BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= O88618 (541 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2PFD-A nrPDB 1106 0.0 1QD1-A nrPDB 595 e-170 1BGX-T nrPDB 32 0.87 4N56-A nrPDB 32 0.92 3CUX-A nrPDB 31 1.4 1LQU-A nrPDB 30 3.4 3WPA-A nrPDB 28 8.6 >2PFD-A nrPDB Length = 541 Score = 1106 bits (2860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/541 (100%), Positives = 541/541 (100%) Query: 1 MSQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVE 60 MSQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVE Sbjct: 1 MSQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVE 60 Query: 61 GALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELN 120 GALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELN Sbjct: 61 GALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELN 120 Query: 121 VPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARK 180 VPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARK Sbjct: 121 VPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARK 180 Query: 181 FLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLD 240 FLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLD Sbjct: 181 FLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLD 240 Query: 241 FEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAAFYCDKEKLFVLEEEHRI 300 FEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAAFYCDKEKLFVLEEEHRI Sbjct: 241 FEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAAFYCDKEKLFVLEEEHRI 300 Query: 301 RLVVNRLGLDSLAPFDPKERIIEYLVPDSGPEQSLLDASLRAFVREVGARSAAPGGGSVA 360 RLVVNRLGLDSLAPFDPKERIIEYLVPDSGPEQSLLDASLRAFVREVGARSAAPGGGSVA Sbjct: 301 RLVVNRLGLDSLAPFDPKERIIEYLVPDSGPEQSLLDASLRAFVREVGARSAAPGGGSVA 360 Query: 361 AAVAALGAALASMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACL 420 AAVAALGAALASMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACL Sbjct: 361 AAVAALGAALASMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACL 420 Query: 421 GAIKLPKNTPEERDRRTCALQEGLRQAVAVPLKLAETVSQLWPALQELAQCGNLSCLSDL 480 GAIKLPKNTPEERDRRTCALQEGLRQAVAVPLKLAETVSQLWPALQELAQCGNLSCLSDL Sbjct: 421 GAIKLPKNTPEERDRRTCALQEGLRQAVAVPLKLAETVSQLWPALQELAQCGNLSCLSDL 480 Query: 481 QVAAKALETGVFGAYFNVLINLKDMTDDVFKEKTRHRISSLLQEAKTQAALVLGSLEARK 540 QVAAKALETGVFGAYFNVLINLKDMTDDVFKEKTRHRISSLLQEAKTQAALVLGSLEARK Sbjct: 481 QVAAKALETGVFGAYFNVLINLKDMTDDVFKEKTRHRISSLLQEAKTQAALVLGSLEARK 540 Query: 541 E 541 E Sbjct: 541 E 541 >1QD1-A nrPDB Length = 325 Score = 595 bits (1533), Expect = e-170, Method: Compositional matrix adjust. Identities = 283/325 (87%), Positives = 306/325 (94%) Query: 2 SQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEG 61 SQLVECVPNFSEG NQEVIDAIS+A++QTPGCVLLDVD+GPSTNRTVYTFVG+PE VVEG Sbjct: 1 SQLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEG 60 Query: 62 ALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNV 121 AL+AAR A QLIDM +H GEHPRMGALDVCPFIPVRGV+MDECV CA+AFGQRLAEEL V Sbjct: 61 ALNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGV 120 Query: 122 PVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARKF 181 PVYLYGEAA+ RQ+LPA+RAGEYEALPEKLKQAEW PDFGPS+FVPSWGATV GARKF Sbjct: 121 PVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWAPDFGPSAFVPSWGATVAGARKF 180 Query: 182 LIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLDF 241 L+AFNINLLST+EQAHRIAL+LREQGRGKDQPGRLKKVQ IGWYL+EKNLAQVSTNLLDF Sbjct: 181 LLAFNINLLSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDF 240 Query: 242 EVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAAFYCDKEKLFVLEEEHRIR 301 EVT LHTV+EE REAQEL+LPVVGSQLVGLVPLKALLDAAAFYC+KE LF+L++EHRIR Sbjct: 241 EVTGLHTVFEETCREAQELSLPVVGSQLVGLVPLKALLDAAAFYCEKENLFLLQDEHRIR 300 Query: 302 LVVNRLGLDSLAPFDPKERIIEYLV 326 LVVNRLGLDSLAPF PKERIIEYLV Sbjct: 301 LVVNRLGLDSLAPFKPKERIIEYLV 325 >1BGX-T nrPDB Length = 832 Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 19/101 (18%) Query: 113 QRLAEELNVPVYLYGEAAQMPSR--QTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPS 170 RL++EL +P Y EA R Q+ P +RA + L E ++ FG +VP Sbjct: 676 HRLSQELAIP---YEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 732 Query: 171 WGATVTGARKFLIAFNINLLSTKEQAHRIALNLREQGRGKD 211 A V S +E A R+A N+ QG D Sbjct: 733 LEARVK--------------SVREAAERMAFNMPVQGTAAD 759 >4N56-A nrPDB Length = 553 Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 19/101 (18%) Query: 113 QRLAEELNVPVYLYGEAAQMPSR--QTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPS 170 RL++EL +P Y EA R Q+ P +RA + L E ++ FG +VP Sbjct: 397 HRLSQELAIP---YEEAQAFIERYFQSFPKVRAWLEKTLEEGRRRGYVETLFGRRRYVPD 453 Query: 171 WGATVTGARKFLIAFNINLLSTKEQAHRIALNLREQGRGKD 211 A V S +E A R+A N+ QG D Sbjct: 454 LEARVK--------------SVREAAERMAFNMPVQGTAAD 480 >3CUX-A nrPDB Length = 528 Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 33/141 (23%) Query: 141 IRAGEYEALPE---KLKQAEW-------------VPDFGPSSFVPSWGATVTGARKFLIA 184 I AGE+ E ++++A+W V GP A +GA F+ Sbjct: 54 IDAGEFPKFLEETKRIREADWTIAKLPKDLEDRRVEITGPVDRKMVINALNSGAHLFMAD 113 Query: 185 FNINLLSTKEQAHRIALNLREQGRG----KDQPGRLKK---------VQGIGWYLEEKNL 231 F + T E A +NLR+ +G K++ G+ + V+ GW+LEEK++ Sbjct: 114 FEDSNSPTWENAIEGQINLRDAVKGTISHKNENGKEYRLNSKTAVLIVRPRGWHLEEKHM 173 Query: 232 ----AQVSTNLLDFEVTALHT 248 +S +L+DF + H Sbjct: 174 QVDGKNMSGSLVDFGLYFFHN 194 >1LQU-A nrPDB Length = 456 Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 209 GKDQPGRLKKVQGIGWYLEEKNLAQVSTNL 238 G+D PG + V +GWY + QVS +L Sbjct: 116 GEDLPGSIAAVDFVGWYNAHPHFEQVSPDL 145 >3WPA-A nrPDB Length = 427 Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 25/53 (47%) Query: 14 GNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEGALSAA 66 GNN V++ IS P L +DAG T + V V + V +G L +A Sbjct: 144 GNNAVVLNNTGLTISGGPSVTLAGIDAGNKTIQNVANAVNATDAVNKGQLDSA 196 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2PFD-A nrPDB 1076 0.0 1QD1-A nrPDB 657 0.0 Sequences not found previously or not previously below threshold: 1BGX-T nrPDB 37 0.028 4N56-A nrPDB 36 0.035 5IEF-A nrPDB 34 0.15 5HJR-A nrPDB 34 0.15 2ETT-A nrPDB 31 1.2 3CUX-A nrPDB 30 2.4 6GAS-A nrPDB 30 3.4 1LQU-A nrPDB 30 3.8 3WPA-A nrPDB 29 5.1 4JPB-A nrPDB 29 5.2 CONVERGED! >2PFD-A nrPDB Length = 541 Score = 1076 bits (2784), Expect = 0.0, Method: Composition-based stats. Identities = 541/541 (100%), Positives = 541/541 (100%) Query: 1 MSQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVE 60 MSQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVE Sbjct: 1 MSQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVE 60 Query: 61 GALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELN 120 GALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELN Sbjct: 61 GALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELN 120 Query: 121 VPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARK 180 VPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARK Sbjct: 121 VPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARK 180 Query: 181 FLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLD 240 FLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLD Sbjct: 181 FLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLD 240 Query: 241 FEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAAFYCDKEKLFVLEEEHRI 300 FEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAAFYCDKEKLFVLEEEHRI Sbjct: 241 FEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAAFYCDKEKLFVLEEEHRI 300 Query: 301 RLVVNRLGLDSLAPFDPKERIIEYLVPDSGPEQSLLDASLRAFVREVGARSAAPGGGSVA 360 RLVVNRLGLDSLAPFDPKERIIEYLVPDSGPEQSLLDASLRAFVREVGARSAAPGGGSVA Sbjct: 301 RLVVNRLGLDSLAPFDPKERIIEYLVPDSGPEQSLLDASLRAFVREVGARSAAPGGGSVA 360 Query: 361 AAVAALGAALASMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACL 420 AAVAALGAALASMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACL Sbjct: 361 AAVAALGAALASMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACL 420 Query: 421 GAIKLPKNTPEERDRRTCALQEGLRQAVAVPLKLAETVSQLWPALQELAQCGNLSCLSDL 480 GAIKLPKNTPEERDRRTCALQEGLRQAVAVPLKLAETVSQLWPALQELAQCGNLSCLSDL Sbjct: 421 GAIKLPKNTPEERDRRTCALQEGLRQAVAVPLKLAETVSQLWPALQELAQCGNLSCLSDL 480 Query: 481 QVAAKALETGVFGAYFNVLINLKDMTDDVFKEKTRHRISSLLQEAKTQAALVLGSLEARK 540 QVAAKALETGVFGAYFNVLINLKDMTDDVFKEKTRHRISSLLQEAKTQAALVLGSLEARK Sbjct: 481 QVAAKALETGVFGAYFNVLINLKDMTDDVFKEKTRHRISSLLQEAKTQAALVLGSLEARK 540 Query: 541 E 541 E Sbjct: 541 E 541 >1QD1-A nrPDB Length = 325 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 283/325 (87%), Positives = 306/325 (94%) Query: 2 SQLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEG 61 SQLVECVPNFSEG NQEVIDAIS+A++QTPGCVLLDVD+GPSTNRTVYTFVG+PE VVEG Sbjct: 1 SQLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEG 60 Query: 62 ALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNV 121 AL+AAR A QLIDM +H GEHPRMGALDVCPFIPVRGV+MDECV CA+AFGQRLAEEL V Sbjct: 61 ALNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGV 120 Query: 122 PVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARKF 181 PVYLYGEAA+ RQ+LPA+RAGEYEALPEKLKQAEW PDFGPS+FVPSWGATV GARKF Sbjct: 121 PVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWAPDFGPSAFVPSWGATVAGARKF 180 Query: 182 LIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLDF 241 L+AFNINLLST+EQAHRIAL+LREQGRGKDQPGRLKKVQ IGWYL+EKNLAQVSTNLLDF Sbjct: 181 LLAFNINLLSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDF 240 Query: 242 EVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAAFYCDKEKLFVLEEEHRIR 301 EVT LHTV+EE REAQEL+LPVVGSQLVGLVPLKALLDAAAFYC+KE LF+L++EHRIR Sbjct: 241 EVTGLHTVFEETCREAQELSLPVVGSQLVGLVPLKALLDAAAFYCEKENLFLLQDEHRIR 300 Query: 302 LVVNRLGLDSLAPFDPKERIIEYLV 326 LVVNRLGLDSLAPF PKERIIEYLV Sbjct: 301 LVVNRLGLDSLAPFKPKERIIEYLV 325 >1BGX-T nrPDB Length = 832 Score = 36.5 bits (83), Expect = 0.028, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 19/102 (18%) Query: 112 GQRLAEELNVPVYLYGEAAQMPSR--QTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVP 169 RL++EL +P Y EA R Q+ P +RA + L E ++ FG +VP Sbjct: 675 AHRLSQELAIP---YEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVP 731 Query: 170 SWGATVTGARKFLIAFNINLLSTKEQAHRIALNLREQGRGKD 211 A V S +E A R+A N+ QG D Sbjct: 732 DLEARVK--------------SVREAAERMAFNMPVQGTAAD 759 >4N56-A nrPDB Length = 553 Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 19/102 (18%) Query: 112 GQRLAEELNVPVYLYGEAAQMPSR--QTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVP 169 RL++EL +P Y EA R Q+ P +RA + L E ++ FG +VP Sbjct: 396 AHRLSQELAIP---YEEAQAFIERYFQSFPKVRAWLEKTLEEGRRRGYVETLFGRRRYVP 