BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= O94503
(228 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1ZP2-A nrPDB 459 e-130
4F7N-B nrPDB 97 5e-21
4NST-B nrPDB 61 3e-10
1KXU-A nrPDB 36 0.011
5IYC-M nrPDB 35 0.024
5WH1-A nrPDB 35 0.032
2IVX-A nrPDB 35 0.038
2PK2-A nrPDB 34 0.051
3MIA-B nrPDB 34 0.063
6GZH-B nrPDB 32 0.24
1AIS-B nrPDB 32 0.29
5YQ5-A nrPDB 30 0.91
6FGJ-A nrPDB 30 1.2
6GAZ-Ae nrPDB 29 1.6
>1ZP2-A nrPDB
Length = 235
Score = 459 bits (1180), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 5 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 64
YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM
Sbjct: 1 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 60
Query: 65 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE 124
LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE
Sbjct: 61 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE 120
Query: 125 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 184
IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA
Sbjct: 121 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180
Query: 185 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE 228
LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE
Sbjct: 181 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE 224
>4F7N-B nrPDB
Length = 287
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 1 MAANYWASSQLTQLFL---------STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQR 51
MA N+W SS Q L DL+ L K I+ V+Q G+ L+LRQ+
Sbjct: 5 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ 64
Query: 52 VLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV--HIRTICNEANDLWSL 109
V+ATA V +R+ + + K + TC++L+ KVEE V + R I + L
Sbjct: 65 VIATATVYFKRFYARYSL-KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATS---VL 120
Query: 110 KVKLSRS----------NISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFA 159
K + S + +I E EF ++ ++D LIV+HPY L Q D L A
Sbjct: 121 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLA 180
Query: 160 WSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDAFKVILCVQRII 219
W IVND+Y + LCL+ P +A A L ++C + + + S D K++ ++ I+
Sbjct: 181 WRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAEL-SVDMEKILEIIRVIL 239
Query: 220 SIY 222
+Y
Sbjct: 240 KLY 242
>4NST-B nrPDB
Length = 268
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 34/204 (16%)
Query: 5 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 64
YW L + LE L+P ++ + + G RL L LAT I+ R+
Sbjct: 26 YWDKKDLAHT--PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFY 83
Query: 65 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEF- 123
+ + K F A C++L+ KVEE P + I +K +RS +++++F
Sbjct: 84 MF-HSFKQFPRYVTGACCLFLAGKVEETPKKCKDI-----------IKTARSLLNDVQFG 131
Query: 124 -------EIISVLDAFLI--------VHHPYTSL----EQAFHDGIINQKQLEFAWSIVN 164
E + VL+ L+ V HPY L +Q D QK ++ AW+ VN
Sbjct: 132 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVN 191
Query: 165 DSYASSLCLMAHPHQLAYAALLIS 188
DS ++L L P +A A + ++
Sbjct: 192 DSLCTTLSLQWEPEIIAVAVMYLA 215
>1KXU-A nrPDB
Length = 333
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 52 VLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 111
V+ TA + +R+ L N + ++ TC +L+CKV+E V + L
Sbjct: 89 VVGTACMYFKRFYLN-NSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE-SPLGQ 146
Query: 112 KLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHD-----GIINQKQL--EFAWSIVN 164
+ + I E E +I L+ LIVH+PY E D I+ ++ + A +N
Sbjct: 147 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLN 206
Query: 165 DSYASSLCLMAHPHQLAYAALLISC 189
+ L+ P Q+A A+L S
Sbjct: 207 RIALTDAYLLYTPSQIALTAILSSA 231
>5IYC-M nrPDB
Length = 316
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 36 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVH 95
+K + T DR+ L + ++ L ++ +K+ KG + +A+ + C+Y++C+ E P
Sbjct: 118 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSL-KGRANDAIASACLYIACRQEGVPRT 176
Query: 96 IRTIC 100
