BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= O95050
(263 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
2A14-A nrPDB 538 e-153
5YJI-A nrPDB 270 5e-73
5YJF-A nrPDB 268 2e-72
3KQY-A nrPDB 181 3e-46
3DMF-A nrPDB 32 0.24
1RI1-A nrPDB 32 0.36
4ILK-A nrPDB 31 0.62
3QHA-A nrPDB 29 1.9
3NZW-E nrPDB 29 2.6
1DMU-A nrPDB 28 3.5
5OJ2-A nrPDB 28 3.8
2ASI-A nrPDB 27 7.3
2VA8-A nrPDB 27 7.5
1WLJ-A nrPDB 27 8.4
>2A14-A nrPDB
Length = 263
Score = 538 bits (1385), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/263 (99%), Positives = 261/263 (99%)
Query: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI
Sbjct: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
Query: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN
Sbjct: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
Query: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL
Sbjct: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
Query: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ 240
CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEK EVEQAVLDAGFDIEQLLHSPQ
Sbjct: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240
Query: 241 SYSVTNAANNGVCFIVARKKPGP 263
SYSVTNAANNGVC IVARKKPGP
Sbjct: 241 SYSVTNAANNGVCCIVARKKPGP 263
>5YJI-A nrPDB
Length = 284
Score = 270 bits (690), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 139/262 (53%), Positives = 177/262 (67%), Gaps = 1/262 (0%)
Query: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
M+ GFT D Y HF PRDYL YYSF E E+L+ L+ L K F G ++G+ LI
Sbjct: 21 MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 80
Query: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
DIGSGPTIYQ+L+AC+SF +I +SD+TD+N EL+KWLKKEPGA+DW+P V + C+LEGN
Sbjct: 81 DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 140
Query: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
+ EKEEKLR A+K+VLKCDV PL LP ADC+L+ L ++ AC L AYR AL
Sbjct: 141 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 200
Query: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ 240
NL SLLKPGG LV L+ YM+G+++FS + L E V AV +AG+ IEQ Q
Sbjct: 201 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 260
Query: 241 SYSVTNAANNGVCFIVARKKPG 262
+YS T + N G+ +V R KPG
Sbjct: 261 NYSSTTSNNEGLFSLVGR-KPG 281
>5YJF-A nrPDB
Length = 284
Score = 268 bits (685), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/263 (52%), Positives = 176/263 (66%)
Query: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
M+ GFT D Y HF PRDYL YY F S E+++LK L+ L K F G++GD LI
Sbjct: 21 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 80
Query: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
DIGSGPTIYQ+L+AC+SF++I ++D++D+N +ELEKWLK P A+DW+P V + C+LEGN
Sbjct: 81 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGN 140
Query: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
+ EKEEKLR AVK+VLKCDV PL LP ADCVL+ L ++ AC L Y AL
Sbjct: 141 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 200
Query: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ 240
NL SLLKPGG LV L+ YM+G+++FS + L +E VE AV +AG+ IE Q
Sbjct: 201 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 260
Query: 241 SYSVTNAANNGVCFIVARKKPGP 263
SYS T A N G+ +VARK P
Sbjct: 261 SYSSTMANNEGLFSLVARKLSRP 283
>3KQY-A nrPDB
Length = 289
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 145/234 (61%), Gaps = 16/234 (6%)
Query: 11 YQKHFLPRDYLATYYSFDGSPSPEAEMLKFN------LECLHKTFGPGGLQGDTLIDIGS 64
YQ+ F PR YL Y+ P ++ N L CL +TF G + G TLIDIGS
Sbjct: 27 YQR-FEPRAYLRNNYA-----PPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGS 80
Query: 65 GPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRW 124
GPT+YQ+L+AC F+DIT++DF + NR+EL +WL++EPGA++W+ + AC +EG W
Sbjct: 81 GPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW 140
