHE + AG H++P
Sbjct: 29 GTVTITESNYG--LVFTPDLQGLS-EGLHGFHIHENPSCEPKEEEGELTAGLGAGGHWDP 85
Query: 68 FK-KTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDD 126
K HG P + H+GD+ + +G A +K + V G S++IH G D+
Sbjct: 86 KGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLD--DVRGHSIMIHTGGDN 143
Query: 127 LGKGDTEESLKTGNAGPRPACGVI 150
++ G GPR ACGVI
Sbjct: 144 ----HSDHPAPLGGGGPRMACGVI 163
>1PZS-A nrPDB
Length = 208
Score = 102 bits (255), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 30/165 (18%)
Query: 11 DAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDA-----------TNGCV 59
D KFE A+ T++ G G HIH+ G +
Sbjct: 48 DGTKVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIHQVGKCEPNSVAPTGGAPGNFL 107
Query: 60 SAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVV 119
SAG H++ T G P GD+ +++ +G A + S +++
Sbjct: 108 SAGGHYHVPGHT-GTPAS-----GDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAII 161
Query: 120 IHAGQDDLGK-------------GDTEESLKTGNAGPRPACGVIG 151
IHAG D+ G E +L TG+AG R ACGVIG
Sbjct: 162 IHAGADNFANIPPERYVQVNGTPGPDETTLTTGDAGKRVACGVIG 206
>4L05-A nrPDB
Length = 154
Score = 102 bits (253), Expect = 9e-23, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 6 AVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNG-------- 57
A+ G G V +A V+ E GFH+HE G
Sbjct: 10 ALPTGPGKEVGTVVISEAPGGLHFKVNME---KLTPGYHGFHVHENPSCAPGEKDGKIVP 66
Query: 58 CVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRS 117
++AG H++P H + H+GD+ + + +G + +K + + RS
Sbjct: 67 ALAAGGHYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVAPHLKKL--AEIKQRS 124
Query: 118 VVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
+++H G D+ +++ G G R ACGVI
Sbjct: 125 LMVHVGGDNY----SDKPEPLGGGGARFACGVI 153
>1EQW-A nrPDB
Length = 156
Score = 99.3 bits (246), Expect = 6e-22, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 34 EIAGNSPNAERGFHIHEFGDATNG--------CVSAGPHFNPFKK-THGAPTDEVRHVGD 84
+ G +P GFH+H G + AG H +P K H P ++ H+GD
Sbjct: 36 HLNGLTP-GIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGD 94
Query: 85 MGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPR 144
+ + + +G A +K + + G S++IH G D+ +++ G G R
Sbjct: 95 LPGLVVNADGTATYPLLAPRLK--SLSELKGHSLMIHKGGDNY----SDKPAPLGGGGAR 148
Query: 145 PACGVI 150
ACGVI
Sbjct: 149 FACGVI 154
>5J0G-A nrPDB
Length = 113
Score = 96.6 bits (239), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 31/122 (25%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAG 62
+AVAVLKGD V G++ FEQ + P V I G + GFH+H G
Sbjct: 21 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLT-EGLHGFHVHGAG---------- 69
Query: 63 PHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHA 122
GD+GNV D++GVA S +DS+I L G S++GR++V+H
Sbjct: 70 --------------------GDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVHE 109
Query: 123 GQ 124
Sbjct: 110 KA 111
>5J07-A nrPDB
Length = 115
Score = 91.2 bits (225), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 44/143 (30%)
Query: 12 AGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKT 71
A V G++ FEQ + P V I G + GFH+H G
Sbjct: 1 APVQGIINFEQKESNGPVKVWGSIKGLT-EGLHGFHVHGAG------------------- 40
Query: 72 HGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGD 131
GD+GNV D++GVA S +DS+I L G S++GR++V+H
Sbjct: 41 -----------GDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVHEKA------- 82
Query: 132 TEESLKTGNAGPRPACGVIGLTN 154
AG R A GVIG+
Sbjct: 83 ------GAGAGSRLASGVIGIAQ 99
>1ESO-A nrPDB
Length = 154