+ IC
Sbjct: 177 FKEIC 181
>5WH1-A nrPDB
Length = 211
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 36 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVH 95
+K + T DR+ L + ++ L ++ +K+ KG + +A+ + C+Y++C+ E P
Sbjct: 13 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSL-KGRANDAIASACLYIACRQEGVPRT 71
Query: 96 IRTIC 100
+ IC
Sbjct: 72 FKEIC 76
>2IVX-A nrPDB
Length = 257
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 38 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE 91
++Q G RL + Q + TAIV + R+ + + K F+ + +T ++L+ KVEE
Sbjct: 37 LIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTK-FNKNIISSTALFLAAKVEE 89
>2PK2-A nrPDB
Length = 358
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 38 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIR 97
++Q G RL + Q + TAIV + R+ + ++ + F ++ ++L+ KVEE P +
Sbjct: 44 LLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTR-FPGNSVAPAALFLAAKVEEQPKKLE 102
Query: 98 TICNEA----NDLWSLKVKLSRSNISEI------EFEIISVLDAFLIVHHPYT 140
+ A + SL S + + ++ E I+ L L + HP+T
Sbjct: 103 HVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHT 155
>3MIA-B nrPDB
Length = 266
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 38 VVQTFGDRLRLRQRVLATAIVLLRR-YMLKKNEEKGFSLEALVATCIYLSCKVEECP 93
++Q G RL + Q + TAIV + R YM++ + F ++ ++L+ KVEE P
Sbjct: 44 LLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQ--FPGNSVAPAALFLAAKVEEQP 98
>6GZH-B nrPDB
Length = 726
Score = 32.0 bits (71), Expect = 0.24, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 38 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIR 97
++Q G RL + Q + TAIV + R+ + ++ + F ++ ++L+ KVE P +
Sbjct: 44 LLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTR-FPGNSVAPAALFLAAKVEGQPKKLE 102
Query: 98 TICNEANDLW----SLKVKLSRSNISEI------EFEIISVLDAFLIVHHPYT 140
+ A+ SL S + + ++ E I+ L L + HP+T
Sbjct: 103 HVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHT 155
>1AIS-B nrPDB
Length = 200
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 62 RYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL-KVKLSRSNISE 120
R ++K +G S+E+++A C+Y +C++ + P RT+ +E D+ + K ++ RS
Sbjct: 38 REAVRKGLIRGRSIESVMAACVYAACRLLKVP---RTL-DEIADIARVDKKEIGRS---- 89
Query: 121 IEFEIISV---LDAFLIVHHPYTSLEQAFHDGI-INQKQLEFAWSIVNDSYASSLCLMAH 176
+ I+ L + P T F D + +++K A I++++Y L
Sbjct: 90 --YRFIARNLNLTPKKLFVKP-TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKS 146
Query: 177 PHQLAYAALLISC 189
P L AAL I+
Sbjct: 147 PAGLVAAALYIAS 159
>5YQ5-A nrPDB
Length = 430
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 109 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDS 166
L++ L +N+ E F + L+ L+ ++ + L+ DG++N L+ ++ ++DS
Sbjct: 142 LQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDS 199
>6FGJ-A nrPDB
Length = 237
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 61 RRYMLKKNEEKGF-SLEALVATCIYLSCKVEECPV--HIRTICNEANDLW-SLKVKLSRS 116
R+ ++ +E G+ SL +V+ ++L+ +VE PV IRTI D+W SL+ K+
Sbjct: 146 RKDYIQHPKENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTI---GMDMWASLEHKIRYK 202
Query: 117 NISEIE 122
N +E E
Sbjct: 203 NNAETE 208
>6GAZ-Ae nrPDB
Length = 390
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 14 LFLSTDLESLE-PTCLSKD-TIYQWKVVQTFGDRLRLRQR 51
L LST L + PTC ++D +Y+ ++ Q G+R+RL QR
Sbjct: 329 LTLSTQLAKAQLPTCEAEDIAVYEQRLQQWHGERVRLIQR 368
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1ZP2-A nrPDB 309 7e-85
4F7N-B nrPDB 268 1e-72
4NST-B nrPDB 208 1e-54
Sequences not found previously or not previously below threshold:
6GZH-B nrPDB 83 8e-17
2PK2-A nrPDB 80 7e-16
3MIA-B nrPDB 79 1e-15
2IVX-A nrPDB 70 6e-13
1KXU-A nrPDB 67 6e-12
5IYC-M nrPDB 37 0.006
5WH1-A nrPDB 35 0.019
3DDQ-B nrPDB 32 0.25
4YC3-B nrPDB 31 0.51
3QHW-B nrPDB 30 0.71
1AIS-B nrPDB 30 0.84
2W99-A nrPDB 29 2.1
6F41-V nrPDB 28 4.4
6CNF-R nrPDB 27 5.2
5YQ5-A nrPDB 27 6.7
>1ZP2-A nrPDB
Length = 235
Score = 309 bits (791), Expect = 7e-85, Method: Composition-based stats.