Query: 125 EEKEEKLRAAVKRVLKCDVHLGNPL---APAVLPLADCVLTLLAMECACCSLDAYRAALC 181
++KE +LRA VKRVL DVH PL +PA LP AD +++ +E L +++ AL
Sbjct: 141 QDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLP-ADALVSAFCLEAVSPDLASFQRALD 199
Query: 182 NLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQL 235
++ +LL+PGGHL+ L Y+ G+ + V + +EEV +A++ +G+ + L
Sbjct: 200 HITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 253
>3DMF-A nrPDB
Length = 381
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 8 GDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSG 65
G EY H LP + A G P + +L LE L + GP G++G ++D+G+G
Sbjct: 195 GAEYTFHHLPGVFSA------GKVDPASLLL---LEALQERLGPEGVRGRQVLDLGAG 243
>1RI1-A nrPDB
Length = 298
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 158 DCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR---LPSYMVGK--REFS 212
D + + + A + ++ A N+A L+PGG+ + TV R L Y G+ +F
Sbjct: 135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFY 194
Query: 213 CVALEKEE 220
+ LEK E
Sbjct: 195 KIELEKME 202
>4ILK-A nrPDB
Length = 359
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 55 QGDTLIDIGSGP---TIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDW 107
+ DT++ G+GP TI QVL + +++ ++D D E LEK KE GA DW
Sbjct: 180 ENDTVLVYGAGPIGLTIVQVLKGVYNVKNVIVADRID---ERLEK--AKESGA-DW 229
>3QHA-A nrPDB
Length = 296
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 116 ELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDA 175
EL G E E+++ A K +H G P A + LA +LT + AC ++
Sbjct: 142 ELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKL 201
Query: 176 YRAALCNLASL 186
AA +L +L
Sbjct: 202 AEAAGLDLQAL 212
>3NZW-E nrPDB
Length = 234
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK 188
++L + K+++KCD H+G LA + P A + L +C SL + N ++
Sbjct: 54 DELSSYQKKIIKCDEHMGLSLA-GLAPDARVLSNYLRQQCNYSSL------VFNRKLAVE 106
Query: 189 PGGHLV 194
GHL+
Sbjct: 107 RAGHLL 112
>1DMU-A nrPDB
Length = 299
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 217 EKEEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCFIVARKKPGP 263
E V + L G D LL SP YS+TN + + V K GP
Sbjct: 102 EDITVREIGLPTGPDERYLLTSPTIYSLTNGFTDSIMMFVDIKSVGP 148
>5OJ2-A nrPDB
Length = 910
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 61 DIGSGPTIYQVLAACDSFQ------DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFA 114
D+G ++QV A S + + TLS +N + +W +KEP A D P +K+
Sbjct: 596 DVGVSACLFQVSAKAYSPEFYYDTPNPTLSQKQSKNYSYILQWTQKEPDAVD--PILKYR 653
Query: 115 CELE 118
E+
Sbjct: 654 LEVR 657
>2ASI-A nrPDB
Length = 361
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 27 FDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQ 79
FD S S + +NL + T G GL + I IG Q+LA D+ +
Sbjct: 63 FDPSASSTFKATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVR 115
>2VA8-A nrPDB
Length = 715
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 65 GPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPA 110
GP + V + LS T N +++ KWL EP A +W P
Sbjct: 163 GPVVESVTIRAKRRNLLALSA-TISNYKQIAKWLGAEPVATNWRPV 207
>1WLJ-A nrPDB
Length = 189
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 163 LLAMECACCSLDAYRA---ALCNLASL---------LKPGGHLV---TTVTLRLPSYMVG 207
++AM+C L +R A C+L ++ ++P G + T V+ P +MVG
Sbjct: 7 VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66
Query: 208 KREFSCVALEKEEVEQAVLDAGFDIEQ 234
F+ LE ++ + L G D++
Sbjct: 67 ATPFAVARLEILQLLKGKLVVGHDLKH 93
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
2A14-A nrPDB 466 e-132
5YJI-A nrPDB 449 e-127
5YJF-A nrPDB 448 e-126
3KQY-A nrPDB 336 6e-93
Sequences not found previously or not previously below threshold:
1L5N-A nrPDB 34 0.080
2VA8-A nrPDB 32 0.19
1D2C-A nrPDB 32 0.36
3OFK-A nrPDB 32 0.39
1H2A-S nrPDB 29 1.6
4KXR-B nrPDB 28 2.9
1ZZG-A nrPDB 27 7.7
CONVERGED!
