BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= O76745 (302 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1NTF-A nrPDB 585 e-168 2XSW-A nrPDB 102 3e-22 5A7J-A nrPDB 100 1e-21 4CMN-A nrPDB 89 3e-18 1I9Z-A nrPDB 83 1e-16 6IBD-A nrPDB 72 3e-13 5OKP-A nrPDB 69 2e-12 3NR8-B nrPDB 65 3e-11 5CGZ-A nrPDB 32 0.40 3FHO-A nrPDB 30 1.4 1MDC-A nrPDB 30 1.6 >1NTF-A nrPDB Length = 282 Score = 585 bits (1509), Expect = e-168, Method: Compositional matrix adjust. Identities = 282/282 (100%), Positives = 282/282 (100%) Query: 21 GSPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPAC 80 GSPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPAC Sbjct: 1 GSPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPAC 60 Query: 81 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVT 140 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVT Sbjct: 61 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVT 120 Query: 141 SFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNA 200 SFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNA Sbjct: 121 SFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNA 180 Query: 201 THAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPS 260 THAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPS Sbjct: 181 THAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPS 240 Query: 261 WTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 302 WTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL Sbjct: 241 WTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 >2XSW-A nrPDB Length = 357 Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/330 (28%), Positives = 146/330 (44%), Gaps = 47/330 (14%) Query: 4 LLSAGAALAFVLGLCAAGSPPAQLSVHTVSWN-SGHERAPTNLEE-LLGLNSGETPDVIA 61 LL++GA L A P +++ +WN G + P +L+E LL + D+ Sbjct: 5 LLASGALLG--ADELARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYV 62 Query: 62 VAVQ-GFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTL 120 + VQ G + + + + LL+S + L ++ L +C E T Sbjct: 63 IGVQEGCSDRREWETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTT 122 Query: 121 KNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSK-- 178 + V K G + SFT + F F TS TS + K A + LDY++ Sbjct: 123 R------IVSQIKTKGALGISFTFFGTSFLFITSHF-----TSGDGKVA-ERLLDYTRTV 170 Query: 179 ------KDDPS---------------DFLFWIGDLNVRVETNATHAKSLVDQN---NIDG 214 ++ P D +FW GD N R+ T +L+ Q ++ Sbjct: 171 QALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPA 230 Query: 215 LMAFDQL-KKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSA---TPSWTDRALYKSG 270 L+ DQL ++ ++ +F G+ EP + F P+YKF D YD ++ TPS+TDR LY+S Sbjct: 231 LLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSR 290 Query: 271 TGKTIQPLSYNSLTNYKQTEHRPVLAKFRV 300 I P+SY+S K ++HRPV FRV Sbjct: 291 HKGDICPVSYSSCPGIKTSDHRPVYGLFRV 320 >5A7J-A nrPDB Length = 313 Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 133/286 (46%), Gaps = 29/286 (10%) Query: 40 RAPTNLEELLGLNSGETPDVIAVAVQGFG------FQTDKPQQGPACVKNFQSLLTSKGY 93 ++P L N + PDV V Q F D P++ + L Y Sbjct: 20 QSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKY 79 Query: 94 TKLKNTITETMGLTVYCLEKHLDQ-NTLKNETIIVTVDDQK-KSGGIVTSFTIYNKRFSF 151 K+K + L +Y ++H + ++ ET+ + + GG+ F +N Sbjct: 80 AKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICV 139 Query: 152 TTSRMSD--EDVTSTNTKYA-YDTRLDYSKKDDPS---------DFLFWIGDLNVRVET- 198 S ++ E+ N Y +R+ + + D PS D + W+GDLN R+E Sbjct: 140 VNSHLAAHIEEYERRNQDYKDICSRMQFCQPD-PSLPPLTISNHDVILWLGDLNYRIEEL 198 Query: 199 NATHAKSLVDQNNIDGLMAFDQLK-KAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSA 257 + K L+++ + L A+DQLK + + +F+G+TE ++TF+PTYK+ +D++D S Sbjct: 199 DVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSE 258 Query: 258 ---TPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRV 300 P+W DR L+K GK I LSY S K ++H+PV + F + Sbjct: 259 KCRAPAWCDRILWK---GKNITQLSYQSHMALKTSDHKPVSSVFDI 301 >4CMN-A nrPDB Length = 354 Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 32/294 (10%) Query: 33 SWNSGHERAPTNLEELLGLNSGETPDVIAVAVQG--------FGFQTDKPQQGPACVKNF 84 +WN + + LE L + PD+ + Q F F++ K Q+ V+ Sbjct: 33 TWNVNGQSPDSGLEPWLNCDPN-PPDIYCIGFQELDLSTEAFFYFESVKEQEWSMAVE-- 89 Query: 85 QSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQ-NTLKNETIIVTV-DDQKKSGGIVTSF 142 + L + Y K++ M L ++ + + ET+ + GG+ F Sbjct: 90 RGLHSKAKYKKVQLVRLVGMMLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVAVRF 149 Query: 143 TIYNKRFSFTTSRMSD--EDVTSTNTKYA-YDTRLDYSKKDD--------PSDFLFWIGD 191 +N F S ++ ED N Y R+ + + + + W+GD Sbjct: 150 VFHNTTFCIVNSHLAAHVEDFERRNQDYKDICARMSFVVPNQTLPQLNIMKHEVVIWLGD 209 Query: 192 LNVRVET-NATHAKSLVDQNNIDGLMAFDQLKKAKEQK-LFDGWTEPQVTFKPTYKFKPN 249 LN R+ +A KSL+++ ++ L+ FDQL + QK F + E ++ F PTYK+ Sbjct: 210 LNYRLGMPDANEVKSLINKKDLQRLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYDSK 269 Query: 250 TDEYDLSA---TPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRV 300 TD +D S P+W DR L++ G + L+Y S K ++H+PV A F + Sbjct: 270 TDRWDSSGKCRVPAWCDRILWR---GTNVNQLNYRSHMELKTSDHKPVSALFHI 320 >1I9Z-A nrPDB Length = 347 Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 126/304 (41%), Gaps = 39/304 (12%) Query: 27 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQ----GPACVK 82 + + S+N A T LE L + D+ V Q T PQQ PA + Sbjct: 25 VKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLT--PQQVISADPAKRR 82 Query: 83 NFQS----LLTSK-----GYTKLKNTITETMGLTVYCLEKHLDQNTLKN------ETIIV 127 ++S LL K GY +L++ L ++C E L ++KN +T + Sbjct: 83 EWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLP--SIKNVEGTVKKTGLG 140 Query: 128 TVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDT-----RLDYSKKDDP 182 V K G + F + F TS ++ + Y T R + Sbjct: 141 GVSGNK--GAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFN 198 Query: 183 SDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQL-KKAKEQKLFDGWTEPQVTFK 241 D++ W GD N R+ + Q + L +DQL K+ K+F ++E +TF Sbjct: 199 HDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFP 258 Query: 242 PTYKFKPNTDEYDLS---ATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKF 298 PTYKF TD YD S P+WTDR LY+ + P SY S+ Y ++HRP+ A + Sbjct: 259 PTYKFDIGTDIYDTSDKHRVPAWTDRILYRG----ELVPHSYQSVPLY-YSDHRPIYATY 313 Query: 299 RVTL 302 + Sbjct: 314 EANI 317 >6IBD-A nrPDB Length = 463 Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 14/128 (10%) Query: 186 LFWIGDLNVRVETNATHAKSLVD---QNNIDGLMAFDQL-KKAKEQKLFDGWTEPQVTFK 241 LFW GDLN RV+ A++++ Q L++ DQL + +EQK+F + E ++TF Sbjct: 188 LFWFGDLNYRVDLPTWEAETIIQKIKQQQYADLLSHDQLLTERREQKVFLHFEEEEITFA 247 Query: 242 PTYKFKPNT-DEYDLSAT---------PSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEH 291 PTY+F+ T D+Y + PSW DR L+KS + SY S ++ ++H Sbjct: 248 PTYRFERLTRDKYAYTKQKATGMKYNLPSWCDRVLWKSYPLVHVVCQSYGSTSDIMTSDH 307 Query: 292 RPVLAKFR 299 PV A F Sbjct: 308 SPVFATFE 315 >5OKP-A nrPDB Length = 461 Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/312 (24%), Positives = 127/312 (40%), Gaps = 34/312 (10%) Query: 21 GSPPAQLSVHTVSWNSGHERAPTNLEELL---GLNSGETPDVIAVAVQG----FGFQTDK 73 G P +SV +WN G P N+ GL G+T D + V + FG Q + Sbjct: 1 GPEPDMISVFIGTWNMGSVPPPKNVTSWFTSKGL--GKTLDEVTVTIPHDIYVFGTQENS 58 Query: 74 --PQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVT--V 129 ++ ++ LT Y + + + V +H ++ + + + + T Sbjct: 59 VGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIA 118 Query: 130 DDQKKSGGIVTSFTIYNKRFSFTTSRMS--DEDVTSTNTKYAYDTRL-----DYSKKDDP 182 + G + SF F F ++ +E N Y RL DD Sbjct: 119 NTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNADDI 178 Query: 183 SD---FLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQV 238 SD LFW GDLN R++ + + + + + L+ DQL +E+ K+F ++E ++ Sbjct: 179 SDRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEI 238 Query: 239 TFKPTYKF-KPNTDEYDL---------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQ 288 +F PTY++ + + D Y + PSW DR L+KS I SY + Sbjct: 239 SFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVT 298 Query: 289 TEHRPVLAKFRV 300 ++H PV F V Sbjct: 299 SDHSPVFGTFEV 310 >3NR8-B nrPDB Length = 316 Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 35/193 (18%) Query: 136 GGIVTSFTIYNKRFSFTTSRMS--DEDVTSTNTKY---------------AYDTRLDYSK 178 G + SF F F ++ +E N Y A+D L ++ Sbjct: 126 GAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTH 185 Query: 179 KDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQ 237 LFW GDLN R++ + + + + + L+ DQL +E+ K+F ++E + Sbjct: 186 -------LFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEE 238 Query: 238 VTFKPTYKF-KPNTDEYDL---------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYK 287 ++F PTY++ + + D Y + PSW DR L+KS I SY + Sbjct: 239 ISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIV 298 Query: 288 QTEHRPVLAKFRV 300 ++H PV F V Sbjct: 299 TSDHSPVFGTFEV 311 >5CGZ-A nrPDB Length = 240 Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 175 DYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWT 234 DY + D D LF + D+ RV+ + SL D N D +A ++A+ +G+ Sbjct: 85 DYPMRAD-KDTLFRLADVYRRVQPEFVLSHSLKDPYNYDHPLAMHLAQEARIIAQAEGYK 143 Query: 235 --EPQVTFKPTYKFKPNTDE 252 E V P Y F+P+ E Sbjct: 144 PGEKIVGAPPVYAFEPHQPE 163 >3FHO-A nrPDB Length = 508 Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 137 GIVTSFTIYNKRFSFTTSRMSDE-DVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDL--- 192 I+ SF + + TT+ ++ DV+ N YD LD + + DP +L IG Sbjct: 398 AIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRF 457 Query: 193 -NVRVETNATHAK 204 V V N H K Sbjct: 458 GRVGVSINFVHDK 470 >1MDC-A nrPDB Length = 132 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 205 SLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPSWTDR 264 SLV Q N DG + L K Q L V+ KPT K + N D Y ++T + Sbjct: 9 SLVKQENFDGFLKSAGLSDDKIQAL--------VSDKPTQKMEANGDSYSNTSTGGGGAK 60 Query: 265 AL-YKSG 270 + +KSG Sbjct: 61 TVSFKSG 67 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1NTF-A nrPDB 376 e-104 5OKP-A nrPDB 340 4e-94 4CMN-A nrPDB 332 1e-91 3NR8-B nrPDB 330 4e-91 5A7J-A nrPDB 329 9e-91 2XSW-A nrPDB 325 2e-89 1I9Z-A nrPDB 311 3e-85 6IBD-A nrPDB 277 3e-75 Sequences not found previously or not previously below threshold: 2VSX-A nrPDB 33 0.20 2IT1-A nrPDB 29 2.4 4MIT-A nrPDB 29 3.5 1EMR-A nrPDB 28 4.9 4J25-A nrPDB 28 5.7 CONVERGED! >1NTF-A nrPDB Length = 282 Score = 376 bits (964), Expect = e-104, Method: Composition-based stats. Identities = 282/282 (100%), Positives = 282/282 (100%) Query: 21 GSPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPAC 80 GSPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPAC Sbjct: 1 GSPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPAC 60 Query: 81 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVT 140 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVT Sbjct: 61 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVT 120 Query: 141 SFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNA 200 SFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNA Sbjct: 121 SFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNA 180 Query: 201 THAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPS 260 THAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPS Sbjct: 181 THAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPS 240 Query: 261 WTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 302 WTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL Sbjct: 241 WTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 >5OKP-A nrPDB Length = 461 Score = 340 bits (873), Expect = 4e-94, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 125/312 (40%), Gaps = 30/312 (9%) Query: 21 GSPPAQLSVHTVSWNSGHERAPTNLEELLGLNS-GETPDVIAVAVQG----FGFQTDK-- 73 G P +SV +WN G P N+ G+T D + V + FG Q + Sbjct: 1 GPEPDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVG 60 Query: 74 PQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVT--VDD 131 ++ ++ LT Y + + + V +H ++ + + + + T + Sbjct: 61 DREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANT 120 Query: 132 QKKSGGIVTSFTIYNKRFSFTTSRMS--DEDVTSTNTKYAYDTRL-----DYSKKDDPSD 184 G + SF F F ++ +E N Y RL DD SD Sbjct: 121 LGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNADDISD 180 Query: 185 ---FLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQVTF 240 LFW GDLN R++ + + + + + L+ DQL +E+ K+F ++E +++F Sbjct: 181 RFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISF 240 Query: 241 KPTYKFKPN-TDEYDL---------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTE 290 PTY+++ D Y + PSW DR L+KS I SY + ++ Sbjct: 241 PPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSD 300 Query: 291 HRPVLAKFRVTL 302 H PV F V + Sbjct: 301 HSPVFGTFEVGV 312 >4CMN-A nrPDB Length = 354 Score = 332 bits (851), Expect = 1e-91, Method: Composition-based stats. Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 32/299 (10%) Query: 30 HTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQG--------FGFQTDKPQQGPACV 81 +WN + + LE L + PD+ + Q F F++ K Q+ V Sbjct: 30 FVGTWNVNGQSPDSGLEPWLNCDPNP-PDIYCIGFQELDLSTEAFFYFESVKEQEWSMAV 88 Query: 82 KNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQ-NTLKNETIIVTVDD-QKKSGGIV 139 + + L + Y K++ M L ++ + + ET+ + GG+ Sbjct: 89 E--RGLHSKAKYKKVQLVRLVGMMLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVA 146 Query: 140 TSFTIYNKRFSFTTSRMSD--EDVTSTNTKYA-YDTRLDYSKKDD--------PSDFLFW 188 F +N F S ++ ED N Y R+ + + + + W Sbjct: 147 VRFVFHNTTFCIVNSHLAAHVEDFERRNQDYKDICARMSFVVPNQTLPQLNIMKHEVVIW 206 Query: 189 IGDLNVRVET-NATHAKSLVDQNNIDGLMAFDQLKKAKEQK-LFDGWTEPQVTFKPTYKF 246 +GDLN R+ +A KSL+++ ++ L+ FDQL + QK F + E ++ F PTYK+ Sbjct: 207 LGDLNYRLGMPDANEVKSLINKKDLQRLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKY 266 Query: 247 KPNTDEYDLS---ATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 302 TD +D S P+W DR L++ G + L+Y S K ++H+PV A F + + Sbjct: 267 DSKTDRWDSSGKCRVPAWCDRILWR---GTNVNQLNYRSHMELKTSDHKPVSALFHIGV 322 >3NR8-B nrPDB Length = 316 Score = 330 bits (847), Expect = 4e-91, Method: Composition-based stats. Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 30/310 (9%) Query: 23 PPAQLSVHTVSWNSGHERAPTNLEELLGLNS-GETPDVIAVAVQG----FGFQTDK--PQ 75 P +SV +WN G P N+ G+T D + V + FG Q + + Sbjct: 4 EPDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDR 63 Query: 76 QGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVT--VDDQK 133 + ++ LT Y + + + V +H ++ + + + + T + Sbjct: 64 EWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLG 123 Query: 134 KSGGIVTSFTIYNKRFSFTTSRMS--DEDVTSTNTKYAYDTRL-----DYSKKDDPS--- 183 G + SF F F ++ +E N Y RL D S Sbjct: 124 NKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRF 183 Query: 184 DFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQVTFKP 242 LFW GDLN R++ + + + + + L+ DQL +E+ K+F ++E +++F P Sbjct: 184 THLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPP 243 Query: 243 TYKFKPN-TDEYDL---------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHR 292 TY+++ D Y + PSW DR L+KS I SY + ++H Sbjct: 244 TYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHS 303 Query: 293 PVLAKFRVTL 