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 5 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 64
YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM
Sbjct: 1 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 60
Query: 65 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE 124
LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE
Sbjct: 61 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE 120
Query: 125 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 184
IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA
Sbjct: 121 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180
Query: 185 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE 228
LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE
Sbjct: 181 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE 224
>4F7N-B nrPDB
Length = 287
Score = 268 bits (686), Expect = 1e-72, Method: Composition-based stats.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 1 MAANYWASSQLTQLFL---------STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQR 51
MA N+W SS Q L DL+ L K I+ V+Q G+ L+LRQ+
Sbjct: 5 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ 64
Query: 52 VLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV--HIRTICNEANDLWSL 109
V+ATA V +R+ + + K + TC++L+ KVEE V + R I + L
Sbjct: 65 VIATATVYFKRFYARYSL-KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATS---VL 120
Query: 110 KVKLSRS----------NISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFA 159
K + S + +I E EF ++ ++D LIV+HPY L Q D L A
Sbjct: 121 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLA 180
Query: 160 WSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDAFKVILCVQRII 219
W IVND+Y + LCL+ P +A A L ++C + + + S D K++ ++ I+
Sbjct: 181 WRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAEL-SVDMEKILEIIRVIL 239
Query: 220 SIY 222
+Y
Sbjct: 240 KLY 242
>4NST-B nrPDB
Length = 268
Score = 208 bits (530), Expect = 1e-54, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 34/215 (15%)
Query: 5 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 64
YW L + LE L+P ++ + + G RL L LAT I+ R+
Sbjct: 26 YWDKKDLAHT--PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFY 83
Query: 65 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEF- 123
+ + K F A C++L+ KVEE P + I +K +RS +++++F
Sbjct: 84 MF-HSFKQFPRYVTGACCLFLAGKVEETPKKCKDI-----------IKTARSLLNDVQFG 131
Query: 124 -------EIISVLDAFLI--------VHHPYTSL----EQAFHDGIINQKQLEFAWSIVN 164
E + VL+ L+ V HPY L +Q D QK ++ AW+ VN
Sbjct: 132 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVN 191
Query: 165 DSYASSLCLMAHPHQLAYAALLISCCNDENTIPKL 199
DS ++L L P +A A + ++ + I +
Sbjct: 192 DSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEW 226
>6GZH-B nrPDB
Length = 726
Score = 83.2 bits (204), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 75/184 (40%), Gaps = 12/184 (6%)
Query: 17 STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLE 76
+ ++P ++Q G RL + Q + TAIV + R+ + F
Sbjct: 23 PSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM-IQSFTRFPGN 81
Query: 77 ALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL--SRSNISEIEFEIISVLDAFLI 134
++ ++L+ KVE P + + A+ + L +RS + + + +L++ ++
Sbjct: 82 SVAPAALFLAAKVEGQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIIL 141
Query: 135 --------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA-SSLCLMAHPHQLAYAAL 185
+ HP+T + + ++ + ++ + +S ++ L P +A +
Sbjct: 142 QTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCI 201
Query: 186 LISC 189
++C
Sbjct: 202 HLAC 205
>2PK2-A nrPDB
Length = 358
Score = 80.1 bits (196), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 76/184 (41%), Gaps = 12/184 (6%)
Query: 17 STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLE 76
+ ++P ++Q G RL + Q + TAIV + R+ + F
Sbjct: 23 PSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM-IQSFTRFPGN 81
Query: 77 ALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL--SRSNISEIEFEIISVLDAFLI 134
++ ++L+ KVEE P + + A+ + L +RS + + + +L++ ++
Sbjct: 82 SVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIIL 141
Query: 135 --------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA-SSLCLMAHPHQLAYAAL 185
+ HP+T + + ++ + ++ + +S ++ L P +A +
Sbjct: 142 QTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCI 201