452 Query: 170 SWGATVTGARKFLIAFNINLLSTKEQAHRIALNLREQGRGKD 211 A V S +E A R+A N+ QG D Sbjct: 453 DLEARVK--------------SVREAAERMAFNMPVQGTAAD 480 >5IEF-A nrPDB Length = 913 Score = 34.2 bits (77), Expect = 0.15, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%) Query: 271 GLVPLKALLDAAAFYCDKEKLFVLEEEHRIRLVV---------NRLGLDSLAPFDPKERI 321 GL P +ALLD D + ++ E ++ LV+ R+ +D L P P+ R+ Sbjct: 24 GLSPYRALLDTLQLGPDALTVHLIHEVTKVLLVLELQGLQKNMTRIRIDELEPRRPRYRV 83 Query: 322 IEYLVPDSGPEQSLLDASLR 341 + LV D P + L S R Sbjct: 84 PDVLVAD--PPTARLSVSGR 101 >5HJR-A nrPDB Length = 857 Score = 34.2 bits (77), Expect = 0.15, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%) Query: 271 GLVPLKALLDAAAFYCDKEKLFVLEEEHRIRLVV---------NRLGLDSLAPFDPKERI 321 GL P +ALLD D + ++ E ++ LV+ R+ +D L P P+ R+ Sbjct: 24 GLSPYRALLDTLQLGPDALTVHLIHEVTKVLLVLELQGLQKNMTRIRIDELEPRRPRYRV 83 Query: 322 IEYLVPDSGPEQSLLDASLR 341 + LV D P + L S R Sbjct: 84 PDVLVAD--PPTARLSVSGR 101 >2ETT-A nrPDB Length = 128 Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Query: 135 RQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSW 171 R T+P R E+ AL +++K+ VPDF PS +P+W Sbjct: 45 RHTVPR-RYSEFHALHKRIKKLYKVPDF-PSKRLPNW 79 >3CUX-A nrPDB Length = 528 Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 33/140 (23%) Query: 141 IRAGEYEALPE---KLKQAEW-------------VPDFGPSSFVPSWGATVTGARKFLIA 184 I AGE+ E ++++A+W V GP A +GA F+ Sbjct: 54 IDAGEFPKFLEETKRIREADWTIAKLPKDLEDRRVEITGPVDRKMVINALNSGAHLFMAD 113 Query: 185 FNINLLSTKEQAHRIALNLREQGRG----KDQPG---RLKKVQGI------GWYLEEKNL 231 F + T E A +NLR+ +G K++ G RL + GW+LEEK++ Sbjct: 114 FEDSNSPTWENAIEGQINLRDAVKGTISHKNENGKEYRLNSKTAVLIVRPRGWHLEEKHM 173 Query: 232 ----AQVSTNLLDFEVTALH 247 +S +L+DF + H Sbjct: 174 QVDGKNMSGSLVDFGLYFFH 193 >6GAS-A nrPDB Length = 331 Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 244 TALHTVYEEARREAQEL---NLPVVGSQLVGLVPLKALLDAAAF 284 T L T + R+A +LP +G QL L P K + D A F Sbjct: 20 TGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGF 63 >1LQU-A nrPDB Length = 456 Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 209 GKDQPGRLKKVQGIGWYLEEKNLAQVSTNL 238 G+D PG + V +GWY + QVS +L Sbjct: 116 GEDLPGSIAAVDFVGWYNAHPHFEQVSPDL 145 >3WPA-A nrPDB Length = 427 Score = 29.2 bits (64), Expect = 5.1, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 25/53 (47%) Query: 14 GNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEGALSAA 66 GNN V++ IS P L +DAG T + V V + V +G L +A Sbjct: 144 GNNAVVLNNTGLTISGGPSVTLAGIDAGNKTIQNVANAVNATDAVNKGQLDSA 196 >4JPB-A nrPDB Length = 319 Score = 29.2 bits (64), Expect = 5.2, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 189 LLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLDFEVTALHT 248 +LS + + + + + + + GRG D+ ++K G E K +L+F V T Sbjct: 82 ILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLVPGFST 141 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.316 0.137 0.408 Lambda K H 0.267 0.0419 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,849,827 Number of Sequences: 36641 Number of extensions: 940197 Number of successful extensions: 2521 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 2509 Number of HSP's gapped (non-prelim): 22 length of query: 541 length of database: 10,336,785 effective HSP length: 102 effective length of query: 439 effective length of database: 6,599,403 effective search space: 2897137917 effective search space used: 2897137917 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 62 (28.5 bits)