302 PV F V + Sbjct: 304 PVFGTFEVGV 313 >5A7J-A nrPDB Length = 313 Score = 329 bits (843), Expect = 9e-91, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 133/302 (44%), Gaps = 28/302 (9%) Query: 25 AQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFG------FQTDKPQQGP 78 ++N + P L N + PDV V Q F D P++ Sbjct: 6 QNFRFFAGTYNVNGQS-PKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEE 64 Query: 79 ACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNT-LKNETIIVTVDD-QKKSG 136 + L Y K+K + L +Y ++H + ++ ET+ + G Sbjct: 65 WFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKG 124 Query: 137 GIVTSFTIYNKRFSFTTSRMSD--EDVTSTNTKYA-YDTRLDYSKKD--------DPSDF 185 G+ F +N S ++ E+ N Y +R+ + + D D Sbjct: 125 GVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDV 184 Query: 186 LFWIGDLNVRV-ETNATHAKSLVDQNNIDGLMAFDQLK-KAKEQKLFDGWTEPQVTFKPT 243 + W+GDLN R+ E + K L+++ + L A+DQLK + + +F+G+TE ++TF+PT Sbjct: 185 ILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPT 244 Query: 244 YKFKPNTDEYDLS---ATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRV 300 YK+ +D++D S P+W DR L+K GK I LSY S K ++H+PV + F + Sbjct: 245 YKYDTGSDDWDTSEKCRAPAWCDRILWK---GKNITQLSYQSHMALKTSDHKPVSSVFDI 301 Query: 301 TL 302 + Sbjct: 302 GV 303 >2XSW-A nrPDB Length = 357 Score = 325 bits (832), Expect = 2e-89, Method: Composition-based stats. Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 35/326 (10%) Query: 4 LLSAGAALAFVLGLCAAGSPPAQLSVHTVSWNS-GHERAPTNLEE-LLGLNSGETPDVIA 61 LL++GA L A P +++ +WN G + P +L+E LL + D+ Sbjct: 5 LLASGALLG--ADELARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYV 62 Query: 62 VAVQG-FGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTL 120 + VQ + + + + LL+S + L ++ L +C E T Sbjct: 63 IGVQEGCSDRREWETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTT 122 Query: 121 KNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSK-- 178 + V K G + SFT + F F TS + D Y + Sbjct: 123 R------IVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLP 176 Query: 179 KDDPS---------------DFLFWIGDLNVRVETNATHAKSLVDQN---NIDGLMAFDQ 220 ++ P D +FW GD N R+ T +L+ Q ++ L+ DQ Sbjct: 177 RNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQ 236 Query: 221 L-KKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLS---ATPSWTDRALYKSGTGKTIQ 276 L ++ ++ +F G+ EP + F P+YKF D YD + TPS+TDR LY+S I Sbjct: 237 LIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKGDIC 296 Query: 277 PLSYNSLTNYKQTEHRPVLAKFRVTL 302 P+SY+S K ++HRPV FRV + Sbjct: 297 PVSYSSCPGIKTSDHRPVYGLFRVKV 322 >1I9Z-A nrPDB Length = 347 Score = 311 bits (796), Expect = 3e-85, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 121/308 (39%), Gaps = 35/308 (11%) Query: 21 GSPPAQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQ---- 76 S + + S+N A T LE L + D+ V Q T PQQ Sbjct: 19 FSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLT--PQQVISA 76 Query: 77 GPACVKNFQS----LLTSK-----GYTKLKNTITETMGLTVYCLEKHLDQNT----LKNE 123 PA + ++S LL K GY +L++ L ++C E L + Sbjct: 77 DPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKK 136 Query: 124 TIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDT-----RLDYSK 178 T + V G + F + F TS ++ + Y T R + Sbjct: 137 TGLGGVS--GNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGR 194 Query: 179 KDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLK-KAKEQKLFDGWTEPQ 237 D++ W GD N R+ + Q + L +DQL + K+F ++E Sbjct: 195 SIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELP 254 Query: 238 VTFKPTYKFKPNTDEYDLS---ATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPV 294 +TF PTYKF TD YD S P+WTDR LY+ + P SY S+ Y ++HRP+ Sbjct: 255 ITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRG----ELVPHSYQSVPLY-YSDHRPI 309 Query: 295 LAKFRVTL 302 A + + Sbjct: 310 YATYEANI 317 >6IBD-A nrPDB Length = 463 Score = 277 bits (709), Expect = 3e-75, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 39/317 (12%) Query: 22 SPPAQLSVHTVSWNSGHERAPTNLEELLGLNS---------GETP-DVIAVAVQGFGFQT 71 P +++ +WN G+ P + P D+ + Q Sbjct: 5 PEPDMITIFIGTWNMGNAPPPKKITSWFLSKGQGKTRDDSADYIPHDIYVIGTQE---DP 61 Query: 72 DKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVT--V 129 ++ +K+ +TS + + + + V +H ++ + + T Sbjct: 62 LSEKEWLEILKHSLQEITSVTFKTVAIHTLWNIRIVVLAKPEHENRISHICTDNVKTGIA 121 Query: 130 DDQKKSGGIVTSFTIYNKRFSFTTSRMSD--EDVTSTNTKYAYDTRL------DYSKKDD 181 + G + SF F S ++ E N Y R S + Sbjct: 122 NTLGNKGAVGVSFMFNGTSLGFVNSHLTSGSEKKLRRNQNYMNILRFLALGDKKLSPFNI 181 Query: 182 PS--DFLFWIGDLNVRVETNATHAKSLVD---QNNIDGLMAFDQL-KKAKEQKLFDGWTE 235 LFW GDLN RV+ A++++ Q L++ DQL + +EQK+F + E Sbjct: 182 THRFTHLFWFGDLNYRVDLPTWEAETIIQKIKQQQYADLLSHDQLLTERREQKVFLHFEE 241 Query: 236 PQVTFKPTYKFKPNT-DEYDLSAT---------PSWTDRALYKSGTGKTIQPLSYNSLTN 285 ++TF PTY+F+ T D+Y + PSW DR L+KS + SY S ++ Sbjct: 242 EEITFAPTYRFERLTRDKYAYTKQKATGMKYNLPSWCDRVLWKSYPLVHVVCQSYGSTSD 301 Query: 286 YKQTEHRPVLAKFRVTL 302 ++H PV A F + Sbjct: 302 IMTSDHSPVFATFEAGV 318 >2VSX-A nrPDB Length = 395 Score = 32.8 bits (73), Expect = 0.20, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 199 NATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSAT 258 + + +N + L+ D+L ++ + E + YK++ TD YD + Sbjct: 207 DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEE------YKYECLTDLYDSISV 260 >2IT1-A nrPDB Length = 362 Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 195 RVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPN 249 R++ V + + L D++ +E ++ T +V +KP YKF Sbjct: 178 RLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGG 232 >4MIT-A nrPDB Length = 186 Score = 28.6 bits (62), Expect = 3.5, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 19/115 (16%) Query: 169 AYDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKA--KE 226 + YS + P D++ + D N V A + + + GL +DQL+ Sbjct: 23 KTCLLISYSIRKFPEDYIPTVFD-NYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSS 81 Query: 227 QKLFD----------------GWTEPQVTFKPTYKFKPNTDEYDLSATPSWTDRA 265 +F W + F P + D P+ R Sbjct: 82 ASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRL 136 >1EMR-A nrPDB Length = 159 Score = 28.2 bits (61), Expect = 4.9, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 15/124 (12%) Query: 28 SVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQG------------FGFQTDKPQ 75 ++ + + + E P NLE+L G N + P A + G Sbjct: 18 ALFILYYTAQGEPFPNNLEKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNIT 77 Query: 76 QGPACVKNF-QSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLK--NETIIVTVDDQ 132 + + SL + T + L C + H+ + +T V + Sbjct: 78 RDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQK 137 Query: 133 KKSG 136 KK G Sbjct: 138 KKLG 141 >4J25-A nrPDB Length = 229 Score = 27.8 bits (60), Expect = 5.7, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 213 DGLMAFDQLKKAKEQKLFDGWTEPQVTFK 241 L A DQL+ A Q LF G + + F Sbjct: 107 QYLAAMDQLRLAINQGLFLGLEDFECHFA 135 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.128 0.332 Lambda K H 0.267 0.0386 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,308,188 Number of Sequences: 36641 Number of extensions: 387831 Number of successful extensions: 867 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 779 Number of HSP's gapped (non-prelim): 29 length of query: 302 length of database: 10,336,785 effective HSP length: 97 effective length of query: 205 effective length of database: 6,782,608 effective search space: 1390434640 effective search space used: 1390434640 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 59 (27.4 bits)