BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= O94503 (228 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1ZP2-A nrPDB 459 e-130 4F7N-B nrPDB 97 5e-21 4NST-B nrPDB 61 3e-10 1KXU-A nrPDB 36 0.011 5IYC-M nrPDB 35 0.024 5WH1-A nrPDB 35 0.032 2IVX-A nrPDB 35 0.038 2PK2-A nrPDB 34 0.051 3MIA-B nrPDB 34 0.063 6GZH-B nrPDB 32 0.24 1AIS-B nrPDB 32 0.29 5YQ5-A nrPDB 30 0.91 6FGJ-A nrPDB 30 1.2 6GAZ-Ae nrPDB 29 1.6 >1ZP2-A nrPDB Length = 235 Score = 459 bits (1180), Expect = e-130, Method: Compositional matrix adjust. Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 5 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 64 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM Sbjct: 1 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 60 Query: 65 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE 124 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE Sbjct: 61 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE 120 Query: 125 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 184 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA Sbjct: 121 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180 Query: 185 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE 228 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE Sbjct: 181 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE 224 >4F7N-B nrPDB Length = 287 Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 26/243 (10%) Query: 1 MAANYWASSQLTQLFL---------STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQR 51 MA N+W SS Q L DL+ L K I+ V+Q G+ L+LRQ+ Sbjct: 5 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ 64 Query: 52 VLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV--HIRTICNEANDLWSL 109 V+ATA V +R+ + + K + TC++L+ KVEE V + R I + L Sbjct: 65 VIATATVYFKRFYARYSL-KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATS---VL 120 Query: 110 KVKLSRS----------NISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFA 159 K + S + +I E EF ++ ++D LIV+HPY L Q D L A Sbjct: 121 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLA 180 Query: 160 WSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDAFKVILCVQRII 219 W IVND+Y + LCL+ P +A A L ++C + + + S D K++ ++ I+ Sbjct: 181 WRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAEL-SVDMEKILEIIRVIL 239 Query: 220 SIY 222 +Y Sbjct: 240 KLY 242 >4NST-B nrPDB Length = 268 Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 34/204 (16%) Query: 5 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 64 YW L + LE L+P ++ + + G RL L LAT I+ R+ Sbjct: 26 YWDKKDLAHT--PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFY 83 Query: 65 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEF- 123 + + K F A C++L+ KVEE P + I +K +RS +++++F Sbjct: 84 MF-HSFKQFPRYVTGACCLFLAGKVEETPKKCKDI-----------IKTARSLLNDVQFG 131 Query: 124 -------EIISVLDAFLI--------VHHPYTSL----EQAFHDGIINQKQLEFAWSIVN 164 E + VL+ L+ V HPY L +Q D QK ++ AW+ VN Sbjct: 132 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVN 191 Query: 165 DSYASSLCLMAHPHQLAYAALLIS 188 DS ++L L P +A A + ++ Sbjct: 192 DSLCTTLSLQWEPEIIAVAVMYLA 215 >1KXU-A nrPDB Length = 333 Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%) Query: 52 VLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 111 V+ TA + +R+ L N + ++ TC +L+CKV+E V + L Sbjct: 89 VVGTACMYFKRFYLN-NSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE-SPLGQ 146 Query: 112 KLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHD-----GIINQKQL--EFAWSIVN 164 + + I E E +I L+ LIVH+PY E D I+ ++ + A +N Sbjct: 147 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLN 206 Query: 165 DSYASSLCLMAHPHQLAYAALLISC 189 + L+ P Q+A A+L S Sbjct: 207 RIALTDAYLLYTPSQIALTAILSSA 231 >5IYC-M nrPDB Length = 316 Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 36 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVH 95 +K + T DR+ L + ++ L ++ +K+ KG + +A+ + C+Y++C+ E P Sbjct: 118 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSL-KGRANDAIASACLYIACRQEGVPRT 176 Query: 96 IRTIC 100 + IC Sbjct: 177 FKEIC 181 >5WH1-A nrPDB Length = 211 Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 36 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVH 95 +K + T DR+ L + ++ L ++ +K+ KG + +A+ + C+Y++C+ E P Sbjct: 13 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSL-KGRANDAIASACLYIACRQEGVPRT 71 Query: 96 IRTIC 100 + IC Sbjct: 72 FKEIC 76 >2IVX-A nrPDB Length = 257 Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 38 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE 91 ++Q G RL + Q + TAIV + R+ + + K F+ + +T ++L+ KVEE Sbjct: 37 LIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTK-FNKNIISSTALFLAAKVEE 89 >2PK2-A nrPDB Length = 358 Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 11/113 (9%) Query: 38 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIR 97 ++Q G RL + Q + TAIV + R+ + ++ + F ++ ++L+ KVEE P + Sbjct: 44 LLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTR-FPGNSVAPAALFLAAKVEEQPKKLE 102 Query: 98 TICNEA----NDLWSLKVKLSRSNISEI------EFEIISVLDAFLIVHHPYT 140 + A + SL S + + ++ E I+ L L + HP+T Sbjct: 103 HVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHT 155 >3MIA-B nrPDB Length = 266 Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Query: 38 VVQTFGDRLRLRQRVLATAIVLLRR-YMLKKNEEKGFSLEALVATCIYLSCKVEECP 93 ++Q G RL + Q + TAIV + R YM++ + F ++ ++L+ KVEE P Sbjct: 44 LLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQ--FPGNSVAPAALFLAAKVEEQP 98 >6GZH-B nrPDB Length = 726 Score = 32.0 bits (71), Expect = 0.24, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 11/113 (9%) Query: 38 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIR 97 ++Q G RL + Q + TAIV + R+ + ++ + F ++ ++L+ KVE P + Sbjct: 44 LLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTR-FPGNSVAPAALFLAAKVEGQPKKLE 102 Query: 98 TICNEANDLW----SLKVKLSRSNISEI------EFEIISVLDAFLIVHHPYT 140 + A+ SL S + + ++ E I+ L L + HP+T Sbjct: 103 HVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHT 155 >1AIS-B nrPDB Length = 200 Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 16/133 (12%) Query: 62 RYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL-KVKLSRSNISE 120 R ++K +G S+E+++A C+Y +C++ + P RT+ +E D+ + K ++ RS Sbjct: 38 REAVRKGLIRGRSIESVMAACVYAACRLLKVP---RTL-DEIADIARVDKKEIGRS---- 89 Query: 121 IEFEIISV---LDAFLIVHHPYTSLEQAFHDGI-INQKQLEFAWSIVNDSYASSLCLMAH 176 + I+ L + P T F D + +++K A I++++Y L Sbjct: 90 --YRFIARNLNLTPKKLFVKP-TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKS 146 Query: 177 PHQLAYAALLISC 189 P L AAL I+ Sbjct: 147 PAGLVAAALYIAS 159 >5YQ5-A nrPDB Length = 430 Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 109 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDS 166 L++ L +N+ E F + L+ L+ ++ + L+ DG++N L+ ++ ++DS Sbjct: 142 LQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDS 199 >6FGJ-A nrPDB Length = 237 Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%) Query: 61 RRYMLKKNEEKGF-SLEALVATCIYLSCKVEECPV--HIRTICNEANDLW-SLKVKLSRS 116 R+ ++ +E G+ SL +V+ ++L+ +VE PV IRTI D+W SL+ K+ Sbjct: 146 RKDYIQHPKENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTI---GMDMWASLEHKIRYK 202 Query: 117 NISEIE 122 N +E E Sbjct: 203 NNAETE 208 >6GAZ-Ae nrPDB Length = 390 Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Query: 14 LFLSTDLESLE-PTCLSKD-TIYQWKVVQTFGDRLRLRQR 51 L LST L + PTC ++D +Y+ ++ Q G+R+RL QR Sbjct: 329 LTLSTQLAKAQLPTCEAEDIAVYEQRLQQWHGERVRLIQR 368 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1ZP2-A nrPDB 309 7e-85 4F7N-B nrPDB 268 1e-72 4NST-B nrPDB 208 1e-54 Sequences not found previously or not previously below threshold: 6GZH-B nrPDB 83 8e-17 2PK2-A nrPDB 80 7e-16 3MIA-B nrPDB 79 1e-15 2IVX-A nrPDB 70 6e-13 1KXU-A nrPDB 67 6e-12 5IYC-M nrPDB 37 0.006 5WH1-A nrPDB 35 0.019 3DDQ-B nrPDB 32 0.25 4YC3-B nrPDB 31 0.51 3QHW-B nrPDB 30 0.71 1AIS-B nrPDB 30 0.84 2W99-A nrPDB 29 2.1 6F41-V nrPDB 28 4.4 6CNF-R nrPDB 27 5.2 5YQ5-A nrPDB 27 6.7 >1ZP2-A nrPDB Length = 235 Score = 309 bits (791), Expect = 7e-85, Method: Composition-based stats. Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 5 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 64 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM Sbjct: 1 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 60 Query: 65 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE 124 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE Sbjct: 61 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFE 120 Query: 125 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 184 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA Sbjct: 121 IISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180 Query: 185 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE 228 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE Sbjct: 181 LLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYFEDIE 224 >4F7N-B nrPDB Length = 287 Score = 268 bits (686), Expect = 1e-72, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 26/243 (10%) Query: 1 MAANYWASSQLTQLFL---------STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQR 51 MA N+W SS Q L DL+ L K I+ V+Q G+ L+LRQ+ Sbjct: 5 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ 64 Query: 52 VLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV--HIRTICNEANDLWSL 109 V+ATA V +R+ + + K + TC++L+ KVEE V + R I + L Sbjct: 65 VIATATVYFKRFYARYSL-KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATS---VL 120 Query: 110 KVKLSRS----------NISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFA 159 K + S + +I E EF ++ ++D LIV+HPY L Q D L A Sbjct: 121 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLA 180 Query: 160 WSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDAFKVILCVQRII 219 W IVND+Y + LCL+ P +A A L ++C + + + S D K++ ++ I+ Sbjct: 181 WRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAEL-SVDMEKILEIIRVIL 239 Query: 220 SIY 222 +Y Sbjct: 240 KLY 242 >4NST-B nrPDB Length = 268 Score = 208 bits (530), Expect = 1e-54, Method: Composition-based stats. Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 34/215 (15%) Query: 5 YWASSQLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYM 64 YW L + LE L+P ++ + + G RL L LAT I+ R+ Sbjct: 26 YWDKKDLAHT--PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFY 83 Query: 65 LKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEF- 123 + + K F A C++L+ KVEE P + I +K +RS +++++F Sbjct: 84 MF-HSFKQFPRYVTGACCLFLAGKVEETPKKCKDI-----------IKTARSLLNDVQFG 131 Query: 124 -------EIISVLDAFLI--------VHHPYTSL----EQAFHDGIINQKQLEFAWSIVN 164 E + VL+ L+ V HPY L +Q D QK ++ AW+ VN Sbjct: 132 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVN 191 Query: 165 DSYASSLCLMAHPHQLAYAALLISCCNDENTIPKL 199 DS ++L L P +A A + ++ + I + Sbjct: 192 DSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEW 226 >6GZH-B nrPDB Length = 726 Score = 83.2 bits (204), Expect = 8e-17, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 75/184 (40%), Gaps = 12/184 (6%) Query: 17 STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLE 76 + ++P ++Q G RL + Q + TAIV + R+ + F Sbjct: 23 PSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM-IQSFTRFPGN 81 Query: 77 ALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL--SRSNISEIEFEIISVLDAFLI 134 ++ ++L+ KVE P + + A+ + L +RS + + + +L++ ++ Sbjct: 82 SVAPAALFLAAKVEGQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIIL 141 Query: 135 --------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA-SSLCLMAHPHQLAYAAL 185 + HP+T + + ++ + ++ + +S ++ L P +A + Sbjct: 142 QTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCI 201 Query: 186 LISC 189 ++C Sbjct: 202 HLAC 205 >2PK2-A nrPDB Length = 358 Score = 80.1 bits (196), Expect = 7e-16, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 76/184 (41%), Gaps = 12/184 (6%) Query: 17 STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLE 76 + ++P ++Q G RL + Q + TAIV + R+ + F Sbjct: 23 PSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM-IQSFTRFPGN 81 Query: 77 ALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL--SRSNISEIEFEIISVLDAFLI 134 ++ ++L+ KVEE P + + A+ + L +RS + + + +L++ ++ Sbjct: 82 SVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIIL 141 Query: 135 --------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA-SSLCLMAHPHQLAYAAL 185 + HP+T + + ++ + ++ + +S ++ L P +A + Sbjct: 142 QTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCI 201 Query: 186 LISC 189 ++C Sbjct: 202 HLAC 205 >3MIA-B nrPDB Length = 266 Score = 79.3 bits (194), Expect = 1e-15, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 76/184 (41%), Gaps = 12/184 (6%) Query: 17 STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLE 76 + ++P ++Q G RL + Q + TAIV + R+ + F Sbjct: 23 PSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYM-IQSFTQFPGN 81 Query: 77 ALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL--SRSNISEIEFEIISVLDAFLI 134 ++ ++L+ KVEE P + + A+ + L +RS + + + +L++ ++ Sbjct: 82 SVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIIL 141 Query: 135 --------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA-SSLCLMAHPHQLAYAAL 185 + HP+T + + ++ + ++ + +S ++ L P +A + Sbjct: 142 QTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCI 201 Query: 186 LISC 189 ++C Sbjct: 202 HLAC 205 >2IVX-A nrPDB Length = 257 Score = 70.5 bits (171), Expect = 6e-13, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 74/184 (40%), Gaps = 12/184 (6%) Query: 17 STDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLE 76 + +E ++Q G RL + Q + TAIV + R+ + + F+ Sbjct: 16 PSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYM-HHSFTKFNKN 74 Query: 77 ALVATCIYLSCKVEECPVHIRTI--CNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLI 134 + +T ++L+ KVEE + + A + ++ + + + +L+ ++ Sbjct: 75 IISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIML 134 Query: 135 --------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA-SSLCLMAHPHQLAYAAL 185 + HP+T + + ++ + ++ + +S ++ CL P +A + Sbjct: 135 QTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCI 194 Query: 186 LISC 189 ++C Sbjct: 195 HLAC 198 >1KXU-A nrPDB Length = 333 Score = 67.0 bits (162), Expect = 6e-12, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 11/197 (5%) Query: 15 FLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLR--LRQRVLATAIVLLRRYMLKKNEEKG 72 L D LEP Y K + F + + + V+ TA + +R+ L + + Sbjct: 50 VLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEY 109 Query: 73 FSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAF 132 ++ TC +L+CKV+E V + + K + I E E +I L+ Sbjct: 110 HPRIIML-TCAFLACKVDEFNVSSPQFVGNLRESPLGQEK-ALEQILEYELLLIQQLNFH 167 Query: 133 LIVHHPYTSLEQAFHDGIINQKQLE-------FAWSIVNDSYASSLCLMAHPHQLAYAAL 185 LIVH+PY E D LE A +N + L+ P Q+A A+ Sbjct: 168 LIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAI 227 Query: 186 LISCCNDENTIPKLLDL 202 L S T+ L Sbjct: 228 LSSASRAGITMESYLSE 244 >5IYC-M nrPDB Length = 316 Score = 37.0 bits (84), Expect = 0.006, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 68/153 (44%), Gaps = 11/153 (7%) Query: 37 KVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHI 96 K + T DR+ L + ++ L ++ +K+ KG + +A+ + C+Y++C+ E P Sbjct: 119 KEITTMADRINLPRNIVDRTNNLFKQVYEQKSL-KGRANDAIASACLYIACRQEGVPRTF 177 Query: 97 RTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQL 156 + IC + ++S+ I I+ L+ + + + + + + KQ+ Sbjct: 178 KEICAVS--------RISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCL-PKQV 228 Query: 157 EFAWS-IVNDSYASSLCLMAHPHQLAYAALLIS 188 + A + I + L P +A AA+ ++ Sbjct: 229 QMAATHIARKAVELDLVPGRSPISVAAAAIYMA 261 >5WH1-A nrPDB Length = 211 Score = 35.4 bits (80), Expect = 0.019, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 37 KVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHI 96 K + T DR+ L + ++ L ++ +K+ KG + +A+ + C+Y++C+ E P Sbjct: 14 KEITTMADRINLPRNIVDRTNNLFKQVYEQKSL-KGRANDAIASACLYIACRQEGVPRTF 72 Query: 97 RTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQL 156 + IC + ++S+ I I+ L+ + + + + + + ++ Sbjct: 73 KEICAVS--------RISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQ 124 Query: 157 EFAWSIVNDSYASSLCLMAHPHQLAYAALLIS 188 A I + L P +A AA+ ++ Sbjct: 125 MAATHIARKAVELDLVPGRSPISVAAAAIYMA 156 >3DDQ-B nrPDB Length = 269 Score = 31.6 bits (70), Expect = 0.25, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 10/151 (6%) Query: 41 TFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTI 99 G+ +L+ L A+ + R++ + +G L+ + + L+ K EE P + Sbjct: 50 EVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG-KLQLVGTAAMLLASKFEEIYPPEVAEF 108 Query: 100 CNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAF-HDGIINQKQLEF 158 +D ++ K + +E ++ VL L L Q F H N K Sbjct: 109 VYITDDTYTKK------QVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESL 162 Query: 159 AWSIVNDSYA-SSLCLMAHPHQLAYAALLIS 188 A + S + L P +A AA ++ Sbjct: 163 AMFLGELSLIDADPYLKYLPSVIAAAAFHLA 193 >4YC3-B nrPDB Length = 273 Score = 30.8 bits (68), Expect = 0.51, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 8/145 (5%) Query: 45 RLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEA 103 + RL Q + + ++ R+M + K L+ + T ++++ K EE P I Sbjct: 55 KFRLLQETMYMTVSIIDRFMQNNSVPKKM-LQLVGVTAMFIASKYEEMYPPEIGDFAFVT 113 Query: 104 NDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIV 163 ++ ++ I ++E +I+ L+ L P L +A G ++ +Q A ++ Sbjct: 114 DNT------YTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLM 167 Query: 164 NDSYASSLCLMAHPHQLAYAALLIS 188 + + P Q+A A ++ Sbjct: 168 ELTMLDYDMVHFPPSQIAAGAFSLA 192 >3QHW-B nrPDB Length = 261 Score = 30.4 bits (67), Expect = 0.71, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 10/151 (6%) Query: 41 TFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTI 99 G+ +L+ L A+ + R++ + +G L+ + + L+ K EE P + Sbjct: 49 EVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG-KLQLVGTAAMLLASKFEEIYPPEVAEF 107 Query: 100 CNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFA 159 +D + S+ + +E ++ VL L L Q F ++E Sbjct: 108 VYITDDTY------SKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESL 161 Query: 160 WSIVND--SYASSLCLMAHPHQLAYAALLIS 188 + + + L P +A AA ++ Sbjct: 162 AMFLGELSLIDADPYLKYLPSLIAGAAFHLA 192 >1AIS-B nrPDB Length = 200 Score = 30.0 bits (66), Expect = 0.84, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 7/148 (4%) Query: 60 LRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNIS 119 L R ++K +G S+E+++A C+Y +C++ + P + I + A + R Sbjct: 36 LYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIAR 95 Query: 120 EIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQ 179 +++ L V P + + + +++K A I++++Y L P Sbjct: 96 N-----LNLTPKKLFVK-PTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAG 149 Query: 180 LAYAALLISCCND-ENTIPKLLDLIKST 206 L AAL I+ + E + + + Sbjct: 150 LVAAALYIASLLEGEKRTQREVAEVARV 177 >2W99-A nrPDB Length = 271 Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 20 LESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALV 79 + ++ L + + + + V A+ L R++ + +K L+ L Sbjct: 45 FKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKS-RLQLLG 103 Query: 80 ATCIYLSCKVEEC 92 ATC++++ K++E Sbjct: 104 ATCMFVASKMKET 116 >6F41-V nrPDB Length = 596 Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 78 LVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHH 137 ++A+C+Y++C+ E+ + + + ++ + + D L + H Sbjct: 125 VIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITELPLADPSLFIQH 184 Query: 138 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP 197 L+ A + + ++ A + D P +A A +L++C N + Sbjct: 185 FAEKLDLADKKIKVVKDAVKLAQRMSKDWMFEG----RRPAGIAGACILLAC--RMNNLR 238 Query: 198 KLLDLIKST 206 + I + Sbjct: 239 RTHTEIVAV 247 >6CNF-R nrPDB Length = 736 Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 78 LVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHH 137 ++A+C+Y++C+ E+ + + + ++ + + D L + H Sbjct: 125 VIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITELPLADPSLFIQH 184 Query: 138 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP 197 L+ A + + ++ A + D P +A A +L++C N + Sbjct: 185 FAEKLDLADKKIKVVKDAVKLAQRMSKDWMFEG----RRPAGIAGACILLAC--RMNNLR 238 Query: 198 KLLDLIKST 206 + I + Sbjct: 239 RTHTEIVAV 247 >5YQ5-A nrPDB Length = 430 Score = 27.0 bits (58), Expect = 6.7, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 109 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYA 168 L++ L +N+ E F + L+ L+ ++ + L+ DG++N L+ ++ ++DS Sbjct: 142 LQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDSLL 201 Query: 169 SS 170 Sbjct: 202 KD 203 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.323 0.133 0.357 Lambda K H 0.267 0.0401 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,941,782 Number of Sequences: 36641 Number of extensions: 265431 Number of successful extensions: 1059 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 1002 Number of HSP's gapped (non-prelim): 44 length of query: 228 length of database: 10,336,785 effective HSP length: 94 effective length of query: 134 effective length of database: 6,892,531 effective search space: 923599154 effective search space used: 923599154 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 57 (26.6 bits)