Query: 186 LISC 189
++C
Sbjct: 202 HLAC 205
>3MIA-B nrPDB
Length = 266
Score = 79.3 bits (194), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 76/184 (41%), Gaps = 12/184 (6%)
Query: 17 STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLE 76
+ ++P ++Q G RL + Q + TAIV + R+ + F
Sbjct: 23 PSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM-IQSFTQFPGN 81
Query: 77 ALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL--SRSNISEIEFEIISVLDAFLI 134
++ ++L+ KVEE P + + A+ + L +RS + + + +L++ ++
Sbjct: 82 SVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIIL 141
Query: 135 --------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA-SSLCLMAHPHQLAYAAL 185
+ HP+T + + ++ + ++ + +S ++ L P +A +
Sbjct: 142 QTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCI 201
Query: 186 LISC 189
++C
Sbjct: 202 HLAC 205
>2IVX-A nrPDB
Length = 257
Score = 70.5 bits (171), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 74/184 (40%), Gaps = 12/184 (6%)
Query: 17 STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLE 76
+ +E ++Q G RL + Q + TAIV + R+ + + F+
Sbjct: 16 PSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYM-HHSFTKFNKN 74
Query: 77 ALVATCIYLSCKVEECPVHIRTI--CNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLI 134
+ +T ++L+ KVEE + + A + ++ + + + +L+ ++
Sbjct: 75 IISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIML 134
Query: 135 --------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA-SSLCLMAHPHQLAYAAL 185
+ HP+T + + ++ + ++ + +S ++ CL P +A +
Sbjct: 135 QTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCI 194
Query: 186 LISC 189
++C
Sbjct: 195 HLAC 198
>1KXU-A nrPDB
Length = 333
Score = 67.0 bits (162), Expect = 6e-12, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 11/197 (5%)
Query: 15 FLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLR--LRQRVLATAIVLLRRYMLKKNEEKG 72
L D LEP Y K + F + + + V+ TA + +R+ L + +
Sbjct: 50 VLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEY 109
Query: 73 FSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAF 132
++ TC +L+CKV+E V + + K + I E E +I L+
Sbjct: 110 HPRIIML-TCAFLACKVDEFNVSSPQFVGNLRESPLGQEK-ALEQILEYELLLIQQLNFH 167
Query: 133 LIVHHPYTSLEQAFHDGIINQKQLE-------FAWSIVNDSYASSLCLMAHPHQLAYAAL 185
LIVH+PY E D LE A +N + L+ P Q+A A+
Sbjct: 168 LIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAI 227
Query: 186 LISCCNDENTIPKLLDL 202
L S T+ L
Sbjct: 228 LSSASRAGITMESYLSE 244
>5IYC-M nrPDB
Length = 316
Score = 37.0 bits (84), Expect = 0.006, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 37 KVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHI 96
K + T DR+ L + ++ L ++ +K+ KG + +A+ + C+Y++C+ E P
Sbjct: 119 KEITTMADRINLPRNIVDRTNNLFKQVYEQKSL-KGRANDAIASACLYIACRQEGVPRTF 177
Query: 97 RTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQL 156
+ IC + ++S+ I I+ L+ + + + + + + KQ+
Sbjct: 178 KEICAVS--------RISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCL-PKQV 228
Query: 157 EFAWS-IVNDSYASSLCLMAHPHQLAYAALLIS 188
+ A + I + L P +A AA+ ++
Sbjct: 229 QMAATHIARKAVELDLVPGRSPISVAAAAIYMA 261
>5WH1-A nrPDB
Length = 211
Score = 35.4 bits (80), Expect = 0.019, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
Query: 37 KVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHI 96
K + T DR+ L + ++ L ++ +K+ KG + +A+ + C+Y++C+ E P
Sbjct: 14 KEITTMADRINLPRNIVDRTNNLFKQVYEQKSL-KGRANDAIASACLYIACRQEGVPRTF 72
Query: 97 RTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQL 156
+ IC + ++S+ I I+ L+ + + + + + + ++
Sbjct: 73 KEICAVS--------RISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQ 124
Query: 157 EFAWSIVNDSYASSLCLMAHPHQLAYAALLIS 188
A I + L P +A AA+ ++
Sbjct: 125 MAATHIARKAVELDLVPGRSPISVAAAAIYMA 156
>3DDQ-B nrPDB
Length = 269
Score = 31.6 bits (70), Expect = 0.25, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 10/151 (6%)
Query: 41 TFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTI 99
G+ +L+ L A+ + R++ + +G L+ + + L+ K EE P +
Sbjct: 50 EVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG-KLQLVGTAAMLLASKFEEIYPPEVAEF 108
Query: 100 CNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAF-HDGIINQKQLEF 158
+D ++ K + +E ++ VL L L Q F H N K
Sbjct: 109 VYITDDTYTKK------QVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESL 162