Score = 89.7 bits (221), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 14/120 (11%)
Query: 39 SPNAERGFHIHEFGDA--------TNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKT 90
P E GFHIH G + SAG H +P + H+GD+ +
Sbjct: 40 LPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHEGPEGAGHLGDLPALVV 99
Query: 91 DENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
+ +G A + +K + +++++H G D++ +++ G G R ACGVI
Sbjct: 100 NNDGKATDAVIAPRLK--SLDEIKDKALMVHVGGDNM----SDQPKPLGGGGERYACGVI 153
>6ADQ-Y nrPDB
Length = 236
Score = 88.9 bits (219), Expect = 8e-19, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 51/164 (31%), Gaps = 30/164 (18%)
Query: 11 DAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDA-----------TNGCV 59
D F+ A T+ G G HIH G
Sbjct: 76 DGTSVATADFQFADGFATVTIETTTPGRLTPGFHGVHIHSVGKCEANSVAPTGGAPGDFN 135
Query: 60 SAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVV 119
SAG HF + G P GD+ +++ +G K +++
Sbjct: 136 SAGGHFQVSGHS-GHPAS-----GDLSSLQVRADGSGKLVTTTDAFTAEDLLDGAKTAII 189
Query: 120 IHAGQDDLGK-------------GDTEESLKTGNAGPRPACGVI 150
IH D+ G + ++ TG+AG R ACGVI
Sbjct: 190 IHEKADNFANIPPERYQQVNGAPGPDQTTMATGDAGSRVACGVI 233
>2K4W-A nrPDB
Length = 154
Score = 87.8 bits (216), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 39 SPNAERGFHIHEFGDATNG--------CVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKT 90
P E GFHIH G +AG H +P + H+GD+ +
Sbjct: 40 LPPGEHGFHIHANGSCQPAIKDGQAVAAEAAGGHLDPQNTGKHEGPEGQGHLGDLPVLVV 99
Query: 91 DENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVI 150
+ +G+A +K V ++++IH G D++ +++ G G R ACGVI
Sbjct: 100 NNDGIATEPVTAPRLK--SLDEVKDKALMIHVGGDNM----SDQPKPLGGGGTRYACGVI 153
>5J0C-A nrPDB
Length = 114
Score = 75.1 bits (183), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 44/128 (34%)
Query: 27 EPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMG 86
P V I G + GFH+H G GD+G
Sbjct: 2 APVKVWGSIKGLT-EGLHGFHVHGAG------------------------------GDLG 30
Query: 87 NVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPA 146
NV D++GVA S +DS+I L G S++GR++V+H AG R A
Sbjct: 31 NVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVHEKA-------------GAGAGSRLA 77
Query: 147 CGVIGLTN 154
GVIG+
Sbjct: 78 SGVIGIAQ 85
Score = 36.1 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASE 25
+AVAVLKGD V G++ FEQ
Sbjct: 92 KAVAVLKGDGPVQGIINFEQKES 114
>5J0F-A nrPDB
Length = 114
Score = 66.2 bits (160), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Query: 82 VGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNA 141
GD+GNV D++GVA S +DS+I L G S++GR++V+H A
Sbjct: 1 AGDLGNVTADKDGVADVSIEDSVISLSGDHSIIGRTLVVHEKA-------------GAGA 47
Query: 142 GPRPACGVIGLTN 154
G R A GVIG+
Sbjct: 48 GSRLASGVIGIAQ 60
Score = 59.3 bits (142), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 3 QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHE 50
+AVAVLKGD V G++ FEQ + P V I G + GFH+H
Sbjct: 67 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLT-EGLHGFHVHG 113
>4N3U-A nrPDB
Length = 159
Score = 55.0 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 12 AGVSGVVKFEQASESEPTTVSYEIAGNSPN-AERGFHIHEFG-DATNGCVSAGPHFNPFK 69
+ + G +KF A+ + +VS ++ G + +H+HE A+ C + HFNP+
Sbjct: 18 SNIEGTIKFTPAN-NGTVSVSVDLKGLPSDIGPFPYHVHEKPVPASKNCSATENHFNPYN 76
Query: 70 KTHGAPTDEVRHVGDMGNVKTDENGVA-KGSFKDSLIKLIGPTS--VVGRSVVIHAGQDD 126
T A T VGD+ + G + K + DS I L + + G S+VIHA
Sbjct: 77 GTVRAATPAAHEVGDLAGKHGNIMGESYKTEYDDSYISLNEKSRSYIGGLSIVIHA---- 132
Query: 127 LGKGDTEESLKTGNAGPRPACGVIGLTN 154
N G R C I L +