>2A14-A nrPDB
Length = 263
Score = 466 bits (1198), Expect = e-132, Method: Composition-based stats.
Identities = 261/263 (99%), Positives = 261/263 (99%)
Query: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI
Sbjct: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
Query: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN
Sbjct: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
Query: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL
Sbjct: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
Query: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ 240
CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEK EVEQAVLDAGFDIEQLLHSPQ
Sbjct: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240
Query: 241 SYSVTNAANNGVCFIVARKKPGP 263
SYSVTNAANNGVC IVARKKPGP
Sbjct: 241 SYSVTNAANNGVCCIVARKKPGP 263
>5YJI-A nrPDB
Length = 284
Score = 449 bits (1154), Expect = e-127, Method: Composition-based stats.
Identities = 139/262 (53%), Positives = 177/262 (67%), Gaps = 1/262 (0%)
Query: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
M+ GFT D Y HF PRDYL YYSF E E+L+ L+ L K F G ++G+ LI
Sbjct: 21 MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 80
Query: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
DIGSGPTIYQ+L+AC+SF +I +SD+TD+N EL+KWLKKEPGA+DW+P V + C+LEGN
Sbjct: 81 DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 140
Query: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
+ EKEEKLR A+K+VLKCDV PL LP ADC+L+ L ++ AC L AYR AL
Sbjct: 141 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 200
Query: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ 240
NL SLLKPGG LV L+ YM+G+++FS + L E V AV +AG+ IEQ Q
Sbjct: 201 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 260
Query: 241 SYSVTNAANNGVCFIVARKKPG 262
+YS T + N G+ +V RK PG
Sbjct: 261 NYSSTTSNNEGLFSLVGRK-PG 281
>5YJF-A nrPDB
Length = 284
Score = 448 bits (1152), Expect = e-126, Method: Composition-based stats.
Identities = 138/263 (52%), Positives = 176/263 (66%)
Query: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
M+ GFT D Y HF PRDYL YY F S E+++LK L+ L K F G++GD LI
Sbjct: 21 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 80
Query: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
DIGSGPTIYQ+L+AC+SF++I ++D++D+N +ELEKWLK P A+DW+P V + C+LEGN
Sbjct: 81 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGN 140
Query: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
+ EKEEKLR AVK+VLKCDV PL LP ADCVL+ L ++ AC L Y AL
Sbjct: 141 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 200
Query: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ 240
NL SLLKPGG LV L+ YM+G+++FS + L +E VE AV +AG+ IE Q
Sbjct: 201 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 260
Query: 241 SYSVTNAANNGVCFIVARKKPGP 263
SYS T A N G+ +VARK P
Sbjct: 261 SYSSTMANNEGLFSLVARKLSRP 283
>3KQY-A nrPDB
Length = 289
Score = 336 bits (862), Expect = 6e-93, Method: Composition-based stats.