Query: 159 AWSIVNDSYA-SSLCLMAHPHQLAYAALLIS 188
A + S + L P +A AA ++
Sbjct: 163 AMFLGELSLIDADPYLKYLPSVIAAAAFHLA 193
>4YC3-B nrPDB
Length = 273
Score = 30.8 bits (68), Expect = 0.51, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 8/145 (5%)
Query: 45 RLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEA 103
+ RL Q + + ++ R+M + K L+ + T ++++ K EE P I
Sbjct: 55 KFRLLQETMYMTVSIIDRFMQNNSVPKKM-LQLVGVTAMFIASKYEEMYPPEIGDFAFVT 113
Query: 104 NDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIV 163
++ ++ I ++E +I+ L+ L P L +A G ++ +Q A ++
Sbjct: 114 DNT------YTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLM 167
Query: 164 NDSYASSLCLMAHPHQLAYAALLIS 188
+ + P Q+A A ++
Sbjct: 168 ELTMLDYDMVHFPPSQIAAGAFSLA 192
>3QHW-B nrPDB
Length = 261
Score = 30.4 bits (67), Expect = 0.71, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 10/151 (6%)
Query: 41 TFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTI 99
G+ +L+ L A+ + R++ + +G L+ + + L+ K EE P +
Sbjct: 49 EVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG-KLQLVGTAAMLLASKFEEIYPPEVAEF 107
Query: 100 CNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFA 159
+D + S+ + +E ++ VL L L Q F ++E
Sbjct: 108 VYITDDTY------SKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESL 161
Query: 160 WSIVND--SYASSLCLMAHPHQLAYAALLIS 188
+ + + L P +A AA ++
Sbjct: 162 AMFLGELSLIDADPYLKYLPSLIAGAAFHLA 192
>1AIS-B nrPDB
Length = 200
Score = 30.0 bits (66), Expect = 0.84, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 60 LRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNIS 119
L R ++K +G S+E+++A C+Y +C++ + P + I + A + R
Sbjct: 36 LYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIAR 95
Query: 120 EIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQ 179
+++ L V P + + + +++K A I++++Y L P
Sbjct: 96 N-----LNLTPKKLFVK-PTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAG 149
Query: 180 LAYAALLISCCND-ENTIPKLLDLIKST 206
L AAL I+ + E + + +
Sbjct: 150 LVAAALYIASLLEGEKRTQREVAEVARV 177
>2W99-A nrPDB
Length = 271
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 20 LESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALV 79
+ ++ L + + + + V A+ L R++ + +K L+ L
Sbjct: 45 FKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKS-RLQLLG 103
Query: 80 ATCIYLSCKVEEC 92
ATC++++ K++E
Sbjct: 104 ATCMFVASKMKET 116
>6F41-V nrPDB
Length = 596
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 78 LVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHH 137
++A+C+Y++C+ E+ + + + ++ + + D L + H
Sbjct: 125 VIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITELPLADPSLFIQH 184
Query: 138 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP 197
L+ A + + ++ A + D P +A A +L++C N +
Sbjct: 185 FAEKLDLADKKIKVVKDAVKLAQRMSKDWMFEG----RRPAGIAGACILLAC--RMNNLR 238
Query: 198 KLLDLIKST 206
+ I +
Sbjct: 239 RTHTEIVAV 247
>6CNF-R nrPDB
Length = 736
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 78 LVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHH 137
++A+C+Y++C+ E+ + + + ++ + + D L + H
Sbjct: 125 VIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITELPLADPSLFIQH 184
Query: 138 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP 197
L+ A + + ++ A + D P +A A +L++C N +
Sbjct: 185 FAEKLDLADKKIKVVKDAVKLAQRMSKDWMFEG----RRPAGIAGACILLAC--RMNNLR 238
Query: 198 KLLDLIKST 206
+ I +
Sbjct: 239 RTHTEIVAV 247
>5YQ5-A nrPDB
Length = 430
Score = 27.0 bits (58), Expect = 6.7, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 109 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA 168
L++ L +N+ E F + L+ L+ ++ + L+ DG++N L+ ++ ++DS
Sbjct: 142 LQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDSLL 201
Query: 169 SS 170
Sbjct: 202 KD 203
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.323 0.133 0.357
Lambda K H
0.267 0.0401 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,941,782
Number of Sequences: 36641
Number of extensions: 265431
Number of successful extensions: 1059
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 44
length of query: 228
length of database: 10,336,785
effective HSP length: 94
effective length of query: 134
effective length of database: 6,892,531
effective search space: 923599154
effective search space used: 923599154
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)