Sbjct: 133 -------------NNGTRLNCANITLLD 147
>5U9M-B nrPDB
Length = 248
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 3 QAVAVL----------KGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFG 52
AVA+L K D V G+ + Q E+ T + G IHE G
Sbjct: 78 SAVAILETFQKYTIDQKKDTAVRGLARIVQVGEN-KTLFDITVNGVPEAGNYHASIHEKG 136
Query: 53 DATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMG-NVKTDENGVAKGSFKDSLIKLIGPT 111
D + G S G ++ F + + D+G N+ + K L
Sbjct: 137 DVSKGVESTGKVWHKFDEPIECFNES-----DLGKNLYSG-----KTFLSAPLPT----W 182
Query: 112 SVVGRSVVI 120
++GRS VI
Sbjct: 183 QLIGRSFVI 191
>1QUP-A nrPDB
Length = 222
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 3 QAVAVL----------KGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFG 52
AVA+L K D V G+ + Q E+ T + G IHE G
Sbjct: 78 SAVAILETFQKYTIDQKKDTAVRGLARIVQVGEN-KTLFDITVNGVPEAGNYHASIHEKG 136
Query: 53 DATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMG-NVKTDENGVAKGSFKDSLIKLIGPT 111
D + G S G ++ F + + D+G N+ + K L
Sbjct: 137 DVSKGVESTGKVWHKFDEPIECFNES-----DLGKNLYSG-----KTFLSAPLPT----W 182
Query: 112 SVVGRSVVI 120
++GRS VI
Sbjct: 183 QLIGRSFVI 191
>1EJ8-A nrPDB
Length = 140
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 3 QAVAVL----------KGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFG 52
AVA+L K D V G+ + Q E+ T + G IHE G
Sbjct: 2 SAVAILETFQKYTIDQKKDTAVRGLARIVQVGEN-KTLFDITVNGVPEAGNYHASIHEKG 60
Query: 53 DATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMG-NVKTDENGVAKGSFKDSLIKLIGPT 111
D + G S G ++ F + + D+G N+ + K L
Sbjct: 61 DVSKGVESTGKVWHKFDEPIECFNES-----DLGKNLYSG-----KTFLSAPLPT----W 106
Query: 112 SVVGRSVVI 120
++GRS VI
Sbjct: 107 QLIGRSFVI 115
>5VA1-A nrPDB
Length = 795
Score = 31.5 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 47 HIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGD-MGNVKTDENGVAKGSFKDSLI 105
H F AT GC+ A FK TH P D + H GD + + G + D ++
Sbjct: 499 HCKPFRGATKGCLRALAM--KFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVV 556
Query: 106 KLIGPTSVVGRSVVIHAGQ 124
++G + G + ++A
Sbjct: 557 AILGKNDIFGEPLNLYARP 575
>2N7G-A nrPDB
Length = 154
Score = 31.5 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 47 HIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGD-MGNVKTDENGVAKGSFKDSLI 105
H F AT GC+ A FK TH P D + H GD + + G + D ++
Sbjct: 29 HCKPFRGATKGCLRALAM--KFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVV 86
Query: 106 KLIGPTSVVGRSVVIHAGQ 124
++G + G + ++A
Sbjct: 87 AILGKNDIFGEPLNLYARP 105
>4L11-A nrPDB
Length = 204
Score = 30.0 bits (66), Expect = 0.40, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 54 ATNGCVSAGPHFNPFKKTHGAPTDEVRHVGD-MGNVKTDENGVAKGSFKDSLIKLIGPTS 112
A+ GC+ A FK TH P D + H GD + + G + D ++ ++G
Sbjct: 83 ASPGCLRALSL--KFKTTHAPPGDILVHKGDVLTYLYFIARGSIEILKDDVVMAILGKDD 140
Query: 113 VVGRSVVIH 121
+ G + IH
Sbjct: 141 IFGENPCIH 149
>3DMN-A nrPDB
Length = 174
Score = 29.6 bits (65), Expect = 0.52, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 83 GDMGNVKTDENGVAKGSFKDSLIKLIGP----TSVVGRSVVIHAGQDDLGKGDTEESLKT 138
GD+ NV N A + + T+++G+S+ K E+
Sbjct: 32 GDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLI 91
Query: 139 GNAGPRPACGVI 150
R A GVI
Sbjct: 92 QTENQRLAPGVI 103
>4IWS-A nrPDB
Length = 518
Score = 29.2 bits (64), Expect = 0.76, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 12 AGVSGVVKFEQASE--SEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFK 69
V V + + P + +E G GFH+ + D + S G +
Sbjct: 139 GPVQENVWLGEQVDLTRFPVPLLHEQDGGRYFGTYGFHVVQTPDGSWDSWSVGRLMLVDR 198