Identities = 102/260 (39%), Positives = 151/260 (58%), Gaps = 18/260 (6%)
Query: 11 YQKHFLPRDYLATYYSFDGSPSPEAEMLKFN------LECLHKTFGPGGLQGDTLIDIGS 64
YQ+ F PR YL Y+ P ++ N L CL +TF G + G TLIDIGS
Sbjct: 27 YQR-FEPRAYLRNNYA-----PPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGS 80
Query: 65 GPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRW 124
GPT+YQ+L+AC F+DIT++DF + NR+EL +WL++EPGA++W+ + AC +EG W
Sbjct: 81 GPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW 140
Query: 125 EEKEEKLRAAVKRVLKCDVHLGNPLA---PAVLPLADCVLTLLAMECACCSLDAYRAALC 181
++KE +LRA VKRVL DVH PL PA LP AD +++ +E L +++ AL
Sbjct: 141 QDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLP-ADALVSAFCLEAVSPDLASFQRALD 199
Query: 182 NLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLL--HSP 239
++ +LL+PGGHL+ L Y+ G+ + V + +EEV +A++ +G+ + L P
Sbjct: 200 HITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMP 259
Query: 240 QSYSVTNAANNGVCFIVARK 259
GV F A+K
Sbjct: 260 AHLQTGVDDVKGVFFAWAQK 279
>1L5N-A nrPDB
Length = 356
Score = 33.9 bits (76), Expect = 0.080, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 161 LTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVA-LEKE 219
L L + +A ++ LLKP G L TL + + G + + ++
Sbjct: 4 LHALLRDIPAPDAEAMARTQQHIDGLLKPPGSLGRLETLAVQ--LAGMPGLNGTPQVGEK 61
Query: 220 EVEQAVLDAGFDIEQLLHSPQSYSVTNAAN-----NGVCFIVAR 258
V D G E + SP+ + AAN GVC + A+
Sbjct: 62 AVLVMCADHGVWDEGVAVSPKIVTAIQAANMTRGTTGVCVLAAQ 105
>2VA8-A nrPDB
Length = 715
Score = 32.3 bits (72), Expect = 0.19, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 24/132 (18%)
Query: 3 GGFTGGDEYQKHFLPRDYLATYYSFDG--SPSPE--AEMLKFNLECLHKTFGPGGLQGDT 58
G + D + K++ + TY D PE E+ F L+ LH
Sbjct: 110 GDYDTDDAWLKNYD--IIITTYEKLDSLWRHRPEWLNEVNYFVLDELH-----------Y 156
Query: 59 LIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELE 118
L D GP + V + LS T N +++ KWL EP A +W P +E
Sbjct: 157 LNDPERGPVVESVTIRAKRRNLLALSA-TISNYKQIAKWLGAEPVATNWRPVP----LIE 211
Query: 119 GNSGRWEEKEEK 130
G + E+++K
Sbjct: 212 G--VIYPERKKK 221
>1D2C-A nrPDB
Length = 292
Score = 31.6 bits (70), Expect = 0.36, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 154 LPLADCVLTLLAMECACCSLD-------AYRAALCNLASLLKPGGHLVT 195
+P D ++ + + L +R AL N+AS+++PGG LV
Sbjct: 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
>3OFK-A nrPDB
Length = 216
Score = 31.6 bits (70), Expect = 0.39, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 172 SLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFD 231
+ R A+ N+ +L PGGHLV R + VA E V + +A +
Sbjct: 129 DMTQMRTAIDNMVKMLAPGGHLVFGSARDATC-----RRWGHVA-GAETVITILTEALTE 182
Query: 232 IEQLLHSPQS 241
+E++ QS
Sbjct: 183 VERVQCQGQS 192
>1H2A-S nrPDB
Length = 317
Score = 29.3 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 213 CVALEKEEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCFIVARKKPGP 263
+ L KE VE+ + + G L + +VT VAR GP
Sbjct: 4 SIGLGKEGVEERLAERGVSRRDFLKFCTAIAVTMGMGPAFAPEVARALMGP 54
>4KXR-B nrPDB
Length = 194
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 58 TLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWT 108
+L+D +GP + Q++ A F L+D E+E+ + + AY+W
Sbjct: 51 SLMDAWAGPVVMQLMEAAKPFVR-WLTDLC-VQLSEVERQIHEIVRAYEWA 99
>1ZZG-A nrPDB
Length = 415
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 196 TVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDI 232
L SY+ GK F + E E +A+ +AG +
Sbjct: 325 VEGLEAASYLFGKTLFQLLKAEAEATYEALAEAGQRV 361
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.311 0.134 0.378
Lambda K H
0.267 0.0407 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,624,800
Number of Sequences: 36641
Number of extensions: 422964
Number of successful extensions: 1061
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1039
Number of HSP's gapped (non-prelim): 29
length of query: 263
length of database: 10,336,785
effective HSP length: 95
effective length of query: 168
effective length of database: 6,855,890
effective search space: 1151789520
effective search space used: 1151789520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 58 (27.0 bits)