BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= O95059
         (124 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6AHU-H nrPDB                                                          254   9e-69
3WZ0-C nrPDB                                                           29   0.48 
2AV5-A nrPDB                                                           28   1.0  
5K13-A nrPDB                                                           26   5.4  
3A9E-B nrPDB                                                           25   6.1  

>6AHU-H nrPDB
          Length = 124

 Score =  254 bits (648), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MPAPAATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALP 60
           MPAPAATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALP
Sbjct: 1   MPAPAATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALP 60

Query: 61  LDILTYEEKTLSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVSPFLLALSGNSRE 120
           LDILTYEEKTLSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVSPFLLALSGNSRE
Sbjct: 61  LDILTYEEKTLSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVSPFLLALSGNSRE 120

Query: 121 LVLD 124
           LVLD
Sbjct: 121 LVLD 124


>3WZ0-C nrPDB
          Length = 120

 Score = 29.3 bits (64), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 63  ILTYEEKTLSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVS 108
            + ++EK+ + I+R+    + +L  +LT+L    G K  FR + VS
Sbjct: 58  FIKFDEKSQTGIVRVDRKHVEELRFALTMLTEINGSKVIFRTLGVS 103


>2AV5-A nrPDB
          Length = 120

 Score = 28.1 bits (61), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 14  KNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALPLD-ILTYEEKTLS 72
           ++   Y   KV  E Q      N  + K+ + +A     GE+  A     ++ ++E T +
Sbjct: 13  RDKKRYIAFKVISENQ-----FNKDEIKEAIWNACLRTLGELGTAKAKPWLIKFDETTQT 67

Query: 73  AILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVS 108
            I+R   + +  +  SLTL+    G K   +V+ VS
Sbjct: 68  GIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVS 103


>5K13-A nrPDB
          Length = 246

 Score = 25.8 bits (55), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 5   AATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDL-FGEVDAALPLDI 63
           AA  + ++ +  + Y   +  + F D G+ LN  Q        + DL F   +  LPL++
Sbjct: 83  AACLDILILRICTRYTPEQDTMTFSD-GLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEM 141

Query: 64  LTYEEKTLSAILRIC 78
              E   LSAI  IC
Sbjct: 142 DDAETGLLSAICLIC 156


>3A9E-B nrPDB
          Length = 269

 Score = 25.4 bits (54), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 5   AATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDL-FGEVDAALPLDI 63
           AA  + ++ +  + Y   +  + F D G+ LN  Q        + DL F   +  LPL++
Sbjct: 111 AACLDILILRICTRYTPEQDTMTFSD-GLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEM 169

Query: 64  LTYEEKTLSAILRIC 78
              E   LSAI  IC
Sbjct: 170 DDAETGLLSAICLIC 184


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6AHU-H nrPDB                                                          258   5e-70

Sequences not found previously or not previously below threshold:

3WZ0-C nrPDB                                                           29   0.58 
2AV5-A nrPDB                                                           27   2.9  
5K13-A nrPDB                                                           26   3.9  
3A9E-B nrPDB                                                           26   3.9  
2WYS-A nrPDB                                                           25   7.8  


CONVERGED!
>6AHU-H nrPDB
          Length = 124

 Score =  258 bits (659), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MPAPAATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALP 60
           MPAPAATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALP
Sbjct: 1   MPAPAATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALP 60

Query: 61  LDILTYEEKTLSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVSPFLLALSGNSRE 120
           LDILTYEEKTLSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVSPFLLALSGNSRE
Sbjct: 61  LDILTYEEKTLSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVSPFLLALSGNSRE 120

Query: 121 LVLD 124
           LVLD
Sbjct: 121 LVLD 124


>3WZ0-C nrPDB
          Length = 120

 Score = 28.8 bits (63), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 64  LTYEEKTLSAILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVS 108
           + ++EK+ + I+R+    + +L  +LT+L    G K  FR + VS
Sbjct: 59  IKFDEKSQTGIVRVDRKHVEELRFALTMLTEINGSKVIFRTLGVS 103


>2AV5-A nrPDB
          Length = 120

 Score = 26.5 bits (57), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 14  KNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEVDAALPLD-ILTYEEKTLS 72
           ++   Y   KV  E Q      N  + K+ + +A     GE+  A     ++ ++E T +
Sbjct: 13  RDKKRYIAFKVISENQ-----FNKDEIKEAIWNACLRTLGELGTAKAKPWLIKFDETTQT 67

Query: 73  AILRICSSGLVKLWSSLTLLGSYKGKKCAFRVIQVS 108
            I+R   + +  +  SLTL+    G K   +V+ VS
Sbjct: 68  GIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVS 103


>5K13-A nrPDB
          Length = 246

 Score = 26.1 bits (56), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 5   AATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDL-FGEVDAALPLDI 63
           AA  + ++ +  + Y   +  + F D G+ LN  Q        + DL F   +  LPL++
Sbjct: 83  AACLDILILRICTRYTPEQDTMTFSD-GLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEM 141

Query: 64  LTYEEKTLSAILRIC 78
              E   LSAI  IC
Sbjct: 142 DDAETGLLSAICLIC 156


>3A9E-B nrPDB
          Length = 269

 Score = 26.1 bits (56), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 5   AATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDL-FGEVDAALPLDI 63
           AA  + ++ +  + Y   +  + F D G+ LN  Q        + DL F   +  LPL++
Sbjct: 111 AACLDILILRICTRYTPEQDTMTFSD-GLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEM 169

Query: 64  LTYEEKTLSAILRIC 78
              E   LSAI  IC
Sbjct: 170 DDAETGLLSAICLIC 184


>2WYS-A nrPDB
          Length = 540

 Score = 25.0 bits (53), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 28  FQDCGVGLNAAQFKQLLISAVKDLFGEVDAALP-LDILTYE 67
           FQD G  ++ +   Q L S +K++F E+    P L++  Y+
Sbjct: 282 FQDNGNWVSQSVMDQRLESYIKNMFAEIQRQYPSLNLYAYD 322


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.322    0.137    0.401 

Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,463,877
Number of Sequences: 36641
Number of extensions: 204317
Number of successful extensions: 348
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 16
length of query: 124
length of database: 10,336,785
effective HSP length: 85
effective length of query: 39
effective length of database: 7,222,300
effective search space: 281669700
effective search space used: 281669700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)