Query: 70 KTHGAPTDEVRHVG 83
T PT +H+G
Sbjct: 199 NTLAGPTIPTQHIG 212
>3GLV-A nrPDB
Length = 143
Score = 28.4 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 61 AGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAK----GSFKD--SLIKLIGPTSVV 114
A F+ H E + +GD V + A+ D S + LI VV
Sbjct: 7 ATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVV 66
Query: 115 GRSVVIHAG 123
R+++ H G
Sbjct: 67 DRAILGHEG 75
>1ZVU-A nrPDB
Length = 716
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 91 DENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPR 144
E+G+A+ L IH G+ + E TG G R
Sbjct: 656 GEDGLAQLYVLPPQSTLT-----------IHVGKRKIKLRPEELQKVTGERGRR 698
>2FLH-A nrPDB
Length = 155
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAER-GFHIHEFGDATNG 57
+V+ V +++GD GV ++ F E P+ EI ++ G + E G + G
Sbjct: 37 IVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLSQG 94
>4Q0K-A nrPDB
Length = 162
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAER--GFHIHEFGDATNG 57
+V+ V V++GD GV + F P E+ G + E G G
Sbjct: 43 IVKDVQVIEGDGGVGTKLIFNFLPGIAPVNYQREVITEYDELSHTIGLQVVEGGYLNQG 101
>2ZGQ-A nrPDB
Length = 167
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 74 APTDEVRHVGDMGNVKTDENGVAKGSFKDS 103
P + V D+ N +G A + D
Sbjct: 79 GPWLVEQRVSDVANQFAGIDGKAMVTVFDH 108
>1ZVT-A nrPDB
Length = 256
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 91 DENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPR 144
E+G+A+ L IH G+ + E TG G R
Sbjct: 186 GEDGLAQLYVLPPQSTLT-----------IHVGKRKIKLRPEELQKVTGERGRR 228
>1W55-A nrPDB
Length = 371
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 21/98 (21%)
Query: 16 GVVKFEQASESE-PTTVSYEIAGNSPNAE-------RGFHIHEFGDATNGCVSAGPHFNP 67
G + F + E+ T ++ GF +HEFG+ + AG +P
Sbjct: 178 GKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDVHEFGENRP-LLLAGVQIHP 236
Query: 68 F-KKTHGAPTDEVRH-----------VGDMGNVKTDEN 93
+ D + H +GD+G + D +
Sbjct: 237 TMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTD 274
>5NQ7-A nrPDB
Length = 518
Score = 26.5 bits (57), Expect = 5.1, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 23 ASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGP 63
+ +S+ N+P + FH+H G SAG
Sbjct: 395 LPSNASIEISFPATANAPGSPHPFHLH--GHTFAVVRSAGS 433
>2XIK-A nrPDB
Length = 294
Score = 26.1 bits (56), Expect = 6.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
+ A+ + KG+ S+ P V + I NSP G H F + C++
Sbjct: 204 ITAIELAKGEPP---------NSDLHPMRVLFLIPKNSPPTLEGQHSKPFKEFVEACLNK 254
Query: 62 GPHFNPFKKT 71
P F P K
Sbjct: 255 DPRFRPTAKE 264
>3JCS-L nrPDB
Length = 145
Score = 25.7 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 49 HEFGDATNGCVSAGPHF-------NPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK 101
H+ G G G H N H + H G G + D K
Sbjct: 10 HQRGSTFCGYGRVGKHRKHESGRGNAGGMHHHRINFDKYHPGYFGKLGMDHYHRKKNPMW 69
Query: 102 DSLIKLIGPTSVV 114
I L + ++
Sbjct: 70 KPTINLNNLSRLI 82
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.307 0.138 0.415
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,040,061
Number of Sequences: 36641
Number of extensions: 286413
Number of successful extensions: 730
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 139
length of query: 154
length of database: 10,336,785
effective HSP length: 89
effective length of query: 65
effective length of database: 7,075,736
effective search space: 459922840
effective search space used: 459922840
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 55 (25.7 bits)